HHsearch alignment for GI: 254780903 and conserved domain: COG3290

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=100.00  E-value=3.5e-31  Score=243.04  Aligned_cols=189  Identities=26%  Similarity=0.355  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHH
Q ss_conf             99876752224789999999986034688993899999999999999999997776778887419830120331699999
Q gi|254780903|r  547 LAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPII  626 (766)
Q Consensus       547 la~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~~~i  626 (766)
T Consensus       337 LRaq~HEfmNkLhtI~GLlql~~--------yd~a~~~I~~~~---~~qq~~~~~l~~-------~i~--------~~~l  390 (537)
T COG3290         337 LRAQSHEFMNKLHTILGLLQLGE--------YDDALDYIQQES---EEQQELIDSLSE-------KIK--------DPVL  390 (537)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHH---HHHHHHHHHHHH-------HCC--------CHHH
T ss_conf             98852888888999987885053--------789999999987---640456899998-------512--------0888


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC---EEEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEEC
Q ss_conf             99999999999847958999808997---8998689999999998865653468---98889999999799899999978
Q gi|254780903|r  627 NEGIRLIGSSAQSKNIKIEKKIPSEL---FFNADKRIIKKILFPILSNSIKFTN---NNGKMMIRTSKIGQCVIITIADT  700 (766)
Q Consensus       627 ~~~~~~~~~~~~~k~i~l~~~~~~~l---~v~~D~~~l~QVl~NLi~NAik~t~---~~g~I~i~~~~~~~~v~i~V~D~  700 (766)
T Consensus       391 Ag~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~  470 (537)
T COG3290         391 AGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADT  470 (537)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECC
T ss_conf             99988689999972965997579867889876676789999999887788885155789679999983698799999579


Q ss_pred             CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             897897785430465053146755677887616899999999629869999798995299997359
Q gi|254780903|r  701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ  766 (766)
Q Consensus       701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~  766 (766)
T Consensus       471 G~GI~~~~~~~iFe~G~-----Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~  531 (537)
T COG3290         471 GPGIPPEVRDKIFEKGV-----STKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPK  531 (537)
T ss_pred             CCCCCHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf             99989688777873484-----14677887612889999998749669995078981499998888