HHsearch alignment for GI: 254780903 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=100.00 E-value=3.5e-31 Score=243.04 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHH
Q ss_conf 99876752224789999999986034688993899999999999999999997776778887419830120331699999
Q gi|254780903|r 547 LAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPII 626 (766)
Q Consensus 547 la~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~~~i 626 (766)
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~--------yd~a~~~I~~~~---~~qq~~~~~l~~-------~i~--------~~~l 390 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGE--------YDDALDYIQQES---EEQQELIDSLSE-------KIK--------DPVL 390 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHH---HHHHHHHHHHHH-------HCC--------CHHH
T ss_conf 98852888888999987885053--------789999999987---640456899998-------512--------0888
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC---EEEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 99999999999847958999808997---8998689999999998865653468---98889999999799899999978
Q gi|254780903|r 627 NEGIRLIGSSAQSKNIKIEKKIPSEL---FFNADKRIIKKILFPILSNSIKFTN---NNGKMMIRTSKIGQCVIITIADT 700 (766)
Q Consensus 627 ~~~~~~~~~~~~~k~i~l~~~~~~~l---~v~~D~~~l~QVl~NLi~NAik~t~---~~g~I~i~~~~~~~~v~i~V~D~ 700 (766)
T Consensus 391 Ag~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~ 470 (537)
T COG3290 391 AGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADT 470 (537)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECC
T ss_conf 99988689999972965997579867889876676789999999887788885155789679999983698799999579
Q ss_pred CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 897897785430465053146755677887616899999999629869999798995299997359
Q gi|254780903|r 701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ 766 (766)
Q Consensus 701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~ 766 (766)
T Consensus 471 G~GI~~~~~~~iFe~G~-----Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~ 531 (537)
T COG3290 471 GPGIPPEVRDKIFEKGV-----STKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPK 531 (537)
T ss_pred CCCCCHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf 99989688777873484-----14677887612889999998749669995078981499998888