HHsearch alignment for GI: 254780903 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=97.92 E-value=0.0025 Score=42.00 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCEEEECCCHHHHCCC
Q ss_conf 6888999899999999999985010011223554899999999988531017-897899996998089971420555199
Q gi|254780903|r 75 YAQQEKMTNQTSLMLTEAIEIIFQNNNIKFDLASQKKAESMLGQLLAKTRFL-SESFILLAQPNELVFASSTKNSHYIGK 153 (766)
Q Consensus 75 ~~~~~~~~~~~~~lla~~~~~~~~~~~~~~d~~~~~~ae~~L~~~~~~~~~~-~~~~i~i~d~~g~i~~~n~~~~~~~G~ 153 (766)
T Consensus 38 ~~~~~~q~~~~Al~~Ar~vA~----~p~v~e~l~~~~~~~~iq~~~~~i~~~t~a~fIVV~d~~g-IR~~HP~per-IGk 111 (537)
T COG3290 38 SDTLRDQLEHKALSTARTVAS----NPEVIEALENKDQEARIQAIAEAIRSITDADFIVVGDMKG-IRLTHPNPER-IGK 111 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CEECCCCHHH-HCC
T ss_conf 999999999899999999853----9899999865992045899999998651961899956886-2404899588-389
Q ss_pred CHH-----H-HCCCCHHHHCCCCCCCHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788-----9-6076104320544332023211531000012331577825999974232101234556554568788789
Q gi|254780903|r 154 KIG-----E-IIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSGSILIINSRVPLLRLWREEVTLEVVFFSIISA 227 (766)
Q Consensus 154 ~~~-----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 227 (766)
T Consensus 112 p~~ggde~a~~~G~~yvS~----~kGslg~s~R~~~PI~d~~--g~~IGvVsVG~~l-~~i~~~i~~~~~~l~~~~vl~l 184 (537)
T COG3290 112 PFQGGDEEAALAGESYVST----AKGSLGKSLRAKVPIFDED--GKQIGVVSVGYLL-SEIDDVILEFLRPLALIVVLGL 184 (537)
T ss_pred CCCCCCHHHHHCCCEEEEE----EECCCHHHHEEECCEECCC--CCEEEEEEEEEEH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7668888898578606998----5213024013404458799--9788899986672-6589999998998999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHH
Q ss_conf 99999998888999999----99999999999999997225974598976897899978899772999433058988999
Q gi|254780903|r 228 LLLFILFSYYRQAKKNK----ENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIA 303 (766)
Q Consensus 228 ~~~~~~~a~~~dit~~r----~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~ 303 (766)
T Consensus 185 ligl~ga~~la~~ikr~~~glEP~EIa~l~~er-~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~ 263 (537)
T COG3290 185 LIGLLGAWILARHIKRQMLGLEPEEIATLLEER-QAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIV 263 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 999999999999999998289979999999999-9999876362899878985761128899984656767564466103
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 76081205899999999724898489999988698988998899999983796069999984461799999999999999
Q gi|254780903|r 304 RLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEADQR 383 (766)
Q Consensus 304 ~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese~r 383 (766)
T Consensus 264 ~v~~p~-~~l~~----vl~~~~~~~~~e~~~---ng~--~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~y 333 (537)
T COG3290 264 EVLPPD-SDLPE----VLETGKPQHDEEIRI---NGR--LLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQY 333 (537)
T ss_pred EEECCC-CCCHH----HHHCCCCCCCHHHHC---CCE--EEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 761563-67577----875077631134414---775--99998523788897768999876377899999999989999
Q ss_pred H
Q ss_conf 9
Q gi|254780903|r 384 L 384 (766)
Q Consensus 384 l 384 (766)
T Consensus 334 a 334 (537)
T COG3290 334 A 334 (537)
T ss_pred H
T ss_conf 9