HHsearch alignment for GI: 254780903 and conserved domain: COG3850

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=99.59  E-value=4.9e-12  Score=104.82  Aligned_cols=188  Identities=24%  Similarity=0.359  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf             98767522247899999999----86034688993899999999999999999997776778887419830120331699
Q gi|254780903|r  548 AKMSHELRTPLNAILGFSEV----IKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI  623 (766)
Q Consensus       548 a~isHelrtPL~aI~g~~el----l~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~  623 (766)
T Consensus       374 atIAReLHDSiAQsLS~LkiQvt~L~~~~-~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-----lt--L~e~~L~  445 (574)
T COG3850         374 ATIARELHDSIAQSLSFLKIQVTLLKTAI-PEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-----LT--LQEAELP  445 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--CCCCCHH
T ss_conf             99999877899999999999999998427-8656687999999999999999999999999878-----76--0567638


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECC
Q ss_conf             99999999999999847958999808-99789986-89999999998865653468988899999997998999999788
Q gi|254780903|r  624 PIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNAD-KRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTG  701 (766)
Q Consensus       624 ~~i~~~~~~~~~~~~~k~i~l~~~~~-~~l~v~~D-~~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~~~v~i~V~D~G  701 (766)
T Consensus       446 ~AL~~~~~~f~~qt---g~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~g~~~~~VeDnG  521 (574)
T COG3850         446 PALEQMLAEFSNQT---GITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQNDGQVTLTVEDNG  521 (574)
T ss_pred             HHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCEEEEEEEECC
T ss_conf             99999999997346---97388725689889987899999999999999899852-667589999865964899994288


Q ss_pred             CCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf             9789778543046505314675567788761689999999962986999979899529999735
Q gi|254780903|r  702 IGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP  765 (766)
Q Consensus       702 ~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP  765 (766)
T Consensus       522 ~Gi~~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~  567 (574)
T COG3850         522 VGIDEAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP  567 (574)
T ss_pred             CCCCCCC-----------------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEC
T ss_conf             3779756-----------------7788-72369999999972575777645999817999956