HHsearch alignment for GI: 254780903 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=100.00 E-value=9.1e-41 Score=312.27 Aligned_cols=325 Identities=15% Similarity=0.242 Sum_probs=239.9
Q ss_pred HHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEC-CCE
Q ss_conf 9999854455158834996997017898883999789428971788165201378999852112456405899916-962
Q gi|254780903|r 385 SKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEYRTSDPERSQDMSKEIKLA-DSR 463 (766)
Q Consensus 385 r~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-dg~ 463 (766)
T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~-l~~l~~~gs~ll~ll~q~~~~~~~~~~~~v~l~~~g~ 88 (363)
T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTR-LSELLPFGSLLLSLLDQVLERGQPVTEYEVTLVILGR 88 (363)
T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCC-HHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 768745578569982778289608889999997788882487-7887177728899998999835885101024420786
Q ss_pred --EEEECCE--ECCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --8742232--456997899988620100011223222222211000017889986444579999999999999999887
Q gi|254780903|r 464 --WLQINEW--CTHDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETA 539 (766)
Q Consensus 464 --~~~i~~~--~~~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ae~a 539 (766)
T Consensus 89 ~~~v~~~v~~v~~~~G~vlle~~~~--------------------------~~---------~~ridr---e~~q--~a~ 128 (363)
T COG3852 89 SHIVDLTVAPVPEEPGSVLLEFHPR--------------------------DM---------QRRLDR---EQTQ--HAQ 128 (363)
T ss_pred CCEEEEEEEECCCCCCEEEEEECHH--------------------------HH---------HHHHHH---HHHH--HHH
T ss_conf 5237899862268997489995325--------------------------77---------767669---9998--888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 89999999987675222478999999998603468899389999999999999999999777677888741983012033
Q gi|254780903|r 540 NKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQN 619 (766)
Q Consensus 540 n~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~ 619 (766)
T Consensus 129 ~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd----~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~ 200 (363)
T COG3852 129 QRAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPD----EALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVP 200 (363)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCC
T ss_conf 88999999877887228531014499999745898----67789999999999999999999875087----89855354
Q ss_pred ECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEEEC----
Q ss_conf 1699999999999999998479589998089978-998689999999998865653468----9888999999979----
Q gi|254780903|r 620 ADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKFTN----NNGKMMIRTSKIG---- 690 (766)
Q Consensus 620 ~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~t~----~~g~I~i~~~~~~---- 690 (766)
T Consensus 201 ~NIH~VLerV~~lv~~e~~~-~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i 279 (363)
T COG3852 201 VNIHEVLERVRALVEAEFAD-NVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTI 279 (363)
T ss_pred CHHHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEC
T ss_conf 31999999999998543677-55885027998853236989999999999999999716778778569997224258871
Q ss_pred ------CEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEC
Q ss_conf ------98999999788978977854304650531467556778876168999999996298699997989952999973
Q gi|254780903|r 691 ------QCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICM 764 (766)
Q Consensus 691 ------~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~L 764 (766)
T Consensus 280 ~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~V------s~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~Frvll 352 (363)
T COG3852 280 AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV------SGREGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLL 352 (363)
T ss_pred CCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEE
T ss_conf 674246631169861899998678643002302------068898661489999989852978987426894-5899986
Q ss_pred CC
Q ss_conf 59
Q gi|254780903|r 765 PQ 766 (766)
Q Consensus 765 P~ 766 (766)
T Consensus 353 P~ 354 (363)
T COG3852 353 PI 354 (363)
T ss_pred EC
T ss_conf 33