HHsearch alignment for GI: 254780903 and conserved domain: COG4564

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.27  E-value=6.6e-08  Score=74.99  Aligned_cols=181  Identities=17%  Similarity=0.240  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC---HHHHHHHHH
Q ss_conf             22247899999999860346889938999999999999999999977767788874198301203316---999999999
Q gi|254780903|r  554 LRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNAD---LIPIINEGI  630 (766)
Q Consensus       554 lrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~d---l~~~i~~~~  630 (766)
T Consensus       262 IsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~  330 (459)
T COG4564         262 ISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALL  330 (459)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH
T ss_conf             7777799999999996267799888-----750156678999989999998502------35745554430799999999


Q ss_pred             HHHHHHHHHCCCEEEEEECCCC-E-EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHH
Q ss_conf             9999999847958999808997-8-9986899999999988656534689888999999979989999997889789778
Q gi|254780903|r  631 RLIGSSAQSKNIKIEKKIPSEL-F-FNADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSA  708 (766)
Q Consensus       631 ~~~~~~~~~k~i~l~~~~~~~l-~-v~~D~~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~  708 (766)
T Consensus       331 ~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~vql~vrDnG~GF~~~~  406 (459)
T COG4564         331 EDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDMVQLMVRDNGVGFSVKE  406 (459)
T ss_pred             HHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCEEEEEECCCCCCCCHH
T ss_conf             9864---36683799970578644782788899999999987788606-8717999861577606999823899856165


Q ss_pred             HHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             5430465053146755677887616899999999629869999798995299997359
Q gi|254780903|r  709 LEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ  766 (766)
Q Consensus       709 ~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~  766 (766)
T Consensus       407 ~----------------~~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~  447 (459)
T COG4564         407 A----------------LQKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPL  447 (459)
T ss_pred             H----------------CCCCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECC
T ss_conf             3----------------167556451009999997486589975698-7279998140