HHsearch alignment for GI: 254780903 and conserved domain: COG5000

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=96.30  E-value=0.091  Score=30.68  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             99999999999999997225974598976897899978899772999433058988999760812058999999997248
Q gi|254780903|r  245 ENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKH  324 (766)
Q Consensus       245 ~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~  324 (766)
T Consensus       360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~--~-lsa~ap~~~~vf~~~-~a~~--  433 (712)
T COG5000         360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQ--S-LSAIAPELEEVFAEA-GAAA--  433 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCH--H-HHHHHHHHHHHHHHH-HHHC--
T ss_conf             878889999988999981585038997478707762601788846870676440--2-664213789999976-5403--


Q ss_pred             CCEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             984899999886989889988999999837960699999844617999999999999
Q gi|254780903|r  325 VKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEAD  381 (766)
Q Consensus       325 ~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese  381 (766)
T Consensus       434 ~~~~~~ev~~~r-~g~~rtl~Vq~t~~~~d-~~~gyVvt~DDITdLV~AQRs~AW~d  488 (712)
T COG5000         434 RTDKRVEVKLAR-EGEERTLNVQATREPED-NGNGYVVTFDDITDLVIAQRSAAWGD  488 (712)
T ss_pred             CCCCCEEEECCC-CCCCEEEEEEEEECCCC-CCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf             877420100014-78741566675321444-68856999635089999999878999