HHsearch alignment for GI: 254780903 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=409.32 Aligned_cols=347 Identities=23% Similarity=0.428 Sum_probs=276.4
Q ss_pred EECCCHHHHHHHHHHHHH-HHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHH
Q ss_conf 844617999999999999-9999999854455158834996997017898883999789428971788165201378999
Q gi|254780903|r 364 AMDLTEKYHLEKRYAEAD-QRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEY 442 (766)
Q Consensus 364 ~~DITErK~ae~~l~ese-~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (766)
T Consensus 92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d~y~~~d- 170 (459)
T COG5002 92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDTYTFED- 170 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCHHHHHCCCCCEEHHH-
T ss_conf 9789999999987678888889989998707657645778689935079998486778771653788857754302888-
Q ss_pred HHHCCCCCCCEEEEEEE-CCCEEEEEC--CEECC---CCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 85211245640589991-696287422--32456---9978999886201000112232222222110000178899864
Q gi|254780903|r 443 RTSDPERSQDMSKEIKL-ADSRWLQIN--EWCTH---DGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILE 516 (766)
Q Consensus 443 ~~~~~~~~~~~~~e~~~-~dg~~~~i~--~~~~~---dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (766)
T Consensus 171 L~---e~~~s~lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqe---------------------------- 219 (459)
T COG5002 171 LV---EKNDSLLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQE---------------------------- 219 (459)
T ss_pred HH---HCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHH----------------------------
T ss_conf 87---25982898604788637999988888511466440699873143878----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 44579999999999999999887899999999876752224789999999986034688993899999999999999999
Q gi|254780903|r 517 RQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLL 596 (766)
Q Consensus 517 ~~~~~L~~~~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~ 596 (766)
T Consensus 220 ---------------------k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d--~eiAp~Fl~vt~~ETeRMi 276 (459)
T COG5002 220 ---------------------KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWED--KEIAPRFLRVTLNETERMI 276 (459)
T ss_pred ---------------------HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------88999999988614031473678999999974687447--1232689987478899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCE-EEEEECC-CCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99777677888741983012033169999999999999999847958-9998089-978998689999999998865653
Q gi|254780903|r 597 NMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIK-IEKKIPS-ELFFNADKRIIKKILFPILSNSIK 674 (766)
Q Consensus 597 ~lI~diLd~srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~-l~~~~~~-~l~v~~D~~~l~QVl~NLi~NAik 674 (766)
T Consensus 277 RlV~DLl~lsr~d~~~~qln~e~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~K 356 (459)
T COG5002 277 RLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALK 356 (459)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 99999987725763256665788874889999999999987567788999608888648996706899999999877752
Q ss_pred CCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 46898889999999799899999978897897785430465053146755677887616899999999629869999798
Q gi|254780903|r 675 FTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQE 754 (766)
Q Consensus 675 ~t~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~ 754 (766)
T Consensus 357 YsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~ 436 (459)
T COG5002 357 YSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEE 436 (459)
T ss_pred CCCCCCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 48999739999963075899997468889984068999998852236654037877612999999999709857776045
Q ss_pred CCCEEEEEECC
Q ss_conf 99529999735
Q gi|254780903|r 755 GKGTIVTICMP 765 (766)
Q Consensus 755 g~Gttf~i~LP 765 (766)
T Consensus 437 gkgtt~~ftLP 447 (459)
T COG5002 437 GKGTTFSFTLP 447 (459)
T ss_pred CCCEEEEEEEC
T ss_conf 88617999954