HHsearch alignment for GI: 254780903 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=99.50 E-value=3.6e-13 Score=113.00 Aligned_cols=96 Identities=24% Similarity=0.382 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCC-CCCCCHH
Q ss_conf 8999999999886565346---89888999999979989999997889789778543046505314675567-7887616
Q gi|254780903|r 658 KRIIKKILFPILSNSIKFT---NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQS-IGGFGLG 733 (766)
Q Consensus 658 ~~~l~QVl~NLi~NAik~t---~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~-~~GtGLG 733 (766)
T Consensus 37 ~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~--~~~~~~P~~t-----~~~~~~~~GlG 109 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIED--VEEARQPLFT-----TKPELERSGMG 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCC--HHHCCCCCCC-----CCCCCCCCCHH
T ss_conf 9999999999999999860367999279999998099999999973789473--7664388776-----68766756405
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCEEEEEEC
Q ss_conf 8999999996298699997989952999973
Q gi|254780903|r 734 LAISDALTNLHGGRLKIISQEGKGTIVTICM 764 (766)
Q Consensus 734 LaI~k~iVe~hgG~I~v~S~~g~Gttf~i~L 764 (766)
T Consensus 110 l~li~~Lm----DeVei~s~~g~GTtV~m~k 136 (146)
T PRK03660 110 FTFMESFM----DEVEVESEPGKGTTIRMKK 136 (146)
T ss_pred HHHHHHHC----CEEEEEECCCCCEEEEEEE
T ss_conf 89999838----8699995599978999999