HHsearch alignment for GI: 254780903 and conserved domain: PRK03660

>PRK03660 anti-sigma F factor; Provisional.
Probab=99.50  E-value=3.6e-13  Score=113.00  Aligned_cols=96  Identities=24%  Similarity=0.382  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCC-CCCCCHH
Q ss_conf             8999999999886565346---89888999999979989999997889789778543046505314675567-7887616
Q gi|254780903|r  658 KRIIKKILFPILSNSIKFT---NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQS-IGGFGLG  733 (766)
Q Consensus       658 ~~~l~QVl~NLi~NAik~t---~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~-~~GtGLG  733 (766)
T Consensus        37 ~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~--~~~~~~P~~t-----~~~~~~~~GlG  109 (146)
T PRK03660         37 LTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIED--VEEARQPLFT-----TKPELERSGMG  109 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCC--HHHCCCCCCC-----CCCCCCCCCHH
T ss_conf             9999999999999999860367999279999998099999999973789473--7664388776-----68766756405


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCEEEEEEC
Q ss_conf             8999999996298699997989952999973
Q gi|254780903|r  734 LAISDALTNLHGGRLKIISQEGKGTIVTICM  764 (766)
Q Consensus       734 LaI~k~iVe~hgG~I~v~S~~g~Gttf~i~L  764 (766)
T Consensus       110 l~li~~Lm----DeVei~s~~g~GTtV~m~k  136 (146)
T PRK03660        110 FTFMESFM----DEVEVESEPGKGTTIRMKK  136 (146)
T ss_pred             HHHHHHHC----CEEEEEECCCCCEEEEEEE
T ss_conf             89999838----8699995599978999999