HHsearch alignment for GI: 254780903 and conserved domain: PRK09835
>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00 E-value=0 Score=411.19 Aligned_cols=241 Identities=18% Similarity=0.321 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998878999999998767522247899999999860346889938999999999999999999977
Q gi|254780903|r 521 ELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600 (766)
Q Consensus 521 ~L~~~~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~ 600 (766)
T Consensus 240 El~~La~~fN~M~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~---~~~~~~~~~~l~~~~~e~~rl~~lv~ 316 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQ---SRSQKELEDVLYSNLEELTRMAKMVS 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999999999999999998898718999999999998538---99869999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 76778887419830120331699999999999999998479589998089978998689999999998865653468988
Q gi|254780903|r 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRIIKKILFPILSNSIKFTNNNG 680 (766)
Q Consensus 601 diLd~srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~v~~D~~~l~QVl~NLi~NAik~t~~~g 680 (766)
T Consensus 317 ~lL~lar~e~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~v~~d~~~l~~~l~NLl~NAikys~~g~ 395 (482)
T PRK09835 317 DMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVG-DPCQVAGDPLMLRRALSNLLSNALRYTPEGE 395 (482)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC-CCEEEEECHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999987743588766673456999999999999999986892899827-8708998799999999999999998489998
Q ss_pred EEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 89999999799899999978897897785430465053146755677887616899999999629869999798995299
Q gi|254780903|r 681 KMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIV 760 (766)
Q Consensus 681 ~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf 760 (766)
T Consensus 396 ~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f 474 (482)
T PRK09835 396 AIVVRCQTVDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRF 474 (482)
T ss_pred EEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEE
T ss_conf 6999999829989999996587889899987667975189888899994648999999999982998999963-991899
Q ss_pred EEECCC
Q ss_conf 997359
Q gi|254780903|r 761 TICMPQ 766 (766)
Q Consensus 761 ~i~LP~ 766 (766)
T Consensus 475 ~i~lPr 480 (482)
T PRK09835 475 VISLPR 480 (482)
T ss_pred EEEEEC
T ss_conf 999307