HHsearch alignment for GI: 254780903 and conserved domain: PRK10618
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.
Probab=99.93 E-value=1.6e-21 Score=173.25 Aligned_cols=327 Identities=18% Similarity=0.254 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEC-CCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999985445515883-49969970178988839997894289717881652013789998521124564
Q gi|254780903|r 374 EKRYAEADQRLSKAIECTSEALVLWD-KNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEYRTSDPERSQD 452 (766)
Q Consensus 374 e~~l~ese~rlr~~ie~~~~~i~~~D-~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (766)
T Consensus 335 ~~eL~~~~~l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLLPhl~--------LqkI~~---MA~-qH~GvIQ~tInN 402 (881)
T PRK10618 335 SGELRILRAINEEIVSLLPLGLLVYDFSSNRTVISNKIADHLLPHLN--------LQKITT---MAE-QHQGVIQATINN 402 (881)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCCCCC--------HHHHHH---HHH-HHCCEEEEEECC
T ss_conf 88999998868889854875069997468957730267886557667--------899999---999-737868998836
Q ss_pred EEEEEEECCCEEEEECCEECCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05899916962874223245699789998862010001122322222221100001788998644457999999999999
Q gi|254780903|r 453 MSKEIKLADSRWLQINEWCTHDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVE 532 (766)
Q Consensus 453 ~~~e~~~~dg~~~~i~~~~~~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 532 (766)
T Consensus 403 evYEIr~~rSq--------~~p~T~LFi------i~D----------------qD----kE---------vLvnKkLq~A 439 (881)
T PRK10618 403 ELYEIRMFRSQ--------VAPRTQLFI------IRD----------------QD----RE---------VLVNKKLQQA 439 (881)
T ss_pred EEEEEEEEECC--------CCCCEEEEE------EEC----------------CC----HH---------HHHHHHHHHH
T ss_conf 06788854225--------787537999------975----------------75----89---------9988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998878999999998767522247899999999860346889938999999999999999999977767788874198
Q gi|254780903|r 533 KERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEK 612 (766)
Q Consensus 533 ~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~ 612 (766)
T Consensus 440 qreYeKN~qaRk~~l~Ni~~el~~Pl~~l~~~~~~l~~~----~-~---~~~l~~L~~qs~~i~~lidnI~Lln~LEsq~ 511 (881)
T PRK10618 440 QREYEKNQQARRAFLQNIGDELKEPVQSLAELAAQLNAP----E-S---QQLLKQLAEQADVLVRLIDNIQLANMLENDE 511 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----C-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999986699999999999999877899999999986252----4-4---6799999999999999998899998886056
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECC--CCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-
Q ss_conf 30120331699999999999999998479589998089--978998689999999998865653468988899999997-
Q gi|254780903|r 613 ISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPS--ELFFNADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKI- 689 (766)
Q Consensus 613 ~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~--~l~v~~D~~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~- 689 (766)
T Consensus 512 W~~~~~~Fsl~~Lid~~l~e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT-~~GKItl~v~~~~ 590 (881)
T PRK10618 512 WKSEQTLFSLQDLIDEVVPEVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTT-QYGKITLEVDQDE 590 (881)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCC
T ss_conf 765677104999999999987689874270333234798899704789999999999998881114-4525999982587
Q ss_pred --CCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf --9989999997889789778543046505314675567788761689999999962986999979899529999735
Q gi|254780903|r 690 --GQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765 (766)
Q Consensus 690 --~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP 765 (766)
T Consensus 591 ~~~~~l~i~i~DTG~Gls~~El~Nl~~PFl-~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp 667 (881)
T PRK10618 591 SSEERLTFRILDTGEGVSIHEIDNLHFPFL-NQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLK 667 (881)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCC-CCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEC
T ss_conf 778638999954788878888855379776-83122111378872999999999984896788415677664799842