HHsearch alignment for GI: 254780903 and conserved domain: PRK10755

>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00  E-value=0  Score=371.90  Aligned_cols=234  Identities=18%  Similarity=0.328  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57999999999999999988789999999987675222478999999998603468899389999999999999999999
Q gi|254780903|r  519 KTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNM  598 (766)
Q Consensus       519 ~~~L~~~~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~l  598 (766)
T Consensus       119 ~dEl~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-----~----~~~~~~~~i~rl~~l  189 (355)
T PRK10755        119 TLEIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH-----I----DVAPLIARLDQMMHS  189 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----C----CHHHHHHHHHHHHHH
T ss_conf             7189999999999999999999999999997577740389999999999737575-----3----199999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEC-HHHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf             77767788874198301203316-9999999999999999847958999808-997899868999999999886565346
Q gi|254780903|r  599 INNILEMSKIETEKISIDKQNAD-LIPIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNADKRIIKKILFPILSNSIKFT  676 (766)
Q Consensus       599 I~diLd~srieag~~~~~~~~~d-l~~~i~~~~~~~~~~~~~k~i~l~~~~~-~~l~v~~D~~~l~QVl~NLi~NAik~t  676 (766)
T Consensus       190 i~~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys  269 (355)
T PRK10755        190 VSQLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYS  269 (355)
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf             99999998588864345442132599999999999999999759959996588771899689999999999999899748


Q ss_pred             CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC-C
Q ss_conf             898889999999799899999978897897785430465053146755677887616899999999629869999798-9
Q gi|254780903|r  677 NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQE-G  755 (766)
Q Consensus       677 ~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~-g  755 (766)
T Consensus       270 ~~g~~I~I~l~~~~-~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~g  344 (355)
T PRK10755        270 PEGSNITIKLQEDG-GAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQER  344 (355)
T ss_pred             CCCCEEEEEEEECC-CEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99976999999779-889999987999897999885588613899----9998758999999999991998999987989


Q ss_pred             CCEEEEEECCC
Q ss_conf             95299997359
Q gi|254780903|r  756 KGTIVTICMPQ  766 (766)
Q Consensus       756 ~Gttf~i~LP~  766 (766)
T Consensus       345 gGt~~~v~LPk  355 (355)
T PRK10755        345 SGTRAWVWLKK  355 (355)
T ss_pred             CEEEEEEEECC
T ss_conf             87899999479