HHsearch alignment for GI: 254780903 and conserved domain: PRK10755
>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00 E-value=0 Score=371.90 Aligned_cols=234 Identities=18% Similarity=0.328 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999988789999999987675222478999999998603468899389999999999999999999
Q gi|254780903|r 519 KTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNM 598 (766)
Q Consensus 519 ~~~L~~~~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~l 598 (766)
T Consensus 119 ~dEl~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-----~----~~~~~~~~i~rl~~l 189 (355)
T PRK10755 119 TLEIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH-----I----DVAPLIARLDQMMHS 189 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----C----CHHHHHHHHHHHHHH
T ss_conf 7189999999999999999999999999997577740389999999999737575-----3----199999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEC-HHHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf 77767788874198301203316-9999999999999999847958999808-997899868999999999886565346
Q gi|254780903|r 599 INNILEMSKIETEKISIDKQNAD-LIPIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNADKRIIKKILFPILSNSIKFT 676 (766)
Q Consensus 599 I~diLd~srieag~~~~~~~~~d-l~~~i~~~~~~~~~~~~~k~i~l~~~~~-~~l~v~~D~~~l~QVl~NLi~NAik~t 676 (766)
T Consensus 190 i~~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys 269 (355)
T PRK10755 190 VSQLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYS 269 (355)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998588864345442132599999999999999999759959996588771899689999999999999899748
Q ss_pred CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC-C
Q ss_conf 898889999999799899999978897897785430465053146755677887616899999999629869999798-9
Q gi|254780903|r 677 NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQE-G 755 (766)
Q Consensus 677 ~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~-g 755 (766)
T Consensus 270 ~~g~~I~I~l~~~~-~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~g 344 (355)
T PRK10755 270 PEGSNITIKLQEDG-GAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQER 344 (355)
T ss_pred CCCCEEEEEEEECC-CEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99976999999779-889999987999897999885588613899----9998758999999999991998999987989
Q ss_pred CCEEEEEECCC
Q ss_conf 95299997359
Q gi|254780903|r 756 KGTIVTICMPQ 766 (766)
Q Consensus 756 ~Gttf~i~LP~ 766 (766)
T Consensus 345 gGt~~~v~LPk 355 (355)
T PRK10755 345 SGTRAWVWLKK 355 (355)
T ss_pred CEEEEEEEECC
T ss_conf 87899999479