HHsearch alignment for GI: 254780903 and conserved domain: PRK10935

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.84  E-value=3.9e-17  Score=141.62  Aligned_cols=190  Identities=20%  Similarity=0.279  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf             9876752224789999999----986034688993899999999999999999997776778887419830120331699
Q gi|254780903|r  548 AKMSHELRTPLNAILGFSE----VIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI  623 (766)
Q Consensus       548 a~isHelrtPL~aI~g~~e----ll~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~  623 (766)
T Consensus       366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fR-----l--~l~~~~L~  438 (568)
T PRK10935        366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFR-----L--TIQEANLG  438 (568)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----C--CCCCCCHH
T ss_conf             8999984412665789999999999987422565388999999999999999999999999832-----2--67756879


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEECH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEEC
Q ss_conf             99999999999999847958999808-997899868-99999999988656534689888999999979-9899999978
Q gi|254780903|r  624 PIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNADK-RIIKKILFPILSNSIKFTNNNGKMMIRTSKIG-QCVIITIADT  700 (766)
Q Consensus       624 ~~i~~~~~~~~~~~~~k~i~l~~~~~-~~l~v~~D~-~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~-~~v~i~V~D~  700 (766)
T Consensus       439 ~AL~~~~~~~~~q---~~~~i~l~~~l~~~~l~~~~~i~llrIvqEALtN~~KHA-~A~~V~V~~~~~~~~~v~l~V~Dn  514 (568)
T PRK10935        439 SALEEMLDQLRNQ---TSAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHA-NASEIAVSCVTNPDGEVTVSIRDD  514 (568)
T ss_pred             HHHHHHHHHHHHH---CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCEEEEEEEEC
T ss_conf             9999999999751---194699970688777888899999999999999999808-998799999974898799999779


Q ss_pred             CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             897897785430465053146755677887616899999999629869999798995299997359
Q gi|254780903|r  701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ  766 (766)
Q Consensus       701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~  766 (766)
T Consensus       515 G~Gf~~~~-----------------~-~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~  562 (568)
T PRK10935        515 GVGIGELK-----------------E-PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPS  562 (568)
T ss_pred             CCCCCCCC-----------------C-CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf             94789878-----------------8-899857599999999669989999779996699998589