HHsearch alignment for GI: 254780903 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=97.03 E-value=0.03 Score=34.16 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCEEEE
Q ss_conf 9999999967688899989999999999998501001122355489999999998853101789-789999699808997
Q gi|254780903|r 65 TSSIIKVTTRYAQQEKMTNQTSLMLTEAIEIIFQNNNIKFDLASQKKAESMLGQLLAKTRFLSE-SFILLAQPNELVFAS 143 (766)
Q Consensus 65 ~~~~~~i~~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~d~~~~~~ae~~L~~~~~~~~~~~~-~~i~i~d~~g~i~~~ 143 (766)
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~A~~vA~~---p~v~~~~~~-~~~~~~lq~~~~~ir~~~~~~fIvv~d~~gi-r~s 108 (541)
T PRK11086 34 VVHLLYFSQISDMTRDGLAEKALAVARTVADS---PIVIQGLQK-KPQESGIQTYAEAVRKRNDLLFIVVTDMQGI-RYS 108 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCE-EEE
T ss_conf 99999999999999999999999999999769---689998618-9960889999999999729829999869971-853
Q ss_pred CCCHHHHCCCCHHHHCCCCHHHHCCCCCCCHHHHHCCCCHHEEEEEECCCCC----CEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 1420555199788960761043205443320232115310000123315778----259999742321012345565545
Q gi|254780903|r 144 STKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNS----GSILIINSRVPLLRLWREEVTLEV 219 (766)
Q Consensus 144 n~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~ 219 (766)
T Consensus 109 Hp~-~~~iG~~~~g--~d~~~aL~g~~~~s~~~Gtl--G~s~r~~~Pv~~~~g~~iG~V~VG~~~~~i~~~~-~~~~~-- 180 (541)
T PRK11086 109 HPN-PQKIGKPFIG--GDELPALQGKENVSINRGTL--GQSLRVFTPVYDENGKQIGVVAVGISLSEVTQQI-NESRW-- 180 (541)
T ss_pred CCC-HHHCCCCCCC--CCHHHHHCCCCEEEEEECCC--CCEEEEEECCCCCCCCEEEEEEEEECHHHHHHHH-HHHHH--
T ss_conf 899-7886997768--87678857763599961455--6457998551838997899999981188899999-99999--
Q ss_pred HHHHHHHHHHHH-HHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHH
Q ss_conf 687887899999-999888--899999---99999999999999999722597459897689789997889977299943
Q gi|254780903|r 220 VFFSIISALLLF-ILFSYY--RQAKKN---KENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYE 293 (766)
Q Consensus 220 ~~~~~~~~~~~~-~~~a~~--~dit~~---r~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~ 293 (766)
T Consensus 181 ~i~~~~~~~lllg~~~a~~lar~ikr~l~glEP~eIa~l~~er-~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~ 259 (541)
T PRK11086 181 SIYWSILFGALVGLIGAVILVRVLKKILFGLEPYEISTLFEQR-QAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQ 259 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCC
T ss_conf 9999999999999999999999999986379999999999999-999853001699975898799984999987433588
Q ss_pred H-CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHH
Q ss_conf 3-058988999760812058999999997248984899999886989889988999999837960699999844617999
Q gi|254780903|r 294 N-KTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYH 372 (766)
Q Consensus 294 e-~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ 372 (766)
T Consensus 260 ~~~~~g-~~~~~-~~~~~~-----l~~vl~~~~~~~d~e~~~---~~~~--l~~~~~pi~~~g~~~G~V~~~rD~TE~~~ 327 (541)
T PRK11086 260 EDDPLS-TDVHS-WSPVSR-----LKEVLRTGTPRRDEEINI---NGRL--LLTNTVPVRVNGEIIGAISTFRDKTEVRQ 327 (541)
T ss_pred CCCCCC-CCHHH-HCCCHH-----HHHHHHCCCCCCEEEEEE---CCEE--EEEEEEEEEECCEEEEEEEEEECHHHHHH
T ss_conf 743125-51777-275455-----999984488531079998---9989--99997776548906899999844278999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780903|r 373 LEKRYAEAD 381 (766)
Q Consensus 373 ae~~l~ese 381 (766)
T Consensus 328 L~~~L~~v~ 336 (541)
T PRK11086 328 LAQRLDGVV 336 (541)
T ss_pred HHHHHHHHH
T ss_conf 999999999