HHsearch alignment for GI: 254780903 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=100.00 E-value=0 Score=507.68 Aligned_cols=235 Identities=34% Similarity=0.529 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999887899999999876752224789999999986034688993899999999999999999997776778
Q gi|254780903|r 526 NAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEM 605 (766)
Q Consensus 526 ~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~ 605 (766)
T Consensus 276 n~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~---l-~~~q~~~l~~i~~s~~~Ll~lIndiLD~ 351 (920)
T PRK11107 276 NVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP---L-TPTQRDYLQTIERSANNLLAIINDILDF 351 (920)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999664865421999999999985699---9-9999999999999999999999999999
Q ss_pred HHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EEECHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 887419830120331699999999999999998479589998089978--998689999999998865653468988899
Q gi|254780903|r 606 SKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELF--FNADKRIIKKILFPILSNSIKFTNNNGKMM 683 (766)
Q Consensus 606 srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~--v~~D~~~l~QVl~NLi~NAik~t~~~g~I~ 683 (766)
T Consensus 352 SkiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~-G~I~ 430 (920)
T PRK11107 352 SKLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTES-GNID 430 (920)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC-CCEE
T ss_conf 998459836740167899999999999999999739879999789997306538999999999999999971889-9379
Q ss_pred EEEEEEC---C--EEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 9999979---9--8999999788978977854304650531467556778876168999999996298699997989952
Q gi|254780903|r 684 IRTSKIG---Q--CVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGT 758 (766)
Q Consensus 684 i~~~~~~---~--~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gt 758 (766)
T Consensus 431 v~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS 510 (920)
T PRK11107 431 ILVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 (920)
T ss_pred EEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCE
T ss_conf 99999964798489999999970586999999785420156765445679877429999999998099179995489974
Q ss_pred EEEEECC
Q ss_conf 9999735
Q gi|254780903|r 759 IVTICMP 765 (766)
Q Consensus 759 tf~i~LP 765 (766)
T Consensus 511 ~F~Ftlp 517 (920)
T PRK11107 511 TFWFHLP 517 (920)
T ss_pred EEEEEEE
T ss_conf 8999998