HHsearch alignment for GI: 254780903 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=99.13 E-value=1.4e-08 Score=79.90 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCCCEEEEEC---CCCCEEEECCCHHHHCCCCHHHHCCCCHHHHCCCCCCCHH-----HHHCCCCHHEEEEEECCCCCCE
Q ss_conf 7897899996---9980899714205551997889607610432054433202-----3211531000012331577825
Q gi|254780903|r 126 LSESFILLAQ---PNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMS-----EASLDQQPYHVLSVNLPHNSGS 197 (766)
Q Consensus 126 ~~~~~i~i~d---~~g~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~ 197 (766)
T Consensus 36 ~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~~~~L~~p~~~~~~~~~~~~~i~~~~~~~~E~~n~rKDG~~ 115 (538)
T PRK13557 36 TTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVADVRDAIAERREIATEILNYRKDGSS 115 (538)
T ss_pred HCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCE
T ss_conf 07973899358999987999839999987959999869998770898899999999999997599368799998799999
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999742321012345565545687887899999999888899999999999999999
Q gi|254780903|r 198 ILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLEANI 255 (766)
Q Consensus 198 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~ae~~l~ese~ 255 (766)
T Consensus 116 ~w~~~~i~pv~d~~G~~~----------------~~~~i~~DITerk~~E~~L~qaqk 157 (538)
T PRK13557 116 FWNALFVSPVYNDAGDLV----------------YFFGSQLDVSRRRDAEDALRQAQK 157 (538)
T ss_pred EEEEEEEEEEECCCCCEE----------------EEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999989999998999999----------------999988344499999999999999