HHsearch alignment for GI: 254780903 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.14  E-value=0.00017  Score=50.31  Aligned_cols=125  Identities=11%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             HHCCCCCEEEEEC---CCCCEEEECCCHHHHCCCCHHHHCCCCHHHHCCCC----CCCHHHHHC-CCCHHEEEEEECCCC
Q ss_conf             1017897899996---99808997142055519978896076104320544----332023211-531000012331577
Q gi|254780903|r  123 TRFLSESFILLAQ---PNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSK----TVQMSEASL-DQQPYHVLSVNLPHN  194 (766)
Q Consensus       123 ~~~~~~~~i~i~d---~~g~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~~~~  194 (766)
T Consensus       163 a~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~ve~r~~r~d  242 (674)
T PRK13558        163 ALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQVVLRNYRRD  242 (674)
T ss_pred             HHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             66405725998468888874388601236531898178649740121068888057999999975588633453331468


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             825999974232101234556554568788789999999988889999999999999999999999722
Q gi|254780903|r  195 SGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLEANICVETALSR  263 (766)
Q Consensus       195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~ae~~l~ese~rl~~al~~  263 (766)
T Consensus       243 G~~~w~~~~i~pi~De--------------dg~v~~~--Vg~~~DiteRke~E~~L~~~~~~l~~~L~R  295 (674)
T PRK13558        243 GSLFWNQVDISPIYDE--------------DGTVSHY--VGFQMDVSERMAAQQELQGERQSLDRLLDR  295 (674)
T ss_pred             CCEEEEECCCCCCCCC--------------CCCEEEE--EEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8378741245521057--------------8858999--862144778899999999868899999999