HHsearch alignment for GI: 254780903 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.14 E-value=0.00017 Score=50.31 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=70.2
Q ss_pred HHCCCCCEEEEEC---CCCCEEEECCCHHHHCCCCHHHHCCCCHHHHCCCC----CCCHHHHHC-CCCHHEEEEEECCCC
Q ss_conf 1017897899996---99808997142055519978896076104320544----332023211-531000012331577
Q gi|254780903|r 123 TRFLSESFILLAQ---PNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSK----TVQMSEASL-DQQPYHVLSVNLPHN 194 (766)
Q Consensus 123 ~~~~~~~~i~i~d---~~g~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~~~~ 194 (766)
T Consensus 163 a~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq~~~~~~e~~~~~~~ai~~~~~~~ve~r~~r~d 242 (674)
T PRK13558 163 ALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQVVLRNYRRD 242 (674)
T ss_pred HHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 66405725998468888874388601236531898178649740121068888057999999975588633453331468
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 825999974232101234556554568788789999999988889999999999999999999999722
Q gi|254780903|r 195 SGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLEANICVETALSR 263 (766)
Q Consensus 195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~ae~~l~ese~rl~~al~~ 263 (766)
T Consensus 243 G~~~w~~~~i~pi~De--------------dg~v~~~--Vg~~~DiteRke~E~~L~~~~~~l~~~L~R 295 (674)
T PRK13558 243 GSLFWNQVDISPIYDE--------------DGTVSHY--VGFQMDVSERMAAQQELQGERQSLDRLLDR 295 (674)
T ss_pred CCEEEEECCCCCCCCC--------------CCCEEEE--EEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8378741245521057--------------8858999--862144778899999999868899999999