HHsearch alignment for GI: 254780903 and conserved domain: TIGR01925
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.44 E-value=1e-06 Score=66.38 Aligned_cols=94 Identities=24% Similarity=0.333 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCC-CCCHHH
Q ss_conf 9999999998865653468---988899999997998999999788978977854304650531467556778-876168
Q gi|254780903|r 659 RIIKKILFPILSNSIKFTN---NNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGL 734 (766)
Q Consensus 659 ~~l~QVl~NLi~NAik~t~---~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~-GtGLGL 734 (766)
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI--~~lE~A~~PLy-----TskPeLERSGMGF 110 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGI--ENLEEAREPLY-----TSKPELERSGMGF 110 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCH--HHHHHHCCCCC-----CCCCCCCCCCCCE
T ss_conf 5554333223212053145637997789999960548999986467572--33785326645-----7998722067860
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999999629869999798995299997
Q gi|254780903|r 735 AISDALTNLHGGRLKIISQEGKGTIVTIC 763 (766)
Q Consensus 735 aI~k~iVe~hgG~I~v~S~~g~Gttf~i~ 763 (766)
T Consensus 111 TvM----E~FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 111 TVM----ESFMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred EEE----CCCCCCEEEEECCCCCCEEEEE
T ss_conf 121----1124512686238998468875