HHsearch alignment for GI: 254780903 and conserved domain: TIGR01925

>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.44  E-value=1e-06  Score=66.38  Aligned_cols=94  Identities=24%  Similarity=0.333  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCC-CCCHHH
Q ss_conf             9999999998865653468---988899999997998999999788978977854304650531467556778-876168
Q gi|254780903|r  659 RIIKKILFPILSNSIKFTN---NNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGL  734 (766)
Q Consensus       659 ~~l~QVl~NLi~NAik~t~---~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~-GtGLGL  734 (766)
T Consensus        38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~~~~v~D~G~GI--~~lE~A~~PLy-----TskPeLERSGMGF  110 (137)
T TIGR01925        38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEVSITVRDEGIGI--ENLEEAREPLY-----TSKPELERSGMGF  110 (137)
T ss_pred             HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEEEEEEEECCCCH--HHHHHHCCCCC-----CCCCCCCCCCCCE
T ss_conf             5554333223212053145637997789999960548999986467572--33785326645-----7998722067860


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99999999629869999798995299997
Q gi|254780903|r  735 AISDALTNLHGGRLKIISQEGKGTIVTIC  763 (766)
Q Consensus       735 aI~k~iVe~hgG~I~v~S~~g~Gttf~i~  763 (766)
T Consensus       111 TvM----E~FMD~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       111 TVM----ESFMDDVEVDSEKEKGTKIILK  135 (137)
T ss_pred             EEE----CCCCCCEEEEECCCCCCEEEEE
T ss_conf             121----1124512686238998468875