HHsearch alignment for GI: 254780903 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.51  E-value=7.4e-06  Score=60.20  Aligned_cols=275  Identities=14%  Similarity=0.161  Sum_probs=162.1

Q ss_pred             CCCEEEEECCCCCEEEE--CC------CHHHHCCCCHHHHCCCCHHHHCC-----CCCCC-------HHHHHCC---CCH
Q ss_conf             89789999699808997--14------20555199788960761043205-----44332-------0232115---310
Q gi|254780903|r  127 SESFILLAQPNELVFAS--ST------KNSHYIGKKIGEIIPELSRSRSR-----SKTVQ-------MSEASLD---QQP  183 (766)
Q Consensus       127 ~~~~i~i~d~~g~i~~~--n~------~~~~~~G~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~l~---~~~  183 (766)
T Consensus         5 ~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~~ElP   84 (453)
T TIGR02040         5 AADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSDLELP   84 (453)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             47703555178707764428855241413024588444413577899999999714688885777766541179997244


Q ss_pred             HEEEEEECCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             0001233157---78259999742321012345565545687887899999999888899999999----9999999999
Q gi|254780903|r  184 YHVLSVNLPH---NSGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKEN----DTILLEANIC  256 (766)
Q Consensus       184 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~a----e~~l~ese~r  256 (766)
T Consensus        85 ~~F~~~~L~~sdGk~~~vLa~Grd------Lr~vA~l-------------------qq~lv~AQ~AmErDYW~lR~~EtR  139 (453)
T TIGR02040        85 MEFVLVRLGASDGKDEGVLALGRD------LRAVAEL-------------------QQRLVEAQQAMERDYWKLREMETR  139 (453)
T ss_pred             EEEEEECCCCCCCCCCCEEEECCC------CHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             034676167878888735888465------2478999-------------------999999987888879998667544


Q ss_pred             HHHHHHCCCCCEEEEECCCCEEE-ECHHHHHHCCCCHH--HCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             99997225974598976897899-97889977299943--3058988999760812058999999997248984899999
Q gi|254780903|r  257 VETALSRGRCGLWNFNFDNKKFH-LSRSMYEIMGIPYE--NKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFH  333 (766)
Q Consensus       257 l~~al~~a~~GiWd~D~~~~~i~-ws~~~~~llG~~~~--e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~R  333 (766)
T Consensus       140 YR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG-~~~~~e~~~~~~~~l~~~l~~~~atg~A--~~~~  216 (453)
T TIGR02040       140 YRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVG-REFPQELEEREREELELLLREVRATGKA--AEVR  216 (453)
T ss_pred             HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHC-CHHHCCCCCCCHHHHHHHHHHHHHCCCC--CCCE
T ss_conf             433541148867998536534778679999985026775012311-1343146645436899999864301577--8717


Q ss_pred             EECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHHHH
Q ss_conf             88698988998899999983796069999984461799999999999999999998544551588349969970178988
Q gi|254780903|r  334 MRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQK  413 (766)
Q Consensus       334 i~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~  413 (766)
T Consensus       217 i~l~~~~~~~~-v~~s~~r-~~~~~~fL~~l~~~~~~~~~~~~~s~-~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~  293 (453)
T TIGR02040       217 ILLAESRKELL-VVVSLFR-QDSESLFLVRLSPAGASAAVGDVLSE-NSMLAKLVEEAPDAIVVVDADGRIKRANEAFLE  293 (453)
T ss_pred             EEECCCCCCEE-EEEEEEE-CCCCCHHHEEECCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             87457887317-8877640-23664101130311244677776674-278999997429879997788732888899998


Q ss_pred             HHCCCHHHHCCCCCHHHHC
Q ss_conf             8399978942897178816
Q gi|254780903|r  414 AYGLPDHVLVPGNARSIIQ  432 (766)
Q Consensus       414 ~~g~~~~~~~~~~~~~~~~  432 (766)
T Consensus       294 l~~~ss~~~v~G~~L~~wL  312 (453)
T TIGR02040       294 LVEVSSKEAVRGRTLDRWL  312 (453)
T ss_pred             HHHHCCHHHHCCCCHHHHH
T ss_conf             9871775453133235541