HHsearch alignment for GI: 254780903 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.51 E-value=7.4e-06 Score=60.20 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=162.1
Q ss_pred CCCEEEEECCCCCEEEE--CC------CHHHHCCCCHHHHCCCCHHHHCC-----CCCCC-------HHHHHCC---CCH
Q ss_conf 89789999699808997--14------20555199788960761043205-----44332-------0232115---310
Q gi|254780903|r 127 SESFILLAQPNELVFAS--ST------KNSHYIGKKIGEIIPELSRSRSR-----SKTVQ-------MSEASLD---QQP 183 (766)
Q Consensus 127 ~~~~i~i~d~~g~i~~~--n~------~~~~~~G~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~l~---~~~ 183 (766)
T Consensus 5 ~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~~ElP 84 (453)
T TIGR02040 5 AADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSDLELP 84 (453)
T ss_pred CCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 47703555178707764428855241413024588444413577899999999714688885777766541179997244
Q ss_pred HEEEEEECCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 0001233157---78259999742321012345565545687887899999999888899999999----9999999999
Q gi|254780903|r 184 YHVLSVNLPH---NSGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKEN----DTILLEANIC 256 (766)
Q Consensus 184 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~a----e~~l~ese~r 256 (766)
T Consensus 85 ~~F~~~~L~~sdGk~~~vLa~Grd------Lr~vA~l-------------------qq~lv~AQ~AmErDYW~lR~~EtR 139 (453)
T TIGR02040 85 MEFVLVRLGASDGKDEGVLALGRD------LRAVAEL-------------------QQRLVEAQQAMERDYWKLREMETR 139 (453)
T ss_pred EEEEEECCCCCCCCCCCEEEECCC------CHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 034676167878888735888465------2478999-------------------999999987888879998667544
Q ss_pred HHHHHHCCCCCEEEEECCCCEEE-ECHHHHHHCCCCHH--HCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99997225974598976897899-97889977299943--3058988999760812058999999997248984899999
Q gi|254780903|r 257 VETALSRGRCGLWNFNFDNKKFH-LSRSMYEIMGIPYE--NKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFH 333 (766)
Q Consensus 257 l~~al~~a~~GiWd~D~~~~~i~-ws~~~~~llG~~~~--e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~R 333 (766)
T Consensus 140 YR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG-~~~~~e~~~~~~~~l~~~l~~~~atg~A--~~~~ 216 (453)
T TIGR02040 140 YRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVG-REFPQELEEREREELELLLREVRATGKA--AEVR 216 (453)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHC-CHHHCCCCCCCHHHHHHHHHHHHHCCCC--CCCE
T ss_conf 433541148867998536534778679999985026775012311-1343146645436899999864301577--8717
Q ss_pred EECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHHHH
Q ss_conf 88698988998899999983796069999984461799999999999999999998544551588349969970178988
Q gi|254780903|r 334 MRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQK 413 (766)
Q Consensus 334 i~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~ 413 (766)
T Consensus 217 i~l~~~~~~~~-v~~s~~r-~~~~~~fL~~l~~~~~~~~~~~~~s~-~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~ 293 (453)
T TIGR02040 217 ILLAESRKELL-VVVSLFR-QDSESLFLVRLSPAGASAAVGDVLSE-NSMLAKLVEEAPDAIVVVDADGRIKRANEAFLE 293 (453)
T ss_pred EEECCCCCCEE-EEEEEEE-CCCCCHHHEEECCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 87457887317-8877640-23664101130311244677776674-278999997429879997788732888899998
Q ss_pred HHCCCHHHHCCCCCHHHHC
Q ss_conf 8399978942897178816
Q gi|254780903|r 414 AYGLPDHVLVPGNARSIIQ 432 (766)
Q Consensus 414 ~~g~~~~~~~~~~~~~~~~ 432 (766)
T Consensus 294 l~~~ss~~~v~G~~L~~wL 312 (453)
T TIGR02040 294 LVEVSSKEAVRGRTLDRWL 312 (453)
T ss_pred HHHHCCHHHHCCCCHHHHH
T ss_conf 9871775453133235541