HHsearch alignment for GI: 254780903 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.14 E-value=1.5e-05 Score=57.94 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=120.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH-HCCCCEEEEEEE-EECCCCCEEEEEEEEEEEEECCCEE-EEEEEEECCC---H----
Q ss_conf 8999760812058999999997-248984899999-8869898899889999998379606-9999984461---7----
Q gi|254780903|r 300 RAIARLIHYDNKKICEIARSVT-GKHVKQLDQIFH-MRHASGADIWIQVRAQMMRTISGGM-NIIGIAMDLT---E---- 369 (766)
Q Consensus 300 ~~~~~~vHPdDr~~~~~a~~~~-~~~~~~~~~e~R-i~~~DG~~~Wi~~r~~~i~d~~G~~-~~iGi~~DIT---E---- 369 (766)
T Consensus 39 ~~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~ 118 (453)
T TIGR02040 39 RRWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQR 118 (453)
T ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 84444135778999999997146888857777665411799972440346761678788887358884652478999999
Q ss_pred ----HHHHH---HHHHHHHHHHHHHHHHHHHHEEEEC-CCCEEEEECHHHHHHHCCCHH---HHCCCCCHHHHCCCHHHH
Q ss_conf ----99999---9999999999999985445515883-499699701789888399978---942897178816520137
Q gi|254780903|r 370 ----KYHLE---KRYAEADQRLSKAIECTSEALVLWD-KNDRLVMCNANYQKAYGLPDH---VLVPGNARSIIQDAQTRP 438 (766)
Q Consensus 370 ----rK~ae---~~l~ese~rlr~~ie~~~~~i~~~D-~~g~i~~~N~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~ 438 (766)
T Consensus 119 lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~ 198 (453)
T TIGR02040 119 LVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREE 198 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHH
T ss_conf 99998788887999866754443354114886799853653477867999998502677501231113431466454368
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 899985211245640589991696
Q gi|254780903|r 439 IIEYRTSDPERSQDMSKEIKLADS 462 (766)
Q Consensus 439 ~~~~~~~~~~~~~~~~~e~~~~dg 462 (766)
T Consensus 199 l~~~l~~~~atg~A~~~~i~l~~~ 222 (453)
T TIGR02040 199 LELLLREVRATGKAAEVRILLAES 222 (453)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 999998643015778717874578