HHsearch alignment for GI: 254780903 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=540.48 Aligned_cols=250 Identities=35% Similarity=0.552 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 889986444579999999999-------9999998878999999998767522247899999999860346889938999
Q gi|254780903|r 510 TSRQILERQKTELSIANAKYQ-------VEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYY 582 (766)
Q Consensus 510 ~~~~~~~~~~~~L~~~~~~l~-------~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~ 582 (766)
T Consensus 465 ~LE~~v~~RT~EL~~~N~rLN~E~~~H~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~---L-~~~Q~ 540 (1052)
T TIGR02956 465 SLEQLVAQRTQELKETNERLNAEVLNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTG---L-TSQQQ 540 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---C-CHHHH
T ss_conf 9999999988999997467639998799999999997488768874135113201136899997505899---8-88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EEECH
Q ss_conf 99999999999999997776778887419--830120331699999999999999998479589998089978--99868
Q gi|254780903|r 583 EYAQDIHYSGQHLLNMINNILEMSKIETE--KISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELF--FNADK 658 (766)
Q Consensus 583 ~~l~~I~~~~~~l~~lI~diLd~srieag--~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~--v~~D~ 658 (766)
T Consensus 541 ~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~ 620 (1052)
T TIGR02956 541 QYLQVINRSGESLLDILNDILDYSKIEAGGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDL 620 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCC
T ss_conf 99999986227899998467546776108746534556778888999999999987740372567427654278875366
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE------EEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCH
Q ss_conf 9999999998865653468988899999997998------9999997889789778543046505314675567788761
Q gi|254780903|r 659 RIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQC------VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGL 732 (766)
Q Consensus 659 ~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~~~------v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGL 732 (766)
T Consensus 621 ~riRQvL~NLvgNaIKFT~~-Gsv~l~~~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGL 698 (1052)
T TIGR02956 621 RRIRQVLINLVGNAIKFTDR-GSVVLRVSLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGL 698 (1052)
T ss_pred CHHHHHHHHHHHCCCEECCC-CEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCC
T ss_conf 13447676544132004345-2699998855888986634788886247799879998543310121013-731377650
Q ss_pred HHHHHHHHHHHCCCE---EEEEEECCCCEEEEEECC
Q ss_conf 689999999962986---999979899529999735
Q gi|254780903|r 733 GLAISDALTNLHGGR---LKIISQEGKGTIVTICMP 765 (766)
Q Consensus 733 GLaI~k~iVe~hgG~---I~v~S~~g~Gttf~i~LP 765 (766)
T Consensus 699 GLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~lp 734 (1052)
T TIGR02956 699 GLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTLP 734 (1052)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 689999999970888765016664587502212423