HHsearch alignment for GI: 254780903 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00  E-value=0  Score=540.48  Aligned_cols=250  Identities=35%  Similarity=0.552  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             889986444579999999999-------9999998878999999998767522247899999999860346889938999
Q gi|254780903|r  510 TSRQILERQKTELSIANAKYQ-------VEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYY  582 (766)
Q Consensus       510 ~~~~~~~~~~~~L~~~~~~l~-------~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~  582 (766)
T Consensus       465 ~LE~~v~~RT~EL~~~N~rLN~E~~~H~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~---L-~~~Q~  540 (1052)
T TIGR02956       465 SLEQLVAQRTQELKETNERLNAEVLNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTG---L-TSQQQ  540 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---C-CHHHH
T ss_conf             9999999988999997467639998799999999997488768874135113201136899997505899---8-88899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EEECH
Q ss_conf             99999999999999997776778887419--830120331699999999999999998479589998089978--99868
Q gi|254780903|r  583 EYAQDIHYSGQHLLNMINNILEMSKIETE--KISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELF--FNADK  658 (766)
Q Consensus       583 ~~l~~I~~~~~~l~~lI~diLd~srieag--~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~--v~~D~  658 (766)
T Consensus       541 ~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~  620 (1052)
T TIGR02956       541 QYLQVINRSGESLLDILNDILDYSKIEAGGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDL  620 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCC
T ss_conf             99999986227899998467546776108746534556778888999999999987740372567427654278875366


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE------EEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCH
Q ss_conf             9999999998865653468988899999997998------9999997889789778543046505314675567788761
Q gi|254780903|r  659 RIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQC------VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGL  732 (766)
Q Consensus       659 ~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~~~------v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGL  732 (766)
T Consensus       621 ~riRQvL~NLvgNaIKFT~~-Gsv~l~~~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGL  698 (1052)
T TIGR02956       621 RRIRQVLINLVGNAIKFTDR-GSVVLRVSLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGL  698 (1052)
T ss_pred             CHHHHHHHHHHHCCCEECCC-CEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCC
T ss_conf             13447676544132004345-2699998855888986634788886247799879998543310121013-731377650


Q ss_pred             HHHHHHHHHHHCCCE---EEEEEECCCCEEEEEECC
Q ss_conf             689999999962986---999979899529999735
Q gi|254780903|r  733 GLAISDALTNLHGGR---LKIISQEGKGTIVTICMP  765 (766)
Q Consensus       733 GLaI~k~iVe~hgG~---I~v~S~~g~Gttf~i~LP  765 (766)
T Consensus       699 GLAIs~~Lv~AM~G~GrGl~v~S~~~~GScF~F~lp  734 (1052)
T TIGR02956       699 GLAISRRLVEAMDGEGRGLGVESELGQGSCFWFTLP  734 (1052)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC
T ss_conf             689999999970888765016664587502212423