HHsearch alignment for GI: 254780903 and conserved domain: cd00075

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins.

Probab=99.94  E-value=1.2e-25  Score=203.20  Aligned_cols=102  Identities=38%  Similarity=0.661  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             999999988656534689-8889999999799899999978897897785430465053146755677887616899999
Q gi|254780903|r  661 IKKILFPILSNSIKFTNN-NGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDA  739 (766)
Q Consensus       661 l~QVl~NLi~NAik~t~~-~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~  739 (766)
T Consensus         1 l~~vl~nLl~NAik~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GlGL~i~~~   78 (103)
T cd00075           1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR--SRKGGGTGLGLSIVKK   78 (103)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHHH
T ss_conf             96999999999998678999489999998399999999977994088999760697501788--8778986505999999


Q ss_pred             HHHHCCCEEEEEEECCCCEEEEEEC
Q ss_conf             9996298699997989952999973
Q gi|254780903|r  740 LTNLHGGRLKIISQEGKGTIVTICM  764 (766)
Q Consensus       740 iVe~hgG~I~v~S~~g~Gttf~i~L  764 (766)
T Consensus        79 i~~~~~G~i~i~s~~~~Gt~~~i~l  103 (103)
T cd00075          79 LVELHGGRIEVESEPGGGTTFTITL  103 (103)
T ss_pred             HHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf             9998899899996599919999989