HHsearch alignment for GI: 254780903 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.59  E-value=1.9e-14  Score=122.21  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=97.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHH-HHHHHHHCCCCEEEEEEE
Q ss_conf             9999997225974598976897899978899772999433058988999760812058999-999997248984899999
Q gi|254780903|r  255 ICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICE-IARSVTGKHVKQLDQIFH  333 (766)
Q Consensus       255 ~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~-~a~~~~~~~~~~~~~e~R  333 (766)
T Consensus         1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   78 (112)
T pfam00989         1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIG--KSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVS   78 (112)
T ss_pred             CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9799999834246199989999999916533225863667437--52012457534399999999999819976887765


Q ss_pred             EECCCCCEEEEEEEEEEEEECCCEEEEEEEEECC
Q ss_conf             8869898899889999998379606999998446
Q gi|254780903|r  334 MRHASGADIWIQVRAQMMRTISGGMNIIGIAMDL  367 (766)
Q Consensus       334 i~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DI  367 (766)
T Consensus        79 ~~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI  112 (112)
T pfam00989        79 FRVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI  112 (112)
T ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf             2879998999999999999199999999999849