HHsearch alignment for GI: 254780903 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.90 E-value=7.4e-09 Score=81.86 Aligned_cols=93 Identities=16% Similarity=0.286 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHHH---HHCCCCCCCEEEEEE
Q ss_conf 99999998544551588349969970178988839997894289717881652013789998---521124564058999
Q gi|254780903|r 382 QRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEYR---TSDPERSQDMSKEIK 458 (766)
Q Consensus 382 ~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~ 458 (766)
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 80 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVSFR 80 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 97999998342461999899999999165332258636674375201245753439999999999981997688776528
Q ss_pred ECCC--EEEEECCEECCC
Q ss_conf 1696--287422324569
Q gi|254780903|r 459 LADS--RWLQINEWCTHD 474 (766)
Q Consensus 459 ~~dg--~~~~i~~~~~~d 474 (766)
T Consensus 81 ~~dG~~~~~~~~~~pi~d 98 (112)
T pfam00989 81 VPDGRPRHVEVRASPVRD 98 (112)
T ss_pred CCCCCEEEEEEEEEEEEC
T ss_conf 799989999999999991