HHsearch alignment for GI: 254780903 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.90  E-value=7.4e-09  Score=81.86  Aligned_cols=93  Identities=16%  Similarity=0.286  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHHH---HHCCCCCCCEEEEEE
Q ss_conf             99999998544551588349969970178988839997894289717881652013789998---521124564058999
Q gi|254780903|r  382 QRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEYR---TSDPERSQDMSKEIK  458 (766)
Q Consensus       382 ~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~  458 (766)
T Consensus         1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~   80 (112)
T pfam00989         1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVSFR   80 (112)
T ss_pred             CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             97999998342461999899999999165332258636674375201245753439999999999981997688776528


Q ss_pred             ECCC--EEEEECCEECCC
Q ss_conf             1696--287422324569
Q gi|254780903|r  459 LADS--RWLQINEWCTHD  474 (766)
Q Consensus       459 ~~dg--~~~~i~~~~~~d  474 (766)
T Consensus        81 ~~dG~~~~~~~~~~pi~d   98 (112)
T pfam00989        81 VPDGRPRHVEVRASPVRD   98 (112)
T ss_pred             CCCCCEEEEEEEEEEEEC
T ss_conf             799989999999999991