HHsearch alignment for GI: 254780903 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.67  E-value=1.3e-15  Score=130.66  Aligned_cols=88  Identities=22%  Similarity=0.344  Sum_probs=80.4

Q ss_pred             EEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHH-HHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECC
Q ss_conf             899978899772999433058988999760812058999999-9972489848999998869898899889999998379
Q gi|254780903|r  277 KFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIAR-SVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTIS  355 (766)
Q Consensus       277 ~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~-~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~  355 (766)
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~~   80 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGEYRWVEARGRPIRDEN   80 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf             99999899998499901107998899987190568899988788886058740468999815993999999999999999


Q ss_pred             CEE-EEEEEE
Q ss_conf             606-999998
Q gi|254780903|r  356 GGM-NIIGIA  364 (766)
Q Consensus       356 G~~-~~iGi~  364 (766)
T Consensus        81 G~~~~~~Gi~   90 (90)
T pfam08447        81 GKPVRVIGVA   90 (90)
T ss_pred             CCEEEEEEEC
T ss_conf             9999999689