HHsearch alignment for GI: 254780903 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=98.01  E-value=9.5e-06  Score=59.43  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999997225974598976897899978899772999433058988999760812058999999
Q gi|254780903|r  256 CVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIAR  318 (766)
Q Consensus       256 rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~  318 (766)
T Consensus         2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~~~~   62 (67)
T smart00091        2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK--SLLELIHPEDREEVQEAL   62 (67)
T ss_pred             HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHH
T ss_conf             7999999655798588699948998859999889099999599--899946998999999999