BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780903|ref|YP_003065316.1| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
(766 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 766
Score = 1582 bits (4097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/766 (100%), Positives = 766/766 (100%)
Query: 1 MENMQNILANYGLYYPGNRQKITVSSKQAFKRAYTSIISHLFSFFSSFNQTIPMISMVFL 60
MENMQNILANYGLYYPGNRQKITVSSKQAFKRAYTSIISHLFSFFSSFNQTIPMISMVFL
Sbjct: 1 MENMQNILANYGLYYPGNRQKITVSSKQAFKRAYTSIISHLFSFFSSFNQTIPMISMVFL 60
Query: 61 VFIATSSIIKVTTRYAQQEKMTNQTSLMLTEAIEIIFQNNNIKFDLASQKKAESMLGQLL 120
VFIATSSIIKVTTRYAQQEKMTNQTSLMLTEAIEIIFQNNNIKFDLASQKKAESMLGQLL
Sbjct: 61 VFIATSSIIKVTTRYAQQEKMTNQTSLMLTEAIEIIFQNNNIKFDLASQKKAESMLGQLL 120
Query: 121 AKTRFLSESFILLAQPNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLD 180
AKTRFLSESFILLAQPNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLD
Sbjct: 121 AKTRFLSESFILLAQPNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLD 180
Query: 181 QQPYHVLSVNLPHNSGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQA 240
QQPYHVLSVNLPHNSGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQA
Sbjct: 181 QQPYHVLSVNLPHNSGSILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYYRQA 240
Query: 241 KKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFR 300
KKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFR
Sbjct: 241 KKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFR 300
Query: 301 AIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNI 360
AIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNI
Sbjct: 301 AIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNI 360
Query: 361 IGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDH 420
IGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDH
Sbjct: 361 IGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDH 420
Query: 421 VLVPGNARSIIQDAQTRPIIEYRTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISV 480
VLVPGNARSIIQDAQTRPIIEYRTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISV
Sbjct: 421 VLVPGNARSIIQDAQTRPIIEYRTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISV 480
Query: 481 GTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETAN 540
GTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETAN
Sbjct: 481 GTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETAN 540
Query: 541 KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600
KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN
Sbjct: 541 KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600
Query: 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRI 660
NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRI
Sbjct: 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRI 660
Query: 661 IKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLH 720
IKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLH
Sbjct: 661 IKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLH 720
Query: 721 NQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ 766
NQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ
Sbjct: 721 NQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ 766
>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 495
Score = 164 bits (414), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 146/249 (58%), Gaps = 6/249 (2%)
Query: 521 ELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVK 580
EL +A + ++RAE N KS FLA MSHELRTPLNAILGFSEVI+ E G L +
Sbjct: 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNET 286
Query: 581 YYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSK 640
Y EY DIH SGQHLLN+IN IL++S+IE + + + LI I+ E I ++ AQ K
Sbjct: 287 YKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEK 346
Query: 641 NIKIEKKI-PSELFFNADKRIIKKILFPILSNSIKFTNNNGKMMIR---TSKIGQCVIIT 696
NI+I +KI PS AD++ +++++ +LSN++KFT G++ + TS GQ I+
Sbjct: 347 NIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY--IS 404
Query: 697 IADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGK 756
I D G GI + + + F + G GLGL I+ ++ HGG+ I S+ +
Sbjct: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464
Query: 757 GTIVTICMP 765
G V +P
Sbjct: 465 GVEVIAILP 473
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 158/267 (59%), Gaps = 19/267 (7%)
Query: 504 TINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILG 563
T++D+S +Q +K +LS A K+ AE + KS+FLA++SHE+RTPL AI+G
Sbjct: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
Query: 564 FSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI 623
FSEVIK + FG LG+ +Y EYA I SG +L+++N++L++SKIE+ K+++ + L
Sbjct: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
Query: 624 PIINEGIRLIGSSAQSKNIKIE----KKIPSELFFNADKRIIKKILFPILSNSIKFTNNN 679
++E I L+ A K I I IP L AD R +K+I ILSN+I FT +
Sbjct: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSG 722
Query: 680 GKMMIRTSKIG-QCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISD 738
G+++I T+ + VI+ + DTG+G+ LEK +PF + N G GLGL ++
Sbjct: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
Query: 739 ALTNLHGGRLKIISQEGKGTIVTICMP 765
A+ + + G+ I S KGT++ I P
Sbjct: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 148/286 (51%), Gaps = 21/286 (7%)
Query: 496 ESKRRLKATINDLSTSRQILE-------RQKTELSIANAKYQVEKERAET--------AN 540
+ ++ L+ T+ LS S +LE +T L+ N V ERA T A+
Sbjct: 509 DERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
Query: 541 KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600
+ K+ F+ +S+ELR+PL I+GF++++K G L S K +Y + I S LLN++N
Sbjct: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625
Query: 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKR 659
+IL+++ ++ + ++ L ++NE + I + NI+I+ +L F AD++
Sbjct: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
Query: 660 IIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPL 719
+ +I ILSN++ F++ ++++ ++ I ++ + G IP+ + + F +
Sbjct: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
Query: 720 HNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
N + G GLGL+I ++ NLHGG + I S + T + +P
Sbjct: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGLAISDALTNLHGGRLKII 751
V++ + DTGIG+ +EKI +PF + +G G GLGL++ + GG +
Sbjct: 582 VLVEVEDTGIGMSPDIMEKIFEPF-----FTTKKVGEGTGLGLSVVYGIIRQSGGYILPE 636
Query: 752 SQEGKGTIVTICMPQ 766
S+ GKGTI I +P+
Sbjct: 637 SEVGKGTIFRIFLPR 651
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 31.2 bits (69), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 4 MQNILANYGLYYPGNRQKITVSSK---QAFKRAYTSIISHLFSFFSSFNQTIPM 54
+ N + NY L N K++++ K Q F +A+TS I + +FFS ++I +
Sbjct: 363 LANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITV 416
>gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Length = 349
Score = 28.9 bits (63), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 133 LAQPNELVFASSTKNSHYIGKKIGEIIPELSR 164
L Q +L FA ST NSH+ + I ++P L R
Sbjct: 94 LVQAIKLYFAGSTTNSHHGIRNIDRVMPVLER 125
>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 187
Score = 24.6 bits (52), Expect = 6.7, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNL 743
+I+ G+ + + +GQ +P+ +++ + I LGL++S++++ +
Sbjct: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,973
Number of Sequences: 1233
Number of extensions: 18783
Number of successful extensions: 86
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 15
length of query: 766
length of database: 328,796
effective HSP length: 81
effective length of query: 685
effective length of database: 228,923
effective search space: 156812255
effective search space used: 156812255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)