HHsearch alignment for GI: 254780904 and conserved domain: COG4080

>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only].
Probab=98.11  E-value=3e-05  Score=52.80  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=96.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC---HHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             6899942888547999999999719980498088889999---9999985310134442001377899841255310120
Q gi|254780904|r   15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~---~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
T Consensus         3 v~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla---~k~G~~vlvf~dL~DAlevL~P~v~ll   79 (147)
T COG4080           3 VIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLA---FKLGKPVLVFPDLDDALEVLRPDVTLL   79 (147)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHH---HHHCCCEEEEHHHHHHHHHCCCCEEEE
T ss_conf             79999427755899999999713685389997125476663568899999---983994798522778997459756998


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r   92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN  171 (268)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~  171 (268)
T Consensus        80 ~~~~~~~ek~~dp~---------e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~  146 (147)
T COG4080          80 VGSASEGEKKLDPN---------EKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA  146 (147)
T ss_pred             ECCCCCCCCCCCCC---------CCCCCEEEEEEECCCCCCCHHHCCCCCCEEEE-EECCCHHH---HHHHHHHHHHHCC
T ss_conf             14764432347943---------12463379999268877586660567727999-84464178---8899999998704