HHsearch alignment for GI: 254780904 and conserved domain: COG4080
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only].
Probab=98.11 E-value=3e-05 Score=52.80 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=96.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC---HHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 6899942888547999999999719980498088889999---9999985310134442001377899841255310120
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~---~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
T Consensus 3 v~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla---~k~G~~vlvf~dL~DAlevL~P~v~ll 79 (147)
T COG4080 3 VIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLA---FKLGKPVLVFPDLDDALEVLRPDVTLL 79 (147)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHH---HHHCCCEEEEHHHHHHHHHCCCCEEEE
T ss_conf 79999427755899999999713685389997125476663568899999---983994798522778997459756998
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
T Consensus 80 ~~~~~~~ek~~dp~---------e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~ 146 (147)
T COG4080 80 VGSASEGEKKLDPN---------EKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA 146 (147)
T ss_pred ECCCCCCCCCCCCC---------CCCCCEEEEEEECCCCCCCHHHCCCCCCEEEE-EECCCHHH---HHHHHHHHHHHCC
T ss_conf 14764432347943---------12463379999268877586660567727999-84464178---8899999998704