HHsearch alignment for GI: 254780904 and conserved domain: TIGR00186

>TIGR00186 rRNA_methyl_3 RNA methyltransferase, TrmH family, group 3; InterPro: IPR004441 The RNA methyltransferase, TrmH family, group 3 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.60  E-value=3.8e-15  Score=115.07  Aligned_cols=153  Identities=16%  Similarity=0.114  Sum_probs=118.2

Q ss_pred             CCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             134-8968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r   10 NSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus        10 ~~~-~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
T Consensus       106 ~~~~~~~~~~~~~~~dp~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  185 (271)
T TIGR00186       106 SKKKNPFLLLLDEITDPHNLGAILRTAEALGADGVVLPKRRSAPLTSTVLKTSAGALEYLPLARVTNLSRTLTKLKELGF  185 (271)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             02445147886133472023467665544121102420101001001344433102343002332225889998876275


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCC-----------CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHH
Q ss_conf             1201122343034124203566655311588-----------16999945888424310001232220476787341016
Q gi|254780904|r   89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI  157 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNL  157 (268)
T Consensus       186 w~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~c~~~~~~~~~g~~~~g~~~~~~~~~d~~~~~p~~~~~~~l~~  256 (271)
T TIGR00186       186 WTLGTDLDGEDT---------PELYEKLLLKLHDLNGLCNELPLALVLGNEGEGLSRLLKKNCDFLIKIPLAGKVDSLNV  256 (271)
T ss_pred             EEEEECCCCHHH---------HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCHHH
T ss_conf             478613442012---------45666554333322212311132457637653213455530661676035666320024


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             88999999999996
Q gi|254780904|r  158 SQAVLLMVWECMEN  171 (268)
Q Consensus       158 S~AvaIvlYEl~r~  171 (268)
T Consensus       257 ~~~~g~~~~~~~~~  270 (271)
T TIGR00186       257 SVAAGILLFEIKRQ  270 (271)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             66778787766523