HHsearch alignment for GI: 254780904 and conserved domain: TIGR00186
>TIGR00186 rRNA_methyl_3 RNA methyltransferase, TrmH family, group 3; InterPro: IPR004441 The RNA methyltransferase, TrmH family, group 3 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.60 E-value=3.8e-15 Score=115.07 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=118.2
Q ss_pred CCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 134-8968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~-~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
T Consensus 106 ~~~~~~~~~~~~~~~dp~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (271)
T TIGR00186 106 SKKKNPFLLLLDEITDPHNLGAILRTAEALGADGVVLPKRRSAPLTSTVLKTSAGALEYLPLARVTNLSRTLTKLKELGF 185 (271)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 02445147886133472023467665544121102420101001001344433102343002332225889998876275
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCC-----------CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHH
Q ss_conf 1201122343034124203566655311588-----------16999945888424310001232220476787341016
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNL 157 (268)
T Consensus 186 w~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~c~~~~~~~~~g~~~~g~~~~~~~~~d~~~~~p~~~~~~~l~~ 256 (271)
T TIGR00186 186 WTLGTDLDGEDT---------PELYEKLLLKLHDLNGLCNELPLALVLGNEGEGLSRLLKKNCDFLIKIPLAGKVDSLNV 256 (271)
T ss_pred EEEEECCCCHHH---------HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCHHH
T ss_conf 478613442012---------45666554333322212311132457637653213455530661676035666320024
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88999999999996
Q gi|254780904|r 158 SQAVLLMVWECMEN 171 (268)
Q Consensus 158 S~AvaIvlYEl~r~ 171 (268)
T Consensus 257 ~~~~g~~~~~~~~~ 270 (271)
T TIGR00186 257 SVAAGILLFEIKRQ 270 (271)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 66778787766523