Query gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 268
No_of_seqs 177 out of 3436
Neff 7.7
Searched_HMMs 39220
Date Mon May 30 00:43:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780904.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0565 LasT rRNA methylase [T 100.0 0 0 443.9 22.5 236 13-252 3-238 (242)
2 TIGR00050 rRNA_methyl_1 RNA me 100.0 0 0 436.6 19.1 237 13-251 3-253 (253)
3 PRK10433 putative RNA methyltr 100.0 0 0 415.8 20.4 227 14-252 2-228 (228)
4 PRK10358 putative tRNA/rRNA me 100.0 1.7E-34 4.4E-39 236.8 11.3 147 15-176 2-152 (157)
5 COG0566 SpoU rRNA methylases [ 100.0 8.4E-33 2.1E-37 226.2 10.9 152 12-173 107-258 (260)
6 PRK11181 23S rRNA (guanosine-2 100.0 3.4E-32 8.7E-37 222.4 12.4 153 10-173 90-243 (244)
7 PRK10864 putative methyltransf 100.0 7.2E-32 1.8E-36 220.3 12.2 151 11-173 197-347 (348)
8 pfam00588 SpoU_methylase SpoU 100.0 3.8E-32 9.8E-37 222.1 10.1 137 14-166 1-142 (142)
9 PRK11081 tRNA guanosine-2'-O-m 100.0 5.4E-31 1.4E-35 214.8 13.7 164 1-176 1-169 (229)
10 COG0219 CspR Predicted rRNA me 99.9 4.6E-26 1.2E-30 183.8 11.9 147 14-175 2-152 (155)
11 TIGR00185 rRNA_methyl_2 RNA me 99.9 2.7E-26 7E-31 185.2 6.7 154 15-176 2-159 (161)
12 KOG2506 consensus 99.9 1.1E-22 2.8E-27 162.6 8.7 149 10-171 213-370 (371)
13 KOG0838 consensus 99.7 7.1E-17 1.8E-21 126.0 10.6 149 15-170 112-269 (271)
14 TIGR00186 rRNA_methyl_3 RNA me 99.6 3.8E-15 9.7E-20 115.1 8.8 153 10-171 106-270 (271)
15 KOG0839 consensus 99.3 4.3E-12 1.1E-16 95.8 4.4 158 6-173 1318-1476(1477)
16 pfam09936 DUF2168 Uncharacteri 98.3 1.3E-06 3.3E-11 61.4 5.3 135 27-169 29-183 (185)
17 COG4080 SpoU rRNA Methylase fa 98.1 3E-05 7.7E-10 52.8 9.1 141 15-171 3-146 (147)
18 pfam04407 DUF531 Protein of un 96.6 0.036 9.2E-07 33.4 9.6 146 15-169 2-168 (174)
19 COG4752 Uncharacterized protei 96.0 0.0021 5.3E-08 41.2 0.7 135 27-170 30-185 (190)
20 pfam09895 DUF2122 RecB-family 94.7 0.097 2.5E-06 30.7 5.7 97 55-168 9-105 (105)
21 PRK00779 ornithine carbamoyltr 90.7 1.3 3.3E-05 23.6 7.7 74 10-88 149-223 (308)
22 PRK07200 aspartate/ornithine c 88.8 1.8 4.7E-05 22.7 7.1 69 22-91 200-270 (395)
23 COG1772 Uncharacterized protei 84.4 3.2 8.1E-05 21.2 7.7 141 15-164 2-163 (178)
24 pfam04452 Methyltrans_RNA RNA 83.6 3.4 8.8E-05 21.0 8.2 142 16-166 63-221 (225)
25 TIGR03316 ygeW probable carbam 81.0 4.3 0.00011 20.4 7.1 59 29-88 191-250 (357)
26 PRK02102 ornithine carbamoyltr 80.7 4.4 0.00011 20.3 7.3 77 10-88 151-229 (331)
27 pfam00185 OTCace Aspartate/orn 80.3 4.6 0.00012 20.2 7.5 77 14-91 2-81 (155)
28 COG0078 ArgF Ornithine carbamo 79.8 4.7 0.00012 20.1 7.6 76 12-90 151-228 (310)
29 PRK11713 16S rRNA m3U1498 meth 76.2 6 0.00015 19.5 11.1 144 16-169 78-236 (243)
30 PRK03515 ornithine carbamoyltr 76.0 6.1 0.00015 19.4 7.1 76 12-89 154-231 (334)
31 PRK04284 ornithine carbamoyltr 75.1 6.4 0.00016 19.3 7.5 79 9-89 150-230 (332)
32 COG1385 Uncharacterized protei 73.6 7 0.00018 19.0 8.3 141 18-168 82-240 (246)
33 PRK08192 aspartate carbamoyltr 69.2 8.7 0.00022 18.4 7.5 75 12-90 157-233 (338)
34 PRK01713 ornithine carbamoyltr 65.7 10 0.00026 18.0 7.5 26 30-56 172-197 (334)
35 cd05291 HicDH_like L-2-hydroxy 63.1 11 0.00029 17.7 7.2 72 25-96 8-81 (306)
36 PRK11815 tRNA-dihydrouridine s 62.5 12 0.0003 17.6 12.6 188 10-205 61-277 (333)
37 PRK12562 ornithine carbamoyltr 60.0 13 0.00033 17.3 7.3 75 13-89 155-231 (334)
38 TIGR00046 TIGR00046 conserved 59.8 6.3 0.00016 19.3 2.0 131 16-150 82-233 (258)
39 pfam02598 DUF171 Uncharacteriz 57.0 9.8 0.00025 18.1 2.6 32 18-49 10-45 (283)
40 COG3426 Butyrate kinase [Energ 56.2 10 0.00027 17.9 2.6 30 20-50 101-132 (358)
41 PRK02255 putrescine carbamoylt 53.6 17 0.00042 16.7 7.0 75 12-89 153-229 (341)
42 PRK04523 N-acetylornithine car 52.8 17 0.00044 16.6 5.8 11 28-38 95-105 (335)
43 pfam07047 OPA3 Optic atrophy 3 51.2 18 0.00045 16.5 3.2 24 153-176 81-104 (134)
44 PRK00856 pyrB aspartate carbam 51.1 18 0.00046 16.4 6.9 10 32-41 63-72 (304)
45 TIGR00658 orni_carb_tr ornithi 50.6 18 0.00047 16.4 5.1 71 18-89 166-239 (341)
46 COG2106 Uncharacterized conser 50.2 14 0.00036 17.1 2.6 24 25-48 25-48 (272)
47 TIGR01610 phage_O_Nterm phage 50.1 15 0.00038 17.0 2.6 41 217-257 9-49 (104)
48 TIGR01855 IMP_synth_hisH imida 49.5 17 0.00043 16.6 2.8 25 24-48 7-35 (211)
49 TIGR01329 cysta_beta_ly_E cyst 47.8 20 0.00052 16.1 3.1 24 117-140 229-252 (415)
50 TIGR02707 butyr_kinase butyrat 46.3 19 0.00049 16.3 2.7 29 22-51 100-131 (353)
51 COG4075 Uncharacterized conser 45.2 19 0.0005 16.2 2.6 34 18-54 9-42 (110)
52 pfam00427 PBS_linker_poly Phyc 44.2 23 0.00059 15.7 4.2 43 202-244 58-100 (131)
53 pfam00056 Ldh_1_N lactate/mala 43.0 24 0.00062 15.6 5.6 70 26-95 10-81 (142)
54 KOG0848 consensus 41.8 8.2 0.00021 18.6 0.3 36 228-267 235-270 (317)
55 KOG0062 consensus 39.0 28 0.00071 15.3 4.0 18 17-34 220-237 (582)
56 PTZ00082 L-lactate dehydrogena 38.9 28 0.00071 15.2 7.2 77 16-95 9-87 (322)
57 cd00650 LDH_MDH_like NAD-depen 37.9 29 0.00074 15.1 5.9 71 25-95 7-82 (263)
58 pfam01488 Shikimate_DH Shikima 37.8 29 0.00074 15.1 4.8 78 11-95 9-87 (134)
59 PRK03958 tRNA 2'-O-methylase; 36.8 30 0.00077 15.0 8.3 51 116-172 100-150 (175)
60 PTZ00117 malate dehydrogenase; 36.5 31 0.00078 15.0 6.4 76 17-95 4-81 (313)
61 PRK08638 threonine dehydratase 33.8 34 0.00086 14.7 5.3 55 23-82 81-136 (329)
62 cd05290 LDH_3 A subgroup of L- 33.3 34 0.00088 14.7 5.8 71 24-94 6-79 (307)
63 PRK02224 chromosome segregatio 32.7 35 0.00089 14.6 4.3 12 16-27 25-36 (880)
64 KOG0626 consensus 32.5 35 0.0009 14.6 2.9 83 155-243 243-335 (524)
65 TIGR02730 carot_isom carotene 31.3 19 0.00048 16.3 0.7 12 218-229 435-446 (506)
66 cd01339 LDH-like_MDH L-lactate 31.3 37 0.00095 14.5 6.1 70 25-94 6-77 (300)
67 PRK07502 cyclohexadienyl dehyd 30.7 38 0.00097 14.4 12.8 160 24-202 13-195 (307)
68 TIGR01135 glmS glucosamine--fr 30.4 38 0.00098 14.4 6.6 67 111-180 550-619 (628)
69 TIGR03420 DnaA_homol_Hda DnaA 30.2 39 0.00099 14.3 6.4 26 233-258 192-217 (226)
70 PRK10415 tRNA-dihydrouridine s 30.0 39 0.00099 14.3 14.2 215 10-238 61-298 (321)
71 PRK13172 consensus 30.0 39 0.00099 14.3 2.7 22 24-45 10-31 (213)
72 pfam09353 DUF1995 Domain of un 29.9 39 0.001 14.3 4.3 34 16-50 98-131 (205)
73 TIGR01950 SoxR redox-sensitive 29.9 39 0.001 14.3 2.9 47 153-205 48-94 (142)
74 PRK13173 consensus 29.9 39 0.001 14.3 2.6 22 24-45 10-31 (211)
75 pfam07611 DUF1574 Protein of u 29.5 19 0.00049 16.3 0.5 51 113-171 57-108 (345)
76 TIGR02401 trehalose_TreY malto 29.3 19 0.00048 16.3 0.5 31 116-151 152-182 (971)
77 CHL00188 hisH imidazole glycer 27.9 42 0.0011 14.1 2.6 24 24-47 10-33 (210)
78 cd03239 ABC_SMC_head The struc 27.9 42 0.0011 14.1 4.1 37 189-226 131-168 (178)
79 TIGR02668 moaA_archaeal probab 27.8 43 0.0011 14.1 2.3 25 23-47 46-70 (324)
80 PRK13152 hisH imidazole glycer 27.6 43 0.0011 14.1 2.7 22 24-45 8-29 (201)
81 pfam04013 DUF358 Protein of un 27.1 44 0.0011 14.0 2.6 51 119-170 146-196 (199)
82 PRK13153 consensus 25.4 47 0.0012 13.8 2.7 22 24-45 8-29 (203)
83 PRK13177 consensus 25.2 47 0.0012 13.8 2.9 24 24-47 11-34 (207)
84 PRK10786 ribD bifunctional dia 25.2 5.3 0.00014 19.8 -3.0 37 17-56 70-106 (367)
85 PRK13174 consensus 24.8 48 0.0012 13.7 3.1 24 24-47 10-33 (212)
86 PRK13170 hisH imidazole glycer 24.6 49 0.0012 13.7 2.9 23 23-45 8-30 (196)
87 PRK12493 magnesium chelatase; 23.9 50 0.0013 13.6 2.4 35 7-41 434-481 (1318)
88 cd05293 LDH_1 A subgroup of L- 23.1 52 0.0013 13.5 7.1 79 14-95 3-83 (312)
89 PRK13180 consensus 23.1 52 0.0013 13.5 2.7 22 24-45 10-31 (209)
90 TIGR02814 pfaD_fam PfaD family 22.8 53 0.0013 13.5 2.8 170 34-252 215-392 (449)
91 PRK13142 hisH imidazole glycer 22.7 53 0.0014 13.5 2.6 24 24-47 8-31 (192)
92 PRK13179 consensus 21.8 55 0.0014 13.4 2.6 22 24-45 8-29 (207)
93 PRK06436 glycerate dehydrogena 20.9 58 0.0015 13.3 4.6 53 24-92 129-182 (303)
94 COG1519 KdtA 3-deoxy-D-manno-o 20.4 59 0.0015 13.2 3.7 20 22-41 267-286 (419)
95 KOG4609 consensus 20.4 57 0.0015 13.3 1.5 21 215-235 196-216 (284)
96 pfam01765 RRF Ribosome recycli 20.1 60 0.0015 13.2 4.1 62 185-247 85-146 (165)
No 1
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=443.91 Aligned_cols=236 Identities=39% Similarity=0.608 Sum_probs=221.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
.+|.||||+|++|||||++||+|+|||+++|+||+|++. ++++|+++|+||.++++++++++++++|+.||+++++||+
T Consensus 3 ~~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTta 81 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIVDTLEEALADCDLVVATTA 81 (242)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHCCCEEECCHHHHHCCCCEEEEECC
T ss_conf 761799975888752799999998679664899789889-8899999864666665067664679999607887998056
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001232220476787341016889999999999962
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268)
+.+...+....|.+.......... ++++|||||+|+.||+|||+++||++++||++|+||||||||||+|+||||++..
T Consensus 82 r~r~~~~~~~~P~e~~~~l~~~~~-~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p~Y~sLNLa~AV~ii~YEl~~~~ 160 (242)
T COG0565 82 RSRDLLRPLRTPREAAPELLEKAK-GGKVALVFGRERVGLTNEELALCDVLVTIPANPDYPSLNLAQAVQVILYELRKAE 160 (242)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 667665565687878999998714-8976999788668978899985027873679986543659999999999999864
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 13665444333334688889999999999998728998754389999999998631699989999999999999984103
Q gi|254780904|r 173 IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 (268)
Q Consensus 173 ~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~~ 252 (268)
...... .....++|++++++.|++|+++.|+.+||+.++++ ++++.+|||+|+|+.++++|+++||||+++++|..+.
T Consensus 161 l~~~~~-~~~~~~~at~~ele~l~~hle~~L~~~~~~~~~~~-~~~~~~lRrl~~Ra~~~~~Ev~~Lrgil~~i~~~~~~ 238 (242)
T COG0565 161 LAQEGS-SGIEDELATKEELELLYEHLEELLDAIGFPDPRKK-KSLMRKLRRLLGRARLTSREVNILRGILRKIERRIKG 238 (242)
T ss_pred CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 545665-43346789999999999999999997499752005-5899999999865358689999999999999998500
No 2
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=100.00 E-value=0 Score=436.57 Aligned_cols=237 Identities=34% Similarity=0.492 Sum_probs=215.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH--CCCCCEEE
Q ss_conf 8968999428885479999999997199804980888899999999985310134442001377899841--25531012
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--DLHFIYAT 90 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~--~~~~~~~~ 90 (268)
.++.||||+|++|||||||||+|+||||++|+||+|+++.++++|+.+|+||.++++++++|+++++++. |++++++|
T Consensus 3 ~~I~ivLVep~~~gNvG~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~~~vgT 82 (253)
T TIGR00050 3 ENISIVLVEPKHSGNVGSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCDLVVGT 82 (253)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCEEEEC
T ss_conf 12478886179986446999998762700125646622556878999872027865875474267999873199707862
Q ss_pred E-CC---CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0-11---2234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 91 T-AR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 91 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
| .| .+...+...+|.+..........+. ++|||||||+.||+||||..||++|+|||+++||||||||||+|++|
T Consensus 83 sGaRGGd~r~l~~~~~~P~el~~~~~~~~g~~-~~A~vFGREd~GL~NEEL~~Ch~~v~iP~~~~YPslNL~~AV~Vi~Y 161 (253)
T TIGR00050 83 SGARGGDSRNLQRPLLTPRELADKILAKKGWM-KVAIVFGREDSGLTNEELEKCHVLVSIPTSEEYPSLNLSHAVAVILY 161 (253)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 67888754344677778366687642420672-14788524688876688964781552257788741148999999999
Q ss_pred HHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Q ss_conf 999962136654-------44333334688889999999999998728998754389999999998631699-9899999
Q gi|254780904|r 167 ECMENSIVSSEK-------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL-MREEVFL 238 (268)
Q Consensus 167 El~r~~~~~~~~-------~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l-~~~E~~~ 238 (268)
|+|+........ ......+.|+..+++.|++++.+.|..++++.+ |++...+..||||++|+.+ +++|+++
T Consensus 162 eL~~~~~~~~~~nqvPg~~~~~~~~~~A~~~~l~~~~~~~~~~L~~~~~i~e-h~~~~~~~~frrl~~RA~~~~~~e~~~ 240 (253)
T TIGR00050 162 ELRMAKLVQEENNQVPGDRLEDSEMEEATKDDLELLLEHLEEILLSLEVIPE-HKKRLVMRKFRRLYQRAGLLEKEEVAL 240 (253)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998898741146788742001003576888999999999999998433688-863044587777667530104889999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998410
Q gi|254780904|r 239 LRGIVSTLDKFSR 251 (268)
Q Consensus 239 L~Gil~~l~~~~~ 251 (268)
|+||+++++|..+
T Consensus 241 L~g~L~~i~~~~~ 253 (253)
T TIGR00050 241 LRGILRKIEKRIK 253 (253)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999987409
No 3
>PRK10433 putative RNA methyltransferase; Provisional
Probab=100.00 E-value=0 Score=415.83 Aligned_cols=227 Identities=29% Similarity=0.410 Sum_probs=202.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf 96899942888547999999999719980498088889999999998531013444200137789984125531012011
Q gi|254780904|r 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268)
.+.||||+|++||||||+||+|+||||++|+||+|+++ +++++.++|+|+.++++++.+++++++|+++|+++++||+|
T Consensus 2 ~i~iVLvep~~p~NIGa~ARaMkN~G~~~L~LV~P~~~-~~~~a~~~A~gA~diL~~a~v~~sL~eAl~d~~~vvgtTaR 80 (228)
T PRK10433 2 RLTIILVAPARAENIGAAARAMKTMGFSELRIVDSQAH-LEPAARWVAHGSGDILDNIEVFDTLAEALHDVDFTVATTAR 80 (228)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCC-CCHHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCEEEEECCC
T ss_conf 69999967999751999999997289981699799999-98889998347399997373337799998548989996456
Q ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 22343034124203566655311588169999458884243100012322204767873410168899999999999621
Q gi|254780904|r 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 (268)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~ 173 (268)
.+...+....+.+............+++|||||+|++||||+|+++||++++||+++.|+||||||||+|+||||+....
T Consensus 81 ~r~~~~~~~~p~~~~~~~~~~~~~~~~valvFG~E~~GLsneEl~~C~~~~~IPt~~~y~SLNLaqAV~i~~YEl~~~~~ 160 (228)
T PRK10433 81 SRAKYHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160 (228)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 46688886899999999997323478479998886689898999867978985589998532199999999999987555
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3665444333334688889999999999998728998754389999999998631699989999999999999984103
Q gi|254780904|r 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 (268)
Q Consensus 174 ~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~~ 252 (268)
.. .....+++..+++.|++|+++.|..+||+.|+...+++++++++ ++++|+++||||+++++|++.+
T Consensus 161 ~~-----~~~~~~a~~~~~e~l~~hl~~~L~~igf~~~~~~~~~l~~rl~r------L~~rEv~iLrGil~~iek~l~k 228 (228)
T PRK10433 161 QP-----AKSDTTADEHQLQALRQRVMELLTTLGVADDEKLVDWLQQRLGL------LEQRDTAMLHRLLHDIEKKLTK 228 (228)
T ss_pred CC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 78-----77888899999999999999999985999864678999999876------7088999999999999987349
No 4
>PRK10358 putative tRNA/rRNA methyltransferase YibK; Provisional
Probab=100.00 E-value=1.7e-34 Score=236.82 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=117.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCC--CEEEEC
Q ss_conf 689994288854799999999971998049808888999999999853101344420013778998412553--101201
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF--IYATTA 92 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~--~~~~~~ 92 (268)
+.|||++|++|+|+|+|+|+|+|||+ +|+||+|.++.++++..++|...+........+.+++++...... .+.++.
T Consensus 2 ~~IVL~~P~iP~N~G~i~R~ca~~g~-~L~LV~P~gf~~~dk~lrRAgldy~~~~~~~~~~~~~~f~~~~~~~r~~~~tt 80 (157)
T PRK10358 2 LNIVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYAAFLEAENPQRLFALTT 80 (157)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCHHHHHHCCCCHHEEEEEECCCHHHHHHHCCCCEEEEEEC
T ss_conf 17999589888828999999996399-89998068878742666533163021268998089999997438972899725
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC--CCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001--2322204767873410168899999999999
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~--cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268)
. ....+....+....+||||+|++||++++++. ||..++|||.+.++|||||+||+|++||.+|
T Consensus 81 ~--------------~~~~~~~~~~~~~d~llFG~Es~GLp~e~l~~~~~~~~i~IPm~~~~rSLNLs~AvaIvlYEa~R 146 (157)
T PRK10358 81 K--------------GTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWR 146 (157)
T ss_pred C--------------CCCCCHHCCCCCCCEEEECCCCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7--------------78761002357898899777678989999951777749983089798514299999999999998
Q ss_pred HHCCCC
Q ss_conf 621366
Q gi|254780904|r 171 NSIVSS 176 (268)
Q Consensus 171 ~~~~~~ 176 (268)
|.+...
T Consensus 147 Q~~f~g 152 (157)
T PRK10358 147 QLGYPG 152 (157)
T ss_pred HCCCCC
T ss_conf 369986
No 5
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-33 Score=226.19 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=126.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 48968999428885479999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
....++||++.+||+|+|||+|+|++||++.+++..++++++++++++.|+|+.+.++.+.+.++..++.....
T Consensus 107 ~~~~~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~------ 180 (260)
T COG0566 107 AQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLK------ 180 (260)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHEEECCCCCCCCCEEEEECCHHHHHHHHH------
T ss_conf 58869999178788712488875987389889988986677453432541771005735888077999999999------
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
..+++.+.+.... ...+......++++||||+|+.|||.+.++.||.+++|||.+.++|||+|+|++|+|||++|+
T Consensus 181 ---~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~~rq 256 (260)
T COG0566 181 ---EAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEARRQ 256 (260)
T ss_pred ---HCCCEEEEECCCC-CCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---7694899985888-743110267787799987898885899995178479935899865108999999999999986
Q ss_pred HC
Q ss_conf 21
Q gi|254780904|r 172 SI 173 (268)
Q Consensus 172 ~~ 173 (268)
..
T Consensus 257 ~~ 258 (260)
T COG0566 257 RR 258 (260)
T ss_pred HC
T ss_conf 44
No 6
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=99.98 E-value=3.4e-32 Score=222.36 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=121.0
Q ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 13489-68999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~-~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
...+. .+++||+.+||+|+|||+|+|.+||++.+++...++++.++.+.+.|+|+.+.++...+.+ +..++.....
T Consensus 90 ~~~~~~lil~LD~I~DP~NlGaIiRsA~afGv~~vil~~~~~~~~~~~v~k~S~Ga~~~~pi~~~~n-l~~~l~~lk~-- 166 (244)
T PRK11181 90 ASTEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLTATAKKVACGAAETVPLIRVTN-LARTMRMLQE-- 166 (244)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCHHHCCCEEEECC-HHHHHHHHHH--
T ss_conf 3578987999818878738999999999819989997899778542588887414232188169589-9999999886--
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268)
.+++.+... .............++++||||+|++||+.+.++.||.+++|||.+.++|||+|+|++|+|||+
T Consensus 167 -------~g~~i~g~~-~~~~~~~~~~~~~~~~alvlGsE~~Gl~~~~~~~~d~~v~Ip~~g~~~SLNVsvAa~I~lyE~ 238 (244)
T PRK11181 167 -------KNVWIVGTA-GEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEA 238 (244)
T ss_pred -------CCEEEEEEC-CCCCCCCCHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf -------596999524-666766410105787699987776665899997599899807999985587999999999999
Q ss_pred HHHHC
Q ss_conf 99621
Q gi|254780904|r 169 MENSI 173 (268)
Q Consensus 169 ~r~~~ 173 (268)
+||+.
T Consensus 239 ~RQR~ 243 (244)
T PRK11181 239 VRQRL 243 (244)
T ss_pred HHCCC
T ss_conf 86505
No 7
>PRK10864 putative methyltransferase; Provisional
Probab=99.98 E-value=7.2e-32 Score=220.34 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=117.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEE
Q ss_conf 34896899942888547999999999719980498088889999999998531013444200137789984125531012
Q gi|254780904|r 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT 90 (268)
Q Consensus 11 ~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (268)
....++++||+++||+|+|||+|+|.+||++.++|.+. ...+++.+++.|+|+.+.+..+.+ .++..++..+..
T Consensus 197 ~~~~~lL~LDgV~DP~NlGAIiRSAaafGv~gVIl~~~-~~~~s~~avr~SaGa~e~vpv~~v-~nl~~aL~~Lk~---- 270 (348)
T PRK10864 197 GAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITG-DSIVDVLDDFRQ---- 270 (348)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCC-CCCCCHHHHHHHCCHHCCCCEEEE-CCHHHHHHHHHH----
T ss_conf 99985999789779715889999999858988997999-877437889663322200635997-789999999998----
Q ss_pred ECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01122343034124203566655311588169999458884243100012322204767873410168899999999999
Q gi|254780904|r 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268)
..++.+.+... ....+....+.++++||||+|+.||+...++.||++++|||.+.++|||+|+|++|+||||+|
T Consensus 271 -----aG~~Ivg~s~~-~~~~l~~~~l~~~~vLVlGsEg~GLs~~v~~~cD~~V~IPm~g~veSLNVSVAagIlLyE~~R 344 (348)
T PRK10864 271 -----AGYTIVTTSSH-KGKPLFKAELPAKMVLVLGQEYDGLSDAARSPGDLSVKIDGTGNVESLNVSVATGVLLAEWWR 344 (348)
T ss_pred -----CCCEEEEECCC-CCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----89689985477-886475636789889998998855069999758889982799998578899999999999987
Q ss_pred HHC
Q ss_conf 621
Q gi|254780904|r 171 NSI 173 (268)
Q Consensus 171 ~~~ 173 (268)
|..
T Consensus 345 Q~~ 347 (348)
T PRK10864 345 QNK 347 (348)
T ss_pred HHC
T ss_conf 316
No 8
>pfam00588 SpoU_methylase SpoU rRNA Methylase family. This family of proteins probably use S-AdoMet.
Probab=99.97 E-value=3.8e-32 Score=222.05 Aligned_cols=137 Identities=30% Similarity=0.387 Sum_probs=115.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCC----E
Q ss_conf 96899942888547999999999719980498088889-999999998531013444200137789984125531----0
Q gi|254780904|r 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI----Y 88 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~-~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~----~ 88 (268)
.++|||++|++|+|+|+|+|+|++||+++++|++|++. ++++++.+.|+|+.+.++. ..+.+++++++.+... +
T Consensus 1 p~~vvL~~i~~p~NlG~i~Rta~~fG~~~v~l~~~~~~~~~~~~~~r~s~ga~~~i~~-~~~~~~~~~~~~~~~~~~~i~ 79 (142)
T pfam00588 1 PLIVVLDEPQDPGNLGAIARTAAAFGADGLILVEPRCADLYNPKAIRASAGALFHLPL-VIVDNLEEALKDLKEAGYWII 79 (142)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-EEECCHHHHHHHHHHCCCEEE
T ss_conf 9899995798877699999999983999643557876797778999997677523783-284339999999887495011
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
+++.. ........+.++++||||+|++||++++++.||..++|||.+.++|||||+|++|+||
T Consensus 80 ~~~~~---------------~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~ly 142 (142)
T pfam00588 80 ATSLK---------------GKPLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGEVESLNVAVAAAIILY 142 (142)
T ss_pred CCCCC---------------CCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 13446---------------7487781468872899778778989999986997999749889963549999999969
No 9
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=99.97 E-value=5.4e-31 Score=214.80 Aligned_cols=164 Identities=19% Similarity=0.269 Sum_probs=125.7
Q ss_pred CCC-----CHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCC
Q ss_conf 975-----225532134896899942888547999999999719980498088889999999998531013444200137
Q gi|254780904|r 1 MTP-----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 (268)
Q Consensus 1 ~t~-----~~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~ 75 (268)
||| ....|...+...+|||+++++|||+|||+|+|++||+..+++|.|.... ......|+|+...+... .+.
T Consensus 1 m~peR~~ri~~vL~~Rq~dL~vvLD~V~dP~NlGAIiRTadA~Gv~~V~~v~~~~~~--~~~~~ta~Gs~~wv~v~-~~~ 77 (229)
T PRK11081 1 MNPERYARICEMLARRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRM--RTMGSTAAGSNSWVQVK-THR 77 (229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHCEEEEE-EEC
T ss_conf 987899999999980589869997688998509999999998389746896787520--11114430344004557-847
Q ss_pred CHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCH
Q ss_conf 78998412553101201122343034124203566655311588169999458884243100012322204767873410
Q gi|254780904|r 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155 (268)
Q Consensus 76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SL 155 (268)
++.+++... +..+.+.+..........+...++..++|||||+|..|||.+.++.||..++|||.+..+||
T Consensus 78 ~i~~~i~~L---------k~~G~~I~at~l~~~avd~~~~d~t~ptalVlGnE~~GiS~~~~~~aD~~I~IPM~G~veSL 148 (229)
T PRK11081 78 TIGDAVAHL---------KAQGMQILATHLSDKAVDFREIDYTRPTAILMGQEKTGISQEALALADQDIIIPMIGMVQSL 148 (229)
T ss_pred CHHHHHHHH---------HHCCCEEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCC
T ss_conf 899999999---------97499899993688864076704568769998587777599999828957996899998862
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 168899999999999621366
Q gi|254780904|r 156 NISQAVLLMVWECMENSIVSS 176 (268)
Q Consensus 156 NLS~AvaIvlYEl~r~~~~~~ 176 (268)
|||+|++|+|||..||...+.
T Consensus 149 NVSVAaaIiLyEa~RQR~~ag 169 (229)
T PRK11081 149 NVSVASALILYEAQRQRQNAG 169 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHCC
T ss_conf 599999999999999898768
No 10
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.6e-26 Score=183.79 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=121.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC---CCEEE
Q ss_conf 968999428885479999999997199804980888899999999985310134442001377899841255---31012
Q gi|254780904|r 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH---FIYAT 90 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~---~~~~~ 90 (268)
...|||++|+.|.|.|.|+|+|+++|+ .|+||+|..+..+++..+.|.-.++.......++++++++.... ..++.
T Consensus 2 ~~~IvL~~PeIP~NTGNI~R~ca~tga-~LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~ 80 (155)
T COG0219 2 MLNIVLYQPEIPPNTGNIIRTCAATGA-ELHLIEPLGFDLDDKRLKRAGLDYHEKASLTEHDSLEAFLEAEPIGGRLFAL 80 (155)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHCCCCHHHHCCEEEECCHHHHHHHCCCCCEEEEE
T ss_conf 607999789889845499999885297-6789746777654466453234517546628968899998635677539999
Q ss_pred ECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE-EECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 01122343034124203566655311588169999458884243100012322-20476787341016889999999999
Q gi|254780904|r 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~-v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
+...... +....+.....++||+|++||+.+.++..+.. +.|||.+...|||||.+|+|++||.+
T Consensus 81 tt~~~~~--------------~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNLsnsvavv~yEa~ 146 (155)
T COG0219 81 TTKGTTT--------------YTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNLSNTVAVVLYEAL 146 (155)
T ss_pred EECCCCC--------------CCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9436666--------------66456788878997888889999999739335598336878763108887999999999
Q ss_pred HHHCCC
Q ss_conf 962136
Q gi|254780904|r 170 ENSIVS 175 (268)
Q Consensus 170 r~~~~~ 175 (268)
||....
T Consensus 147 RQ~~~~ 152 (155)
T COG0219 147 RQLGFA 152 (155)
T ss_pred HHHCCC
T ss_conf 972776
No 11
>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.93 E-value=2.7e-26 Score=185.20 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=122.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCC
Q ss_conf 68999428885479999999997199804980888899999999985310134442001377899841255310120112
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (268)
+-|||++|+.|.|.|-|+|+|+|||+ .|+||.|..|..++|-.++|.-..+-......+.++++++....-.-+
T Consensus 2 ~~iVLy~PeIP~NTGNI~R~Caat~~-~LHLi~PlGF~~~DK~L~RAGLdyw~fv~~~~H~s~E~fle~~~~~~~----- 75 (161)
T TIGR00185 2 LNIVLYEPEIPPNTGNIVRTCAATGT-RLHLIKPLGFELDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQKG----- 75 (161)
T ss_pred EEEEEECCCCCCCCCHHHHHHHCCCC-EEEEECCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHCCCCCE-----
T ss_conf 15774078897884112010111586-245660578620781423147874452323562556888863389971-----
Q ss_pred CCCCEEEECCC-CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC--CCEEECCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 23430341242-03566655311588169999458884243100012--3222047678-73410168899999999999
Q gi|254780904|r 95 RNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNP-LFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~c--d~~v~IPt~~-~~~SLNLS~AvaIvlYEl~r 170 (268)
..+.....- .......-........-||||+|.+||+...++.. +..++|||.. .+.|||||.||+|++||.+|
T Consensus 76 --nlf~lT~~G~~t~~~~~~~~~~~d~~yl~fG~ET~GLP~~~~~~~P~~~~~RiPm~~s~vRSlNLsn~va~~lYEa~r 153 (161)
T TIGR00185 76 --NLFLLTKKGDKTPDHISVTYQDGDELYLVFGQETKGLPKSLLDNLPMEQKIRIPMTNSEVRSLNLSNSVAIVLYEALR 153 (161)
T ss_pred --EEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --688884038877450466543786169983687755128998606321630325578884622468899999998787
Q ss_pred HHCCCC
Q ss_conf 621366
Q gi|254780904|r 171 NSIVSS 176 (268)
Q Consensus 171 ~~~~~~ 176 (268)
|..+..
T Consensus 154 Q~~Y~~ 159 (161)
T TIGR00185 154 QLGYLG 159 (161)
T ss_pred HCCCCC
T ss_conf 513578
No 12
>KOG2506 consensus
Probab=99.88 E-value=1.1e-22 Score=162.57 Aligned_cols=149 Identities=19% Similarity=0.119 Sum_probs=117.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH--------HH
Q ss_conf 1348968999428885479999999997199804980888899999999985310134442001377899--------84
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--------AI 81 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~--------a~ 81 (268)
+..-+.++|+|+++||||+|+|+|+|++||++++.|..-+||+++++|.+.++|+.+.+....- +|+. +-
T Consensus 213 s~~lp~~lvcdnirdpgnlgti~rsaaa~~cs~v~lt~gccdpwe~kalrag~ga~fr~pi~~~--~w~~l~l~~pp~~a 290 (371)
T KOG2506 213 SPSLPRVLVCDNIRDPGNLGTIVRSAAAFNCSGVFLTPGCCDPWEDKALRAGRGASFRLPIVSG--NWNHLKLLEPPFQA 290 (371)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCEECCEECC--CHHHHHCCCCHHHH
T ss_conf 8888747885367788506789998750787613665776785424666435775066244568--65441213886677
Q ss_pred HCCCCCEEEEC-CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf 12553101201-12234303412420356665531158816999945888424310001232220476787341016889
Q gi|254780904|r 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268)
.+|....+++. |.+...+. .........+.++|.|.|++|+|.|....|... .||+.+.++|||+|+|
T Consensus 291 d~c~~~~a~t~qr~~~~~k~----------~e~ad~~~ap~~liigge~~gvseea~~~~~lv-gip~a~g~dslnva~a 359 (371)
T KOG2506 291 DLCAGHPATTTQRLKPVSKL----------VEFADSLAAPLCLIIGGEGNGVSEEARKVCVLV-GIPMAGGFDSLNVAVA 359 (371)
T ss_pred HHHCCCHHHHHHHHCCCHHH----------HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC-CCCCCCCCCHHHHHHH
T ss_conf 65047647666552320356----------677764367617997467677479999899972-8764477213456777
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999996
Q gi|254780904|r 161 VLLMVWECMEN 171 (268)
Q Consensus 161 vaIvlYEl~r~ 171 (268)
.+|.|||+.|+
T Consensus 360 ~~illfel~r~ 370 (371)
T KOG2506 360 GGILLFELQRL 370 (371)
T ss_pred HHHHHHHHHHC
T ss_conf 77999877513
No 13
>KOG0838 consensus
Probab=99.72 E-value=7.1e-17 Score=125.96 Aligned_cols=149 Identities=21% Similarity=0.183 Sum_probs=112.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHC--CCC-CEEEE
Q ss_conf 689994288854799999999971998049808888999999999853101344420013778998412--553-10120
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD--LHF-IYATT 91 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~--~~~-~~~~~ 91 (268)
..|+|++..||+|+|+|+|++..||.+.+.+|.-.+...++.+.+.++|+.++++.-.+-.-.+-...- ..+ +.+|.
T Consensus 112 l~vylde~tDp~n~gaI~rsA~~lg~~~v~lv~~n~s~lS~~vskss~gale~l~I~q~~~~~efl~vsvaaG~~l~~t~ 191 (271)
T KOG0838 112 LCVYLDEVTDPQNIGAIIRSAYFLGADGVLLVKGNSSPLSPVVSKSSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHGTC 191 (271)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCHHHEEEHHHCCCHHHHHHHHHHCCEEEEEEE
T ss_conf 77640575687506778776887467715897336887864677765021416638773888999899986755899961
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCC----CCCC--CCHHHHHHHHHHH
Q ss_conf 112234303412420356665531158816999945888424310001232220476----7873--4101688999999
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV----NPLF--PSLNISQAVLLMV 165 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt----~~~~--~SLNLS~AvaIvl 165 (268)
...... + ..............++++|.|+|+.|++...++.||..++||. ..++ .|||+|.|+++++
T Consensus 192 ~~~~~~-~------~~~~~~l~~~~~~~Pv~lv~Gneg~Gi~~~vl~~~d~~~si~~n~~~~d~~~v~SlNvSvaa~ll~ 264 (271)
T KOG0838 192 SWAPAS-K------TISAVSLKFIDPEEPVALVLGNEGAGIRPGVLELCDLRVSIPGNGFEKDNGAVDSLNVSVAAGLLL 264 (271)
T ss_pred CCCCCC-C------CCCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHH
T ss_conf 476776-6------403024430177897489854655544711342456267537876246776312111047888988
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780904|r 166 WECME 170 (268)
Q Consensus 166 YEl~r 170 (268)
|++..
T Consensus 265 ~~~~~ 269 (271)
T KOG0838 265 YHFLN 269 (271)
T ss_pred HHHHH
T ss_conf 88850
No 14
>TIGR00186 rRNA_methyl_3 RNA methyltransferase, TrmH family, group 3; InterPro: IPR004441 The RNA methyltransferase, TrmH family, group 3 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.60 E-value=3.8e-15 Score=115.07 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=118.2
Q ss_pred CCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 134-8968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~-~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
+.. ....++|++.++|+|+|++.|++..+|...+++...++...+..+.+.+.|+...+....+...............
T Consensus 106 ~~~~~~~~~~~~~~~dp~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (271)
T TIGR00186 106 SKKKNPFLLLLDEITDPHNLGAILRTAEALGADGVVLPKRRSAPLTSTVLKTSAGALEYLPLARVTNLSRTLTKLKELGF 185 (271)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 02445147886133472023467665544121102420101001001344433102343002332225889998876275
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCC-----------CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHH
Q ss_conf 1201122343034124203566655311588-----------16999945888424310001232220476787341016
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNL 157 (268)
.+.......... .......... +.++++|+|+.|++....+.||.++.||+.+.++|||+
T Consensus 186 w~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~c~~~~~~~~~g~~~~g~~~~~~~~~d~~~~~p~~~~~~~l~~ 256 (271)
T TIGR00186 186 WTLGTDLDGEDT---------PELYEKLLLKLHDLNGLCNELPLALVLGNEGEGLSRLLKKNCDFLIKIPLAGKVDSLNV 256 (271)
T ss_pred EEEEECCCCHHH---------HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCHHH
T ss_conf 478613442012---------45666554333322212311132457637653213455530661676035666320024
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88999999999996
Q gi|254780904|r 158 SQAVLLMVWECMEN 171 (268)
Q Consensus 158 S~AvaIvlYEl~r~ 171 (268)
+.|+++++|++.++
T Consensus 257 ~~~~g~~~~~~~~~ 270 (271)
T TIGR00186 257 SVAAGILLFEIKRQ 270 (271)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 66778787766523
No 15
>KOG0839 consensus
Probab=99.26 E-value=4.3e-12 Score=95.84 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=112.6
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCC-CCHHHHHHCC
Q ss_conf 553213489689994288854799999999971998049808888999999999853101344420013-7789984125
Q gi|254780904|r 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-SNLKEAIADL 84 (268)
Q Consensus 6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~-~~~~~a~~~~ 84 (268)
+.|.......+||--=.--|-|+|-++|+|.-||++-|.+-+-++. -++.-...|+.|....+...+- +.+...+..
T Consensus 1318 ~rL~~grssLIVVASLVDKppNLgGicRTcEVFgvs~LvVad~~vi-~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~- 1395 (1477)
T KOG0839 1318 ARLGVGRSSLIVVASLVDKPPNLGGICRTCEVFGVSLLVVADIKVI-NDKQFKNLSVTAERWMPIEEVKLDELASFLQE- 1395 (1477)
T ss_pred HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEEE-CCHHHHHEEEEHHHCCCHHCCCHHHHHHHHHH-
T ss_conf 8743686159998520158986301445666617533787423452-25204222433875620222683778999998-
Q ss_pred CCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 53101201122343034124203566655311588169999458884243100012322204767873410168899999
Q gi|254780904|r 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 (268)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIv 164 (268)
.++.++..+..-........+++.+.++..||+|+|..|++-..+..-|.++.||+.|...||||-++.|++
T Consensus 1396 --------kK~EGyTiIglEQTakSV~Ld~fqFPkKslilLG~EkEGIPvnLl~~LD~cvEIpQ~GviRSLNVHVsgAl~ 1467 (1477)
T KOG0839 1396 --------KKKEGYTIIGLEQTAKSVKLDNFQFPKKSLILLGTEKEGIPVNLLSELDLCVEIPQFGVIRSLNVHVSGALI 1467 (1477)
T ss_pred --------HHHCCCEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHEECCCCCEEEEEEEEHHHHHH
T ss_conf --------663682798423205501100134775326882265358837799997676132122445566410447889
Q ss_pred HHHHHHHHC
Q ss_conf 999999621
Q gi|254780904|r 165 VWECMENSI 173 (268)
Q Consensus 165 lYEl~r~~~ 173 (268)
.||.-||..
T Consensus 1468 iweYTrQqr 1476 (1477)
T KOG0839 1468 IWEYTRQQR 1476 (1477)
T ss_pred HHHHHHHHC
T ss_conf 999888840
No 16
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=98.29 E-value=1.3e-06 Score=61.44 Aligned_cols=135 Identities=23% Similarity=0.333 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH------HHHC------CCCCCCHHCCCCHHHHHHCC-------CCC
Q ss_conf 7999999999719980498088889999999998------5310------13444200137789984125-------531
Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS------SANA------DCVIDSVRVFSNLKEAIADL-------HFI 87 (268)
Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~------a~~a------~~~~~~~~~~~~~~~a~~~~-------~~~ 87 (268)
-|=-|+|+|..||+..-++|.|-.+-- .-+.+. ..|+ ..-+...++..++++++++. ..+
T Consensus 29 DiHDIAR~~rTYgv~~yyiVtPl~~Q~-~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~ai~~i~~~~G~~p~v 107 (185)
T pfam09936 29 DIHDIARSARTYGVGRYYIVTPLEAQQ-ALVERILAHWQEGYGGEYNPDRKEALSLVKVVSSLEEAIEDIEKRTGQRPLI 107 (185)
T ss_pred CHHHHHHHHHCCCCCCEEEECCHHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE
T ss_conf 477754555004776679956019999-9999999873259786669678999857300602999999999961999779
Q ss_pred EEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0120112234303412420356665531158816999945888424310001232220-476787341016889999999
Q gi|254780904|r 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~-IPt~~~~~SLNLS~AvaIvlY 166 (268)
++|+++...+... ..+.. ... .....++.|+||. +.||+.|.++.||+++. |-..++|--|-|=.||+|+|=
T Consensus 108 vaTsAr~~~~~is---~~~lr-~~i--~~~~~P~LllFGT-GwGL~~e~~~~~D~iLePI~g~~~yNHLSVRsAaAIilD 180 (185)
T pfam09936 108 VATSARKRPNTIS---YEELR-KMI--QEREKPVLLLFGT-GWGLAPEVLEQADYVLEPIRGAGDYNHLSVRSAAAIILD 180 (185)
T ss_pred EEECCCCCCCCCC---HHHHH-HHH--HCCCCCEEEEECC-CCCCCHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9804756899739---99999-998--4458818999658-768779999746866705636999762049999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780904|r 167 ECM 169 (268)
Q Consensus 167 El~ 169 (268)
-++
T Consensus 181 RLl 183 (185)
T pfam09936 181 RLL 183 (185)
T ss_pred HHH
T ss_conf 870
No 17
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=98.11 E-value=3e-05 Score=52.80 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=96.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC---HHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 6899942888547999999999719980498088889999---9999985310134442001377899841255310120
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~---~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
.+|+|.++..+.-+=-++|.+.+||+..|.+..+....-. +++.+.| ...-...-+++++++|+.-..--+...
T Consensus 3 v~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla---~k~G~~vlvf~dL~DAlevL~P~v~ll 79 (147)
T COG4080 3 VIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLA---FKLGKPVLVFPDLDDALEVLRPDVTLL 79 (147)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHH---HHHCCCEEEEHHHHHHHHHCCCCEEEE
T ss_conf 79999427755899999999713685389997125476663568899999---983994798522778997459756998
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
............+. ..-.+++.+||+.=+-|++..|+++-+....| ...+..++ -+++|+|||+.+.
T Consensus 80 ~~~~~~~ek~~dp~---------e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~ 146 (147)
T COG4080 80 VGSASEGEKKLDPN---------EKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA 146 (147)
T ss_pred ECCCCCCCCCCCCC---------CCCCCEEEEEEECCCCCCCHHHCCCCCCEEEE-EECCCHHH---HHHHHHHHHHHCC
T ss_conf 14764432347943---------12463379999268877586660567727999-84464178---8899999998704
No 18
>pfam04407 DUF531 Protein of unknown function (DUF531). Family of hypothetical archaeal proteins.
Probab=96.57 E-value=0.036 Score=33.44 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=80.8
Q ss_pred CEEEEECCCCCC-----HHHHHHHH---HHHCCCCEEEECC-CCCCCCCHHHHHHHHHC----C-CCC----CCHHC-CC
Q ss_conf 689994288854-----79999999---9971998049808-88899999999985310----1-344----42001-37
Q gi|254780904|r 15 PVIILVDPQLGE-----NIGMVARA---MWNFNLTQLRLVN-PRDGWPSEKARSSSANA----D-CVI----DSVRV-FS 75 (268)
Q Consensus 15 ~~vVLv~p~~p~-----NiGaiaRa---~~~fG~~~L~lv~-P~~~~~~~~a~~~a~~a----~-~~~----~~~~~-~~ 75 (268)
.+++|++.-|+. +.-||||+ |.+||| +|.|++ |....+.+-+...+... . .++ +.-++ ..
T Consensus 2 lTl~LyNtYd~~k~~e~H~RaIARAapic~Af~~-~LAL~~FP~~~~~~el~~~v~~~TtIG~~G~yl~~L~~~nr~~i~ 80 (174)
T pfam04407 2 LTLGLYNTYDKKKVHEAHYRAIARAAPICYAFGF-HLALFGFPFDMTPKELAEYVADKTTIGESGKYLLELAESNKLHVI 80 (174)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 3799984468775660899999846047664178-779877988778799999976427327767999999874967898
Q ss_pred CHH--HHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 789--984125531012011223430341242035666553115881699994588842431000123222047678734
Q gi|254780904|r 76 NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 (268)
Q Consensus 76 ~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~ 153 (268)
++. .........++|+..-.. .... ...+.....-.++.++++||=-.+||..+.++.|++.+-|- +.-=
T Consensus 81 d~p~k~fp~qfG~~IaTT~kPd~--~K~~----~p~eia~~~l~~~s~~lliGLGr~GLPk~i~~~a~yHldiT--gkgI 152 (174)
T pfam04407 81 DFPKKGFPPQFGEVVATTSKPDE--KKAI----TPEDVAREALRNKSFLLLIGLGRHGLPKELFESARYHLDIT--GKGV 152 (174)
T ss_pred ECCCCCCCHHCCCEEEECCCCCC--CCCC----CHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCHHHEEEC--CCCE
T ss_conf 36300383320965887789984--5578----97999998742886799994078888699986431106612--7831
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 1016889999999999
Q gi|254780904|r 154 SLNISQAVLLMVWECM 169 (268)
Q Consensus 154 SLNLS~AvaIvlYEl~ 169 (268)
||-...|.+.+.-.+.
T Consensus 153 sLETcTAiGaI~a~i~ 168 (174)
T pfam04407 153 SLETCTAIGAIPARIY 168 (174)
T ss_pred EEEECHHHHHHHHHHH
T ss_conf 3662045616999999
No 19
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.0021 Score=41.24 Aligned_cols=135 Identities=23% Similarity=0.311 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH-------------HHCCCCCCCHHCCCCHHHHHHCC-------CC
Q ss_conf 79999999997199804980888899999999985-------------31013444200137789984125-------53
Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-------------ANADCVIDSVRVFSNLKEAIADL-------HF 86 (268)
Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a-------------~~a~~~~~~~~~~~~~~~a~~~~-------~~ 86 (268)
.+--|+|+|-++.+..-+||.|-.. ....+..- ......+.......++++.+.+. .+
T Consensus 30 D~HDIaR~artYeikgYyiV~pidA--Q~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~rPL 107 (190)
T COG4752 30 DLHDIARPARTYEIKGYYIVQPIDA--QRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRRPL 107 (190)
T ss_pred CHHHHCCCCCCEEECCEEEEEECHH--HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 4766325335035512799754378--89999999988762648767957888877776998899999998864477765
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220-47678734101688999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~-IPt~~~~~SLNLS~AvaIvl 165 (268)
.++|+++...+...... ....-...+++..++||. +.||+.|.++..|+++. |-.++++.-|-|-.||+|++
T Consensus 108 i~~TsAr~~~N~isy~~------lr~~I~e~dkp~LilfGT-GwGlpde~m~~sDYiLEPIra~sd~NHLSVRaAvAIIl 180 (190)
T COG4752 108 IVGTSARTYPNTISYSW------LRNEIQERDKPWLILFGT-GWGLPDELMNTSDYILEPIRAASDWNHLSVRAAVAIIL 180 (190)
T ss_pred EEECCCCCCCCCCCHHH------HHHHHHHCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 98513300678544888------887876337867999637-88998799877667232133057753153888899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780904|r 166 WECME 170 (268)
Q Consensus 166 YEl~r 170 (268)
--+|-
T Consensus 181 DRLfg 185 (190)
T COG4752 181 DRLFG 185 (190)
T ss_pred HHHHC
T ss_conf 99852
No 20
>pfam09895 DUF2122 RecB-family nuclease (DUF2122). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=94.68 E-value=0.097 Score=30.72 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred HHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 99999853101344420013778998412553101201122343034124203566655311588169999458884243
Q gi|254780904|r 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 (268)
Q Consensus 55 ~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~ 134 (268)
+++.+.| ...-.+..+++++.+|+.-..--........... .........++++|||+..+.|+|.
T Consensus 9 Pe~~KlA---~K~gk~llvl~dl~DAiEvL~P~~v~~i~~~~~~-----------~~~~~l~~~~rvllvf~G~e~gfsk 74 (105)
T pfam09895 9 PEVFKLA---LKLGKSLLVLPDLKDAIELLKPDVVYLLSRAAEG-----------IKKEVLKVEGRVLLVFSGAEPGFSK 74 (105)
T ss_pred HHHHHHH---HHCCCCEEEECCHHHHHHHHCCCEEEEECCCCCC-----------CCHHHHHCCCCEEEEECCCCCCCCH
T ss_conf 4999999---9819958983877889987298779997576656-----------2034553058389998189889796
Q ss_pred CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1000123222047678734101688999999999
Q gi|254780904|r 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268)
Q Consensus 135 eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268)
.|++.-+....--+..+..++ -+++|+||++
T Consensus 75 ~El~~g~~v~~~~v~~~iG~i---g~~Ai~Ly~l 105 (105)
T pfam09895 75 IELELGEAVYIKGVESDVGPI---GALAIILYLL 105 (105)
T ss_pred HHHCCCCEEEEECCCCCCCCH---HHHHHHHHHC
T ss_conf 561488447860365566628---8999999509
No 21
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=90.72 E-value=1.3 Score=23.60 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=45.2
Q ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 1348968999428885479-999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..-++..|..++. +.|| .|.+.++.-||+ +++++.|....|.++....+..... ....++.++++++++.+.+.
T Consensus 149 g~l~gl~i~~vGD--~~nV~~Sl~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~--~~i~~~~d~~ea~~~aDviy 223 (308)
T PRK00779 149 GSIKGKTVAWVGD--GNNVANSLLLAAALLGF-DLRVATPKGYEPDPEIVAKARAIAE--ASIEVTHDPEEAVKGADVVY 223 (308)
T ss_pred CCCCCCEEEEECC--CCCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHCC--CCEEEECCHHHHHCCCCEEE
T ss_conf 8677875999838--74539999999997799-8999888302789999999997468--95899839999962599998
No 22
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=88.83 E-value=1.8 Score=22.67 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 8885479-99999999719980498088889999999998531-0134442001377899841255310120
Q gi|254780904|r 22 PQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 22 p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
.-++-|+ .+.+.+|.-||. +++++.|+..+|+++.+..|.. +...-..+.+..+..+|+++.+.+..-+
T Consensus 200 ~g~~~nv~~sl~~~~a~lGm-dv~ia~P~gy~p~~~~v~~A~~~A~~sG~~i~iT~D~~eAv~gADvIYTDv 270 (395)
T PRK07200 200 YGKPLSVPQGIIGLMTRFGM-DVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKS 270 (395)
T ss_pred CCCHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCEEECCC
T ss_conf 77422689999999977497-499978987798989999999999983998999679999957999997278
No 23
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.43 E-value=3.2 Score=21.19 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=76.4
Q ss_pred CEEEEECCCCCCH-----HHHHHHH---HHHCCCCEEEECC-CCCCCCCHHHHHHHH----HC-CCCCCC---HHCCCCH
Q ss_conf 6899942888547-----9999999---9971998049808-888999999999853----10-134442---0013778
Q gi|254780904|r 15 PVIILVDPQLGEN-----IGMVARA---MWNFNLTQLRLVN-PRDGWPSEKARSSSA----NA-DCVIDS---VRVFSNL 77 (268)
Q Consensus 15 ~~vVLv~p~~p~N-----iGaiaRa---~~~fG~~~L~lv~-P~~~~~~~~a~~~a~----~a-~~~~~~---~~~~~~~ 77 (268)
..|.|++.-||-- .-||||+ |-+|+|. |.|.+ |......+-+--.+. |. ..++.. ...+.-+
T Consensus 2 ltiglyNtYD~~r~heaH~RaIARAAPicyAF~fh-Lal~~FPf~~~~~Elae~va~~TTIGesG~yl~~L~e~n~l~~~ 80 (178)
T COG1772 2 LTIGLYNTYDKKRIHEAHLRAIARAAPICYAFNFH-LALIDFPFKGTEKELAEEVAEKTTIGESGKYLLVLAESNKLHVI 80 (178)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCE-EEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 27997405683578899999987536535874242-78977877898799999987517006773224756863945885
Q ss_pred HH----HHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99----84125531012011223430341242035666553115881699994588842431000123222047678734
Q gi|254780904|r 78 KE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 (268)
Q Consensus 78 ~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~ 153 (268)
+- ....+..+++|+.+-. ......+. +.......++...+++|=-.+||..|.++.|-|.+-|-- .=-
T Consensus 81 D~p~kgfp~qfG~vvaTTskPd--~~k~i~p~----dva~~~lr~ks~~~~iGLGr~GLPke~~~~~~YHLDiT~--kgv 152 (178)
T COG1772 81 DKPKKGFPPQFGEVVATTSKPD--EKKAIKPI----DVAEEALRGKSFTFLIGLGRHGLPKEMFKSAKYHLDITD--KGV 152 (178)
T ss_pred CCCCCCCCHHHCCEEEECCCCC--CCCCCCHH----HHHHHHHCCCCEEEEEECCCCCCCHHHHHHCEEEEEECC--CCC
T ss_conf 1665569711185553336898--00145766----679998468956999844777886999853024463136--731
Q ss_pred CHHHHHHHHHH
Q ss_conf 10168899999
Q gi|254780904|r 154 SLNISQAVLLM 164 (268)
Q Consensus 154 SLNLS~AvaIv 164 (268)
||--..|.+++
T Consensus 153 SLETcTAIGaI 163 (178)
T COG1772 153 SLETCTAIGAI 163 (178)
T ss_pred EEEEHHHHCCH
T ss_conf 02311243126
No 24
>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=83.60 E-value=3.4 Score=20.97 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=78.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC--CC-C------H----HHHHHH-HHCCCCCCCHHCCCCHHHH
Q ss_conf 8999428885479999999997199804980888-89--99-9------9----999985-3101344420013778998
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG--WP-S------E----KARSSS-ANADCVIDSVRVFSNLKEA 80 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~--~~-~------~----~a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268)
+.++.-+--|.+.--+++-+.-.|++.++.+.-. +. +. + + -+..++ ......+.......++.++
T Consensus 63 i~l~~al~K~~~~~~il~k~tElGV~~i~p~~~ers~~k~~~~~~~~k~~R~~~i~~~A~eQs~r~~lP~I~~~~~l~~~ 142 (225)
T pfam04452 63 ITLAQALPKGDRLELILQKATELGVDRIVPLISERSVVKLDGKRADKKLERWQKIAIEAAEQSGRTRLPEVLPPISLKEL 142 (225)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHH
T ss_conf 79999500727899999999862876579998403545443034666599999999999997199828777266899999
Q ss_pred HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE--EECCCCCCCCCHHHH
Q ss_conf 412553101201122343034124203566655311588169999458884243100012322--204767873410168
Q gi|254780904|r 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNIS 158 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~--v~IPt~~~~~SLNLS 158 (268)
+................ ...............+++.++.|+|+ |.|.+|++..... ..+-..+ ..|=.-
T Consensus 143 l~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~--~ILR~E 213 (225)
T pfam04452 143 LEELDDADKLILHEEAA------KSLGELSELLASLKGGKVLLIIGPEG-GFSPEEIELLKEAGFTPVSLGP--RILRTE 213 (225)
T ss_pred HHHCCCCCEEEEECCCC------CCCCCCHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCC--CCCCHH
T ss_conf 96186688899926655------44321012321035784589988988-9999999999988998984799--946078
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780904|r 159 QAVLLMVW 166 (268)
Q Consensus 159 ~AvaIvlY 166 (268)
+|+..++-
T Consensus 214 TA~i~als 221 (225)
T pfam04452 214 TAALAALS 221 (225)
T ss_pred HHHHHHHH
T ss_conf 59999999
No 25
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=81.05 E-value=4.3 Score=20.37 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 99999999719980498088889999999998531-0134442001377899841255310
Q gi|254780904|r 29 GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 29 GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
-+.+.++..||+ +++++.|....+.++.+..+.. +...-....++.++++++++.+.+.
T Consensus 191 ~Sl~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDVvy 250 (357)
T TIGR03316 191 QGIIGLMTRFGM-DVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVY 250 (357)
T ss_pred HHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEE
T ss_conf 999999997598-099977842367879999999999981992899759999956899998
No 26
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=80.69 E-value=4.4 Score=20.29 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=46.3
Q ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCCCHHCCCCHHHHHHCCCCC
Q ss_conf 1348968999428885479-999999997199804980888899999999985310-13444200137789984125531
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLHFI 87 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a-~~~~~~~~~~~~~~~a~~~~~~~ 87 (268)
..-++..|+.++-- ..|+ -+.+.++..||+ +++++.|....|++.....+..- ...-....++.++++++++.+.+
T Consensus 151 g~l~gl~i~~vGD~-~nnVa~S~~~~~~~lG~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDVv 228 (331)
T PRK02102 151 GPLKGLKLAYLGDG-RNNMANSLLVGGAKLGM-DVRICAPKSLWPEEELVAQAKEIAKETGAKITITEDVEEAVKGADVI 228 (331)
T ss_pred CCCCCCEEEEECCC-CCCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCEE
T ss_conf 87567738997887-64246689999985598-59997586448897999999999998299389995666663357656
Q ss_pred E
Q ss_conf 0
Q gi|254780904|r 88 Y 88 (268)
Q Consensus 88 ~ 88 (268)
.
T Consensus 229 y 229 (331)
T PRK02102 229 Y 229 (331)
T ss_pred E
T ss_conf 5
No 27
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=80.26 E-value=4.6 Score=20.20 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=53.8
Q ss_pred CCEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCC--CCHHCCCCHHHHHHCCCCCEEE
Q ss_conf 96899942888547-99999999971998049808888999999999853101344--4200137789984125531012
Q gi|254780904|r 14 GPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--DSVRVFSNLKEAIADLHFIYAT 90 (268)
Q Consensus 14 ~~~vVLv~p~~p~N-iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~--~~~~~~~~~~~a~~~~~~~~~~ 90 (268)
|..|..++--...| +.|.+.++.-||++ ++++.|....++++....+....... .....+.+..+++.+.+.+...
T Consensus 2 g~~i~~vGD~~~~rv~~S~~~~~~~~g~~-v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvyt~ 80 (155)
T pfam00185 2 GLKVAIVGDGKHNRVAHSLILALAKFGME-VVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVYTD 80 (155)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEE
T ss_conf 98999983787274999999999984998-99987852388889999999998862897499984999984539999997
Q ss_pred E
Q ss_conf 0
Q gi|254780904|r 91 T 91 (268)
Q Consensus 91 ~ 91 (268)
.
T Consensus 81 ~ 81 (155)
T pfam00185 81 R 81 (155)
T ss_pred E
T ss_conf 6
No 28
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=79.81 E-value=4.7 Score=20.11 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 489689994288854799-99999997199804980888899999999985310-1344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a-~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
.++..++.+.-- .|++ +.+=+++-||+ +++++.|+..+|+++.+..|... ...-....+..+..+|+++.+.+..
T Consensus 151 l~g~k~a~vGDg--NNv~~Sl~~~~a~~G~-dv~ia~P~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyT 227 (310)
T COG0078 151 LKGLKLAYVGDG--NNVANSLLLAAAKLGM-DVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYT 227 (310)
T ss_pred CCCCEEEEECCC--CHHHHHHHHHHHHHCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEE
T ss_conf 668579997676--3699999999998298-6899789867869899999999998539848986398898578999983
Q ss_pred E
Q ss_conf 2
Q gi|254780904|r 90 T 90 (268)
Q Consensus 90 ~ 90 (268)
-
T Consensus 228 D 228 (310)
T COG0078 228 D 228 (310)
T ss_pred C
T ss_conf 6
No 29
>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional
Probab=76.25 E-value=6 Score=19.46 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=80.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC---CCC----H-------HHHHHH-HHCCCCCCCHHCCCCHHHH
Q ss_conf 899942888547999999999719980498088889---999----9-------999985-3101344420013778998
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG---WPS----E-------KARSSS-ANADCVIDSVRVFSNLKEA 80 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~---~~~----~-------~a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268)
+.++..+--+...=-+++-|.-.|++.++.+.-.-. +.+ . -+..++ ......+.......++.++
T Consensus 78 i~L~~al~K~~~~e~il~k~tElGV~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~eQs~r~~lP~i~~~~~l~~~ 157 (243)
T PRK11713 78 LTLAQALPKGDRLELIIQKATELGVSAIIPLITERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEIRPPVSLKEL 157 (243)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHH
T ss_conf 79999600755899999999872877799997000545212105666699999999999997099828776576799999
Q ss_pred HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf 41255310120112234303412420356665531158816999945888424310001232220476787341016889
Q gi|254780904|r 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268)
+...... .......+..............+++.++.|+|+ |.|.+|++.....=-.|.+=.-..|=..+|
T Consensus 158 l~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~vsLG~~ILR~ETA 227 (243)
T PRK11713 158 LEALADG---------DLRLVLHPEANLAAALKSLKPAGKVLLLIGPEG-GFSPEEIELLREAGFTPVSLGPRILRTETA 227 (243)
T ss_pred HHHCCCC---------CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 9538677---------828998688775432011257885899987888-999999999998898898679991357749
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780904|r 161 VLLMVWECM 169 (268)
Q Consensus 161 vaIvlYEl~ 169 (268)
+...|--+.
T Consensus 228 ~i~als~l~ 236 (243)
T PRK11713 228 ALAALAALQ 236 (243)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 30
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=76.02 E-value=6.1 Score=19.42 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 48968999428885479-99999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
-++..|+.++--+ .|+ .+.++++.-||+ +++++.|+...|+++....+.. +........+..+..+++++.+.+..
T Consensus 154 l~~lkia~vGD~~-nnv~~Sl~~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDviyt 231 (334)
T PRK03515 154 FNEMTLAYAGDAR-NNMGNSLLEAAALTGL-DLRLVAPKACWPEAALVTECQALAQKNGGNITLTEDIAEGVKGADFIYT 231 (334)
T ss_pred CCCEEEEEECCCC-CCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCEEEE
T ss_conf 5664899957876-5458999999985497-4999779756888789999999999719918996045655157878873
No 31
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=75.10 E-value=6.4 Score=19.27 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=46.2
Q ss_pred HCCCCCCEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCC
Q ss_conf 2134896899942888547-999999999719980498088889999999998531-01344420013778998412553
Q gi|254780904|r 9 QNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHF 86 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~p~N-iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~ 86 (268)
...-++..|..++--. .| .-+.+.++.-||+ +++++.|+...|.++....+.. +...-....++.+.++++.+.+.
T Consensus 150 ~~~~~~lkva~vGD~~-nnVa~S~~~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~av~~aDv 227 (332)
T PRK04284 150 KKPYADINFTYVGDGR-NNVANALMQGAAIMGM-NFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDV 227 (332)
T ss_pred CCCCCCCEEEEECCCC-CCHHHHHHHHHHHCCC-CEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCE
T ss_conf 3665672899967988-6511579999997599-3799758555889999999999999719908995149888525889
Q ss_pred CEE
Q ss_conf 101
Q gi|254780904|r 87 IYA 89 (268)
Q Consensus 87 ~~~ 89 (268)
+..
T Consensus 228 iyt 230 (332)
T PRK04284 228 IYT 230 (332)
T ss_pred EEE
T ss_conf 987
No 32
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.59 E-value=7 Score=19.04 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=80.6
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC--CCCH----------HHHHHHHH-CCCCCCCHHCCCCHHHHHHC
Q ss_conf 99428885479999999997199804980888-89--9999----------99998531-01344420013778998412
Q gi|254780904|r 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG--WPSE----------KARSSSAN-ADCVIDSVRVFSNLKEAIAD 83 (268)
Q Consensus 18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~--~~~~----------~a~~~a~~-a~~~~~~~~~~~~~~~a~~~ 83 (268)
+....-.+.++=.+++-+.-+|++.++.+.-. |- +..+ -++.++.- ....+..+....++.+.+..
T Consensus 82 l~~~~~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~l~~ 161 (246)
T COG1385 82 LAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESLKELLKE 161 (246)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCEEEEEEECEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf 99962751889999999987180117988501267720011036899999999999986499869826231309999985
Q ss_pred CCC----CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHH
Q ss_conf 553----1012011223430341242035666553115881699994588842431000123222047678734101688
Q gi|254780904|r 84 LHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 (268)
Q Consensus 84 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~ 159 (268)
.+. ............... ........+++.+++|+|+ |+|++|+++....=..|..-.-..|=--.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~l~~~g~~~v~LGprILRtET 231 (246)
T COG1385 162 IDDEDALKLIYEEKAKEGLLAL---------PLLEALPEGKVLLIIGPEG-GFSEDEIELLREAGFTPVSLGPRILRTET 231 (246)
T ss_pred CCCHHHHHHEECCCCCCCCCCC---------HHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEECCCCCEEEHHH
T ss_conf 4630013322254454454333---------0120156773899988998-99989999999779858137897200778
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780904|r 160 AVLLMVWEC 168 (268)
Q Consensus 160 AvaIvlYEl 168 (268)
|+...+--+
T Consensus 232 A~l~ala~i 240 (246)
T COG1385 232 AALAALAAL 240 (246)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 33
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=69.21 E-value=8.7 Score=18.42 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=49.1
Q ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 48968999428-8854799999999971-998049808888999999999853101344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDP-QLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p-~~p~NiGaiaRa~~~f-G~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
-++..|+.++- .+..|+-+.++.+..| |+ +++++.|+...+.+......... -....+..+.++++.+.+.+..
T Consensus 157 l~glkia~vGD~~~~r~~~s~~~ll~~~~g~-~~~l~~P~~~~~p~~~~~~~~~~---g~~i~~~~d~~~a~~~aDvvy~ 232 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLCMYKNI-SFTLISPKELAMPDYVISDIENA---GHKITITDQLEGNLDKADILYL 232 (338)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHC---CCEEEEEECHHHHHCCCEEEEE
T ss_conf 5574899976777563899999999965598-89998998778999999999984---9949997288897236849995
Q ss_pred E
Q ss_conf 2
Q gi|254780904|r 90 T 90 (268)
Q Consensus 90 ~ 90 (268)
+
T Consensus 233 ~ 233 (338)
T PRK08192 233 T 233 (338)
T ss_pred C
T ss_conf 7
No 34
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=65.69 E-value=10 Score=17.98 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf 999999971998049808888999999
Q gi|254780904|r 30 MVARAMWNFNLTQLRLVNPRDGWPSEK 56 (268)
Q Consensus 30 aiaRa~~~fG~~~L~lv~P~~~~~~~~ 56 (268)
+.+.++..||+ +++++.|....|.+.
T Consensus 172 S~~~~~~~lG~-~v~i~~P~~~~p~~~ 197 (334)
T PRK01713 172 SLLLIGAKLGM-DVRICAPKALLPEDS 197 (334)
T ss_pred HHHHHHHHCCC-EEEEECCCCCCCCHH
T ss_conf 99999997799-799988976587889
No 35
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=63.11 E-value=11 Score=17.68 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCHHHHH-HHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCC
Q ss_conf 5479999-999997199-80498088889999999998531013444200137789984125531012011223
Q gi|254780904|r 25 GENIGMV-ARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96 (268)
Q Consensus 25 p~NiGai-aRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (268)
.||||+. +-++...|+ ++|.|++.......-.+.=.+..+........+.....+++++++.++.+.+..+.
T Consensus 8 aG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG~~rk 81 (306)
T cd05291 8 AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQK 81 (306)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCCCCCC
T ss_conf 69889999999985799877999818987017699988701330599739960887884789999990676679
No 36
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=62.50 E-value=12 Score=17.61 Aligned_cols=188 Identities=15% Similarity=0.181 Sum_probs=98.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
+....|++|=.-=.+|.-+...++-+..+|++.+= +| +..|.+++.+...|+.-..+...+..-+....+.++.-+.
T Consensus 61 ~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~ID-lN--~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVT 137 (333)
T PRK11815 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEIN-LN--VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVT 137 (333)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEC-CC--CCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 98779879997479999999999999873988535-23--8998688732780178707999999999999873488535
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHH-HCCCCCEEEEEECCC--CCCCCCC------------CCCCCCEEECCC--CCCC
Q ss_conf 2011223430341242035666553-115881699994588--8424310------------001232220476--7873
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRER--WGLTNEE------------IALSNAIISFPV--NPLF 152 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~valVFG~E~--~GLs~ee------------l~~cd~~v~IPt--~~~~ 152 (268)
...|.+.... ............ ...+-....|=||-. .|||..+ .+.+..+-+||. ||+.
T Consensus 138 vK~RlG~d~~---d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI 214 (333)
T PRK11815 138 VKHRIGIDDQ---DSYEFLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred EEEECCCCCC---CHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7863167777---5289999999999975998899960278772678777505873048999999976678718845996
Q ss_pred CCHHHHHHHH-----HH----HHH---HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4101688999-----99----999---99962136654443333346888899999999999987
Q gi|254780904|r 153 PSLNISQAVL-----LM----VWE---CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205 (268)
Q Consensus 153 ~SLNLS~Ava-----Iv----lYE---l~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l~~ 205 (268)
.|+.=+.... |. +|. +|++....-. ......+.-.+.++.+++|++..+..
T Consensus 215 ~s~~~~~~~l~~~DGVMiGRga~~nPwif~~id~~~~--g~~~~~~s~~ei~~~~~~y~~~~~~~ 277 (333)
T PRK11815 215 KTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELF--GEPAPVPSREEVLEAMLPYIEAHLAQ 277 (333)
T ss_pred CCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998559962114867559978999999984--89999999999999999999999984
No 37
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=59.99 E-value=13 Score=17.33 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=37.6
Q ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 8968999428885479-99999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r 13 KGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 13 ~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
++..|+.+.--+ .|+ =+.+.++.-||+ +++++.|....|++.....+.. +...-....+..+.++++++.+.+..
T Consensus 155 ~~l~i~~vGD~~-n~va~S~i~~~~~lG~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvyt 231 (334)
T PRK12562 155 NEMTLVYAGDAR-NNMGNSMLEAAALTGL-DLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYT 231 (334)
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCEEEE
T ss_conf 771899968886-6357999999997498-6999789766888899999999999709928998468887057878986
No 38
>TIGR00046 TIGR00046 conserved hypothetical protein TIGR00046; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry are predicted to belong to the family of Mtases, based on a crystal structure showing close structural homology to known methyltransferases ..
Probab=59.81 E-value=6.3 Score=19.31 Aligned_cols=131 Identities=17% Similarity=0.282 Sum_probs=70.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-------CCCCCCCHH-------HHHHH-HHCCCCCCCHHCCCCHHHH
Q ss_conf 89994288854799999999971998049808-------888999999-------99985-3101344420013778998
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-------PRDGWPSEK-------ARSSS-ANADCVIDSVRVFSNLKEA 80 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~-------P~~~~~~~~-------a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268)
+-+.-..-.+.++=.|+|-+.-.|+..+.+.. +...-...| +..++ -+....+..+..+.++...
T Consensus 82 ~~~~~~~~~g~~~e~ii~~~~eLGv~~~~p~~~ers~~k~~~~~~~~K~~rw~KI~~eA~eQs~r~~~P~i~~~~~l~ql 161 (258)
T TIGR00046 82 IHLAIVLIKGKKMEKIIRKLTELGVSKIIPLNAERSVVKLDIERAIKKLERWQKIVIEAAEQSGRNIVPEIKVPKNLKQL 161 (258)
T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 89999753212342565456764678998888865304855778875778889999999862779989843205678999
Q ss_pred ---HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHH-HCCCCCEEEEEECCCCCCCCCCCCCCCC--EEECCCCC
Q ss_conf ---4125531012011223430341242035666553-1158816999945888424310001232--22047678
Q gi|254780904|r 81 ---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNA--IISFPVNP 150 (268)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~valVFG~E~~GLs~eel~~cd~--~v~IPt~~ 150 (268)
..+.+++..... ........+.......... ....+.+.||+|+|+ |+|..|...... ...|+.++
T Consensus 162 lqr~Q~~e~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~GPEG-Gfse~E~~~~~~~~f~~~~L~~ 233 (258)
T TIGR00046 162 LQRMQDVEKLAESEE---EALKLNFHPEASPLSANLEQIEQAGKIVIIIGPEG-GFSEKEIQLLKEKGFTPVLLGP 233 (258)
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHCCCEECCCCC
T ss_conf 998656876410010---13232210033111200122005570489981699-9688899999882982413788
No 39
>pfam02598 DUF171 Uncharacterized ACR, COG2106.
Probab=56.98 E-value=9.8 Score=18.11 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=24.5
Q ss_pred EEECCCCCC----HHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 994288854----79999999997199804980888
Q gi|254780904|r 18 ILVDPQLGE----NIGMVARAMWNFNLTQLRLVNPR 49 (268)
Q Consensus 18 VLv~p~~p~----NiGaiaRa~~~fG~~~L~lv~P~ 49 (268)
||.+.+++. =+|-|||+|.-|+++++++-+..
T Consensus 10 il~n~~~~e~~T~~~gqIARaaaIF~VdEIvV~dd~ 45 (283)
T pfam02598 10 ILSNAQSLEQKTYKAGQIARAATIFRVDEIVIYDDS 45 (283)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 956689999999999999999984176679998488
No 40
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=56.17 E-value=10 Score=17.93 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.1
Q ss_pred ECCCCCCHHHHHH--HHHHHCCCCEEEECCCCC
Q ss_conf 4288854799999--999971998049808888
Q gi|254780904|r 20 VDPQLGENIGMVA--RAMWNFNLTQLRLVNPRD 50 (268)
Q Consensus 20 v~p~~p~NiGaia--Ra~~~fG~~~L~lv~P~~ 50 (268)
+.-+|+.|+|+++ |.++.+|+. -|+|+|-.
T Consensus 101 ~~G~haSnLGaiiA~~ia~~~gvP-ayIVDPvv 132 (358)
T COG3426 101 VQGEHASNLGAIIANRIAKALGVP-AYIVDPVV 132 (358)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCC-EEEECCEE
T ss_conf 887551225679999876640997-16667500
No 41
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=53.55 E-value=17 Score=16.67 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 4896899942888547-9999999997199804980888899999999985310-1344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~N-iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a-~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
-++..|..++- .-| ..+.+.++..||+ +++++.|....+.++....+... ...-....++.++++++++.+.+..
T Consensus 153 l~glkva~vGD--~~nv~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt 229 (341)
T PRK02255 153 LEDCKVVFVGD--ATQVCSSLMFITTKMGM-DFVHFGPKGFQLPEEHLAIARENCEVSGGSVLVTDDADEAVKDADFIYT 229 (341)
T ss_pred CCCCEEEEECC--CCHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEE
T ss_conf 45656887268--53448899999997599-8999879746899999999999999739979999788887257987851
No 42
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=52.81 E-value=17 Score=16.59 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=4.8
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999971
Q gi|254780904|r 28 IGMVARAMWNF 38 (268)
Q Consensus 28 iGaiaRa~~~f 38 (268)
+--++|.+..|
T Consensus 95 l~Dt~~vls~y 105 (335)
T PRK04523 95 IAEVARVLSRY 105 (335)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999843
No 43
>pfam07047 OPA3 Optic atrophy 3 protein (OPA3). This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity.
Probab=51.23 E-value=18 Score=16.50 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 410168899999999999621366
Q gi|254780904|r 153 PSLNISQAVLLMVWECMENSIVSS 176 (268)
Q Consensus 153 ~SLNLS~AvaIvlYEl~r~~~~~~ 176 (268)
+..=.+.|+++++||.+|++....
T Consensus 81 E~fIF~Va~~li~~E~~Rs~~ke~ 104 (134)
T pfam07047 81 EAFIFSVAGGLLVYEYQRSSRKEA 104 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999842476
No 44
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=51.14 E-value=18 Score=16.43 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=3.9
Q ss_pred HHHHHHCCCC
Q ss_conf 9999971998
Q gi|254780904|r 32 ARAMWNFNLT 41 (268)
Q Consensus 32 aRa~~~fG~~ 41 (268)
--+|.-.|..
T Consensus 63 e~A~~~LGg~ 72 (304)
T PRK00856 63 ELAAKRLGAD 72 (304)
T ss_pred HHHHHHCCCE
T ss_conf 9999838966
No 45
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=50.60 E-value=18 Score=16.37 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=57.9
Q ss_pred EEECCCCC-CHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 99428885-4799-9999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r 18 ILVDPQLG-ENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 18 VLv~p~~p-~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
=++=.-|. -||+ +.+=+|+-||. ++++..|..-.|+++.+..|.- +...--......+..+|+++.+.+..
T Consensus 166 k~vy~GDgRNNVcnSL~la~a~~Gm-~~~v~tP~gyeP~~~~v~~A~~~a~e~Gg~~~lt~Dp~eAv~gADv~YT 239 (341)
T TIGR00658 166 KVVYVGDGRNNVCNSLLLAAAKLGM-DVVVATPEGYEPDAEIVKKAKKIAKENGGSVELTHDPKEAVKGADVIYT 239 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEE
T ss_conf 6899737851268899999997285-4788788888878789999999997179859996377986128978997
No 46
>COG2106 Uncharacterized conserved protein [Function unknown]
Probab=50.21 E-value=14 Score=17.08 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 547999999999719980498088
Q gi|254780904|r 25 GENIGMVARAMWNFNLTQLRLVNP 48 (268)
Q Consensus 25 p~NiGaiaRa~~~fG~~~L~lv~P 48 (268)
-.-+|-|||+++-||++.+++..-
T Consensus 25 T~Kvg~IARaaaiF~V~eIii~~D 48 (272)
T COG2106 25 TYKVGQIARAAAIFRVDEIIIYED 48 (272)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 888999998987606547999958
No 47
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain; InterPro: IPR006497 This set of protein sequences, defined by an N-terminal domain, represent phage lambda replication protein O and other homologous phage and prophage proteins. ; GO: 0006260 DNA replication.
Probab=50.10 E-value=15 Score=16.99 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999863169998999999999999998410342113
Q gi|254780904|r 217 KMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRN 257 (268)
Q Consensus 217 ~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~~~~~~~ 257 (268)
+|...|-..+.+++|+.||.+.|..|+++=-=+-++..|-.
T Consensus 9 r~~N~L~e~~~~~~L~~Ref~v~~Ai~R~T~Gyn~~~~rvt 49 (104)
T TIGR01610 9 RMDNELLEALAGADLSGREFRVLLAILRLTYGYNKEADRVT 49 (104)
T ss_pred EECHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 00337888741487843579999999987415666035666
No 48
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; InterPro: IPR010139 Imidazole glycerol phosphate synthetase (IGPS) is a key metabolic enzyme, which links amino acid and nucleotide biosynthesis: it catalyses the closure of the imidazole ring within histidine biosynthesis (fifth step), and provides the substrate for de novo purine biosynthesis. IGPS consists of two different subunits: HisH, a glutamine amidotransferase (glutaminase), and HisF, a synthase (cyclase). HisH functions to provide a source of nitrogen, which is required for the synthesis of histidine and purines. In the HisH glutaminase reaction, the hydrolysis of glutamine yields ammonia, which is then used by HisF in the subsequent synthase reaction. The X-ray structure of the HisH/HisF heterodimer of IGPS reveals a putative tunnel for the transfer of ammonia from HisH to HisF via a (beta-alpha)8 barrel fold within HisF that abuts HisH . Ammonia tunnels connect the glutaminase and synthase active sites. HisH belongs to a large group of enzymes found in diverse and fundamental anabolic pathways. These enzymes share a common domain, referred to as the type-I glutamine amidotransferase (GATase) domain, which can occur either as single polypeptides (as with HisH) or as domains of large multifunctional proteins.; GO: 0016763 transferase activity transferring pentosyl groups, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=49.46 E-value=17 Score=16.64 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.0
Q ss_pred CCCHHHH----HHHHHHHCCCCEEEECCC
Q ss_conf 8547999----999999719980498088
Q gi|254780904|r 24 LGENIGM----VARAMWNFNLTQLRLVNP 48 (268)
Q Consensus 24 ~p~NiGa----iaRa~~~fG~~~L~lv~P 48 (268)
..|||+| +.||.+.+|+...+..++
T Consensus 7 G~GNL~SlyrGV~~Al~~~G~~~~v~~~~ 35 (211)
T TIGR01855 7 GVGNLRSLYRGVKRALKRVGAEPVVVKDS 35 (211)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 71656889999999998449817996286
No 49
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase; InterPro: IPR006238 This group of sequences represent cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys..
Probab=47.79 E-value=20 Score=16.10 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=19.6
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 588169999458884243100012
Q gi|254780904|r 117 SGQNVGIIFGRERWGLTNEEIALS 140 (268)
Q Consensus 117 ~~~~valVFG~E~~GLs~eel~~c 140 (268)
-.++++++.=+|+.||+.-+--+|
T Consensus 229 ~~~~~yF~~Ns~G~gLaP~DswLL 252 (415)
T TIGR01329 229 IAKKVYFLINSTGAGLAPFDSWLL 252 (415)
T ss_pred HHHHEEEEECCCCCCCCHHHHHHH
T ss_conf 100011123366776651358999
No 50
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=46.29 E-value=19 Score=16.28 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.1
Q ss_pred CCCCCHHHHHH--HHHHHCC-CCEEEECCCCCC
Q ss_conf 88854799999--9999719-980498088889
Q gi|254780904|r 22 PQLGENIGMVA--RAMWNFN-LTQLRLVNPRDG 51 (268)
Q Consensus 22 p~~p~NiGaia--Ra~~~fG-~~~L~lv~P~~~ 51 (268)
=+|+-|+|+|+ +.++-++ +- -++|+|-.=
T Consensus 100 GeHASNLGaIIA~~lA~~~~diP-afIVDPVVV 131 (353)
T TIGR02707 100 GEHASNLGAIIARELADELNDIP-AFIVDPVVV 131 (353)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCC-EEEECCCEE
T ss_conf 87843368999999876518943-588268335
No 51
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=45.16 E-value=19 Score=16.23 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=27.6
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 9942888547999999999719980498088889999
Q gi|254780904|r 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54 (268)
Q Consensus 18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~ 54 (268)
++|+ +.|+|-++-+|+--|+...+++.-+.-.|+
T Consensus 9 lFVe---~eNvGkaiN~mad~GiTGFfl~eYrGvsPd 42 (110)
T COG4075 9 LFVE---EENVGKAINIMADAGITGFFLHEYRGVSPD 42 (110)
T ss_pred EEEC---HHHHHHHHHHHHHCCCCEEEEEEECCCCHH
T ss_conf 7752---778878999988547536999884475846
No 52
>pfam00427 PBS_linker_poly Phycobilisome Linker polypeptide.
Probab=44.16 E-value=23 Score=15.75 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9987289987543899999999986316999899999999999
Q gi|254780904|r 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 (268)
Q Consensus 202 ~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~ 244 (268)
-+-+..|+.+-.+...+...++++|+|+..++.|+.-..-++.
T Consensus 58 ~~yr~~f~~~~~~~r~iEl~~khlLGRap~~~~E~~~~~~i~a 100 (131)
T pfam00427 58 ELYRKRFFEPNSNYRVIELNFKHLLGRAPYNQAEISAHSIILA 100 (131)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9999986026660299999999971899999999999999999
No 53
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=43.05 E-value=24 Score=15.64 Aligned_cols=70 Identities=21% Similarity=0.094 Sum_probs=41.7
Q ss_pred CHHHHH-HHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf 479999-999997199-8049808888999999999853101344420013778998412553101201122
Q gi|254780904|r 26 ENIGMV-ARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 (268)
Q Consensus 26 ~NiGai-aRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (268)
||||+. |=++...|+ ++|.|++-..+....++.=.............+.....+.+++++.++.+.+..+
T Consensus 10 g~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~~~ 81 (142)
T pfam00056 10 GGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGVPR 81 (142)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCCCC
T ss_conf 789999999997479663478850577641179999861443478876974883888378999998157778
No 54
>KOG0848 consensus
Probab=41.83 E-value=8.2 Score=18.61 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=23.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC
Q ss_conf 1699989999999999999984103421136644201014
Q gi|254780904|r 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 (268)
Q Consensus 228 R~~l~~~E~~~L~Gil~~l~~~~~~~~~~~~~~~~~~~~~ 267 (268)
-..|++|.|.|.+-=-|.=+++.++.++ ++|++.++
T Consensus 235 ~LgLsERQVKIWFQNRRAKERK~nKKk~----~~q~q~~~ 270 (317)
T KOG0848 235 TLGLSERQVKIWFQNRRAKERKDNKKKR----LQQQQQPP 270 (317)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC
T ss_conf 6071176666765410277777777777----88755589
No 55
>KOG0062 consensus
Probab=39.05 E-value=28 Score=15.25 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=8.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999428885479999999
Q gi|254780904|r 17 IILVDPQLGENIGMVARA 34 (268)
Q Consensus 17 vVLv~p~~p~NiGaiaRa 34 (268)
..||||+.---|-+|+=.
T Consensus 220 LLLDEPTNhLDv~av~WL 237 (582)
T KOG0062 220 LLLDEPTNHLDVVAVAWL 237 (582)
T ss_pred EEECCCCCCCHHHHHHHH
T ss_conf 865487531016789999
No 56
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=38.95 E-value=28 Score=15.24 Aligned_cols=77 Identities=21% Similarity=0.142 Sum_probs=43.7
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHCCCCCEEEECC
Q ss_conf 899942888547999-99999971998049808888999999999853101344420-0137789984125531012011
Q gi|254780904|r 16 VIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFSNLKEAIADLHFIYATTAR 93 (268)
Q Consensus 16 ~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 93 (268)
-|.++. .||||+ +|-++...|+.+|.|++........++.=.+.+........ .......+.+++++.++.|.+.
T Consensus 9 KV~IIG---aG~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVitAG~ 85 (322)
T PTZ00082 9 KISLIG---SGNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVTAGL 85 (322)
T ss_pred CEEEEC---CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCCC
T ss_conf 299989---69899999999963899779999788980088999876636446888579837999997799999989888
Q ss_pred CC
Q ss_conf 22
Q gi|254780904|r 94 NR 95 (268)
Q Consensus 94 ~~ 95 (268)
.+
T Consensus 86 ~~ 87 (322)
T PTZ00082 86 AK 87 (322)
T ss_pred CC
T ss_conf 77
No 57
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=37.91 E-value=29 Score=15.14 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCHHHHHH--HHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHCCCC-CCCHHCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf 54799999--999971--99804980888899999999985310134-4420013778998412553101201122
Q gi|254780904|r 25 GENIGMVA--RAMWNF--NLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEAIADLHFIYATTARNR 95 (268)
Q Consensus 25 p~NiGaia--Ra~~~f--G~~~L~lv~P~~~~~~~~a~~~a~~a~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (268)
.||||+.+ +.+..- .+++|+|++.......-.+.=....+... ...........+++++++.++.|.+..+
T Consensus 7 ~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag~~~ 82 (263)
T cd00650 7 GGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGR 82 (263)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECCCCC
T ss_conf 9779999999998289999988999958987208799999854523578739974873898379989999057788
No 58
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=37.76 E-value=29 Score=15.12 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=49.4
Q ss_pred CCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 3489689994288854799-999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 11 SAKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 11 ~~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
.-++-.|.+++. |.+| .+++.....|+.+++++|.. -+++...+..-......+.-+.++.+.+..++.++.
T Consensus 9 ~l~~~~vlVIGa---G~~~~~~~~~L~~~g~~~i~v~nRt----~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~ 81 (134)
T pfam01488 9 DLKGKKVLLIGA---GEMARLAAKHLLSKGAKKITIANRT----LEKAKELAEEFGGEEVEALPLDELEELLAEADIVIS 81 (134)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCC----HHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEE
T ss_conf 814898999996---0999999999997599889995475----789999999849972589851354413631999999
Q ss_pred EECCCC
Q ss_conf 201122
Q gi|254780904|r 90 TTARNR 95 (268)
Q Consensus 90 ~~~~~~ 95 (268)
.++...
T Consensus 82 aT~s~~ 87 (134)
T pfam01488 82 ATSAPT 87 (134)
T ss_pred ECCCCC
T ss_conf 259997
No 59
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=36.84 E-value=30 Score=15.03 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 158816999945888424310001232220476787341016889999999999962
Q gi|254780904|r 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268)
Q Consensus 116 ~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268)
..+.++.+|.|.|. .+.+.-++|||-++|-..|.-+. .|.||+|-.|+...
T Consensus 100 ~~~~~ilvVVGaeK--VP~evyelADyNVaVgNQPHSEV----AALAiFLDrl~~G~ 150 (175)
T PRK03958 100 KTCKPLLIIVGAEK--VPREVYELADYNVAVGNQPHSEV----AALAVFLDRLFEGK 150 (175)
T ss_pred CCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCCHHH----HHHHHHHHHHCCCC
T ss_conf 57887899967886--99889743454155178870899----99999999860672
No 60
>PTZ00117 malate dehydrogenase; Provisional
Probab=36.52 E-value=31 Score=15.00 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=44.6
Q ss_pred EEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHC-CCCHHHHHHCCCCCEEEECCC
Q ss_conf 999428885479999-999997199804980888899999999985310134442001-377899841255310120112
Q gi|254780904|r 17 IILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLHFIYATTARN 94 (268)
Q Consensus 17 vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 94 (268)
|.++. .||||+. |-++..-|+.+|+|++.......-++.=.+......-....+ .....+.+++++.++.|.+..
T Consensus 4 V~IIG---aG~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~ 80 (313)
T PTZ00117 4 ISIIG---SGQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVITAGVQ 80 (313)
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEECCCCC
T ss_conf 99989---798999999999708998799995889830889988772420368985798379999968999999898998
Q ss_pred C
Q ss_conf 2
Q gi|254780904|r 95 R 95 (268)
Q Consensus 95 ~ 95 (268)
+
T Consensus 81 r 81 (313)
T PTZ00117 81 R 81 (313)
T ss_pred C
T ss_conf 9
No 61
>PRK08638 threonine dehydratase; Validated
Probab=33.79 E-value=34 Score=14.73 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=34.4
Q ss_pred CCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 8854799-99999997199804980888899999999985310134442001377899841
Q gi|254780904|r 23 QLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 (268)
Q Consensus 23 ~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~ 82 (268)
-..||-| ++|-+++.+|+. .+++=|...++.+...-.+-|+..++ ...+++++..
T Consensus 81 aSsGN~g~avA~~a~~~G~~-~~I~~P~~~~~~K~~~~~~~GA~Vi~----~~~~~~~a~~ 136 (329)
T PRK08638 81 CSAGNHAQGVALSCALLGID-GKVVMPKGAPKSKVAATCGYGAEVVL----HGDNFNDTIA 136 (329)
T ss_pred ECCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHCCCCEE----CCCCHHHHHH
T ss_conf 56886799999999983986-59858898879999999972875143----1786489999
No 62
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=33.33 E-value=34 Score=14.68 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCHHH-HHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHC-CCCCCCHHCCCCHHHHHHCCCCCEEEECCC
Q ss_conf 854799-99999997199-804980888899999999985310-134442001377899841255310120112
Q gi|254780904|r 24 LGENIG-MVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLHFIYATTARN 94 (268)
Q Consensus 24 ~p~NiG-aiaRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~a-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (268)
..|+|| ++|-++...|+ ++|+|++.......-++.=..... ........+.....+.+++++.++.|.+..
T Consensus 6 GaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG~~ 79 (307)
T cd05290 6 GAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCCC
T ss_conf 96989999999998569988799992889823799998761203589986586679989946999999867776
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=32.75 E-value=35 Score=14.62 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=6.7
Q ss_pred EEEEECCCCCCH
Q ss_conf 899942888547
Q gi|254780904|r 16 VIILVDPQLGEN 27 (268)
Q Consensus 16 ~vVLv~p~~p~N 27 (268)
+.++++|...|=
T Consensus 25 i~~I~G~NGsGK 36 (880)
T PRK02224 25 VTVIHGLNGSGK 36 (880)
T ss_pred EEEEECCCCCCH
T ss_conf 589989999988
No 64
>KOG0626 consensus
Probab=32.49 E-value=35 Score=14.59 Aligned_cols=83 Identities=19% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH-HHH-HCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCC-CCCHHHHHHHHHHHHH
Q ss_conf 01688999999999-996-213665------4443333346888899999999999987-289-9875438999999999
Q gi|254780904|r 155 LNISQAVLLMVWEC-MEN-SIVSSE------KNVKEQNTPATKGELLSFLDYLEISLEE-RGY-FRPVEKKKKMLDDLYS 224 (268)
Q Consensus 155 LNLS~AvaIvlYEl-~r~-~~~~~~------~~~~~~~~~a~~~~l~~~~~~l~~~l~~-~~f-~~~~~~~~~~~~~lrr 224 (268)
|=||||.++=+|.- ++. ++.... .-.+.....++...-+...+.+...... ..| -.|.++++.+-.+|
T Consensus 243 llLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rL-- 320 (524)
T KOG0626 243 LLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRL-- 320 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC--
T ss_conf 999999999999976224029847689842243248998678999999987632243226645886799999853247--
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q ss_conf 8631699989999999999
Q gi|254780904|r 225 IFIRPELMREEVFLLRGIV 243 (268)
Q Consensus 225 l~~R~~l~~~E~~~L~Gil 243 (268)
-..|++|..+|.|-.
T Consensus 321 ----P~FT~ee~~~lKGS~ 335 (524)
T KOG0626 321 ----PKFTEEESKLLKGSY 335 (524)
T ss_pred ----CCCCHHHHHHHCCCH
T ss_conf ----878989997745762
No 65
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=31.34 E-value=19 Score=16.33 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999986316
Q gi|254780904|r 218 MLDDLYSIFIRP 229 (268)
Q Consensus 218 ~~~~lrrl~~R~ 229 (268)
..+.=||+|+|.
T Consensus 435 TPr~HRRfLgR~ 446 (506)
T TIGR02730 435 TPRTHRRFLGRE 446 (506)
T ss_pred CCCCCHHHCCCC
T ss_conf 886202212568
No 66
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=31.29 E-value=37 Score=14.47 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCC-CCHHHHHHCCCCCEEEECCC
Q ss_conf 547999-99999971998049808888999999999853101344420013-77899841255310120112
Q gi|254780904|r 25 GENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-SNLKEAIADLHFIYATTARN 94 (268)
Q Consensus 25 p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 94 (268)
.|+||+ ++-++..-|+.+|+|++-......-.+.=.+..+.......++. ....+.+++++.++.|.+..
T Consensus 6 aG~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~~ 77 (300)
T cd01339 6 AGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIP 77 (300)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCC
T ss_conf 688899999999857996799980999800579887761320158985899478879947998999906778
No 67
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=30.66 E-value=38 Score=14.40 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCCHH-HHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC------
Q ss_conf 85479-9999999971998-049808888999999999853101344420013778998412553101201122------
Q gi|254780904|r 24 LGENI-GMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR------ 95 (268)
Q Consensus 24 ~p~Ni-GaiaRa~~~fG~~-~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 95 (268)
..|-| |++|++++..|.. .++-++ .+++....|.....+ ...+.++.+++.+++.++..+.-..
T Consensus 13 GlGLIGgSlA~alk~~~~~~~I~g~d-----~~~~~l~~A~~~g~i---d~~~~~~~e~~~~~DlIilatPv~~~~~vl~ 84 (307)
T PRK07502 13 GLGLIGSSLARAIRRQGLAGEIVGAA-----RSAETRARARELGLG---DRVTTSAAEAVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred EECHHHHHHHHHHHHCCCCCEEEEEE-----CCHHHHHHHHHCCCC---CHHCCCHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 27879999999998549985799984-----999999999986997---5112777664045897999178999999999
Q ss_pred ----CC-CEE-EECCCCHHHHHHHHH--CCCCCEEE-----EEECCCCCCCCCCCCCCCC--EEECCCCCCCCCHHHHHH
Q ss_conf ----34-303-412420356665531--15881699-----9945888424310001232--220476787341016889
Q gi|254780904|r 96 ----NN-FKS-VLAPKEAAIVLNERI--FSGQNVGI-----IFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQA 160 (268)
Q Consensus 96 ----~~-~~~-~~~~~~~~~~~~~~~--~~~~~val-----VFG~E~~GLs~eel~~cd~--~v~IPt~~~~~SLNLS~A 160 (268)
.. ... +.............. .....+-+ +.|+|.+|..+..-.+.+. ++-.|.... + ..+
T Consensus 85 ~l~~~l~~~~ivTDvgSvK~~I~~~~~~~~~~~~~FVg~HPmAGsE~sG~~~A~~~LF~~~~~iltp~~~~-~----~~~ 159 (307)
T PRK07502 85 EIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-D----PAA 159 (307)
T ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCC-C----HHH
T ss_conf 99855589968996632118999999985677783672688767887551010014743870899679999-9----999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999962136654443333346888899999999999
Q gi|254780904|r 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 (268)
Q Consensus 161 vaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~ 202 (268)
+. .+.++|+..+.... .-.+..++++-.+.+|+-.+
T Consensus 160 ~~-~v~~lw~~lGa~v~-----~m~~~eHD~~~A~~SHLPHl 195 (307)
T PRK07502 160 VA-RLRAFWRALGARVE-----EMDPEHHDLVLAITSHLPHL 195 (307)
T ss_pred HH-HHHHHHHHCCCEEE-----EECHHHHHHHHHHHHHHHHH
T ss_conf 99-99999996398799-----94645775688866015899
No 68
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=30.37 E-value=38 Score=14.37 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=50.3
Q ss_pred HHHHHCCCCCEEEEEECC-CCCCCCCCCCCCCCEEECCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 655311588169999458-88424310001232220476787--34101688999999999996213665444
Q gi|254780904|r 111 LNERIFSGQNVGIIFGRE-RWGLTNEEIALSNAIISFPVNPL--FPSLNISQAVLLMVWECMENSIVSSEKNV 180 (268)
Q Consensus 111 ~~~~~~~~~~valVFG~E-~~GLs~eel~~cd~~v~IPt~~~--~~SLNLS~AvaIvlYEl~r~~~~~~~~~~ 180 (268)
...+...-+...++|++| +.+... ..+|.++.+|-.+. .|-+++...++++.|++-...+.+.++|.
T Consensus 550 Nv~Ev~ARga~vi~~~~~~~~~~~~---~~~d~~i~~P~~~~~~~P~~~l~iplQLlAYhiA~~kG~DvDkPR 619 (628)
T TIGR01135 550 NVEEVKARGARVIVLASEDDAELIA---AIADDIIKLPEVEELLAPIVYLTIPLQLLAYHIALAKGTDVDKPR 619 (628)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCC---CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8998872696389982577532431---105458884688863041667679999999999997086436875
No 69
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=30.16 E-value=39 Score=14.35 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89999999999999984103421136
Q gi|254780904|r 233 REEVFLLRGIVSTLDKFSRQSSRRNN 258 (268)
Q Consensus 233 ~~E~~~L~Gil~~l~~~~~~~~~~~~ 258 (268)
.|+++.|.|++.+|....-..+|+-+
T Consensus 192 ~R~~~~l~~~l~~Ld~~sl~~kr~IT 217 (226)
T TIGR03420 192 SRDMGSLMALLDALDRASLAAKRKIT 217 (226)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 79899999999999999998089999
No 70
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=30.00 E-value=39 Score=14.33 Aligned_cols=215 Identities=13% Similarity=0.041 Sum_probs=112.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
....+|.+|=.--.+|.-+...++.+...|++. +=+| +..|.+++.+...|+.-..+...+..-+.......+.-+.
T Consensus 61 ~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~-IDiN--~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVT 137 (321)
T PRK10415 61 VDEPGIRTVQIAGSDPKEMADAARINVESGAQI-IDIN--MGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVT 137 (321)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCE-EEEE--CCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 678898059972699999999999887649998-9431--8999899707983650633989999999999734487469
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHH-CCCCCEEEEEECCC----CCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHHHH
Q ss_conf 20112234303412420356665531-15881699994588----84243-10001232220476787341016889999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRER----WGLTN-EEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~valVFG~E~----~GLs~-eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268)
...|.+.... . ....+..... ..+-....|=||-. +|-.+ +.+..+-..++||.-++=+..+...|..+
T Consensus 138 vKiRlG~~~~-~----~~~~~~~~~~e~aG~~~itvHgRT~~q~y~g~adw~~i~~vk~~~~iPvi~NGDI~~~~da~~~ 212 (321)
T PRK10415 138 LKIRTGWAPE-H----RNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 212 (321)
T ss_pred EEEECCCCCC-H----HHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHH
T ss_conf 9984688852-2----4399999999856988999972213443169987799999985479978965891999999999
Q ss_pred HHHH----------------HHHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999----------------999621366544433333468-88899999999999987289987543899999999986
Q gi|254780904|r 164 MVWE----------------CMENSIVSSEKNVKEQNTPAT-KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 (268)
Q Consensus 164 vlYE----------------l~r~~~~~~~~~~~~~~~~a~-~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~ 226 (268)
.-+- +|++........ ...++.+ .+..+-+.+|+..+.+..| +.+--.++++.-..+
T Consensus 213 l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g--~~~~~~~~~e~~~~~~~h~~~~~~~~g----~~~~~~~~Rkh~~~Y 286 (321)
T PRK10415 213 LDYTGADALMIGRAAQGRPWIFREIQHYLDTG--ELLPPLPLAEVKRLLCAHVRELHDFYG----PAKGYRIARKHVSWY 286 (321)
T ss_pred HHHHCCCEEEECHHHHCCCHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_conf 98629999997566536987799999998169--979996999999999999999999869----075699999789999
Q ss_pred HHCCCCHHHHHH
Q ss_conf 316999899999
Q gi|254780904|r 227 IRPELMREEVFL 238 (268)
Q Consensus 227 ~R~~l~~~E~~~ 238 (268)
.+..+...+++-
T Consensus 287 ~kg~~g~~~~R~ 298 (321)
T PRK10415 287 LQEHAPNDQFRR 298 (321)
T ss_pred HCCCCCHHHHHH
T ss_conf 588987699999
No 71
>PRK13172 consensus
Probab=29.99 E-value=39 Score=14.33 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-|||+|+.|++...|++-.++
T Consensus 10 G~GNi~Sv~~al~~lg~~~~i~ 31 (213)
T PRK13172 10 GVGNLLSVARAFQYFDASVNLV 31 (213)
T ss_pred CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9429999999999869988997
No 72
>pfam09353 DUF1995 Domain of unknown function (DUF1995). This family of proteins are functionally uncharacterized.
Probab=29.93 E-value=39 Score=14.32 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 89994288854799999999971998049808888
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD 50 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~ 50 (268)
++|+|.|+ |.++..+-+.|..+|-.-+++.||+-
T Consensus 98 ~~i~v~P~-~~~~~~ve~~~e~~~~rpvvllNprL 131 (205)
T pfam09353 98 LLILVAPQ-PSDLEEVEALCELAGGRPVIMLNPRL 131 (205)
T ss_pred EEEEECCC-HHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 89998187-42299999999983797599986753
No 73
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=29.88 E-value=39 Score=14.32 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 41016889999999999962136654443333346888899999999999987
Q gi|254780904|r 153 PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205 (268)
Q Consensus 153 ~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l~~ 205 (268)
-..-+||+|+|-|-|+..+...-+.. .-+|.++=..|-++|.+.|++
T Consensus 48 a~Ik~AQ~vGipL~~I~~ALa~LP~g------rtPt~~DW~rlS~~W~~~Lde 94 (142)
T TIGR01950 48 AVIKVAQRVGIPLAEIAEALAELPEG------RTPTADDWARLSSQWKEELDE 94 (142)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHHHH
T ss_conf 74332332589888999999734688------998888899998850188899
No 74
>PRK13173 consensus
Probab=29.86 E-value=39 Score=14.32 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-|||+++.|+....|++-.++
T Consensus 10 g~gNi~Sv~~al~~lg~~~~i~ 31 (211)
T PRK13173 10 GMGNLHSASKALSAVGAEVSIT 31 (211)
T ss_pred CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9449999999999869988996
No 75
>pfam07611 DUF1574 Protein of unknown function (DUF1574). A family of hypothetical proteins in Leptospira interrogans.
Probab=29.45 E-value=19 Score=16.27 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHHCCCCCEEEEEECCCCCC-CCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 53115881699994588842-431000123222047678734101688999999999996
Q gi|254780904|r 113 ERIFSGQNVGIIFGRERWGL-TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 113 ~~~~~~~~valVFG~E~~GL-s~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
......++++|+||+-+.|. +++.++. -.++....|.|.+++.-.|.++..
T Consensus 57 ~~~~k~kk~li~fG~SR~~~F~~~~i~k--------kypdw~lyNFS~P~~~P~y~~y~l 108 (345)
T pfam07611 57 KKPKEKKKLLILFGSSRMLYFSNDDIEK--------KYPDWDLYNFSSPVATPVYYLYWL 108 (345)
T ss_pred CCCHHHCEEEEEECCCCCCCCCHHHHHH--------HCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 2681012599996266422444566786--------389954886048989824999999
No 76
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase; InterPro: IPR012767 This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis..
Probab=29.27 E-value=19 Score=16.31 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=18.2
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 158816999945888424310001232220476787
Q gi|254780904|r 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151 (268)
Q Consensus 116 ~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~ 151 (268)
-..+.+.|-|..+ +....+-.+=-.+|+.|.
T Consensus 152 l~~G~i~L~~d~~-----~g~~~l~yyd~~lP~~p~ 182 (971)
T TIGR02401 152 LDRGEIKLRLDEE-----DGTLALRYYDHRLPLAPG 182 (971)
T ss_pred HHCCCCEEEECCC-----CCCHHHHHHHCCCCCCHH
T ss_conf 7368615785054-----470888861103775804
No 77
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=27.93 E-value=42 Score=14.11 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 854799999999971998049808
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRLVN 47 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268)
.-|||+++.|+....|++-.++-+
T Consensus 10 g~GNi~Sv~~al~~~g~~~~ii~~ 33 (210)
T CHL00188 10 SMGNLHSVSRAIQQAGQQPCIINS 33 (210)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 847899999999986998799799
No 78
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=27.87 E-value=42 Score=14.10 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88899999999999987-289987543899999999986
Q gi|254780904|r 189 KGELLSFLDYLEISLEE-RGYFRPVEKKKKMLDDLYSIF 226 (268)
Q Consensus 189 ~~~l~~~~~~l~~~l~~-~~f~~~~~~~~~~~~~lrrl~ 226 (268)
..-...+.+.+.++... .-|+.-.+++ .++..--+++
T Consensus 131 ~~N~~r~~~~i~el~~~~sQfIiITH~~-~~m~~ad~l~ 168 (178)
T cd03239 131 PTNRRRVSDMIKEMAKHTSQFIVITLKK-EMFENADKLI 168 (178)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHCCEEE
T ss_conf 8899999999999973899899998689-9997478589
No 79
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=27.77 E-value=43 Score=14.09 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8854799999999971998049808
Q gi|254780904|r 23 QLGENIGMVARAMWNFNLTQLRLVN 47 (268)
Q Consensus 23 ~~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268)
-.|.-|+-|+|+++-||+.++-|-+
T Consensus 46 Ls~eei~~~~~~a~~fGV~kvKlTG 70 (324)
T TIGR02668 46 LSPEEIERIVRVASEFGVRKVKLTG 70 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 5899999999999870883277517
No 80
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.64 E-value=43 Score=14.08 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-||+++++|+....|++-.++
T Consensus 8 g~gNi~Sv~~al~~lg~~~~i~ 29 (201)
T PRK13152 8 KAGNLNSVAKAFEKIGAINFIA 29 (201)
T ss_pred CCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9427999999999869988997
No 81
>pfam04013 DUF358 Protein of unknown function (DUF358). The proteins in this family are around 200 amino acids long with the exception of the Archaeoglobus fulgidus protein AF_1056 that has an additional 100 amino acids at its amino terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal binding site.
Probab=27.09 E-value=44 Score=14.01 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=36.8
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8169999458884243100012322204767873410168899999999999
Q gi|254780904|r 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 119 ~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268)
...++|+|-- .|++.++.+.-..+-..+.+=.-.+|=-+|+++|+-|++=+
T Consensus 146 ~~~~FiL~Dh-~~~~~~e~~~L~~~~~~~iSLGp~~L~a~hcI~ivH~~LD~ 196 (199)
T pfam04013 146 NNPVFILGDH-IGLPEEDEKFLERILALKVSLGPLSLHASHCITLVHNHLDR 196 (199)
T ss_pred CCCEEEECCC-CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 8976985599-99886788888644882155373888875799999998731
No 82
>PRK13153 consensus
Probab=25.40 E-value=47 Score=13.82 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-|||+++.|++...|++--++
T Consensus 8 g~gNi~Sv~~al~~lg~~~~ii 29 (203)
T PRK13153 8 NAGNLASVINAFEKIGAKARLE 29 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9328999999999869988997
No 83
>PRK13177 consensus
Probab=25.22 E-value=47 Score=13.80 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 854799999999971998049808
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRLVN 47 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268)
.-|||+++.|+....|++.+++..
T Consensus 11 g~GNi~Sv~~al~~~g~~~~~i~~ 34 (207)
T PRK13177 11 GAGNLRSVHNALKAAGAEGVVVTA 34 (207)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 932799999999982998289958
No 84
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=25.18 E-value=5.3 Score=19.76 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=27.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf 9994288854799999999971998049808888999999
Q gi|254780904|r 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 (268)
Q Consensus 17 vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~ 56 (268)
|=|.==.|-|..+.|+.+...-|+..+++- ...||+.
T Consensus 70 VTLEPC~H~GkTpPC~~aIi~agI~rVvia---~~DPnp~ 106 (367)
T PRK10786 70 VTLEPCSHHGRTPPCCDALIAAGVARVVAA---MQDPNPQ 106 (367)
T ss_pred EEECCCCCCCCCCHHHHHHHHHCCCEEEEE---CCCCCCC
T ss_conf 983573467989459999998289889996---8898821
No 85
>PRK13174 consensus
Probab=24.79 E-value=48 Score=13.75 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 854799999999971998049808
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRLVN 47 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268)
.-||++++.|+....|++..++..
T Consensus 10 G~gNi~Sv~~al~~~g~~~~~i~~ 33 (212)
T PRK13174 10 GMGNLHSVAKALEHVGAGRVLVTS 33 (212)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 810799999999974998799838
No 86
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.64 E-value=49 Score=13.73 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 88547999999999719980498
Q gi|254780904|r 23 QLGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 23 ~~p~NiGaiaRa~~~fG~~~L~l 45 (268)
-.-||++++.|+....|++-.++
T Consensus 8 yG~GNi~Sv~~al~~lg~~~~i~ 30 (196)
T PRK13170 8 TGCANLSSVKFAFERLGYNPVVS 30 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 79558999999999879979996
No 87
>PRK12493 magnesium chelatase; Provisional
Probab=23.85 E-value=50 Score=13.64 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHCCCCCCEEEEEC-CCCCCHHHH------------HHHHHHHCCCC
Q ss_conf 532134896899942-888547999------------99999971998
Q gi|254780904|r 7 QLQNSAKGPVIILVD-PQLGENIGM------------VARAMWNFNLT 41 (268)
Q Consensus 7 ~l~~~~~~~~vVLv~-p~~p~NiGa------------iaRa~~~fG~~ 41 (268)
...++.|.++|||.+ |-.-||||+ +.+.|+.-|.+
T Consensus 434 ~k~n~eKKVAIIl~NyPp~~g~iGtAa~LDvp~Sl~~iL~~Lk~~GY~ 481 (1318)
T PRK12493 434 RKPRAEKKLAITLFSFPPDKGNVGTAAYLDVFGSIHRLLQELKAAGYD 481 (1318)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 587312759999417999888734032357489999999999977965
No 88
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.12 E-value=52 Score=13.55 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCEEEEECCCCCCHHHHH-HHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 968999428885479999-999997199-804980888899999999985310134442001377899841255310120
Q gi|254780904|r 14 GPVIILVDPQLGENIGMV-ARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGai-aRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
.+-|.++. .||||+. |-++...|+ ++|+|++...+...-.+.=....+............-.+.+++++.++.|.
T Consensus 3 r~Kv~IIG---aG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~~~~aDvVVitA 79 (312)
T cd05293 3 RNKVTVVG---VGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEEC---CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEECC
T ss_conf 88699989---788899999999966998879999388983326888866040127985599379999968999999889
Q ss_pred CCCC
Q ss_conf 1122
Q gi|254780904|r 92 ARNR 95 (268)
Q Consensus 92 ~~~~ 95 (268)
+..+
T Consensus 80 G~~~ 83 (312)
T cd05293 80 GARQ 83 (312)
T ss_pred CCCC
T ss_conf 9999
No 89
>PRK13180 consensus
Probab=23.09 E-value=52 Score=13.55 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-||++++.|+....|++-.++
T Consensus 10 g~gNi~Sv~~al~~~g~~~~i~ 31 (209)
T PRK13180 10 GSGNLRSAQRALERVGAEVEVT 31 (209)
T ss_pred CCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9438999999999869989997
No 90
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=22.77 E-value=53 Score=13.50 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=83.2
Q ss_pred HHHHCCCCEEE--ECCCCCCCCCHHHHHHH--HHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHH
Q ss_conf 99971998049--80888899999999985--310134442001377899841255310120112234303412420356
Q gi|254780904|r 34 AMWNFNLTQLR--LVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 (268)
Q Consensus 34 a~~~fG~~~L~--lv~P~~~~~~~~a~~~a--~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (268)
.|.-+|+..=+ =|+=-...-.|+|..+| .||.+++.... ..|..-.+|+-..+.........+....
T Consensus 215 ~~~~~gY~~~irvRvGaAGGiGtPeAvaAAF~LGA~FiVTGSv---------NQc~~EAGtSd~Vk~lLa~~~v~DtayA 285 (449)
T TIGR02814 215 LMRKYGYRKPIRVRVGAAGGIGTPEAVAAAFMLGADFIVTGSV---------NQCTVEAGTSDEVKKLLAKADVQDTAYA 285 (449)
T ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCCH---------HHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 9998278987437873577777279999997337425741861---------2003345888679999815897650136
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 66553115881699994588842431000123222047678734101688999999999996213665444333334688
Q gi|254780904|r 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 (268)
Q Consensus 110 ~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~ 189 (268)
.--+.+-.+-|+ ..|++- +=.|..-+- ||||||..++-..-+ +...
T Consensus 286 PAgDMFE~Gvkl-------------QVLKrG---tlFP~RANk------------LY~LYr~YdSle~l~------~~~r 331 (449)
T TIGR02814 286 PAGDMFELGVKL-------------QVLKRG---TLFPARANK------------LYELYRRYDSLEELD------AKTR 331 (449)
T ss_pred CCHHHHHCCCEE-------------EEEECC---CCCHHHCCH------------HHHHHCCCCCHHHCC------HHHH
T ss_conf 520054427768-------------884025---232101111------------579863898842148------7999
Q ss_pred HHHH--HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHCC
Q ss_conf 8899--9999999999872899875-43899999999986316999899999999-99999984103
Q gi|254780904|r 190 GELL--SFLDYLEISLEERGYFRPV-EKKKKMLDDLYSIFIRPELMREEVFLLRG-IVSTLDKFSRQ 252 (268)
Q Consensus 190 ~~l~--~~~~~l~~~l~~~~f~~~~-~~~~~~~~~lrrl~~R~~l~~~E~~~L~G-il~~l~~~~~~ 252 (268)
.++| -|..-|+++-+++--+.++ ..|..+.+-- .+|-.|-.=++|= +.++.+|....
T Consensus 332 ~~lE~~~Fkr~l~eVw~~T~~yy~~R~~Pa~i~rAe------~dPKhkMALvFRWYf~~ssrwA~~G 392 (449)
T TIGR02814 332 AQLEKKYFKRSLDEVWEETRAYYIGRADPAEIERAE------RDPKHKMALVFRWYFGHSSRWANTG 392 (449)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998617888899999999721689807999986------2776005789899999999986358
No 91
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.68 E-value=53 Score=13.49 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 854799999999971998049808
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRLVN 47 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268)
.-||++|+.++....|++-.++-+
T Consensus 8 G~GNi~Sv~~al~~lg~~~~i~~~ 31 (192)
T PRK13142 8 GLGNISNVKRAIEHLGYEVVVSNT 31 (192)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 945899999999985998799689
No 92
>PRK13179 consensus
Probab=21.78 E-value=55 Score=13.38 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 8547999999999719980498
Q gi|254780904|r 24 LGENIGMVARAMWNFNLTQLRL 45 (268)
Q Consensus 24 ~p~NiGaiaRa~~~fG~~~L~l 45 (268)
.-|||+++.++++..|++-.++
T Consensus 8 g~gNi~Sv~~al~~~g~~~~i~ 29 (207)
T PRK13179 8 GMGNLRSVQKGFEKVGFEAVVT 29 (207)
T ss_pred CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9358999999999859987996
No 93
>PRK06436 glycerate dehydrogenase; Provisional
Probab=20.87 E-value=58 Score=13.26 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=28.6
Q ss_pred CCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 854799-999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 24 LGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 24 ~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
.-|+|| .+||-+++||+. ++..++.... + .....+.++++.++.++.+.....
T Consensus 129 G~G~IG~~vA~~~~afg~~-V~~~~r~~~~--~-------------~~~~~~~~~~ell~~sDivslh~P 182 (303)
T PRK06436 129 GYGGIGRRVALLAKAFGMN-IYAYTRSYVN--D-------------GISSIYMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCHHHHHHHHHHHHCCCE-EEEECCCCCC--C-------------CCCEEECCHHHHHHHCCEEEEECC
T ss_conf 9765699999999977988-9998985322--4-------------574552689999975999999257
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.45 E-value=59 Score=13.21 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 88854799999999971998
Q gi|254780904|r 22 PQLGENIGMVARAMWNFNLT 41 (268)
Q Consensus 22 p~~p~NiGaiaRa~~~fG~~ 41 (268)
|+||+...+|.-.++.+|++
T Consensus 267 PRHpERf~~v~~l~~~~gl~ 286 (419)
T COG1519 267 PRHPERFKAVENLLKRKGLS 286 (419)
T ss_pred CCCHHHHHHHHHHHHHCCCE
T ss_conf 58755679999999975981
No 95
>KOG4609 consensus
Probab=20.40 E-value=57 Score=13.30 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHH
Q ss_conf 899999999986316999899
Q gi|254780904|r 215 KKKMLDDLYSIFIRPELMREE 235 (268)
Q Consensus 215 ~~~~~~~lrrl~~R~~l~~~E 235 (268)
-.+++..+||+|.|+.++++|
T Consensus 196 gaRIEaafRryfhRA~p~Qee 216 (284)
T KOG4609 196 GARIEAAFRRYFHRASPSQEE 216 (284)
T ss_pred CHHHHHHHHHHHHHCCCCCCC
T ss_conf 367899999887626833246
No 96
>pfam01765 RRF Ribosome recycling factor. The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Probab=20.13 E-value=60 Score=13.16 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 346888899999999999987289987543899999999986316999899999999999999
Q gi|254780904|r 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 (268)
Q Consensus 185 ~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~ 247 (268)
++.+.+-.+.+...+.+..++..--. ..-+...+..++++-....+++.|...+---+..+.
T Consensus 85 P~lT~E~R~~lvK~~k~~~E~aKv~i-R~iR~~~~~~iKk~~~~~~iseD~~k~~~~~iq~lt 146 (165)
T pfam01765 85 PPLTEERRKELVKQAKKLAEEAKVAI-RNIRRDANDKLKKLEKDKEISEDEVKKAEKEIQKLT 146 (165)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999999999-999999999998765049998778889999999999
Done!