HHsearch alignment for GI: 254780904 and conserved domain: pfam00588

>pfam00588 SpoU_methylase SpoU rRNA Methylase family. This family of proteins probably use S-AdoMet.
Probab=99.97  E-value=3.8e-32  Score=222.05  Aligned_cols=137  Identities=30%  Similarity=0.387  Sum_probs=115.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCC----E
Q ss_conf             96899942888547999999999719980498088889-999999998531013444200137789984125531----0
Q gi|254780904|r   14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI----Y   88 (268)
Q Consensus        14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~-~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~----~   88 (268)
T Consensus         1 p~~vvL~~i~~p~NlG~i~Rta~~fG~~~v~l~~~~~~~~~~~~~~r~s~ga~~~i~~-~~~~~~~~~~~~~~~~~~~i~   79 (142)
T pfam00588         1 PLIVVLDEPQDPGNLGAIARTAAAFGADGLILVEPRCADLYNPKAIRASAGALFHLPL-VIVDNLEEALKDLKEAGYWII   79 (142)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-EEECCHHHHHHHHHHCCCEEE
T ss_conf             9899995798877699999999983999643557876797778999997677523783-284339999999887495011


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r   89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW  166 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY  166 (268)
T Consensus        80 ~~~~~---------------~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~ly  142 (142)
T pfam00588        80 ATSLK---------------GKPLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGEVESLNVAVAAAIILY  142 (142)
T ss_pred             CCCCC---------------CCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             13446---------------7487781468872899778778989999986997999749889963549999999969