HHsearch alignment for GI: 254780904 and conserved domain: pfam00588
>pfam00588 SpoU_methylase SpoU rRNA Methylase family. This family of proteins probably use S-AdoMet.
Probab=99.97 E-value=3.8e-32 Score=222.05 Aligned_cols=137 Identities=30% Similarity=0.387 Sum_probs=115.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCC----E
Q ss_conf 96899942888547999999999719980498088889-999999998531013444200137789984125531----0
Q gi|254780904|r 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI----Y 88 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~-~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~----~ 88 (268)
T Consensus 1 p~~vvL~~i~~p~NlG~i~Rta~~fG~~~v~l~~~~~~~~~~~~~~r~s~ga~~~i~~-~~~~~~~~~~~~~~~~~~~i~ 79 (142)
T pfam00588 1 PLIVVLDEPQDPGNLGAIARTAAAFGADGLILVEPRCADLYNPKAIRASAGALFHLPL-VIVDNLEEALKDLKEAGYWII 79 (142)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-EEECCHHHHHHHHHHCCCEEE
T ss_conf 9899995798877699999999983999643557876797778999997677523783-284339999999887495011
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
T Consensus 80 ~~~~~---------------~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~ly 142 (142)
T pfam00588 80 ATSLK---------------GKPLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGEVESLNVAVAAAIILY 142 (142)
T ss_pred CCCCC---------------CCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 13446---------------7487781468872899778778989999986997999749889963549999999969