HHsearch alignment for GI: 254780904 and conserved domain: pfam04407
>pfam04407 DUF531 Protein of unknown function (DUF531). Family of hypothetical archaeal proteins.
Probab=96.57 E-value=0.036 Score=33.44 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=80.8
Q ss_pred CEEEEECCCCCC-----HHHHHHHH---HHHCCCCEEEECC-CCCCCCCHHHHHHHHHC----C-CCC----CCHHC-CC
Q ss_conf 689994288854-----79999999---9971998049808-88899999999985310----1-344----42001-37
Q gi|254780904|r 15 PVIILVDPQLGE-----NIGMVARA---MWNFNLTQLRLVN-PRDGWPSEKARSSSANA----D-CVI----DSVRV-FS 75 (268)
Q Consensus 15 ~~vVLv~p~~p~-----NiGaiaRa---~~~fG~~~L~lv~-P~~~~~~~~a~~~a~~a----~-~~~----~~~~~-~~ 75 (268)
T Consensus 2 lTl~LyNtYd~~k~~e~H~RaIARAapic~Af~~-~LAL~~FP~~~~~~el~~~v~~~TtIG~~G~yl~~L~~~nr~~i~ 80 (174)
T pfam04407 2 LTLGLYNTYDKKKVHEAHYRAIARAAPICYAFGF-HLALFGFPFDMTPKELAEYVADKTTIGESGKYLLELAESNKLHVI 80 (174)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 3799984468775660899999846047664178-779877988778799999976427327767999999874967898
Q ss_pred CHH--HHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 789--984125531012011223430341242035666553115881699994588842431000123222047678734
Q gi|254780904|r 76 NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 (268)
Q Consensus 76 ~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~ 153 (268)
T Consensus 81 d~p~k~fp~qfG~~IaTT~kPd~--~K~~----~p~eia~~~l~~~s~~lliGLGr~GLPk~i~~~a~yHldiT--gkgI 152 (174)
T pfam04407 81 DFPKKGFPPQFGEVVATTSKPDE--KKAI----TPEDVAREALRNKSFLLLIGLGRHGLPKELFESARYHLDIT--GKGV 152 (174)
T ss_pred ECCCCCCCHHCCCEEEECCCCCC--CCCC----CHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCHHHEEEC--CCCE
T ss_conf 36300383320965887789984--5578----97999998742886799994078888699986431106612--7831
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 1016889999999999
Q gi|254780904|r 154 SLNISQAVLLMVWECM 169 (268)
Q Consensus 154 SLNLS~AvaIvlYEl~ 169 (268)
T Consensus 153 sLETcTAiGaI~a~i~ 168 (174)
T pfam04407 153 SLETCTAIGAIPARIY 168 (174)
T ss_pred EEEECHHHHHHHHHHH
T ss_conf 3662045616999999