HHsearch alignment of GI: 254780904 and MMDB domain: 1k3r_A_1-84_161-268

>1k3r_A (A:1-84,A:161-268) Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus}
Probab=94.38  E-value=0.33  Score=27.00  Aligned_cols=143  Identities=13%  Similarity=0.126  Sum_probs=81.5

Q ss_pred             EEECCCCCC----HHHHHHHHHHHCCCCEEEECCCCCCCCCHH------------HHHHHH--------HC-CCCCCCHH
Q ss_conf             994288854----799999999971998049808888999999------------999853--------10-13444200
Q gi|254780904|r   18 ILVDPQLGE----NIGMVARAMWNFNLTQLRLVNPRDGWPSEK------------ARSSSA--------NA-DCVIDSVR   72 (268)
Q Consensus        18 VLv~p~~p~----NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~------------a~~~a~--------~a-~~~~~~~~   72 (268)
                      ||.+.+++.    -+|-|||+|.-|+++.+++-+........-            -.+...        .+ .+......
T Consensus        14 il~~~~~~~~~t~~~g~IARaa~if~Vdeivvy~d~~~~~~~~l~~iL~YletP~YLRk~lfp~~~~Lk~a~YWGy~Vr~   93 (192)
T 1k3r_A           14 LTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVRYWGYEVLD   93 (192)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSCCCHHHHHHHHHHHHSCHHHHHHHCCCCGGGGGGSCCCCEEEE
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEECCCCEEEEE
T ss_conf             95668998999999999999998226667999758997666899999888528887887536898563230667769997


Q ss_pred             CCCCHHHHHHCCC--CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             1377899841255--31012011223430341242035666553115881699994588842431000123222047678
Q gi|254780904|r   73 VFSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP  150 (268)
Q Consensus        73 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~  150 (268)
                      ...++.++.+.|.  ..++|+.+.....       .............+.+.+|||.=..||.....+.  ++-++|-. 
T Consensus        94 ~~~sL~~v~~~~~~dl~IgTS~~G~~i~-------~~~~~l~~~~~~~~~~lvvFGgP~~Gl~~~lfD~--~iNt~P~Q-  163 (192)
T 1k3r_A           94 TRRNLAESLKTVGADVVVATSRNASPIT-------SILDEVKTRMRGAREAAILFGGPYKGLPEIDADI--WVNTLPGQ-  163 (192)
T ss_dssp             EEEEHHHHHHHHCCSEEEEECTTSCBTT-------TSHHHHHHHHTTCSEEEEECCCSSSCCCSCCCSE--EEBSSTTC-
T ss_pred             EECCHHHCCCCCCCCEEEEECCCCCCCH-------HHCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCE--EEECCCCC-
T ss_conf             6231765631369985999799988520-------1012212345678708999898656874342684--89738998-


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             73410168899999999999
Q gi|254780904|r  151 LFPSLNISQAVLLMVWECME  170 (268)
Q Consensus       151 ~~~SLNLS~AvaIvlYEl~r  170 (268)
                      .....=.=.|+-|.|-.+.-
T Consensus       164 gsrTIRTEEAi~itLa~L~~  183 (192)
T 1k3r_A          164 CTETVRTEEAVLATLSVFNM  183 (192)
T ss_dssp             SSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
T ss_conf             87666089999999999982