HHsearch alignment of GI: 254780904 and MMDB domain: 1v2x_A_21-176
>1v2x_A (A:21-176) TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus}
Probab=99.97 E-value=1.6e-32 Score=224.06 Aligned_cols=149 Identities=18% Similarity=0.280 Sum_probs=113.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHH--HHHHCCCCCEEEE
Q ss_conf 96899942888547999999999719980498088889999999998531013444200137789--9841255310120
Q gi|254780904|r 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIADLHFIYATT 91 (268)
Q Consensus 14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~--~a~~~~~~~~~~~ 91 (268)
.++|||++|++|+|||+|+|+|++||++++++++|+++.++.+ +.++++.+...........+ ...+...+.+...
T Consensus 2 ~l~ivl~~~~~~~NiG~i~Rta~a~G~~~i~i~~~~~~~~~~~--~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T 1v2x_A 2 DLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN--ETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYAT 79 (156)
T ss_dssp TEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC--SSCSSGGGTSEEEEESSHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEE--EECCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9799996798866399999999981986120234423430000--10012214430112454223689998658853112
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
...............++++||||+|++||++++++.||.+++|||.+.++|||||+|++|+|||++|+
T Consensus 80 ------------~~~~~~~~l~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v~IP~~g~~~SLNvs~A~~I~lye~~r~ 147 (156)
T 1v2x_A 80 ------------ALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQ 147 (156)
T ss_dssp ------------CCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------------22223322101257888089966766646689997249289958999866332999999999999999
Q ss_pred HCCCC
Q ss_conf 21366
Q gi|254780904|r 172 SIVSS 176 (268)
Q Consensus 172 ~~~~~ 176 (268)
.....
T Consensus 148 ~~~~~ 152 (156)
T 1v2x_A 148 RLKAG 152 (156)
T ss_dssp HHHHT
T ss_pred HHHCC
T ss_conf 98546