HHsearch alignment of GI: 254780904 and MMDB domain: 2ha8_A_
>2ha8_A (A:) TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=99.98 E-value=4.1e-32 Score=221.47 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=125.5
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHC-CCCHHHHHHCCCCC
Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001-37789984125531
Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLHFI 87 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~-~~~~~~a~~~~~~~ 87 (268)
......+.|+|++|++|+|||+|+|+|++||++.++++++.+ ++++++.+.++|+.+.+....+ ..+++.++....
T Consensus 21 ~~~~~~~~v~l~~~~~~~NiG~i~Rta~afG~~~i~~~~~~~-~~~~~~~r~s~g~~~~~~~~~~~~~~~~~~~~~~~-- 97 (184)
T 2ha8_A 21 GKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQC-ISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKK-- 97 (184)
T ss_dssp CCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGGG-GGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHH--
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCCC-CCCHHHHEEEECCEEEECHHCCCCHHHHHHHHHHC--
T ss_conf 576788899981686863088999999962997066425555-67856620000010010101023224444555420--
Q ss_pred EEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01201122343034124203566655311588169999458884243100012322204767873410168899999999
Q gi|254780904|r 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 (268)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYE 167 (268)
........................++++||||+|+.||+++.++.||.+++|||.+.++|||||+|++|+|||
T Consensus 98 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~~I~l~e 170 (184)
T 2ha8_A 98 -------TEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWE 170 (184)
T ss_dssp -------HTTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHH
T ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHH
T ss_conf -------1222222332222233321000357855885555579999999868989996295899702599999999999
Q ss_pred HHHHHCCCC
Q ss_conf 999621366
Q gi|254780904|r 168 CMENSIVSS 176 (268)
Q Consensus 168 l~r~~~~~~ 176 (268)
++++.....
T Consensus 171 ~~r~~~~~~ 179 (184)
T 2ha8_A 171 YTRQQLLSH 179 (184)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHC
T ss_conf 998550214