HHsearch alignment of GI: 254780904 and MMDB domain: 3gyq_A_113-272

>3gyq_A (A:113-272) RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase, spout mtases, SAM, trefoil knot, antibiotic resistance; HET: SAM; 2.45A {Streptomyces cyaneus}
Probab=100.00  E-value=1.4e-34  Score=236.93  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=129.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEE
Q ss_conf             34896899942888547999999999719980498088889999999998531013444200137789984125531012
Q gi|254780904|r   11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT   90 (268)
Q Consensus        11 ~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (268)
                      .+..++|||++|++|+|||+|+|+|++||++.+++++|++.++.+++.+.++++.............+.........   
T Consensus         4 ~~~~~~ivL~~v~~p~NiGai~Rta~a~G~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---   80 (160)
T 3gyq_A            4 SRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRDSG---   80 (160)
T ss_dssp             HSCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTGGGSSCEEEECHHHHHHHHHTTT---
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCC---
T ss_conf             35873999967622778999999998344664630245422111110014552111200122232114566663000---


Q ss_pred             ECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             01122343034124203566655311588169999458884243100012322204767873410168899999999999
Q gi|254780904|r   91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME  170 (268)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r  170 (268)
                             .....................++++||||+|++||++++++.||..++|||.+.++|||||+|++|+|||+++
T Consensus        81 -------~~~~~~~~~~~~~~~~~~~~~~~~~lvlG~E~~Gls~e~l~~~d~~v~IP~~~~~~SLNvs~A~~I~lye~~~  153 (160)
T 3gyq_A           81 -------MQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERID  153 (160)
T ss_dssp             -------CEEEEECTTCSEEGGGGGGCCSCEEEEEESSTTCSCGGGTTTCCEEEECCCSCTTSCCCHHHHHHHHHHTTHH
T ss_pred             -------HHEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf             -------0011001234432221335888648997688888799999748938993698998753199999999999996


Q ss_pred             HHCCCC
Q ss_conf             621366
Q gi|254780904|r  171 NSIVSS  176 (268)
Q Consensus       171 ~~~~~~  176 (268)
                      +.....
T Consensus       154 q~~~~~  159 (160)
T 3gyq_A          154 RNLAAN  159 (160)
T ss_dssp             HHSSCC
T ss_pred             HHHHHC
T ss_conf             256425