HHsearch alignment of GI: 254780904 and MMDB domain: 3ilk_A_1-174
>3ilk_A (A:1-174) Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-32 Score=223.29 Aligned_cols=162 Identities=31% Similarity=0.464 Sum_probs=136.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
..+.+++|||++|++|+|+|+|+|+|++||++++++++|. ++++++.+.++|+.+.+....+..........+.....
T Consensus 3 ~~~~~~~vvl~~v~~~~NiG~i~Rsa~~fG~~~i~~~~~~--~~~~~~~~~s~ga~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (174)
T 3ilk_A 3 AXLENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG 80 (174)
T ss_dssp CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE
T ss_pred CCHHCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCCHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 2333878998089898709999999997499889995899--99989988633412234317994206566665556666
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
+............. ............++++||||+|+.||++++++.||.+++|||.+.++|||||+|++|+|||++
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v~IP~~~~~~SLNvs~A~aI~l~e~~ 157 (174)
T 3ilk_A 81 TSARLRHLQNTLIE---PRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELR 157 (174)
T ss_dssp ECCCCGGGTTTEEC---HHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCC---CCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 66542034311014---420000001478866886066668998122201001354126898522538999999999999
Q ss_pred HHHCCCC
Q ss_conf 9621366
Q gi|254780904|r 170 ENSIVSS 176 (268)
Q Consensus 170 r~~~~~~ 176 (268)
++.....
T Consensus 158 ~q~~~~~ 164 (174)
T 3ilk_A 158 XAFLVQN 164 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 9764202