HHsearch results for GI: 254780904 and protein with PDBid: 1ipa_A
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=1e-32 Score=224.24 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=118.5
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCC-HHHHHHCCCC
Q ss_conf 321348968999428885479999999997199804980888899999999985310134442001377-8998412553
Q gi|254780904|r 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEAIADLHF 86 (268)
Q Consensus 8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~-~~~a~~~~~~ 86 (268)
......+.++||++++||+|+|+|+|+|++||++.+++.+ .++++++++.+.|+|+.+.+........ ..+......+
T Consensus 110 ~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~~-~~~~~~~~~~r~s~ga~~~~~~~~~~~~~~~~~~~~~~~ 188 (274)
T 1ipa_A 110 YRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-GVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNL 188 (274)
T ss_dssp CCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES-CCCTTCHHHHHHTTTGGGTSCEEEECHHHHHHHHHHTTC
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCCCCCCEECCCCCEEEEEEEEEECHHHHHHHHHHCCE
T ss_conf 4346897899996897862799999999974987788448-723346400003543168998886113778887651230
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
.+..+... ...........++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus 189 ~i~~~~~~-------------~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvsvA~~I~ly 255 (274)
T 1ipa_A 189 PLVATTPH-------------AEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 (274)
T ss_dssp CEEEECTT-------------CSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHH
T ss_pred EECCCCCC-------------CCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 00012333-------------34311001467773999916767889999974897999769999970139999999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999621366
Q gi|254780904|r 167 ECMENSIVSS 176 (268)
Q Consensus 167 El~r~~~~~~ 176 (268)
|++||.....
T Consensus 256 E~~Rqr~~~~ 265 (274)
T 1ipa_A 256 EALRQRLLRD 265 (274)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHH
T ss_conf 9998488765