HHsearch results for GI: 254780904 and protein with PDBid: 1ipa_A

>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00  E-value=1e-32  Score=224.24  Aligned_cols=155  Identities=16%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCC-HHHHHHCCCC
Q ss_conf             321348968999428885479999999997199804980888899999999985310134442001377-8998412553
Q gi|254780904|r    8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEAIADLHF   86 (268)
Q Consensus         8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~-~~~a~~~~~~   86 (268)
                      ......+.++||++++||+|+|+|+|+|++||++.+++.+ .++++++++.+.|+|+.+.+........ ..+......+
T Consensus       110 ~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~~-~~~~~~~~~~r~s~ga~~~~~~~~~~~~~~~~~~~~~~~  188 (274)
T 1ipa_A          110 YRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-GVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNL  188 (274)
T ss_dssp             CCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES-CCCTTCHHHHHHTTTGGGTSCEEEECHHHHHHHHHHTTC
T ss_pred             HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCCCCCCEECCCCCEEEEEEEEEECHHHHHHHHHHCCE
T ss_conf             4346897899996897862799999999974987788448-723346400003543168998886113778887651230


Q ss_pred             CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r   87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW  166 (268)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY  166 (268)
                      .+..+...             ...........++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus       189 ~i~~~~~~-------------~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvsvA~~I~ly  255 (274)
T 1ipa_A          189 PLVATTPH-------------AEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY  255 (274)
T ss_dssp             CEEEECTT-------------CSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHH
T ss_pred             EECCCCCC-------------CCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             00012333-------------34311001467773999916767889999974897999769999970139999999999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9999621366
Q gi|254780904|r  167 ECMENSIVSS  176 (268)
Q Consensus       167 El~r~~~~~~  176 (268)
                      |++||.....
T Consensus       256 E~~Rqr~~~~  265 (274)
T 1ipa_A          256 EALRQRLLRD  265 (274)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHHHH
T ss_conf             9998488765