HHsearch results for GI: 254780904 and protein with PDBid: 2i6d_A

>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00  E-value=7.3e-34  Score=231.52  Aligned_cols=150  Identities=19%  Similarity=0.180  Sum_probs=118.0

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----
Q ss_conf             1348968999428885479999999997199804980888899999999985310134442001377899841255----
Q gi|254780904|r   10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----   85 (268)
Q Consensus        10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~----   85 (268)
                      ....++++||+++|||||+|+|+|+|++||++.++++.++++++++++++.|+|+.+.+....+ .++.+++..+.    
T Consensus        99 ~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~~v~~~~~-~~~~~~l~~l~~~~~  177 (257)
T 2i6d_A           99 PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPL-KNTVDTLAYFRRQGI  177 (257)
T ss_dssp             CCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEEC-SCHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCEECCCCCC-CHHHHHHHHHHHCCC
T ss_conf             5668849999579884579999999998098602000145565776663211575011022333-125678999853683


Q ss_pred             CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC-----CCCCCCCHHHHHH
Q ss_conf             31012011223430341242035666553115881699994588842431000123222047-----6787341016889
Q gi|254780904|r   86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQA  160 (268)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IP-----t~~~~~SLNLS~A  160 (268)
                      .++++.....            .........+.++++||||+|++|||++.++.||..++||     |.+..+|||||+|
T Consensus       178 ~i~~~~~~~~------------~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g~veSLNva~A  245 (257)
T 2i6d_A          178 PVYGAFLDGQ------------SLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIA  245 (257)
T ss_dssp             CEEEEEEEEE------------ETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHH
T ss_pred             EEEEECCCCC------------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHH
T ss_conf             5998302455------------3100001267886599987876788999998488689989987788999873109999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999962
Q gi|254780904|r  161 VLLMVWECMENS  172 (268)
Q Consensus       161 vaIvlYEl~r~~  172 (268)
                      ++|+|||++||+
T Consensus       246 ~aI~lyE~~Rq~  257 (257)
T 2i6d_A          246 TAILCSEWRRRS  257 (257)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998569