HHsearch results for GI: 254780904 and protein with PDBid: 2i6d_A
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=7.3e-34 Score=231.52 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=118.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----
Q ss_conf 1348968999428885479999999997199804980888899999999985310134442001377899841255----
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH---- 85 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~---- 85 (268)
....++++||+++|||||+|+|+|+|++||++.++++.++++++++++++.|+|+.+.+....+ .++.+++..+.
T Consensus 99 ~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~~v~~~~~-~~~~~~l~~l~~~~~ 177 (257)
T 2i6d_A 99 PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPL-KNTVDTLAYFRRQGI 177 (257)
T ss_dssp CCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEEC-SCHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCEECCCCCC-CHHHHHHHHHHHCCC
T ss_conf 5668849999579884579999999998098602000145565776663211575011022333-125678999853683
Q ss_pred CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC-----CCCCCCCHHHHHH
Q ss_conf 31012011223430341242035666553115881699994588842431000123222047-----6787341016889
Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQA 160 (268)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IP-----t~~~~~SLNLS~A 160 (268)
.++++..... .........+.++++||||+|++|||++.++.||..++|| |.+..+|||||+|
T Consensus 178 ~i~~~~~~~~------------~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g~veSLNva~A 245 (257)
T 2i6d_A 178 PVYGAFLDGQ------------SLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIA 245 (257)
T ss_dssp CEEEEEEEEE------------ETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHH
T ss_pred EEEEECCCCC------------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHH
T ss_conf 5998302455------------3100001267886599987876788999998488689989987788999873109999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999962
Q gi|254780904|r 161 VLLMVWECMENS 172 (268)
Q Consensus 161 vaIvlYEl~r~~ 172 (268)
++|+|||++||+
T Consensus 246 ~aI~lyE~~Rq~ 257 (257)
T 2i6d_A 246 TAILCSEWRRRS 257 (257)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998569