HHsearch results for GI: 254780904 and protein with PDBid: 3ic6_A
>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=0 Score=308.41 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=175.8
Q ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC-------------------CCHHHHHHH
Q ss_conf 9752255321348968999428885479999999997199804980888899-------------------999999985
Q gi|254780904|r 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------------------PSEKARSSS 61 (268)
Q Consensus 1 ~t~~~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~-------------------~~~~a~~~a 61 (268)
|+..-+.+.+...++.|||++|++|+|||||+|+|++||+++|+||+|+|++ .++++++.|
T Consensus 4 ~~~~~p~~~~~l~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (223)
T 3ic6_A 4 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILA 83 (223)
T ss_dssp ---CCCCCCGGGGGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHH
T ss_pred CCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 32358897123448699991798877499999999974998799974676664210122223554323567658899986
Q ss_pred HHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 31013444200137789984125531012011223430341242035666553115881699994588842431000123
Q gi|254780904|r 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268)
+|+.+++..+.++.+++++++++.....++.+.........................+++|||||+|++||+++++++||
T Consensus 84 ~ga~~~l~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d 163 (223)
T 3ic6_A 84 SGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACN 163 (223)
T ss_dssp GGGHHHHHTCEEESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCS
T ss_pred HCCHHHHCCEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 36487628237861499987531211111111135544201321000145555304777179976666687978988630
Q ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 222047678734101688999999999996213665444333334688889999999999
Q gi|254780904|r 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 (268)
Q Consensus 142 ~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~ 201 (268)
.+++|||++.++|||||||++|+|||++|+....... ......+|++++++.||+||++
T Consensus 164 ~~v~IPm~~~~~SLNvS~A~aIvlyE~~rq~~~~~~~-~~~~~~~a~~~~~~~~~~~~e~ 222 (223)
T 3ic6_A 164 RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTH-LQQEDHAATHEQIKGMLAHMES 222 (223)
T ss_dssp EEECCCCCTTCCCCCHHHHHHHHHHHHHHTTTSCCCC-CCC--CCCCHHHHHHHHTTCCC
T ss_pred HCEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 0111158999973279999999999999842687655-6545789999999999999842