HHsearch results for GI: 254780904 and protein with PDBid: 3ic6_A

>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00  E-value=0  Score=308.41  Aligned_cols=200  Identities=28%  Similarity=0.387  Sum_probs=175.8

Q ss_pred             CCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC-------------------CCHHHHHHH
Q ss_conf             9752255321348968999428885479999999997199804980888899-------------------999999985
Q gi|254780904|r    1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------------------PSEKARSSS   61 (268)
Q Consensus         1 ~t~~~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~-------------------~~~~a~~~a   61 (268)
                      |+..-+.+.+...++.|||++|++|+|||||+|+|++||+++|+||+|+|++                   .++++++.|
T Consensus         4 ~~~~~p~~~~~l~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   83 (223)
T 3ic6_A            4 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILA   83 (223)
T ss_dssp             ---CCCCCCGGGGGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHH
T ss_pred             CCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             32358897123448699991798877499999999974998799974676664210122223554323567658899986


Q ss_pred             HHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             31013444200137789984125531012011223430341242035666553115881699994588842431000123
Q gi|254780904|r   62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN  141 (268)
Q Consensus        62 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd  141 (268)
                      +|+.+++..+.++.+++++++++.....++.+.........................+++|||||+|++||+++++++||
T Consensus        84 ~ga~~~l~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d  163 (223)
T 3ic6_A           84 SGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACN  163 (223)
T ss_dssp             GGGHHHHHTCEEESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCS
T ss_pred             HCCHHHHCCEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             36487628237861499987531211111111135544201321000145555304777179976666687978988630


Q ss_pred             CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             222047678734101688999999999996213665444333334688889999999999
Q gi|254780904|r  142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI  201 (268)
Q Consensus       142 ~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~  201 (268)
                      .+++|||++.++|||||||++|+|||++|+....... ......+|++++++.||+||++
T Consensus       164 ~~v~IPm~~~~~SLNvS~A~aIvlyE~~rq~~~~~~~-~~~~~~~a~~~~~~~~~~~~e~  222 (223)
T 3ic6_A          164 RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTH-LQQEDHAATHEQIKGMLAHMES  222 (223)
T ss_dssp             EEECCCCCTTCCCCCHHHHHHHHHHHHHHTTTSCCCC-CCC--CCCCHHHHHHHHTTCCC
T ss_pred             HCEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHC
T ss_conf             0111158999973279999999999999842687655-6545789999999999999842