HHsearch results for GI: 254780904 and protein with PDBid: 3ilk_A

>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00  E-value=0  Score=380.63  Aligned_cols=237  Identities=30%  Similarity=0.465  Sum_probs=208.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r   10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      +-.+++.||||+||+|||||||+|+|+|||+++|+||+|++  +++++.++|+|+.+++..+.++.+++++..++..+++
T Consensus         3 ~~~~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~~--~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~~~   80 (244)
T 3ilk_A            3 AMLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG   80 (244)
T ss_dssp             CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSC--CSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE
T ss_pred             CCHHCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC--CCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf             00539899994898867699999999980999799938999--8979999747541123757998406666666778889


Q ss_pred             EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r   90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM  169 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~  169 (268)
                      ++.+.+........+.+...   .....++++|||||+|++||++++++.||.+++|||++.|+||||||||+|+||||+
T Consensus        81 ~~~r~~~~~~~~~~~~~~~~---~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~  157 (244)
T 3ilk_A           81 TSARLRHLQNTLIEPRECAE---KVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR  157 (244)
T ss_dssp             ECCCCGGGTTTEECHHHHHH---HHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHH
T ss_conf             98764225644368787422---320368864886166668997687615560698558999832328999999999999


Q ss_pred             HHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             96213665---444333334688889999999999998728998754389999999998631699989999999999999
Q gi|254780904|r  170 ENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL  246 (268)
Q Consensus       170 r~~~~~~~---~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l  246 (268)
                      ++......   ........+|++++++.|++++.+.|+.+||+++    +.++++|||+|.|+.||++|+++||||++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~lr~~~~r~~lt~~E~~~L~Gi~~~l  233 (244)
T 3ilk_A          158 MAFLVQNNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAV  233 (244)
T ss_dssp             HHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHHHHTCCCS----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             987400445555432123567899999999999999986588782----8999999999973799999999999999999


Q ss_pred             HHHHCCCCC
Q ss_conf             984103421
Q gi|254780904|r  247 DKFSRQSSR  255 (268)
Q Consensus       247 ~~~~~~~~~  255 (268)
                      +|+++..++
T Consensus       234 ~k~~~~~~~  242 (244)
T 3ilk_A          234 EKRIDLTKE  242 (244)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHCCCCC
T ss_conf             987313225