HHsearch results for GI: 254780904 and protein with PDBid: 3ilk_A
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=380.63 Aligned_cols=237 Identities=30% Similarity=0.465 Sum_probs=208.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
+-.+++.||||+||+|||||||+|+|+|||+++|+||+|++ +++++.++|+|+.+++..+.++.+++++..++..+++
T Consensus 3 ~~~~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~~--~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (244)
T 3ilk_A 3 AMLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG 80 (244)
T ss_dssp CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSC--CSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE
T ss_pred CCHHCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC--CCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 00539899994898867699999999980999799938999--8979999747541123757998406666666778889
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
++.+.+........+.+... .....++++|||||+|++||++++++.||.+++|||++.|+||||||||+|+||||+
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~---~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~ 157 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAE---KVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 157 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHH---HHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 98764225644368787422---320368864886166668997687615560698558999832328999999999999
Q ss_pred HHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 96213665---444333334688889999999999998728998754389999999998631699989999999999999
Q gi|254780904|r 170 ENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 (268)
Q Consensus 170 r~~~~~~~---~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l 246 (268)
++...... ........+|++++++.|++++.+.|+.+||+++ +.++++|||+|.|+.||++|+++||||++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~lr~~~~r~~lt~~E~~~L~Gi~~~l 233 (244)
T 3ilk_A 158 MAFLVQNNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAV 233 (244)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHHHHTCCCS----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 987400445555432123567899999999999999986588782----8999999999973799999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 984103421
Q gi|254780904|r 247 DKFSRQSSR 255 (268)
Q Consensus 247 ~~~~~~~~~ 255 (268)
+|+++..++
T Consensus 234 ~k~~~~~~~ 242 (244)
T 3ilk_A 234 EKRIDLTKE 242 (244)
T ss_dssp HHHHHHHC-
T ss_pred HHHHCCCCC
T ss_conf 987313225