HHsearch results for GI: 254780904 and protein with PDBid: 3n4j_A
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=99.98 E-value=5.5e-32 Score=219.70 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=118.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 48968999428885479999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
+..+.|||++|++|+|||+|+|+|++||+ ++++|.|++..+..+....+.++.............+.............
T Consensus 2 ~~~l~ivL~~p~~P~NlGaI~Rta~afGv-~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 3n4j_A 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQP 80 (165)
T ss_dssp -CCEEEEEESCCCHHHHHHHHHHHHHHTC-EEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCC-CEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96369999689999819999999997699-78941686540251899988373365321121003888889998733564
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC--CEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123--2220476787341016889999999999
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd--~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
.. .. ................++++||||+|++|||+++++.|| .++.|||.+.++|||||+|++|+|||++
T Consensus 81 ~~------i~-~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~ 153 (165)
T 3n4j_A 81 AR------LF-ALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAW 153 (165)
T ss_dssp TT------EE-EECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred EE------EE-EECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHH
T ss_conf 27------88-631322103666325766169973566789999998588763998049999986589999999999999
Q ss_pred HHHCCCC
Q ss_conf 9621366
Q gi|254780904|r 170 ENSIVSS 176 (268)
Q Consensus 170 r~~~~~~ 176 (268)
||.+...
T Consensus 154 RQ~~~~g 160 (165)
T 3n4j_A 154 RQLGYPG 160 (165)
T ss_dssp HHHTCTT
T ss_pred HHCCCCC
T ss_conf 8049997