HHsearch results for GI: 254780904 and protein with PDBid: 3nk6_A

>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00  E-value=1.9e-33  Score=228.94  Aligned_cols=148  Identities=18%  Similarity=0.227  Sum_probs=117.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----C
Q ss_conf             489689994288854799999999971998049808888-99999999985310134442001377899841255----3
Q gi|254780904|r   12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----F   86 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~-~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~----~   86 (268)
                      ..+.++|||++|||||+|+|+|+|.+||++.++++.+.+ +++++++.+.|+|+.+.+...  +.++.+++..+.    .
T Consensus       117 ~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~RaS~Ga~~~~p~~--~~~~~~~~~~l~~~~~~  194 (277)
T 3nk6_A          117 RGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV--LADREEAVSFLRDNDIA  194 (277)
T ss_dssp             HCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEE--ECCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCEE--ECCCCHHHHHHHHCCCE
T ss_conf             4986999947887745899999999708857996257855234731243256633421202--20320346777635861


Q ss_pred             CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r   87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW  166 (268)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY  166 (268)
                      ++++..             .............++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus       195 i~~~~~-------------~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ly  261 (277)
T 3nk6_A          195 LMVLDT-------------DGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALH  261 (277)
T ss_dssp             EEEECT-------------TCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHH
T ss_pred             EEEEEE-------------CCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf             799984-------------3764400011478888999877667888999973894999729899972159999999999


Q ss_pred             HHHHHHCC
Q ss_conf             99996213
Q gi|254780904|r  167 ECMENSIV  174 (268)
Q Consensus       167 El~r~~~~  174 (268)
                      |+.|+...
T Consensus       262 E~~rq~~a  269 (277)
T 3nk6_A          262 ERSARNFA  269 (277)
T ss_dssp             HTHHHHHH
T ss_pred             HHHHHCCC
T ss_conf             99971313