HHsearch results for GI: 254780904 and protein with PDBid: 3nk6_A
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.9e-33 Score=228.94 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=117.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----C
Q ss_conf 489689994288854799999999971998049808888-99999999985310134442001377899841255----3
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----F 86 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~-~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~----~ 86 (268)
..+.++|||++|||||+|+|+|+|.+||++.++++.+.+ +++++++.+.|+|+.+.+... +.++.+++..+. .
T Consensus 117 ~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~RaS~Ga~~~~p~~--~~~~~~~~~~l~~~~~~ 194 (277)
T 3nk6_A 117 RGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV--LADREEAVSFLRDNDIA 194 (277)
T ss_dssp HCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEE--ECCHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCEE--ECCCCHHHHHHHHCCCE
T ss_conf 4986999947887745899999999708857996257855234731243256633421202--20320346777635861
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
++++.. .............++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus 195 i~~~~~-------------~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ly 261 (277)
T 3nk6_A 195 LMVLDT-------------DGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALH 261 (277)
T ss_dssp EEEECT-------------TCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHH
T ss_pred EEEEEE-------------CCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 799984-------------3764400011478888999877667888999973894999729899972159999999999
Q ss_pred HHHHHHCC
Q ss_conf 99996213
Q gi|254780904|r 167 ECMENSIV 174 (268)
Q Consensus 167 El~r~~~~ 174 (268)
|+.|+...
T Consensus 262 E~~rq~~a 269 (277)
T 3nk6_A 262 ERSARNFA 269 (277)
T ss_dssp HTHHHHHH
T ss_pred HHHHHCCC
T ss_conf 99971313