HHsearch results for GI: 254780904 and protein with PDBid: 3onp_A
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=0 Score=421.46 Aligned_cols=243 Identities=40% Similarity=0.597 Sum_probs=225.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
..|+||||+||+|+|||||+|+|+|||+++|+||+|+|+++++++.+.|+|+.+.+..+.++.+++++..++....+++.
T Consensus 3 ~~p~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~~~~~~~~~a~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (249)
T 3onp_A 3 IEPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTA 82 (249)
T ss_dssp CCCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCSEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHEECEEEEECCHHHHHHHHCCHHHHHH
T ss_conf 99889993899987499999999982899899918988999889998847873220211364459999763000132222
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001232220476787341016889999999999962
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268)
+.+........+.............++++|||||+|++||+++++++||++++|||++.|+||||||||+|+||||+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNls~AvaIvlyEl~r~~ 162 (249)
T 3onp_A 83 RGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQH 162 (249)
T ss_dssp SCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHHHHHC-
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHH
T ss_conf 31357864100113467778765047765999947877888788740251898348999886159999999999999984
Q ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 13665444-33333468888999999999999872899875438999999999863169998999999999999998410
Q gi|254780904|r 173 IVSSEKNV-KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 (268)
Q Consensus 173 ~~~~~~~~-~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~ 251 (268)
........ .....+|++++++.|++++.+.|+++|||.|++++++++.+|||||+|+.||++|+++|||++++++|+++
T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~l~~~~f~~~~~~~~~~~~~lr~l~~r~~l~~~E~~~L~Gi~~~i~~~l~ 242 (249)
T 3onp_A 163 DETPPEVIDMARVDFASGLEVEKLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLK 242 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 15787654310012110889999999999999976999984112799999999997379999999999999999999974
Q ss_pred CCCC
Q ss_conf 3421
Q gi|254780904|r 252 QSSR 255 (268)
Q Consensus 252 ~~~~ 255 (268)
+...
T Consensus 243 ~~~~ 246 (249)
T 3onp_A 243 QENL 246 (249)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 6576