Query gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 268 No_of_seqs 177 out of 3436 Neff 7.7 Searched_HMMs 23785 Date Tue May 31 22:38:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780904.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3onp_A TRNA/RRNA methyltransfe 100.0 0 0 421.5 14.0 243 13-255 3-246 (249) 2 3ilk_A Uncharacterized tRNA/RR 100.0 0 0 380.6 18.9 237 10-255 3-242 (244) 3 3ic6_A Putative methylase fami 100.0 0 0 308.4 11.7 200 1-201 4-222 (223) 4 3kty_A Probable methyltransfer 100.0 7.4E-37 3.1E-41 250.4 12.9 165 8-172 4-172 (173) 5 1x7o_A Avirb, rRNA methyltrans 100.0 1.7E-35 7.2E-40 241.8 13.2 167 5-177 117-283 (287) 6 1gz0_A Hypothetical tRNA/RRNA 100.0 1.6E-34 6.6E-39 235.7 12.8 155 7-172 98-252 (253) 7 1v2x_A TRNA (GM18) methyltrans 100.0 1.3E-34 5.6E-39 236.2 10.8 176 9-200 17-192 (194) 8 1zjr_A TRNA (guanosine-2'-O-)- 100.0 6.8E-34 2.8E-38 231.7 12.3 178 10-202 21-198 (211) 9 2i6d_A RNA methyltransferase, 100.0 7.3E-34 3.1E-38 231.5 11.7 150 10-172 99-257 (257) 10 3nk6_A 23S rRNA methyltransfer 100.0 1.9E-33 7.8E-38 228.9 12.7 148 12-174 117-269 (277) 11 3dcm_X AdoMet, uncharacterized 100.0 3E-34 1.3E-38 233.9 4.5 154 13-173 3-188 (192) 12 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 1E-32 4.4E-37 224.2 11.8 155 8-176 110-265 (274) 13 2ha8_A TAR (HIV-1) RNA loop bi 100.0 9E-33 3.8E-37 224.7 11.1 156 6-175 18-178 (184) 14 3n4j_A RNA methyltransferase; 100.0 5.5E-32 2.3E-36 219.7 12.5 157 12-176 2-160 (165) 15 3e5y_A TRMH family RNA methylt 100.0 9.1E-32 3.8E-36 218.3 10.6 152 13-175 4-157 (160) 16 2rgw_A Aspartate carbamoyltran 84.5 1.6 6.8E-05 21.7 5.2 79 10-91 147-226 (306) 17 1vhk_A Hypothetical protein YQ 78.6 3.1 0.00013 19.9 10.2 145 16-166 83-245 (268) 18 1pvv_A Otcase, ornithine carba 78.0 3.2 0.00014 19.8 8.3 78 9-89 150-229 (315) 19 3csu_A Protein (aspartate carb 77.9 3.3 0.00014 19.7 7.1 79 9-90 149-228 (310) 20 2egv_A UPF0088 protein AQ_165; 75.8 3.7 0.00016 19.4 9.0 146 10-168 66-226 (229) 21 1vhy_A Hypothetical protein HI 74.7 4 0.00017 19.2 9.3 143 16-169 82-239 (257) 22 2yy8_A ATRM56, UPF0106 protein 73.3 4.3 0.00018 19.0 8.0 124 31-173 21-150 (201) 23 2w37_A Ornithine carbamoyltran 70.4 5 0.00021 18.6 7.5 81 10-91 172-253 (359) 24 1pzg_A LDH, lactate dehydrogen 69.0 5.3 0.00022 18.4 6.5 82 12-96 7-91 (331) 25 1dxh_A Ornithine carbamoyltran 65.6 6.2 0.00026 18.0 6.5 78 12-91 153-232 (335) 26 1k3r_A Conserved protein MT000 61.2 5.2 0.00022 18.5 2.9 32 18-49 14-49 (268) 27 3dzb_A Prephenate dehydrogenas 54.6 9.7 0.00041 16.8 8.1 117 24-148 12-153 (317) 28 1pg5_A Aspartate carbamoyltran 54.5 9.7 0.00041 16.8 5.1 75 10-90 145-220 (299) 29 3kw2_A Probable R-RNA methyltr 52.2 11 0.00044 16.5 8.4 146 17-165 80-236 (257) 30 1v6z_A Hypothetical protein TT 50.6 11 0.00047 16.4 8.1 139 16-170 73-223 (228) 31 2i6u_A Otcase, ornithine carba 48.8 12 0.0005 16.2 8.4 80 10-91 144-225 (307) 32 1ml4_A Aspartate transcarbamoy 46.8 13 0.00054 16.0 6.1 78 10-91 151-229 (308) 33 3ohw_B Phycobilisome LCM core- 43.8 14 0.0006 15.7 4.1 43 202-244 75-117 (148) 34 1hyh_A L-hicdh, L-2-hydroxyiso 41.6 15 0.00065 15.5 3.6 72 17-95 4-81 (309) 35 2o38_A Hypothetical protein; a 41.1 15 0.00063 15.6 2.6 44 202-245 23-68 (120) 36 1duv_G Octase-1, ornithine tra 40.8 16 0.00067 15.4 7.1 78 12-91 153-232 (333) 37 2qwv_A UPF0217 protein VC_A105 40.8 16 0.00067 15.4 3.8 53 114-171 148-204 (208) 38 2xed_A Putative maleate isomer 40.7 10 0.00043 16.6 1.7 31 27-57 133-163 (273) 39 1ur5_A Malate dehydrogenase; o 40.0 16 0.00069 15.3 4.0 72 17-95 5-82 (309) 40 3gvi_A Malate dehydrogenase; N 39.4 17 0.0007 15.3 4.9 77 12-95 5-87 (324) 41 2dgd_A 223AA long hypothetical 35.1 14 0.0006 15.7 1.7 22 29-50 97-118 (223) 42 3d0o_A L-LDH 1, L-lactate dehy 34.5 20 0.00084 14.8 4.2 78 12-96 4-87 (317) 43 1vlv_A Otcase, ornithine carba 33.8 20 0.00086 14.7 7.7 79 10-89 163-242 (325) 44 2o3a_A UPF0106 protein AF_0751 33.3 21 0.00088 14.7 8.6 113 31-169 24-143 (178) 45 3d6n_B Aspartate carbamoyltran 32.4 22 0.00091 14.6 7.2 15 28-42 79-93 (291) 46 1z85_A Hypothetical protein TM 32.2 22 0.00091 14.6 7.1 129 18-166 89-225 (234) 47 3ggo_A Prephenate dehydrogenas 32.0 12 0.00049 16.2 0.9 34 24-62 40-75 (314) 48 1gdh_A D-glycerate dehydrogena 32.0 22 0.00092 14.5 4.0 24 25-49 154-178 (320) 49 3fi9_A Malate dehydrogenase; s 29.9 24 0.001 14.3 3.1 67 25-95 17-88 (343) 50 2d4a_B Malate dehydrogenase; a 29.0 25 0.001 14.2 2.2 67 25-95 7-79 (308) 51 1y81_A Conserved hypothetical 27.7 26 0.0011 14.1 5.1 61 12-88 12-74 (138) 52 2hjr_A Malate dehydrogenase; m 27.7 26 0.0011 14.1 3.7 74 16-96 16-95 (328) 53 3grf_A Ornithine carbamoyltran 27.7 26 0.0011 14.1 5.7 80 11-91 158-242 (328) 54 3p7m_A Malate dehydrogenase; p 26.3 27 0.0012 13.9 4.6 76 13-95 4-85 (321) 55 3ixl_A Amdase, arylmalonate de 25.9 28 0.0012 13.9 1.9 31 27-57 104-134 (240) 56 1qp8_A Formate dehydrogenase; 24.7 29 0.0012 13.7 5.2 52 24-92 131-183 (303) 57 3jtm_A Formate dehydrogenase, 24.4 30 0.0012 13.7 4.3 64 16-93 166-230 (351) 58 1t2d_A LDH-P, L-lactate dehydr 24.1 30 0.0013 13.7 4.6 73 16-95 6-84 (322) 59 3osj_A Phycobilisome LCM core- 23.9 30 0.0013 13.6 6.0 43 202-244 74-116 (147) 60 3ktd_A Prephenate dehydrogenas 22.3 33 0.0014 13.4 10.5 67 10-88 6-73 (341) 61 2ky4_A Phycobilisome linker po 21.8 33 0.0014 13.4 5.9 87 158-244 13-108 (149) 62 1w1w_A Structural maintenance 20.9 35 0.0015 13.3 3.3 12 16-27 28-39 (430) 63 1oth_A Protein (ornithine tran 20.1 36 0.0015 13.2 6.4 77 10-89 151-229 (321) No 1 >3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Probab=100.00 E-value=0 Score=421.46 Aligned_cols=243 Identities=40% Similarity=0.597 Sum_probs=225.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201 Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268) ..|+||||+||+|+|||||+|+|+|||+++|+||+|+|+++++++.+.|+|+.+.+..+.++.+++++..++....+++. T Consensus 3 ~~p~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~~~~~~~~~a~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (249) T 3onp_A 3 IEPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTA 82 (249) T ss_dssp CCCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCSEEEEEES T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHEECEEEEECCHHHHHHHHCCHHHHHH T ss_conf 99889993899987499999999982899899918988999889998847873220211364459999763000132222 Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 12234303412420356665531158816999945888424310001232220476787341016889999999999962 Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268) Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268) +.+........+.............++++|||||+|++||+++++++||++++|||++.|+||||||||+|+||||+++. T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNls~AvaIvlyEl~r~~ 162 (249) T 3onp_A 83 RGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQH 162 (249) T ss_dssp SCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHHHHHC- T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHH T ss_conf 31357864100113467778765047765999947877888788740251898348999886159999999999999984 Q ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 13665444-33333468888999999999999872899875438999999999863169998999999999999998410 Q gi|254780904|r 173 IVSSEKNV-KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 (268) Q Consensus 173 ~~~~~~~~-~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~ 251 (268) ........ .....+|++++++.|++++.+.|+++|||.|++++++++.+|||||+|+.||++|+++|||++++++|+++ T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~l~~~~f~~~~~~~~~~~~~lr~l~~r~~l~~~E~~~L~Gi~~~i~~~l~ 242 (249) T 3onp_A 163 DETPPEVIDMARVDFASGLEVEKLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLK 242 (249) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 15787654310012110889999999999999976999984112799999999997379999999999999999999974 Q ss_pred CCCC Q ss_conf 3421 Q gi|254780904|r 252 QSSR 255 (268) Q Consensus 252 ~~~~ 255 (268) +... T Consensus 243 ~~~~ 246 (249) T 3onp_A 243 QENL 246 (249) T ss_dssp ---- T ss_pred CCCC T ss_conf 6576 No 2 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} Probab=100.00 E-value=0 Score=380.63 Aligned_cols=237 Identities=30% Similarity=0.465 Sum_probs=208.2 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) +-.+++.||||+||+|||||||+|+|+|||+++|+||+|++ +++++.++|+|+.+++..+.++.+++++..++..+++ T Consensus 3 ~~~~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~~--~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (244) T 3ilk_A 3 AMLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG 80 (244) T ss_dssp CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSC--CSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE T ss_pred CCHHCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC--CCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 00539899994898867699999999980999799938999--8979999747541123757998406666666778889 Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999 Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268) ++.+.+........+.+... .....++++|||||+|++||++++++.||.+++|||++.|+||||||||+|+||||+ T Consensus 81 ~~~r~~~~~~~~~~~~~~~~---~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~ 157 (244) T 3ilk_A 81 TSARLRHLQNTLIEPRECAE---KVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 157 (244) T ss_dssp ECCCCGGGTTTEECHHHHHH---HHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHH T ss_conf 98764225644368787422---320368864886166668997687615560698558999832328999999999999 Q ss_pred HHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 96213665---444333334688889999999999998728998754389999999998631699989999999999999 Q gi|254780904|r 170 ENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 (268) Q Consensus 170 r~~~~~~~---~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l 246 (268) ++...... ........+|++++++.|++++.+.|+.+||+++ +.++++|||+|.|+.||++|+++||||++++ T Consensus 158 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~lr~~~~r~~lt~~E~~~L~Gi~~~l 233 (244) T 3ilk_A 158 MAFLVQNNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAV 233 (244) T ss_dssp HHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHHHHTCCCS----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 987400445555432123567899999999999999986588782----8999999999973799999999999999999 Q ss_pred HHHHCCCCC Q ss_conf 984103421 Q gi|254780904|r 247 DKFSRQSSR 255 (268) Q Consensus 247 ~~~~~~~~~ 255 (268) +|+++..++ T Consensus 234 ~k~~~~~~~ 242 (244) T 3ilk_A 234 EKRIDLTKE 242 (244) T ss_dssp HHHHHHHC- T ss_pred HHHHCCCCC T ss_conf 987313225 No 3 >3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} Probab=100.00 E-value=0 Score=308.41 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=175.8 Q ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC-------------------CCHHHHHHH Q ss_conf 9752255321348968999428885479999999997199804980888899-------------------999999985 Q gi|254780904|r 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------------------PSEKARSSS 61 (268) Q Consensus 1 ~t~~~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~-------------------~~~~a~~~a 61 (268) |+..-+.+.+...++.|||++|++|+|||||+|+|++||+++|+||+|+|++ .++++++.| T Consensus 4 ~~~~~p~~~~~l~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (223) T 3ic6_A 4 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILA 83 (223) T ss_dssp ---CCCCCCGGGGGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHH T ss_pred CCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 32358897123448699991798877499999999974998799974676664210122223554323567658899986 Q ss_pred HHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC Q ss_conf 31013444200137789984125531012011223430341242035666553115881699994588842431000123 Q gi|254780904|r 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268) Q Consensus 62 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268) +|+.+++..+.++.+++++++++.....++.+.........................+++|||||+|++||+++++++|| T Consensus 84 ~ga~~~l~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d 163 (223) T 3ic6_A 84 SGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACN 163 (223) T ss_dssp GGGHHHHHTCEEESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCS T ss_pred HCCHHHHCCEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHH T ss_conf 36487628237861499987531211111111135544201321000145555304777179976666687978988630 Q ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 222047678734101688999999999996213665444333334688889999999999 Q gi|254780904|r 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 (268) Q Consensus 142 ~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~ 201 (268) .+++|||++.++|||||||++|+|||++|+....... ......+|++++++.||+||++ T Consensus 164 ~~v~IPm~~~~~SLNvS~A~aIvlyE~~rq~~~~~~~-~~~~~~~a~~~~~~~~~~~~e~ 222 (223) T 3ic6_A 164 RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTH-LQQEDHAATHEQIKGMLAHMES 222 (223) T ss_dssp EEECCCCCTTCCCCCHHHHHHHHHHHHHHTTTSCCCC-CCC--CCCCHHHHHHHHTTCCC T ss_pred HCEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHC T ss_conf 0111158999973279999999999999842687655-6545789999999999999842 No 4 >3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} Probab=100.00 E-value=7.4e-37 Score=250.35 Aligned_cols=165 Identities=29% Similarity=0.359 Sum_probs=140.5 Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC--CHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC Q ss_conf 3213489689994288854799999999971998049808888999--99999985310134442001377899841255 Q gi|254780904|r 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 (268) Q Consensus 8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~--~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~ 85 (268) |....+++.|||++||+|+|+|+|+|+|++||+++++|++|++++. ++++.+.+.|+.+.......+..++.+..... T Consensus 4 ~~~~~~~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (173) T 3kty_A 4 MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT 83 (173) T ss_dssp HHHHHTTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS T ss_pred HHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCHHHHHHHHCC T ss_conf 12413865999927989874999999999829988999899777778878898733876045444210332999985202 Q ss_pred CCEEEECCCCCCCEEEECCCC--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH Q ss_conf 310120112234303412420--356665531158816999945888424310001232220476787341016889999 Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268) ....+....+........... ............++++||||+|++||++++++.||++++|||.+.++|||||+|++| T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~~~~~SLNvs~AaaI 163 (173) T 3kty_A 84 LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQL 163 (173) T ss_dssp EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHH T ss_pred CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHH T ss_conf 22100000122334323223433222333332146762899777567889899974797999418989982678999999 Q ss_pred HHHHHHHHH Q ss_conf 999999962 Q gi|254780904|r 164 MVWECMENS 172 (268) Q Consensus 164 vlYEl~r~~ 172 (268) +||||+|+. T Consensus 164 ~lyElrra~ 172 (173) T 3kty_A 164 AAWELRYAL 172 (173) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999975 No 5 >1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Probab=100.00 E-value=1.7e-35 Score=241.77 Aligned_cols=167 Identities=18% Similarity=0.121 Sum_probs=125.8 Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCC Q ss_conf 25532134896899942888547999999999719980498088889999999998531013444200137789984125 Q gi|254780904|r 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 (268) Q Consensus 5 ~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~ 84 (268) +..+......++|||++++||||+|+|+|+|.+||++.+++.+++++++++++++.++|+.+.+....+.+ +.++...+ T Consensus 117 l~~l~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~~~~~~~~~ras~Ga~~~~~~~~~~~-~~~~~~~l 195 (287) T 1x7o_A 117 LDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPS-PGEVMDWV 195 (287) T ss_dssp GGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESS-HHHHHHHH T ss_pred HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCHHHHCCEEEEEH-HHHHHHHH T ss_conf 65740458977999966877655899999888559876999730344444300000102132110489810-46777765 Q ss_pred CCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH Q ss_conf 53101201122343034124203566655311588169999458884243100012322204767873410168899999 Q gi|254780904|r 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 (268) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIv 164 (268) .... ..................+......++++||||+|++|||++.++.||+.++|||.+.++|||||+|++|+ T Consensus 196 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ 270 (287) T 1x7o_A 196 EARR-----AAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAI 270 (287) T ss_dssp HHHH-----HHTCCCEEEEECTTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHH T ss_pred HHHH-----CCCCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEHHHHHHHHH T ss_conf 5554-----04875687412000243211120368629998888878899999858989998999999712299999999 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999996213665 Q gi|254780904|r 165 VWECMENSIVSSE 177 (268) Q Consensus 165 lYEl~r~~~~~~~ 177 (268) |||++||+..... T Consensus 271 lyE~~RqR~~~~~ 283 (287) T 1x7o_A 271 LYEAVRQRISGRT 283 (287) T ss_dssp HHHHHHHHSSCCC T ss_pred HHHHHHHHHCCCC T ss_conf 9999987853899 No 6 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Probab=100.00 E-value=1.6e-34 Score=235.69 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=125.9 Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCC Q ss_conf 53213489689994288854799999999971998049808888999999999853101344420013778998412553 Q gi|254780904|r 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 (268) Q Consensus 7 ~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~ 86 (268) .+.+.++..+|||++++||+|+|+|+|+|.+||++.++++.+.++++++++.+.|+|+.+.+.... +.++++++..+.. T Consensus 98 ~~~~~~~~~~vvLd~i~dp~NlGaiiRta~afG~~~vil~~~~~~~~~~~~~r~s~G~~~~~~~~~-~~~l~~~l~~l~~ 176 (253) T 1gz0_A 98 LIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIR-VTNLARTMRMLQE 176 (253) T ss_dssp HHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEE-ESCHHHHHHHHHH T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCHHCCCCCC-CCCHHHHHHHHHH T ss_conf 984668986999955788507999999999729986830467667652422343258611289501-6999999998643 Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999 Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268) . ........ .............++++||||+|++|||++.++.||.+++|||.+.++|||||+|++|+|| T Consensus 177 ~---------~~~~~~~~-~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNva~A~aI~ly 246 (253) T 1gz0_A 177 E---------NIWIVGTA-GEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 246 (253) T ss_dssp T---------TCEEEEEC-TTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHH T ss_pred C---------CCCCCCCC-CCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 0---------12221223-2345531121047976999878777889999985998999789899950619999999999 Q ss_pred HHHHHH Q ss_conf 999962 Q gi|254780904|r 167 ECMENS 172 (268) Q Consensus 167 El~r~~ 172 (268) |++||. T Consensus 247 e~~rqr 252 (253) T 1gz0_A 247 EAVRQR 252 (253) T ss_dssp HHHHHT T ss_pred HHHHCC T ss_conf 999764 No 7 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Probab=100.00 E-value=1.3e-34 Score=236.17 Aligned_cols=176 Identities=18% Similarity=0.262 Sum_probs=124.8 Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ...+..++|||+++++|+|+|+|+|+|++||+.++++++|.+++++.+ .++++........++.++.+++..+.. T Consensus 17 ~~~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lk~-- 91 (194) T 1v2x_A 17 RRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN---ETSGGSHKWVYLRVHPDLHEAFRFLKE-- 91 (194) T ss_dssp TTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC---SSCSSGGGTSEEEEESSHHHHHHHHHH-- T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHH---HHCCCCCCEEEEEEECCHHHHHHHHHH-- T ss_conf 568999899996798846599999999974996430358866771344---310344312469995589999999997-- Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999 Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268) .......................++++||||+|++||++++++.||.+|+|||.+.++|||||+|++|+|||+ T Consensus 92 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~ 164 (194) T 1v2x_A 92 -------RGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEA 164 (194) T ss_dssp -------TTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHH T ss_pred -------CCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHH T ss_conf -------5982542012222454011026888289976767889999998589799958999986326999999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99621366544433333468888999999999 Q gi|254780904|r 169 MENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 (268) Q Consensus 169 ~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~ 200 (268) +||.....-... +..+.++...++.+|. T Consensus 165 ~Rq~~~~g~~~~----~~~~~~~~~~~l~~~~ 192 (194) T 1v2x_A 165 QRQRLKAGLYDR----PRLDPELYQKVLADWL 192 (194) T ss_dssp HHHHHHHTGGGS----CCSCHHHHHHHHHHC- T ss_pred HHHHHHCCCCCC----CCCCHHHHHHHHHHHH T ss_conf 997764579888----7899999999999997 No 8 >1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Probab=100.00 E-value=6.8e-34 Score=231.71 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=128.8 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) ..+...+|||+++++|+|+|+|+|+|++||++.+++++|.+.. ++...+.++|+...+....+. ++.+++..+... T Consensus 21 ~~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~-~~~~~~~s~gs~~~~~~~~~~-~~~~~l~~~~~~-- 96 (211) T 1zjr_A 21 KRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVD-NPVQKLLEFKNR-- 96 (211) T ss_dssp TCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECS-CHHHHHHHHHHT-- T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHC-- T ss_conf 4899989999589884379999999998589889994898886-277888852441035799967-889998765404-- Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999 Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268) ......................++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+. T Consensus 97 -------~~~i~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~ 169 (211) T 1zjr_A 97 -------GFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQ 169 (211) T ss_dssp -------TCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHH T ss_pred -------CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHH T ss_conf -------8448874033333222124566306999767667899999985798999779999970049999999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 962136654443333346888899999999999 Q gi|254780904|r 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 (268) Q Consensus 170 r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~ 202 (268) ||.....-.. .+..+++|.+.++..|..- T Consensus 170 Rqr~~~~~~~----~~~l~~~e~~~ll~~~~~~ 198 (211) T 1zjr_A 170 RQREEKGMYS----RPSLSEEEIQKILKKWAYE 198 (211) T ss_dssp HHHHHTTTTS----SCSSCHHHHHHHHHHHHHH T ss_pred HHHHHCCCCC----CCCCCHHHHHHHHHHHCCH T ss_conf 8687458988----8897999999999976048 No 9 >2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} Probab=100.00 E-value=7.3e-34 Score=231.52 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=118.0 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC---- Q ss_conf 1348968999428885479999999997199804980888899999999985310134442001377899841255---- Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH---- 85 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~---- 85 (268) ....++++||+++|||||+|+|+|+|++||++.++++.++++++++++++.|+|+.+.+....+ .++.+++..+. T Consensus 99 ~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~~v~~~~~-~~~~~~l~~l~~~~~ 177 (257) T 2i6d_A 99 PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPL-KNTVDTLAYFRRQGI 177 (257) T ss_dssp CCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEEC-SCHHHHHHHHHHTTC T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCEECCCCCC-CHHHHHHHHHHHCCC T ss_conf 5668849999579884579999999998098602000145565776663211575011022333-125678999853683 Q ss_pred CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC-----CCCCCCCHHHHHH Q ss_conf 31012011223430341242035666553115881699994588842431000123222047-----6787341016889 Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQA 160 (268) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IP-----t~~~~~SLNLS~A 160 (268) .++++..... .........+.++++||||+|++|||++.++.||..++|| |.+..+|||||+| T Consensus 178 ~i~~~~~~~~------------~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g~veSLNva~A 245 (257) T 2i6d_A 178 PVYGAFLDGQ------------SLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIA 245 (257) T ss_dssp CEEEEEEEEE------------ETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHH T ss_pred EEEEECCCCC------------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHH T ss_conf 5998302455------------3100001267886599987876788999998488689989987788999873109999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999962 Q gi|254780904|r 161 VLLMVWECMENS 172 (268) Q Consensus 161 vaIvlYEl~r~~ 172 (268) ++|+|||++||+ T Consensus 246 ~aI~lyE~~Rq~ 257 (257) T 2i6d_A 246 TAILCSEWRRRS 257 (257) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHHCC T ss_conf 999999998569 No 10 >3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Probab=100.00 E-value=1.9e-33 Score=228.94 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=117.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----C Q ss_conf 489689994288854799999999971998049808888-99999999985310134442001377899841255----3 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----F 86 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~-~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~----~ 86 (268) ..+.++|||++|||||+|+|+|+|.+||++.++++.+.+ +++++++.+.|+|+.+.+... +.++.+++..+. . T Consensus 117 ~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~RaS~Ga~~~~p~~--~~~~~~~~~~l~~~~~~ 194 (277) T 3nk6_A 117 RGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV--LADREEAVSFLRDNDIA 194 (277) T ss_dssp HCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEE--ECCHHHHHHHHHHTTCC T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCEE--ECCCCHHHHHHHHCCCE T ss_conf 4986999947887745899999999708857996257855234731243256633421202--20320346777635861 Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999 Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268) ++++.. .............++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+|| T Consensus 195 i~~~~~-------------~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ly 261 (277) T 3nk6_A 195 LMVLDT-------------DGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALH 261 (277) T ss_dssp EEEECT-------------TCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHH T ss_pred EEEEEE-------------CCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHH T ss_conf 799984-------------3764400011478888999877667888999973894999729899972159999999999 Q ss_pred HHHHHHCC Q ss_conf 99996213 Q gi|254780904|r 167 ECMENSIV 174 (268) Q Consensus 167 El~r~~~~ 174 (268) |+.|+... T Consensus 262 E~~rq~~a 269 (277) T 3nk6_A 262 ERSARNFA 269 (277) T ss_dssp HTHHHHHH T ss_pred HHHHHCCC T ss_conf 99971313 No 11 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Probab=100.00 E-value=3e-34 Score=233.94 Aligned_cols=154 Identities=19% Similarity=0.367 Sum_probs=124.7 Q ss_pred CCCEEEEEC-CCC--C----------CHHHHHHHHHHHCCCCEEEECCCCCC-----------CCCHHHHHHHHHCCCCC Q ss_conf 896899942-888--5----------47999999999719980498088889-----------99999999853101344 Q gi|254780904|r 13 KGPVIILVD-PQL--G----------ENIGMVARAMWNFNLTQLRLVNPRDG-----------WPSEKARSSSANADCVI 68 (268) Q Consensus 13 ~~~~vVLv~-p~~--p----------~NiGaiaRa~~~fG~~~L~lv~P~~~-----------~~~~~a~~~a~~a~~~~ 68 (268) ++.-|+||+ |.. + .|||.|||+|+|||+++|+||+|+++ |++.++.+.+.++.+++ T Consensus 3 ~~~~~~Lvh~Pv~~~~g~~~~t~~tnldihdIARamkn~Gl~~l~lV~P~~~q~~l~~~~~~~W~~~~a~~~a~~a~dvL 82 (192) T 3dcm_X 3 EKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESL 82 (192) T ss_dssp TSEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHH T ss_pred CCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH T ss_conf 65699997040037788788640446547999999986799727996762677888988875077704555088989998 Q ss_pred CCHHCCCCHHHHHHCCC-------CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC Q ss_conf 42001377899841255-------31012011223430341242035666553115881699994588842431000123 Q gi|254780904|r 69 DSVRVFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268) Q Consensus 69 ~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268) +++++++++++|+++|. .+++|+.+.+.. ...+.+..... ....++++|||| |++||+||++++|| T Consensus 83 ~~akV~~sLeeAl~d~~~~~g~s~~vvaTsar~r~~---~~~~~e~~~~l---~~~~~~valvFG-E~~GLtneeL~~cd 155 (192) T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKREN---DISFEEGRRII---IETEKPVLILLG-TGWGLPDEILEISD 155 (192) T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSS---CBCHHHHHHHH---HHCCSCEEEEEC-CTTCCCHHHHTTCS T ss_pred HHCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCCHHHHHHHH---HHCCCCEEEEEC-CCCCCCHHHHHHCC T ss_conf 218786889999987887528862686045665789---98999999998---733881899934-77799999998539 Q ss_pred CEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 2220-4767873410168899999999999621 Q gi|254780904|r 142 AIIS-FPVNPLFPSLNISQAVLLMVWECMENSI 173 (268) Q Consensus 142 ~~v~-IPt~~~~~SLNLS~AvaIvlYEl~r~~~ 173 (268) +++. ||++++|+||||||||+|+||+++.... T Consensus 156 ~iL~~Ip~~~~y~sLNvs~AvaIildrl~g~~~ 188 (192) T 3dcm_X 156 YVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY 188 (192) T ss_dssp EEBCCTTTTSSCCCCCHHHHHHHHHHHHTTTCC T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 778635799999830799999999999858301 No 12 >1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Probab=100.00 E-value=1e-32 Score=224.24 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=118.5 Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCC-HHHHHHCCCC Q ss_conf 321348968999428885479999999997199804980888899999999985310134442001377-8998412553 Q gi|254780904|r 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEAIADLHF 86 (268) Q Consensus 8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~-~~~a~~~~~~ 86 (268) ......+.++||++++||+|+|+|+|+|++||++.+++.+ .++++++++.+.|+|+.+.+........ ..+......+ T Consensus 110 ~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~~-~~~~~~~~~~r~s~ga~~~~~~~~~~~~~~~~~~~~~~~ 188 (274) T 1ipa_A 110 YRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-GVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNL 188 (274) T ss_dssp CCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES-CCCTTCHHHHHHTTTGGGTSCEEEECHHHHHHHHHHTTC T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCCCCCCEECCCCCEEEEEEEEEECHHHHHHHHHHCCE T ss_conf 4346897899996897862799999999974987788448-723346400003543168998886113778887651230 Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999 Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268) .+..+... ...........++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+|| T Consensus 189 ~i~~~~~~-------------~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvsvA~~I~ly 255 (274) T 1ipa_A 189 PLVATTPH-------------AEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 (274) T ss_dssp CEEEECTT-------------CSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHH T ss_pred EECCCCCC-------------CCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 00012333-------------34311001467773999916767889999974897999769999970139999999999 Q ss_pred HHHHHHCCCC Q ss_conf 9999621366 Q gi|254780904|r 167 ECMENSIVSS 176 (268) Q Consensus 167 El~r~~~~~~ 176 (268) |++||..... T Consensus 256 E~~Rqr~~~~ 265 (274) T 1ipa_A 256 EALRQRLLRD 265 (274) T ss_dssp HHHHHHTC-- T ss_pred HHHHHHHHHH T ss_conf 9998488765 No 13 >2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Probab=100.00 E-value=9e-33 Score=224.66 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=120.5 Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHC-CCCHHHHHHCC Q ss_conf 55321348968999428885479999999997199804980888899999999985310134442001-37789984125 Q gi|254780904|r 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADL 84 (268) Q Consensus 6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~-~~~~~~a~~~~ 84 (268) ..+......++|||+++++|+|+|+|+|+|++||++.+ ++.|.++++++.+.+.++|+.+.+....+ +.++.+++... T Consensus 18 ~~l~~~~~~l~vvld~i~dP~NlG~IiRta~afGv~~v-iv~~~~~~~~~~~~~~s~g~~~~i~~~~~~~~~~~~~l~~~ 96 (184) T 2ha8_A 18 ARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVL-VVGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQK 96 (184) T ss_dssp --CCCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEE-EESCGGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHH T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE-ECCCCCCCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHH T ss_conf 98356679879998178880379999999998199779-50764456874777640553102021134514689999998 Q ss_pred ----CCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH Q ss_conf ----5310120112234303412420356665531158816999945888424310001232220476787341016889 Q gi|254780904|r 85 ----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268) Q Consensus 85 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268) ..+++++.... ...+......++++||||+|++|||+++++.||.+++|||.+.++|||||+| T Consensus 97 k~~g~~vv~~~~~~~-------------~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNvs~A 163 (184) T 2ha8_A 97 KTEGYTIIGVEQTAK-------------SLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVS 163 (184) T ss_dssp HHTTCEEEEECCCTT-------------CEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHH T ss_pred HHCCCEEEEECCCCC-------------CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHH T ss_conf 755968987313245-------------5333211146885688676557889999985897999729699970259999 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999962136 Q gi|254780904|r 161 VLLMVWECMENSIVS 175 (268) Q Consensus 161 vaIvlYEl~r~~~~~ 175 (268) ++|+|||++|+.... T Consensus 164 ~aI~lye~~rq~~~~ 178 (184) T 2ha8_A 164 GALLIWEYTRQQLLS 178 (184) T ss_dssp HHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999834300 No 14 >3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A* Probab=99.98 E-value=5.5e-32 Score=219.70 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=118.9 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE Q ss_conf 48968999428885479999999997199804980888899999999985310134442001377899841255310120 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268) +..+.|||++|++|+|||+|+|+|++||+ ++++|.|++..+..+....+.++.............+............. T Consensus 2 ~~~l~ivL~~p~~P~NlGaI~Rta~afGv-~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165) T 3n4j_A 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQP 80 (165) T ss_dssp -CCEEEEEESCCCHHHHHHHHHHHHHHTC-EEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSC T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCC-CEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 96369999689999819999999997699-78941686540251899988373365321121003888889998733564 Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC--CEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 11223430341242035666553115881699994588842431000123--2220476787341016889999999999 Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 (268) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd--~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268) .. .. ................++++||||+|++|||+++++.|| .++.|||.+.++|||||+|++|+|||++ T Consensus 81 ~~------i~-~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~ 153 (165) T 3n4j_A 81 AR------LF-ALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAW 153 (165) T ss_dssp TT------EE-EECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHH T ss_pred EE------EE-EECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHH T ss_conf 27------88-631322103666325766169973566789999998588763998049999986589999999999999 Q ss_pred HHHCCCC Q ss_conf 9621366 Q gi|254780904|r 170 ENSIVSS 176 (268) Q Consensus 170 r~~~~~~ 176 (268) ||.+... T Consensus 154 RQ~~~~g 160 (165) T 3n4j_A 154 RQLGYPG 160 (165) T ss_dssp HHHTCTT T ss_pred HHCCCCC T ss_conf 8049997 No 15 >3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Probab=99.97 E-value=9.1e-32 Score=218.30 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=107.6 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201 Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268) ..+.|||++|++|+|||+|+|+|++||++.++++.+.+++.+.+..+.+++...... .......++.......... T Consensus 4 ~~~~ivL~~p~~P~NiGaI~Rta~afGi~~viv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 79 (160) T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQ-MRVHRDWDAFVAAEAPDPA--- 79 (160) T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHT-CEEESSHHHHHHHHCCCGG--- T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE-EEEECCHHHHHHHHHCCCC--- T ss_conf 757999948999983999999999849957852699864026899987416258764-5663218889988750583--- Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC--CCCEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 12234303412420356665531158816999945888424310001--2322204767873410168899999999999 Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268) Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~--cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268) ....................+++||||+|++|||+++++. ||++++|||.+.++|||||+|++|+|||++| T Consensus 80 -------~~~~~~~~~~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~~~~~SLNvsvAaaI~lyE~~R 152 (160) T 3e5y_A 80 -------RMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWR 152 (160) T ss_dssp -------GEEEECSTTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHH T ss_pred -------EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHH T ss_conf -------6999730123322112456523999804778899899986303232334799998716699999999999997 Q ss_pred HHCCC Q ss_conf 62136 Q gi|254780904|r 171 NSIVS 175 (268) Q Consensus 171 ~~~~~ 175 (268) |.... T Consensus 153 q~~~~ 157 (160) T 3e5y_A 153 QAGFE 157 (160) T ss_dssp HTTTT T ss_pred CCCCC T ss_conf 61899 No 16 >2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, pyrimidine biosynthesis, thermostability; 2.80A {Methanococcus jannaschii} PDB: 3e2p_A Probab=84.54 E-value=1.6 Score=21.68 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=48.4 Q ss_pred CCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 13489689994288-85479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQ-LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~-~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..-++..|+++..- +-.++-+.+.++..||...++++.|....+.+.....+... -.......+.+++..+.+.+. T Consensus 147 g~l~glki~~vGD~~~~~v~~S~~~~~~~~~~~~v~~~~P~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~aDvv~ 223 (306) T 2rgw_A 147 GRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAK---NIKFYEKESLDDLDDDIDVLY 223 (306) T ss_dssp SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHT---TCCEEEESSGGGCCTTCSEEE T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHC---CCEEEEEHHHHHHHHHHEEEE T ss_conf 88558889998056435317989999998489706986854754756777777623---743675002554311110685 Q ss_pred EEE Q ss_conf 120 Q gi|254780904|r 89 ATT 91 (268) Q Consensus 89 ~~~ 91 (268) .+. T Consensus 224 ~~~ 226 (306) T 2rgw_A 224 VTR 226 (306) T ss_dssp ECC T ss_pred CCC T ss_conf 224 No 17 >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Probab=78.62 E-value=3.1 Score=19.88 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=77.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CC-----------HHHHHHH-HHCCCCCCCHHCCCCHHHH Q ss_conf 8999428885479999999997199804980888899---99-----------9999985-3101344420013778998 Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PS-----------EKARSSS-ANADCVIDSVRVFSNLKEA 80 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~---~~-----------~~a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268) +.+..-+-.|.++--+++-+.-.|++.++++...-.. .+ ..+..++ ......+.......++.++ T Consensus 83 i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~~ 162 (268) T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268) T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH T ss_conf 57998421675288899887832725678101030122122205564099999999999997199987679743699999 Q ss_pred HHCCCCCEEEECC-CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE--EECCCCCCCCCHHH Q ss_conf 4125531012011-22343034124203566655311588169999458884243100012322--20476787341016 Q gi|254780904|r 81 IADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNI 157 (268) Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~--v~IPt~~~~~SLNL 157 (268) +............ ...... ................+++.|+.|+|+ |.|.+|++..... ..+-..+ ..|=. T Consensus 163 l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g~~~v~LG~--~ILR~ 236 (268) T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQ---GEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGP--RILRT 236 (268) T ss_dssp HHHGGGSSEEEEECC-----------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCS--SCCCT T ss_pred HHHCCCCCCEEEECCCCCCC---CCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCC--CCCHH T ss_conf 97286679489974200234---424678888764347981999983898-8999999999978999977899--81457 Q ss_pred HHHHHHHHH Q ss_conf 889999999 Q gi|254780904|r 158 SQAVLLMVW 166 (268) Q Consensus 158 S~AvaIvlY 166 (268) ..|+...+- T Consensus 237 ETA~i~als 245 (268) T 1vhk_A 237 ETAPLYALS 245 (268) T ss_dssp TTHHHHHHH T ss_pred HHHHHHHHH T ss_conf 749999999 No 18 >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Probab=78.01 E-value=3.2 Score=19.77 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=58.2 Q ss_pred HCCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCC Q ss_conf 21348968999428885479-99999999719980498088889999999998531-01344420013778998412553 Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHF 86 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~ 86 (268) ...-++..|+++.+ ..|+ -+.+.++.-||+ +++++.|....+.+.....+.. +........++.++.+++.+.+. T Consensus 150 ~g~~~~l~i~~vGd--~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDv 226 (315) T 1pvv_A 150 KGTIKGVKVVYVGD--GNNVAHSLMIAGTKLGA-DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADV 226 (315) T ss_dssp HSCCTTCEEEEESC--CCHHHHHHHHHHHHTTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE T ss_pred HCCCCCCEEEEECC--CCCHHHHHHHHHHHHCC-CEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCE T ss_conf 28756877999678--75315689999998418-7899889866886899999999998719859997699998557999 Q ss_pred CEE Q ss_conf 101 Q gi|254780904|r 87 IYA 89 (268) Q Consensus 87 ~~~ 89 (268) +.. T Consensus 227 vyt 229 (315) T 1pvv_A 227 IYT 229 (315) T ss_dssp EEE T ss_pred EEE T ss_conf 954 No 19 >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Probab=77.90 E-value=3.3 Score=19.75 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=55.7 Q ss_pred HCCCCCCEEEEECCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCC Q ss_conf 2134896899942888-547999999999719980498088889999999998531013444200137789984125531 Q gi|254780904|r 9 QNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~-p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268) ...-.+..|+.+..-. ..++-+.+.++..||...++++.|....+.+.....+.... ....++.+.++++.+.+.+ T Consensus 149 ~g~l~g~kv~~vGd~~~~~v~~S~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~---~~~~~~~d~~~a~~~aDvv 225 (310) T 3csu_A 149 QGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG---IAWSLHSSIEEVMAEVDIL 225 (310) T ss_dssp HSCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTT---CCEEECSCGGGTTTTCSEE T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC---CCCCCCHHHHHHCCCCCEE T ss_conf 2776898799984687771478999999961637389848841378389999998618---8653330677642478756 Q ss_pred EEE Q ss_conf 012 Q gi|254780904|r 88 YAT 90 (268) Q Consensus 88 ~~~ 90 (268) ..+ T Consensus 226 y~~ 228 (310) T 3csu_A 226 YMT 228 (310) T ss_dssp EEC T ss_pred EEE T ss_conf 420 No 20 >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* Probab=75.82 E-value=3.7 Score=19.39 Aligned_cols=146 Identities=11% Similarity=0.038 Sum_probs=74.1 Q ss_pred CCCCCCEEEEE-C-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH------------HHHHH-HCCCCCCCHHCC Q ss_conf 13489689994-2-888547999999999719980498088889999999------------99853-101344420013 Q gi|254780904|r 10 NSAKGPVIILV-D-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA------------RSSSA-NADCVIDSVRVF 74 (268) Q Consensus 10 ~~~~~~~vVLv-~-p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a------------~~~a~-~a~~~~~~~~~~ 74 (268) .....+.|.|. . |..+...=.+++-+.-.|++.++++.-.-.....+. ..++. .....+...... T Consensus 66 ~~~~~~~i~l~~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~ 145 (229) T 2egv_A 66 TKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKP 145 (229) T ss_dssp CCCCSSEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCC T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 67998742899832110457999999988818229998743302101377877899999999998612156778753245 Q ss_pred CCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 77899841255310120112234303412420356665531158816999945888424310001232220476787341 Q gi|254780904|r 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 (268) Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~S 154 (268) .++.+++.............. ...........+++.++.|+|+ |.|.+|++.....=..+.+=.-.. T Consensus 146 ~~l~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I 212 (229) T 2egv_A 146 VRLSDLIPESEENIILDNFYE------------GVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPYT 212 (229) T ss_dssp EEGGGCCCCSSEEEEECTTSC------------CBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSSC T ss_pred HHHHHHHHHCCCCHHHHHHHH------------CCCCHHHHHCCCCCEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC T ss_conf 679999853431111122331------------0352123320254158980788-999999999998799897669982 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 01688999999999 Q gi|254780904|r 155 LNISQAVLLMVWEC 168 (268) Q Consensus 155 LNLS~AvaIvlYEl 168 (268) |=.-+|+-.++.-+ T Consensus 213 LR~ETA~i~als~l 226 (229) T 2egv_A 213 LRTETAVVSIVSIL 226 (229) T ss_dssp CCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 51775999999998 No 21 >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Probab=74.71 E-value=4 Score=19.21 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=79.4 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC--CCCH-H-----------HHHHHH-HCCCCCCCHHCCCCHHHH Q ss_conf 899942888547999999999719980498088889--9999-9-----------999853-101344420013778998 Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSE-K-----------ARSSSA-NADCVIDSVRVFSNLKEA 80 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~--~~~~-~-----------a~~~a~-~a~~~~~~~~~~~~~~~a 80 (268) +.++.-+--+.+.-.+++-+.-.|++.++++.-.-. .++. + +..++. .....+.......++.++ T Consensus 82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~ 161 (257) T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 161 (257) T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 89998402338899999999974876899997102335465667887699999999999986599767865410038999 Q ss_pred HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH Q ss_conf 41255310120112234303412420356665531158816999945888424310001232220476787341016889 Q gi|254780904|r 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268) ....+............. ..........+++.+++|+|+ |.|++|++.....=-.+.+=.-..|=..+| T Consensus 162 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~vsLG~~ILR~ETA 230 (257) T 1vhy_A 162 CAENDGALKLNLHPRAHY----------SIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRVLRTETA 230 (257) T ss_dssp HTCCSSCEEEEECTTCCC----------BGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHH T ss_pred HHHCCCCCCHHHHHHHHH----------HHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH T ss_conf 861544421011024444----------566665303686589985777-889899999998798783268981668879 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780904|r 161 VLLMVWECM 169 (268) Q Consensus 161 vaIvlYEl~ 169 (268) +-.++--+. T Consensus 231 ~i~als~~~ 239 (257) T 1vhy_A 231 SLAAISALQ 239 (257) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 22 >2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} Probab=73.27 E-value=4.3 Score=18.99 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=68.7 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHH----HH--HHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECC Q ss_conf 9999997199804980888899999999----98--53101344420013778998412553101201122343034124 Q gi|254780904|r 31 VARAMWNFNLTQLRLVNPRDGWPSEKAR----SS--SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104 (268) Q Consensus 31 iaRa~~~fG~~~L~lv~P~~~~~~~~a~----~~--a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 104 (268) ++=++-+||.+.++|.+.. ++++. .. .-|+.+. +....++...++... +..-..+-.-... T Consensus 21 V~LtARAfGA~~i~l~~~~----D~~v~etv~~V~~rwGG~F~---ve~~~~~~~~ik~~~------G~vVHLTMYG~~i 87 (201) T 2yy8_A 21 VALTARAFGADGIIIASEE----DEKVKESVEDVVKRWGGPFF---IEFNRNWRKVMKEFT------GVKVHLTMYGLHV 87 (201) T ss_dssp HHHHHHHTTCSEEEESSSC----CHHHHHHHHHHHHHHCSCCB---CCBCSCHHHHHHHCC------SEEEEEEEEEEEH T ss_pred HHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHHHCCCCEE---EEECCCHHHHHHHCC------CEEEEEECCCCCC T ss_conf 8899987168758974788----73699999999985299669---997468899998659------9799984478760 Q ss_pred CCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 203566655311588169999458884243100012322204767873410168899999999999621 Q gi|254780904|r 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 (268) Q Consensus 105 ~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~ 173 (268) .+....+......+.++.+|.|.|. ++.+.-++|||-++|--.|.-+. .|.||+|-.|+.... T Consensus 88 ~dvi~~Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgNQPHSEV----AALAIFLDrl~~G~e 150 (201) T 2yy8_A 88 DDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSEV----AALAVLLDRLLEGKG 150 (201) T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCHH----HHHHHHHHHHTTTGG T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHHH----HHHHHHHHHHHCCCH T ss_conf 2677988752556885899978885--99899833675255478872899----999999998707705 No 23 >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Probab=70.37 E-value=5 Score=18.58 Aligned_cols=81 Identities=11% Similarity=0.229 Sum_probs=52.1 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 134896899942888547999999999719980498088889999999998531-0134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..-.+..|+++..-+..=.-+.+.++.-||+ .++++.|....|.+.....+.. +...-....++.++++++++.+.+. T Consensus 172 g~l~~~~i~~vgd~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~eal~~aDvIy 250 (359) T 2w37_A 172 GKLQGLTLTFMGDGRNNVANSLLVTGAILGV-NIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVY 250 (359) T ss_dssp SCCTTCEEEEESCTTSHHHHHHHHHHHHHTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEE T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEE T ss_conf 9635755999868865715568999864699-899957833488688999999999973986999789999974699999 Q ss_pred EEE Q ss_conf 120 Q gi|254780904|r 89 ATT 91 (268) Q Consensus 89 ~~~ 91 (268) ... T Consensus 251 t~~ 253 (359) T 2w37_A 251 TDV 253 (359) T ss_dssp ECC T ss_pred ECC T ss_conf 754 No 24 >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 1sov_A 1sow_A* 3czm_A* Probab=69.04 E-value=5.3 Score=18.40 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=47.3 Q ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCH--HCCCCHHHHHHCCCCCE Q ss_conf 4896899942888547999-99999971998049808888999999999853101344420--01377899841255310 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADLHFIY 88 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~--~~~~~~~~a~~~~~~~~ 88 (268) ++..-|.++. .||||+ +|-+++.-++.+|+|++...+...-.+.=.+..+....... ....+..+++++++.++ T Consensus 7 ~k~~KI~IiG---aG~VG~~~A~~l~~~~l~el~LiDi~~~~~~g~alDL~h~~~~~~~~~~i~~~~~~~~~~~~adivv 83 (331) T 1pzg_A 7 QRRKKVAMIG---SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331) T ss_dssp SCCCEEEEEC---CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE T ss_pred CCCCCEEEEC---CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCEEEE T ss_conf 7899389989---7989999999997189987999908998028899988670113799669981798377616782899 Q ss_pred EEECCCCC Q ss_conf 12011223 Q gi|254780904|r 89 ATTARNRN 96 (268) Q Consensus 89 ~~~~~~~~ 96 (268) .+.+..+. T Consensus 84 itag~~rk 91 (331) T 1pzg_A 84 VTAGLTKV 91 (331) T ss_dssp ECCSCSSC T ss_pred EECCCCCC T ss_conf 70322125 No 25 >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Probab=65.59 E-value=6.2 Score=17.97 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=51.3 Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 489689994288854799-9999999719980498088889999999998531-01344420013778998412553101 Q gi|254780904|r 12 AKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) .....++.+..-+ .|+. +.++++.-||+ +++++.|....+.+.....+.. +...-....++.++++++.+.+.+.. T Consensus 153 ~~~~~~~~~~~~~-~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvv~t 230 (335) T 1dxh_A 153 LHDISYAYLGDAR-NNMGNSLLLIGAKLGM-DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHT 230 (335) T ss_dssp GGGCEEEEESCCS-SHHHHHHHHHHHHTTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEE T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEE T ss_conf 3685799856887-6514799999997798-6999668545787899999999999749989998499998367988987 Q ss_pred EE Q ss_conf 20 Q gi|254780904|r 90 TT 91 (268) Q Consensus 90 ~~ 91 (268) .. T Consensus 231 ~~ 232 (335) T 1dxh_A 231 DV 232 (335) T ss_dssp CC T ss_pred EE T ss_conf 77 No 26 >1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2 Probab=61.22 E-value=5.2 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.5 Q ss_pred EEECCCCC----CHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 99428885----479999999997199804980888 Q gi|254780904|r 18 ILVDPQLG----ENIGMVARAMWNFNLTQLRLVNPR 49 (268) Q Consensus 18 VLv~p~~p----~NiGaiaRa~~~fG~~~L~lv~P~ 49 (268) ||.+.|++ .-+|-|||+|.-|+++.+++.+.. T Consensus 14 il~n~~s~e~~T~~~gqIARAaaIF~VdEIvVydD~ 49 (268) T 1k3r_A 14 LTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDD 49 (268) T ss_dssp TTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECS T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 956689989999999999999982267679998189 No 27 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=54.61 E-value=9.7 Score=16.77 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=61.5 Q ss_pred CCCHHH-HHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC------ Q ss_conf 854799-999999971998-049808888999999999853101344420013778998412553101201122------ Q gi|254780904|r 24 LGENIG-MVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR------ 95 (268) Q Consensus 24 ~p~NiG-aiaRa~~~fG~~-~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 95 (268) ..|++| +++|+++..|.. .++.+++ +++....|..... ...+..+++++..+++.++..+.-.. T Consensus 12 G~GlmG~Sia~al~~~~~~~~V~~~D~-----~~~~~~~a~~~g~---id~~~~~~~~~~~~~DlVIla~P~~~~~~vl~ 83 (317) T 3dzb_A 12 GLGLIGGSLALGIKRDHPDYEILGYNR-----SDYSRNIALERGI---VDRATGDFKEFAPLADVIILAVPIKQTMAYLK 83 (317) T ss_dssp CCSHHHHHHHHHHHTTCTTSEEEEECS-----CHHHHHHHHHTCS---CSEEESCHHHHGGGCSEEECCSCHHHHHHHHH T ss_pred EECHHHHHHHHHHHHCCCCCEEEEEEC-----CHHHHHHHHHCCC---CCCCCCCHHHHHCCCCEEEEECCHHHHHHHHH T ss_conf 218899999999996099988999969-----9999999998699---74003889886145898999168126678899 Q ss_pred ---C--C-CEE-EECCCCH---HHHHHHHHCCCCCEEE-----EEECCCCCCCCCCCCCCCCE--EECCC Q ss_conf ---3--4-303-4124203---5666553115881699-----99458884243100012322--20476 Q gi|254780904|r 96 ---N--N-FKS-VLAPKEA---AIVLNERIFSGQNVGI-----IFGRERWGLTNEEIALSNAI--ISFPV 148 (268) Q Consensus 96 ---~--~-~~~-~~~~~~~---~~~~~~~~~~~~~val-----VFG~E~~GLs~eel~~cd~~--v~IPt 148 (268) . . ... ....... .............+-+ +||+|..|..+....+.+.- +-+|. T Consensus 84 ~l~~~~~~~~~ivtDv~SvK~~~~~~~~~~~~~~~~~fV~~HPmaG~e~~G~~~a~~~lf~~~~~i~~p~ 153 (317) T 3dzb_A 84 ELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPMAGSHKSGAIAADVTLFENAYYIFTPT 153 (317) T ss_dssp HHTTSCCCTTCEEECCCSCCHHHHHHHHHHHTTSSCEECEEEECBCC------CCCTTTTTTSEEEEECC T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCEEEECCC T ss_conf 9875550467599860565623899999865668851103665546455677676155445843773378 No 28 >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* Probab=54.52 E-value=9.7 Score=16.76 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=43.5 Q ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 1348968999428-885479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p-~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ....+..|+.+.. .+...+.+.++++.-||...++++.|....+..+....+. .....+.+..+++.+.+.+. T Consensus 145 g~~~~l~i~~~gd~~~~~v~~S~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~e~~~~aDvvy 218 (299) T 1pg5_A 145 NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELN------YPVKEVENPFEVINEVDVLY 218 (299) T ss_dssp SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCC------SCEEEESCGGGTGGGCSEEE T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHC------CCCCCCCCHHHHHCCCCEEE T ss_conf 885556378851776105778899999874886311258301354577765406------87433569888707876687 Q ss_pred EE Q ss_conf 12 Q gi|254780904|r 89 AT 90 (268) Q Consensus 89 ~~ 90 (268) .+ T Consensus 219 ~~ 220 (299) T 1pg5_A 219 VT 220 (299) T ss_dssp EE T ss_pred EC T ss_conf 50 No 29 >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Probab=52.21 E-value=11 Score=16.53 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=72.0 Q ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CC-H----HHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCC Q ss_conf 99942-8885479999999997199804980888899---99-9----9999853-101344420013778998412553 Q gi|254780904|r 17 IILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PS-E----KARSSSA-NADCVIDSVRVFSNLKEAIADLHF 86 (268) Q Consensus 17 vVLv~-p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~---~~-~----~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~ 86 (268) .++.. |..+.-.-.+++-+.-+|+++++++...-.. .. + .+..++. .....+..+....++.+++.+... T Consensus 80 ~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~~ 159 (257) T 3kw2_A 80 TIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPK 159 (257) T ss_dssp EEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSCT T ss_pred EEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCC T ss_conf 99972444410799998787761844899511232033203788999999999997275538677155489999974701 Q ss_pred CEEE-ECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 1012-011223430341242035666553115881699994588842431000123222047678734101688999999 Q gi|254780904|r 87 IYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 (268) Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvl 165 (268) .... ............. .............+++.++.|+|+ |.|..|++.....=-.|.+=.-..|=..+|+-..+ T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~l~~~g~~~vsLG~~ILRtETA~i~al 236 (257) T 3kw2_A 160 AAVRLIAYVDEAVRAEIT--QGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESRLRTETAGLVAC 236 (257) T ss_dssp TSEEEEECCCTTCC-------CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHH T ss_pred CCCCEECHHHHHHHHHHH--HHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH T ss_conf 242120001320002233--200121134236881799988998-99999999999879989867998255786999999 No 30 >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Probab=50.56 E-value=11 Score=16.37 Aligned_cols=139 Identities=21% Similarity=0.161 Sum_probs=71.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC--CCC-HH-------HHHHHH-HCCCCCCCHHCCCCHHHHHHC Q ss_conf 8999428885479999999997199804980888-89--999-99-------999853-101344420013778998412 Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG--WPS-EK-------ARSSSA-NADCVIDSVRVFSNLKEAIAD 83 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~--~~~-~~-------a~~~a~-~a~~~~~~~~~~~~~~~a~~~ 83 (268) +.+..-+-.+.+.--+++-|.-+|++.++++.-. +. ..+ .+ +..++. .....+.......++.++... T Consensus 73 i~l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~ 152 (228) T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 152 (228) T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC T ss_pred EEEEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 58997302807899999998843117999970034421222011021378999999996499446621476477888765 Q ss_pred CCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH Q ss_conf 55310120112234303412420356665531158816999945888424310001232220476787341016889999 Q gi|254780904|r 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268) .... ....... ..........+++.|+.|+|+ |.|.+|++.....=-.+.+=.-..|=.-+|+ | T Consensus 153 ~~~~-------------~~~~~~~-~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~~~~~~~~~v~LG~~ILR~ETA~-i 216 (228) T 1v6z_A 153 AQGL-------------VAHVGAT-ARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRILRAETAA-L 216 (228) T ss_dssp SSEE-------------EECTTCC-CCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSCCCHHHHH-H T ss_pred HHHH-------------HHHCCCC-CCCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHH-H T ss_conf 4443-------------3200222-232312356760699967987-8899999999978988976799824578599-9 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780904|r 164 MVWECME 170 (268) Q Consensus 164 vlYEl~r 170 (268) ++-.+.+ T Consensus 217 ~alsi~~ 223 (228) T 1v6z_A 217 ALLALCT 223 (228) T ss_dssp HHHHHHT T ss_pred HHHHHHH T ss_conf 9999999 No 31 >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Probab=48.83 E-value=12 Score=16.20 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=55.2 Q ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCC Q ss_conf 13489689994288854799-9999999719980498088889999999998531-013444200137789984125531 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFI 87 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268) ..-++..|++++. ..+++. +.+..+.-||+ ++.++.|....+.+.....+.. ............+.++++.+.+.+ T Consensus 144 g~l~gl~i~~vGd-~~~~~~~s~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvv 221 (307) T 2i6u_A 144 GALRGLRLSYFGD-GANNMAHSLLLGGVTAGI-HVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL 221 (307) T ss_dssp SCCTTCEEEEESC-TTSHHHHHHHHHHHHTTC-EEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE T ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHHHCCC-EEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCEE T ss_conf 8978988999778-887715079999986698-58725872348888999999988886188518964688886489889 Q ss_pred EEEE Q ss_conf 0120 Q gi|254780904|r 88 YATT 91 (268) Q Consensus 88 ~~~~ 91 (268) .... T Consensus 222 ~~~~ 225 (307) T 2i6u_A 222 VTDT 225 (307) T ss_dssp EECC T ss_pred EEEE T ss_conf 9752 No 32 >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Probab=46.82 E-value=13 Score=16.00 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=52.2 Q ss_pred CCCCCCEEEEECCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 134896899942888-5479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~~-p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..-++..|+++..-. ..+.-+.+.++..||+ +++++.|....+.++....+... ......+.++++++.+.+.+. T Consensus 151 g~l~glki~~vGd~~~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~---~~~~~~~~d~~ea~~~aDvv~ 226 (308) T 1ml4_A 151 GRIDGLKIGLLGDLKYGRTVHSLAEALTFYDV-ELYLISPELLRMPRHIVEELREK---GMKVVETTTLEDVIGKLDVLY 226 (308) T ss_dssp SCSSSEEEEEESCTTTCHHHHHHHHHGGGSCE-EEEEECCGGGCCCHHHHHHHHHT---TCCEEEESCTHHHHTTCSEEE T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCHHHCCCHHHHHHHHHC---CCCEEECCCHHHHHCCCCEEE T ss_conf 88357779864587644128889999987698-39997964754878899999971---983021289899630575220 Q ss_pred EEE Q ss_conf 120 Q gi|254780904|r 89 ATT 91 (268) Q Consensus 89 ~~~ 91 (268) .+. T Consensus 227 ~~~ 229 (308) T 1ml4_A 227 VTR 229 (308) T ss_dssp ECC T ss_pred CCE T ss_conf 220 No 33 >3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; 2.70A {Synechocystis SP} Probab=43.84 E-value=14 Score=15.72 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=32.6 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9987289987543899999999986316999899999999999 Q gi|254780904|r 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 (268) Q Consensus 202 ~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~ 244 (268) -+-+..|+.+-.+...+...++++|+|+..++.|+.-..-++. T Consensus 75 e~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a 117 (148) T 3ohw_B 75 ELYMKEFYAPYPNTKVIEMGTKHFLGRAPLNQKEIQQYNQILA 117 (148) T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 9999987026662599999999970899999799999999999 No 34 >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Probab=41.60 E-value=15 Score=15.50 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=36.4 Q ss_pred EEEECCCCCCHHHHHH--HHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCHHCCCCHHHHHHCCCCCEEE Q ss_conf 9994288854799999--99997199804980888899999999985310----13444200137789984125531012 Q gi|254780904|r 17 IILVDPQLGENIGMVA--RAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRVFSNLKEAIADLHFIYAT 90 (268) Q Consensus 17 vVLv~p~~p~NiGaia--Ra~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (268) |..+. .||||+.+ +.+..=-+++|+|++.. .+++...++.- ........+.....+++++++.++.+ T Consensus 4 I~IiG---aG~VG~~~a~~l~~~~~~~el~LiDi~----~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivvit 76 (309) T 1hyh_A 4 IGIIG---LGNVGAAVAHGLIAQGVADDYVFIDAN----EAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIST 76 (309) T ss_dssp EEEEC---CSHHHHHHHHHHHHHTCCSEEEEECSS----HHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEEC T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCCEEEEECCC----CCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCEEEEE T ss_conf 99989---698999999999846999979998589----97258899998756755789847942877885688668996 Q ss_pred ECCCC Q ss_conf 01122 Q gi|254780904|r 91 TARNR 95 (268) Q Consensus 91 ~~~~~ 95 (268) .+..+ T Consensus 77 ag~pr 81 (309) T 1hyh_A 77 LGNIK 81 (309) T ss_dssp CSCGG T ss_pred ECCCC T ss_conf 10133 No 35 >2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13 Probab=41.12 E-value=15 Score=15.58 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=30.3 Q ss_pred HHHHCCCCCCHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 9987289987543--8999999999863169998999999999999 Q gi|254780904|r 202 SLEERGYFRPVEK--KKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 (268) Q Consensus 202 ~l~~~~f~~~~~~--~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~ 245 (268) +..+.||..+++. +..+...|+.++.+..+|+.|+..+.|+=+. T Consensus 23 vf~DlG~~daeel~~K~~L~~~I~~~i~~~glTQ~eaA~~lGisq~ 68 (120) T 2o38_A 23 VFADLGMPDAEERQTKLRLAYALNAVIDRARLSQAAAAARLGINQP 68 (120) T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHH T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHH T ss_conf 1011598968999999999999999999869967556555088889 No 36 >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Probab=40.83 E-value=16 Score=15.43 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=48.8 Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 489689994288854799-999999971998049808888999999999853-101344420013778998412553101 Q gi|254780904|r 12 AKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) ..+..|+.+..-+ .|+. +.++.+..||+ ++.++.|....|.+.....+. .+...-.....+.++++++.+.+.+.. T Consensus 153 ~~~~~i~~~~~~~-~~v~~s~~~~~~~~g~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt 230 (333) T 1duv_G 153 FNEMTLVYAGDAR-NNMGNSMLEAAALTGL-DLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYT 230 (333) T ss_dssp GGGCEEEEESCTT-SHHHHHHHHHHHHHCC-EEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEE T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEE T ss_conf 5550588617654-3201258888876397-1799637655876789999999987629867986389999616983003 Q ss_pred EE Q ss_conf 20 Q gi|254780904|r 90 TT 91 (268) Q Consensus 90 ~~ 91 (268) .. T Consensus 231 ~~ 232 (333) T 1duv_G 231 DV 232 (333) T ss_dssp CC T ss_pred EE T ss_conf 46 No 37 >2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Probab=40.83 E-value=16 Score=15.42 Aligned_cols=53 Identities=23% Similarity=0.114 Sum_probs=39.9 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCE----EECCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 311588169999458884243100012322----2047678734101688999999999996 Q gi|254780904|r 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268) Q Consensus 114 ~~~~~~~valVFG~E~~GLs~eel~~cd~~----v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268) ........++|+| -..|++.++.+.-..+ +++ .-.+|=-+|+++|+-||+=++ T Consensus 148 ~~~~~~~~~FILg-Dh~~l~~~e~~~L~~~~~~~iSl----Gp~~L~a~hcI~ivh~~LDr~ 204 (208) T 2qwv_A 148 DIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 204 (208) T ss_dssp TSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH T ss_pred HCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHHHHHHHHHHHHCC T ss_conf 2568999879970-89998978999998718823754----708888778999999987202 No 38 >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Probab=40.67 E-value=10 Score=16.61 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHH Q ss_conf 7999999999719980498088889999999 Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 (268) Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a 57 (268) -.+|+++++..+|+.++-|+.|...+.++.. T Consensus 133 ~~~Ai~~AL~~lgakrIallTPY~~~v~~~~ 163 (273) T 2xed_A 133 SAGALVEGLRALDAQRVALVTPYMRPLAEKV 163 (273) T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHH T ss_conf 8999999999649985799747978999999 No 39 >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Probab=40.00 E-value=16 Score=15.34 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=38.5 Q ss_pred EEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCC----CCCCHHC-CCCHHHHHHCCCCCEEE Q ss_conf 99942888547999-999999719980498088889999999998531013----4442001-37789984125531012 Q gi|254780904|r 17 IILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVRV-FSNLKEAIADLHFIYAT 90 (268) Q Consensus 17 vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~----~~~~~~~-~~~~~~a~~~~~~~~~~ 90 (268) |.+++ .||||+ ++-++..-++.+|.|++... +.+...++.-.+ ......+ .....+..++++.++.+ T Consensus 5 V~iiG---aG~VG~~~a~~l~~~~l~el~L~D~~~----~~~~g~a~DL~~~~~~~~~~~~v~~~~~~~~~~dadivvit 77 (309) T 1ur5_A 5 ISIIG---AGFVGSTTAHWLAAKELGDIVLLDIVE----GVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVT 77 (309) T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCSEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEEC T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCCEEEEC T ss_conf 99999---798999999999848998799980898----71153898887221126888679715998996899999986 Q ss_pred ECCCC Q ss_conf 01122 Q gi|254780904|r 91 TARNR 95 (268) Q Consensus 91 ~~~~~ 95 (268) .+..+ T Consensus 78 ag~~~ 82 (309) T 1ur5_A 78 SGAPR 82 (309) T ss_dssp CCC-- T ss_pred CCCCC T ss_conf 89889 No 40 >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Probab=39.38 E-value=17 Score=15.28 Aligned_cols=77 Identities=17% Similarity=0.061 Sum_probs=42.1 Q ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCC-----CCCCHHCCCCHHHHHHCCC Q ss_conf 48968999428885479999-99999719980498088889999999998531013-----4442001377899841255 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-----VIDSVRVFSNLKEAIADLH 85 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~-----~~~~~~~~~~~~~a~~~~~ 85 (268) ...+-|..+. .|+||+. +=++..-++.+|+|++.. .+++...++.-.+ ............+++++++ T Consensus 5 m~~~KV~IiG---aG~VG~~~a~~l~~~~l~el~L~Di~----~~~a~g~a~DL~~~~~~~~~~~~~~~~~~~~~~~~ad 77 (324) T 3gvi_A 5 MARNKIALIG---SGMIGGTLAHLAGLKELGDVVLFDIA----EGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD 77 (324) T ss_dssp -CCCEEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSS----SSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCS T ss_pred CCCCEEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCC----CCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHCCCE T ss_conf 8888799989---79899999999963999889998489----9855038675443353678886581688678855871 Q ss_pred CCEEEECCCC Q ss_conf 3101201122 Q gi|254780904|r 86 FIYATTARNR 95 (268) Q Consensus 86 ~~~~~~~~~~ 95 (268) .++.+.+..+ T Consensus 78 ivvitag~~~ 87 (324) T 3gvi_A 78 VVIVTAGVPR 87 (324) T ss_dssp EEEECCSCCC T ss_pred EEEEECCCCC T ss_conf 8998436789 No 41 >2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Probab=35.09 E-value=14 Score=15.70 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=10.8 Q ss_pred HHHHHHHHHCCCCEEEECCCCC Q ss_conf 9999999971998049808888 Q gi|254780904|r 29 GMVARAMWNFNLTQLRLVNPRD 50 (268) Q Consensus 29 GaiaRa~~~fG~~~L~lv~P~~ 50 (268) +|+.++++.+|+.++-++.|.. T Consensus 97 ~A~~~AL~~lg~krIav~TPY~ 118 (223) T 2dgd_A 97 ESVYELLKKLNVRKLWIGTPYI 118 (223) T ss_dssp HHHHHHHHHTTCCEEEEEESSC T ss_pred HHHHHHHHHCCCCEEEEECCCC T ss_conf 9999999972998079967886 No 42 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Probab=34.45 E-value=20 Score=14.79 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=45.1 Q ss_pred CCCCEEEEECCCCCCHHHHHH--HHHHHCCCCEEEECCCCCCCCCHHHHHHHHH---C-CCCCCCHHCCCCHHHHHHCCC Q ss_conf 489689994288854799999--9999719980498088889999999998531---0-134442001377899841255 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVA--RAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---A-DCVIDSVRVFSNLKEAIADLH 85 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGaia--Ra~~~fG~~~L~lv~P~~~~~~~~a~~~a~~---a-~~~~~~~~~~~~~~~a~~~~~ 85 (268) -++.-|..+. .||||+.+ +.+.+=-+++|+|++.. .+++...++. + ........+.....+++++++ T Consensus 4 ~k~~KV~IiG---aG~VG~~~a~~l~~~~l~~el~L~Di~----~~~a~g~a~DL~~~~~~~~~~~~i~~~~~~~~~daD 76 (317) T 3d0o_A 4 FKGNKVVLIG---NGAVGSSYAFSLVNQSIVDELVIIDLD----TEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDAD 76 (317) T ss_dssp CCCCEEEEEC---CSHHHHHHHHHHHHHCSCSEEEEECSC----HHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCS T ss_pred CCCCEEEEEC---CCHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCC T ss_conf 7798099989---788999999999707998869999178----975434889886125147997699369789957998 Q ss_pred CCEEEECCCCC Q ss_conf 31012011223 Q gi|254780904|r 86 FIYATTARNRN 96 (268) Q Consensus 86 ~~~~~~~~~~~ 96 (268) .++.+.+..+. T Consensus 77 vvvitaG~~rk 87 (317) T 3d0o_A 77 LVVICAGAAQK 87 (317) T ss_dssp EEEECCCCCCC T ss_pred EEEECCCCCCC T ss_conf 99983688899 No 43 >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Probab=33.78 E-value=20 Score=14.73 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=44.1 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 134896899942888547999999999719980498088889999999998531-0134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..-++..|+++..-...=.-+.+.++.-||+ +++++.|....+.+.....+.. +...........++++++.+++.+. T Consensus 163 g~l~gl~i~~vGd~~~~~~~s~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvy 241 (325) T 1vlv_A 163 GRLKGVKVVFMGDTRNNVATSLMIACAKMGM-NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVY 241 (325) T ss_dssp SCSTTCEEEEESCTTSHHHHHHHHHHHHTTC-EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEE T ss_pred CCCCCCCCEEECCCCCCEEEHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEE T ss_conf 9745677257668755375319999997598-499973843388889999876554423764201069999970698664 Q ss_pred E Q ss_conf 1 Q gi|254780904|r 89 A 89 (268) Q Consensus 89 ~ 89 (268) . T Consensus 242 t 242 (325) T 1vlv_A 242 T 242 (325) T ss_dssp E T ss_pred E T ss_conf 0 No 44 >2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Probab=33.31 E-value=21 Score=14.68 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=64.3 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHH------HHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEEC- Q ss_conf 999999719980498088889999999998------5310134442001377899841255310120112234303412- Q gi|254780904|r 31 VARAMWNFNLTQLRLVNPRDGWPSEKARSS------SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA- 103 (268) Q Consensus 31 iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~------a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 103 (268) ++=++-+||.+.++|-. + +++.... .-|+.+.... .++...++... ......+ T Consensus 24 v~LtARAfGA~~i~l~~--~---D~~v~etv~~V~~rwGG~F~v~~----~~w~~~ik~~~-----------G~vVHLTM 83 (178) T 2o3a_A 24 VALTARAFGAKGIYFDT--E---DKSVFESVRDVVERWGGDFFIKA----VSWKKLLREFD-----------GLKVHLTM 83 (178) T ss_dssp HHHHHHHTTCSEEEESS--C---CHHHHHHHHHHHHHHCSCCEEEE----CCHHHHHHHCC-----------SEEEEEEE T ss_pred HHHHHHHHCCCEEEECC--C---CHHHHHHHHHHHHHCCCCEEEEE----CCHHHHHHHCC-----------CEEEEECC T ss_conf 88999871697689717--7---73688989999972299328996----48999987559-----------98999657 Q ss_pred CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 420356665531158816999945888424310001232220476787341016889999999999 Q gi|254780904|r 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268) Q Consensus 104 ~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268) --..............++.+|.|.|. .+.+.-++|||-++|--.|.-+. .|.||+|-.|+ T Consensus 84 YG~~i~~~i~~Ir~~~~ilvVVGaeK--VP~evYe~ADyNVaVgNQPHSEV----AALAiFLDrl~ 143 (178) T 2o3a_A 84 YGIPLPQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSEV----AALAVFLDRVL 143 (178) T ss_dssp EEEEHHHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCHH----HHHHHHHHHHT T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHHH----HHHHHHHHHHC T ss_conf 89864677766304696699988884--99899732674256379882899----99999999862 No 45 >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus} Probab=32.39 E-value=22 Score=14.58 Aligned_cols=15 Identities=0% Similarity=-0.102 Sum_probs=6.3 Q ss_pred HHHHHHHHHHCCCCE Q ss_conf 999999999719980 Q gi|254780904|r 28 IGMVARAMWNFNLTQ 42 (268) Q Consensus 28 iGaiaRa~~~fG~~~ 42 (268) +-=.+|.+..++++- T Consensus 79 ~~Dt~~vls~~~~d~ 93 (291) T 3d6n_B 79 FFDTLKTFEGLGFDY 93 (291) T ss_dssp HHHHHHHHHHTTCSE T ss_pred HHHHHHHHHCCCCEE T ss_conf 889999753246438 No 46 >1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} Probab=32.20 E-value=22 Score=14.56 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=59.4 Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC--CHH-----HHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 994288854799999999971998049808888999--999-----9998531-01344420013778998412553101 Q gi|254780904|r 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEK-----ARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~--~~~-----a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) +...+--+...-.+++-|.-.|++.++++...-... ..+ +..++.- ....+.......++ T Consensus 89 l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~~k~~r~~~i~~~A~eQsgr~~lP~I~~~~~~------------ 156 (234) T 1z85_A 89 VVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKL------------ 156 (234) T ss_dssp EEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEEECCSC------------ T ss_pred EEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHC------------ T ss_conf 99712532037999987652699999971234422000388999999986753188658876645414------------ Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999 Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268) ........... ............+++.|+.|+|+ |.|.+|++....-+ .|.+=.-..|=..+|+-+.+- T Consensus 157 ----~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~E~~~~~~~~-~~v~LG~~ILR~ETA~i~als 225 (234) T 1z85_A 157 ----EFSGNVITLDL--DASQNLLDANLEGSITVVVGPEG-GFSEKERELLRSST-TIVSLGKKILRFETAAILTVG 225 (234) T ss_dssp ----CCCSEEEEECC-----CCCSSSCCCSSEEEEECCTT-CCCHHHHHHHHHHS-EEC------CCHHHHHHHHHH T ss_pred ----HHCCCCEEEEC--CHHHHHCCCCCCCCEEEEECCCC-CCCHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH T ss_conf ----00288366412--01221000023684499989988-99999999998499-898789982336729999999 No 47 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=32.05 E-value=12 Score=16.24 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=23.4 Q ss_pred CCCHHH-HHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHH Q ss_conf 854799-999999971998-049808888999999999853 Q gi|254780904|r 24 LGENIG-MVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSA 62 (268) Q Consensus 24 ~p~NiG-aiaRa~~~fG~~-~L~lv~P~~~~~~~~a~~~a~ 62 (268) .-|++| ++||+....|+. +++.++ .+++....+. T Consensus 40 GlG~mG~siA~~L~~~g~~~~V~g~D-----~~~~~~~~a~ 75 (314) T 3ggo_A 40 GVGFMGGSFAKSLRRSGFKGKIYGYD-----INPESISKAV 75 (314) T ss_dssp SCSHHHHHHHHHHHHTTCCSEEEEEC-----SCHHHHHHHH T ss_pred EECHHHHHHHHHHHCCCCCCEEEEEE-----CCHHHHHHHH T ss_conf 20889999999998069998899997-----9999999999 No 48 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Probab=31.99 E-value=22 Score=14.54 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=11.4 Q ss_pred CCHHHH-HHHHHHHCCCCEEEECCCC Q ss_conf 547999-9999997199804980888 Q gi|254780904|r 25 GENIGM-VARAMWNFNLTQLRLVNPR 49 (268) Q Consensus 25 p~NiGa-iaRa~~~fG~~~L~lv~P~ 49 (268) -||||. ++|-+++||+. ++..+|. T Consensus 154 ~G~IG~~va~~l~~fg~~-V~~~~~~ 178 (320) T 1gdh_A 154 FGSIGQALAKRAQGFDMD-IDYFDTH 178 (320) T ss_dssp CSHHHHHHHHHHHTTTCE-EEEECSS T ss_pred ECHHHHHHHHHHHHCCCE-EEEECCC T ss_conf 666999999998742876-8886687 No 49 >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Porphyromonas gingivalis atcc 33277} Probab=29.86 E-value=24 Score=14.32 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=41.3 Q ss_pred CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHHH---HCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC Q ss_conf 54799999-99997199-8049808888999999999853---101344420013778998412553101201122 Q gi|254780904|r 25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 (268) Q Consensus 25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a~---~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (268) .||||+.+ -++...++ ++|+|++.. .+.+...++ ++........+.....+++++++.++.+.+..+ T Consensus 17 aG~VG~~~a~~l~~~~l~~el~L~D~~----~~~~~G~a~DL~~~~~~~~~~~~~~~~~~~l~daDiVVitAG~~r 88 (343) T 3fi9_A 17 AGMIGSNMAQTAAMMRLTPNLCLYDPF----AVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPR 88 (343) T ss_dssp TSHHHHHHHHHHHHTTCCSCEEEECSC----HHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC--- T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCC----CCCCCHHHHHHHHCCCCCCCEEEECCHHHHHCCCCEEEECCCCCC T ss_conf 867999999999837998879997887----775422237645338678870760886898279879998688789 No 50 >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Probab=29.02 E-value=25 Score=14.23 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=36.4 Q ss_pred CCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHH----HHCCCCCCCHHC-CCCHHHHHHCCCCCEEEECCCC Q ss_conf 5479999-999997199804980888899999999985----310134442001-3778998412553101201122 Q gi|254780904|r 25 GENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADCVIDSVRV-FSNLKEAIADLHFIYATTARNR 95 (268) Q Consensus 25 p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a----~~a~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 95 (268) .||||+. +=+++.-|+++|.|++... +.+...+ ..+........+ .....+++++.+.++.+.+..+ T Consensus 7 aG~VG~~~a~~l~~~~~~el~L~D~~~----~~~~G~a~DL~h~~~~~~~~~~i~~~~~~~~~~~adiVvi~ag~~~ 79 (308) T 2d4a_B 7 AGKVGMATAVMLMMRGYDDLLLIARTP----GKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGR 79 (308) T ss_dssp CSHHHHHHHHHHHHHTCSCEEEECSST----THHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCC----CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEECCCCCC T ss_conf 798999999999808999799993888----7678888866600223588619981788899689989998899888 No 51 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=27.70 E-value=26 Score=14.08 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=39.3 Q ss_pred CCCCEEEEEC-CCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 4896899942-88854799-99999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 12 AKGPVIILVD-PQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 12 ~~~~~vVLv~-p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ++--.|..+. ..+|+..| .+.|.+...|+ +++.|+|+.. -+.....+.++.+.-...+.++ T Consensus 12 ~~~KsIAVVGaS~~~~k~g~~v~~~l~~~g~-~V~pVnP~~~---------------~I~G~~~y~sl~dip~~iDlvv 74 (138) T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPNYD---------------EIEGLKCYRSVRELPKDVDVIV 74 (138) T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTTCS---------------EETTEECBSSGGGSCTTCCEEE T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHCCC-EEEEECCCCC---------------EECCEECCCCCCCCCCCCEEEE T ss_conf 1047799992169999829999999997899-8999889984---------------8835254442012787530799 No 52 >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Probab=27.66 E-value=26 Score=14.08 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=40.8 Q ss_pred EEEEECCCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCHHC-CCCHHHHHHCCCCCEE Q ss_conf 899942888547999999-9997199804980888899999999985310----134442001-3778998412553101 Q gi|254780904|r 16 VIILVDPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRV-FSNLKEAIADLHFIYA 89 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaR-a~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~~~-~~~~~~a~~~~~~~~~ 89 (268) -|..+. .||||+.+= .+..-++.+|+|++... ..+...|+.- ........+ .....+++++++.++. T Consensus 16 KV~IiG---aG~VG~~~A~~l~~~~~~el~L~Di~~----~~~~g~a~Dl~h~~~~~~~~~~v~~~~~~~~~~~adiVvi 88 (328) T 2hjr_A 16 KISIIG---AGQIGSTIALLLGQKDLGDVYMFDIIE----GVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVII 88 (328) T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSST----THHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEE T ss_pred EEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCCC----CCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEE T ss_conf 099999---798999999999679998799985899----8304685897740524799749985796688467878999 Q ss_pred EECCCCC Q ss_conf 2011223 Q gi|254780904|r 90 TTARNRN 96 (268) Q Consensus 90 ~~~~~~~ 96 (268) +.+..+. T Consensus 89 tag~~~k 95 (328) T 2hjr_A 89 TAGVPRK 95 (328) T ss_dssp CCSCCCC T ss_pred ECCCCCC T ss_conf 7136899 No 53 >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Probab=27.66 E-value=26 Score=14.08 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=42.6 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC--CCHHHHHHHH---HCCCCCCCHHCCCCHHHHHHCCC Q ss_conf 348968999428885479999999997199804980888899--9999999853---10134442001377899841255 Q gi|254780904|r 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA---NADCVIDSVRVFSNLKEAIADLH 85 (268) Q Consensus 11 ~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~--~~~~a~~~a~---~a~~~~~~~~~~~~~~~a~~~~~ 85 (268) ...+..|+.+...+..-.-+.+.++.-+|+ +++++.|.... +.+.....+. ..........++.++++++.+.+ T Consensus 158 ~~~~l~i~~~gd~~~~v~~S~~~~~~~~g~-~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aD 236 (328) T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGM-ECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD 236 (328) T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTC-EEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCC T ss_conf 513624763277765426799999997799-6999636533557669999999999876325983999967999961799 Q ss_pred CCEEEE Q ss_conf 310120 Q gi|254780904|r 86 FIYATT 91 (268) Q Consensus 86 ~~~~~~ 91 (268) .+.... T Consensus 237 vvy~~~ 242 (328) T 3grf_A 237 VVYTDS 242 (328) T ss_dssp EEEECC T ss_pred EEEEEH T ss_conf 898501 No 54 >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Probab=26.28 E-value=27 Score=13.92 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=41.5 Q ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCHHHHHHHH---HC-C-CCCCCHHCCCCHHHHHHCCCC Q ss_conf 896899942888547999999-99971998049808888999999999853---10-1-344420013778998412553 Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSA---NA-D-CVIDSVRVFSNLKEAIADLHF 86 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaR-a~~~fG~~~L~lv~P~~~~~~~~a~~~a~---~a-~-~~~~~~~~~~~~~~a~~~~~~ 86 (268) +..-|.+++ .||||+.+= ++..-++.+|+|++... +.+...++ ++ . .............+++++++. T Consensus 4 ~~~KI~IiG---aG~VG~~~a~~l~~~~l~el~L~D~~~----~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~dadi 76 (321) T 3p7m_A 4 ARKKITLVG---AGNIGGTLAHLALIKQLGDVVLFDIAQ----GMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDV 76 (321) T ss_dssp CCCEEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE T ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCCCEEEEEECCC----CCCHHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCCE T ss_conf 888799999---898999999999828998799992899----8004085776674765789847935886788278989 Q ss_pred CEEEECCCC Q ss_conf 101201122 Q gi|254780904|r 87 IYATTARNR 95 (268) Q Consensus 87 ~~~~~~~~~ 95 (268) ++.+.+..+ T Consensus 77 vvitag~~~ 85 (321) T 3p7m_A 77 VIVTAGVPR 85 (321) T ss_dssp EEECCSCCC T ss_pred EEEECCCCC T ss_conf 998067689 No 55 >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Probab=25.87 E-value=28 Score=13.88 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHH Q ss_conf 7999999999719980498088889999999 Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 (268) Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a 57 (268) ..+|+.+++..+|+.++-++.|...+.+++. T Consensus 104 ~~~A~~~Al~~lg~krIav~tPY~~~~~~~~ 134 (240) T 3ixl_A 104 MSTAVLNGLRALGVRRVALATAYIDDVNERL 134 (240) T ss_dssp HHHHHHHHHHHTTCSEEEEEESSCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEECCCCHHHHHHHH T ss_conf 7999999999809986454367648999999 No 56 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Probab=24.72 E-value=29 Score=13.74 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=28.8 Q ss_pred CCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC Q ss_conf 854799-999999971998049808888999999999853101344420013778998412553101201 Q gi|254780904|r 24 LGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268) Q Consensus 24 ~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268) .-|+|| .+++.+++||++ ++.++|.... .......++++.+..++.+..... T Consensus 131 G~G~IG~~va~~l~~fg~~-V~~~d~~~~~----------------~~~~~~~~l~~ll~~sDvv~~~~P 183 (303) T 1qp8_A 131 GLGEIGTRVGKILAALGAQ-VRGFSRTPKE----------------GPWRFTNSLEEALREARAAVCALP 183 (303) T ss_dssp SCSTHHHHHHHHHHHTTCE-EEEECSSCCC----------------SSSCCBSCSHHHHTTCSEEEECCC T ss_pred EECHHHHHHHHHHHHCCCE-EEEECCCCCC----------------CCCCCCCCHHHHHHCCCEEEECCC T ss_conf 0389999999988735977-9974488422----------------333233879999725799986167 No 57 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Probab=24.45 E-value=30 Score=13.71 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=32.3 Q ss_pred EEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC Q ss_conf 899942888547999-999999719980498088889999999998531013444200137789984125531012011 Q gi|254780904|r 16 VIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268) Q Consensus 16 ~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268) .|-++. -|+||. +|+-+.+||.. ++.++|.... ..... .. ....+.++++.++.++.+...... T Consensus 166 ~vgIiG---~G~IG~~va~~l~~fgm~-V~~~d~~~~~--~~~~~-~~-------~~~~~~~l~ell~~sDvI~l~~Pl 230 (351) T 3jtm_A 166 TIGTVG---AGRIGKLLLQRLKPFGCN-LLYHDRLQMA--PELEK-ET-------GAKFVEDLNEMLPKCDVIVINMPL 230 (351) T ss_dssp EEEEEC---CSHHHHHHHHHHGGGCCE-EEEECSSCCC--HHHHH-HH-------CCEECSCHHHHGGGCSEEEECSCC T ss_pred EEEEEC---CCCHHHHHHHHHHHCCCE-EEEECCCCCC--HHHHH-HC-------CCCCCCCHHHHHHHCCEEEEECCC T ss_conf 666777---465299999999863886-7844587776--66677-51-------960047899998549999993678 No 58 >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Probab=24.08 E-value=30 Score=13.66 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=41.4 Q ss_pred EEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCH-HCCCCHHHHHHCCCCCEE Q ss_conf 8999428885479999-999997199804980888899999999985310----1344420-013778998412553101 Q gi|254780904|r 16 VIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSV-RVFSNLKEAIADLHFIYA 89 (268) Q Consensus 16 ~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~-~~~~~~~~a~~~~~~~~~ 89 (268) -|.+++ .|+||+. +=++..-++.+|.|++... +.+...++.- ....... .......+++++++.++. T Consensus 6 KV~IiG---aG~VG~~~a~~l~~~~~~el~L~D~~~----~~a~G~a~DL~h~~~~~~~~~~~~~~~~~~~~~~adivvi 78 (322) T 1t2d_A 6 KIVLVG---SGMIGGVMATLIVQKNLGDVVLFDIVK----NMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIV 78 (322) T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSS----SHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEE T ss_pred EEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCCC----CCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCEEEEE T ss_conf 799989---798999999999718998799986899----8116698887530534688868953889789658628996 Q ss_pred EECCCC Q ss_conf 201122 Q gi|254780904|r 90 TTARNR 95 (268) Q Consensus 90 ~~~~~~ 95 (268) +.+..+ T Consensus 79 tag~~r 84 (322) T 1t2d_A 79 TAGFTK 84 (322) T ss_dssp CCSCSS T ss_pred CCCCCC T ss_conf 243233 No 59 >3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; 2.30A {Synechocystis SP} PDB: 2l06_A Probab=23.95 E-value=30 Score=13.65 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=32.6 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9987289987543899999999986316999899999999999 Q gi|254780904|r 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 (268) Q Consensus 202 ~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~ 244 (268) -+-+..|+.+-.+...+...++++|+|+.-++.|+.-..-++. T Consensus 74 e~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a 116 (147) T 3osj_A 74 PLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVS 116 (147) T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 9999987015660499999999971899999899999999999 No 60 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=22.28 E-value=33 Score=13.44 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=34.5 Q ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 13489689994288854799-99999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..++.+.|| .-|.|| +++|+.+..|++ ++.++. +++....|..-... .......+++++..+++.++ T Consensus 6 ~~~r~V~II-----GlGlIG~Sla~aL~~~g~~-V~g~D~-----~~~~~~~A~~~g~~-~~~~~~~~l~~a~~~~DLII 73 (341) T 3ktd_A 6 DISRPVCIL-----GLGLIGGSLLRDLHAANHS-VFGYNR-----SRSGAKSAVDEGFD-VSADLEATLQRAAAEDALIV 73 (341) T ss_dssp CCSSCEEEE-----CCSHHHHHHHHHHHHTTCC-EEEECS-----CHHHHHHHHHTTCC-EESCHHHHHHHHHHTTCEEE T ss_pred CCCCCEEEE-----EECHHHHHHHHHHHHCCCE-EEEEEC-----CHHHHHHHHHCCCC-CCCCCCCCHHHHCCCCCEEE T ss_conf 899818999-----7498999999999878798-999989-----99999999985998-54510056877404686899 No 61 >2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP} Probab=21.83 E-value=33 Score=13.39 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHH-------HHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999621366544433333468-888-------999999999-9998728998754389999999998631 Q gi|254780904|r 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPAT-KGE-------LLSFLDYLE-ISLEERGYFRPVEKKKKMLDDLYSIFIR 228 (268) Q Consensus 158 S~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~-~~~-------l~~~~~~l~-~~l~~~~f~~~~~~~~~~~~~lrrl~~R 228 (268) ..+...+....+||.......+........+ ..+ +..|...+. .-+-+..|+.+-.+...+...++++|+| T Consensus 13 ~~~l~~vI~AaYRQVf~~~~~~~~~~~rl~~lESqLrng~ItVreFVr~LakSe~yr~~f~~~~~~~R~iEl~~khlLGR 92 (149) T 2ky4_A 13 KAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGR 92 (149) T ss_dssp HHHHHHHHHHHHHHHTCSCCCHHHHHHHSHHHHHHHHHTSSCHHHHHHHHHHCHHHHHHHTSSSCHHHHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 99999999999999866865034421102569999876998499999999756999998702676069999999998289 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 6999899999999999 Q gi|254780904|r 229 PELMREEVFLLRGIVS 244 (268) Q Consensus 229 ~~l~~~E~~~L~Gil~ 244 (268) +.-++.|+....-++. T Consensus 93 ~p~~~~Ei~~~~~i~a 108 (149) T 2ky4_A 93 APIDQAEIRKYNQILA 108 (149) T ss_dssp CCCSHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHH T ss_conf 9999999999999999 No 62 >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Probab=20.87 E-value=35 Score=13.26 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=7.3 Q ss_pred EEEEECCCCCCH Q ss_conf 899942888547 Q gi|254780904|r 16 VIILVDPQLGEN 27 (268) Q Consensus 16 ~vVLv~p~~p~N 27 (268) .-|+++|...|= T Consensus 28 l~~i~G~NGsGK 39 (430) T 1w1w_A 28 FTSIIGPNGSGK 39 (430) T ss_dssp EEEEECSTTSSH T ss_pred EEEEECCCCCCH T ss_conf 899999999988 No 63 >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A Probab=20.11 E-value=36 Score=13.16 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=40.3 Q ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCC Q ss_conf 1348968999428885479-99999999719980498088889999999998531-013444200137789984125531 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFI 87 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268) ..-++..|..++. ..|+ -+.++++.-+|+ ++.++.|....|.+.....+.. +.........+.+..+++.+.+.+ T Consensus 151 g~l~gl~i~~vGD--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~~d~v 227 (321) T 1oth_A 151 SSLKGLTLSWIGD--GNNILHSIMMSAAKFGM-HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVL 227 (321) T ss_dssp SCCTTCEEEEESC--SSHHHHHHHTTTGGGTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE T ss_pred CCCCCCEEEEECC--CCCHHHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEE T ss_conf 8877877999768--76635699999875088-47998457768758999999999996499899973889985068879 Q ss_pred EE Q ss_conf 01 Q gi|254780904|r 88 YA 89 (268) Q Consensus 88 ~~ 89 (268) +. T Consensus 228 ~~ 229 (321) T 1oth_A 228 IT 229 (321) T ss_dssp EE T ss_pred EE T ss_conf 99 Done!