Query gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 268
No_of_seqs 177 out of 3436
Neff 7.7
Searched_HMMs 23785
Date Tue May 31 22:38:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780904.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3onp_A TRNA/RRNA methyltransfe 100.0 0 0 421.5 14.0 243 13-255 3-246 (249)
2 3ilk_A Uncharacterized tRNA/RR 100.0 0 0 380.6 18.9 237 10-255 3-242 (244)
3 3ic6_A Putative methylase fami 100.0 0 0 308.4 11.7 200 1-201 4-222 (223)
4 3kty_A Probable methyltransfer 100.0 7.4E-37 3.1E-41 250.4 12.9 165 8-172 4-172 (173)
5 1x7o_A Avirb, rRNA methyltrans 100.0 1.7E-35 7.2E-40 241.8 13.2 167 5-177 117-283 (287)
6 1gz0_A Hypothetical tRNA/RRNA 100.0 1.6E-34 6.6E-39 235.7 12.8 155 7-172 98-252 (253)
7 1v2x_A TRNA (GM18) methyltrans 100.0 1.3E-34 5.6E-39 236.2 10.8 176 9-200 17-192 (194)
8 1zjr_A TRNA (guanosine-2'-O-)- 100.0 6.8E-34 2.8E-38 231.7 12.3 178 10-202 21-198 (211)
9 2i6d_A RNA methyltransferase, 100.0 7.3E-34 3.1E-38 231.5 11.7 150 10-172 99-257 (257)
10 3nk6_A 23S rRNA methyltransfer 100.0 1.9E-33 7.8E-38 228.9 12.7 148 12-174 117-269 (277)
11 3dcm_X AdoMet, uncharacterized 100.0 3E-34 1.3E-38 233.9 4.5 154 13-173 3-188 (192)
12 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 1E-32 4.4E-37 224.2 11.8 155 8-176 110-265 (274)
13 2ha8_A TAR (HIV-1) RNA loop bi 100.0 9E-33 3.8E-37 224.7 11.1 156 6-175 18-178 (184)
14 3n4j_A RNA methyltransferase; 100.0 5.5E-32 2.3E-36 219.7 12.5 157 12-176 2-160 (165)
15 3e5y_A TRMH family RNA methylt 100.0 9.1E-32 3.8E-36 218.3 10.6 152 13-175 4-157 (160)
16 2rgw_A Aspartate carbamoyltran 84.5 1.6 6.8E-05 21.7 5.2 79 10-91 147-226 (306)
17 1vhk_A Hypothetical protein YQ 78.6 3.1 0.00013 19.9 10.2 145 16-166 83-245 (268)
18 1pvv_A Otcase, ornithine carba 78.0 3.2 0.00014 19.8 8.3 78 9-89 150-229 (315)
19 3csu_A Protein (aspartate carb 77.9 3.3 0.00014 19.7 7.1 79 9-90 149-228 (310)
20 2egv_A UPF0088 protein AQ_165; 75.8 3.7 0.00016 19.4 9.0 146 10-168 66-226 (229)
21 1vhy_A Hypothetical protein HI 74.7 4 0.00017 19.2 9.3 143 16-169 82-239 (257)
22 2yy8_A ATRM56, UPF0106 protein 73.3 4.3 0.00018 19.0 8.0 124 31-173 21-150 (201)
23 2w37_A Ornithine carbamoyltran 70.4 5 0.00021 18.6 7.5 81 10-91 172-253 (359)
24 1pzg_A LDH, lactate dehydrogen 69.0 5.3 0.00022 18.4 6.5 82 12-96 7-91 (331)
25 1dxh_A Ornithine carbamoyltran 65.6 6.2 0.00026 18.0 6.5 78 12-91 153-232 (335)
26 1k3r_A Conserved protein MT000 61.2 5.2 0.00022 18.5 2.9 32 18-49 14-49 (268)
27 3dzb_A Prephenate dehydrogenas 54.6 9.7 0.00041 16.8 8.1 117 24-148 12-153 (317)
28 1pg5_A Aspartate carbamoyltran 54.5 9.7 0.00041 16.8 5.1 75 10-90 145-220 (299)
29 3kw2_A Probable R-RNA methyltr 52.2 11 0.00044 16.5 8.4 146 17-165 80-236 (257)
30 1v6z_A Hypothetical protein TT 50.6 11 0.00047 16.4 8.1 139 16-170 73-223 (228)
31 2i6u_A Otcase, ornithine carba 48.8 12 0.0005 16.2 8.4 80 10-91 144-225 (307)
32 1ml4_A Aspartate transcarbamoy 46.8 13 0.00054 16.0 6.1 78 10-91 151-229 (308)
33 3ohw_B Phycobilisome LCM core- 43.8 14 0.0006 15.7 4.1 43 202-244 75-117 (148)
34 1hyh_A L-hicdh, L-2-hydroxyiso 41.6 15 0.00065 15.5 3.6 72 17-95 4-81 (309)
35 2o38_A Hypothetical protein; a 41.1 15 0.00063 15.6 2.6 44 202-245 23-68 (120)
36 1duv_G Octase-1, ornithine tra 40.8 16 0.00067 15.4 7.1 78 12-91 153-232 (333)
37 2qwv_A UPF0217 protein VC_A105 40.8 16 0.00067 15.4 3.8 53 114-171 148-204 (208)
38 2xed_A Putative maleate isomer 40.7 10 0.00043 16.6 1.7 31 27-57 133-163 (273)
39 1ur5_A Malate dehydrogenase; o 40.0 16 0.00069 15.3 4.0 72 17-95 5-82 (309)
40 3gvi_A Malate dehydrogenase; N 39.4 17 0.0007 15.3 4.9 77 12-95 5-87 (324)
41 2dgd_A 223AA long hypothetical 35.1 14 0.0006 15.7 1.7 22 29-50 97-118 (223)
42 3d0o_A L-LDH 1, L-lactate dehy 34.5 20 0.00084 14.8 4.2 78 12-96 4-87 (317)
43 1vlv_A Otcase, ornithine carba 33.8 20 0.00086 14.7 7.7 79 10-89 163-242 (325)
44 2o3a_A UPF0106 protein AF_0751 33.3 21 0.00088 14.7 8.6 113 31-169 24-143 (178)
45 3d6n_B Aspartate carbamoyltran 32.4 22 0.00091 14.6 7.2 15 28-42 79-93 (291)
46 1z85_A Hypothetical protein TM 32.2 22 0.00091 14.6 7.1 129 18-166 89-225 (234)
47 3ggo_A Prephenate dehydrogenas 32.0 12 0.00049 16.2 0.9 34 24-62 40-75 (314)
48 1gdh_A D-glycerate dehydrogena 32.0 22 0.00092 14.5 4.0 24 25-49 154-178 (320)
49 3fi9_A Malate dehydrogenase; s 29.9 24 0.001 14.3 3.1 67 25-95 17-88 (343)
50 2d4a_B Malate dehydrogenase; a 29.0 25 0.001 14.2 2.2 67 25-95 7-79 (308)
51 1y81_A Conserved hypothetical 27.7 26 0.0011 14.1 5.1 61 12-88 12-74 (138)
52 2hjr_A Malate dehydrogenase; m 27.7 26 0.0011 14.1 3.7 74 16-96 16-95 (328)
53 3grf_A Ornithine carbamoyltran 27.7 26 0.0011 14.1 5.7 80 11-91 158-242 (328)
54 3p7m_A Malate dehydrogenase; p 26.3 27 0.0012 13.9 4.6 76 13-95 4-85 (321)
55 3ixl_A Amdase, arylmalonate de 25.9 28 0.0012 13.9 1.9 31 27-57 104-134 (240)
56 1qp8_A Formate dehydrogenase; 24.7 29 0.0012 13.7 5.2 52 24-92 131-183 (303)
57 3jtm_A Formate dehydrogenase, 24.4 30 0.0012 13.7 4.3 64 16-93 166-230 (351)
58 1t2d_A LDH-P, L-lactate dehydr 24.1 30 0.0013 13.7 4.6 73 16-95 6-84 (322)
59 3osj_A Phycobilisome LCM core- 23.9 30 0.0013 13.6 6.0 43 202-244 74-116 (147)
60 3ktd_A Prephenate dehydrogenas 22.3 33 0.0014 13.4 10.5 67 10-88 6-73 (341)
61 2ky4_A Phycobilisome linker po 21.8 33 0.0014 13.4 5.9 87 158-244 13-108 (149)
62 1w1w_A Structural maintenance 20.9 35 0.0015 13.3 3.3 12 16-27 28-39 (430)
63 1oth_A Protein (ornithine tran 20.1 36 0.0015 13.2 6.4 77 10-89 151-229 (321)
No 1
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=0 Score=421.46 Aligned_cols=243 Identities=40% Similarity=0.597 Sum_probs=225.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
..|+||||+||+|+|||||+|+|+|||+++|+||+|+|+++++++.+.|+|+.+.+..+.++.+++++..++....+++.
T Consensus 3 ~~p~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~~~~~~~~~a~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (249)
T 3onp_A 3 IEPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTA 82 (249)
T ss_dssp CCCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCSEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHEECEEEEECCHHHHHHHHCCHHHHHH
T ss_conf 99889993899987499999999982899899918988999889998847873220211364459999763000132222
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001232220476787341016889999999999962
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268)
+.+........+.............++++|||||+|++||+++++++||++++|||++.|+||||||||+|+||||+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNls~AvaIvlyEl~r~~ 162 (249)
T 3onp_A 83 RGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQH 162 (249)
T ss_dssp SCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHHHHHC-
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHH
T ss_conf 31357864100113467778765047765999947877888788740251898348999886159999999999999984
Q ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 13665444-33333468888999999999999872899875438999999999863169998999999999999998410
Q gi|254780904|r 173 IVSSEKNV-KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 (268)
Q Consensus 173 ~~~~~~~~-~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~ 251 (268)
........ .....+|++++++.|++++.+.|+++|||.|++++++++.+|||||+|+.||++|+++|||++++++|+++
T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~l~~~~f~~~~~~~~~~~~~lr~l~~r~~l~~~E~~~L~Gi~~~i~~~l~ 242 (249)
T 3onp_A 163 DETPPEVIDMARVDFASGLEVEKLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLK 242 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 15787654310012110889999999999999976999984112799999999997379999999999999999999974
Q ss_pred CCCC
Q ss_conf 3421
Q gi|254780904|r 252 QSSR 255 (268)
Q Consensus 252 ~~~~ 255 (268)
+...
T Consensus 243 ~~~~ 246 (249)
T 3onp_A 243 QENL 246 (249)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 6576
No 2
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=380.63 Aligned_cols=237 Identities=30% Similarity=0.465 Sum_probs=208.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
+-.+++.||||+||+|||||||+|+|+|||+++|+||+|++ +++++.++|+|+.+++..+.++.+++++..++..+++
T Consensus 3 ~~~~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~~--~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (244)
T 3ilk_A 3 AMLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG 80 (244)
T ss_dssp CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSC--CSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE
T ss_pred CCHHCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC--CCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 00539899994898867699999999980999799938999--8979999747541123757998406666666778889
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
++.+.+........+.+... .....++++|||||+|++||++++++.||.+++|||++.|+||||||||+|+||||+
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~---~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~ 157 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAE---KVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 157 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHH---HHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 98764225644368787422---320368864886166668997687615560698558999832328999999999999
Q ss_pred HHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 96213665---444333334688889999999999998728998754389999999998631699989999999999999
Q gi|254780904|r 170 ENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 (268)
Q Consensus 170 r~~~~~~~---~~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~l 246 (268)
++...... ........+|++++++.|++++.+.|+.+||+++ +.++++|||+|.|+.||++|+++||||++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~lr~~~~r~~lt~~E~~~L~Gi~~~l 233 (244)
T 3ilk_A 158 MAFLVQNNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAV 233 (244)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHHHHTCCCS----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 987400445555432123567899999999999999986588782----8999999999973799999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 984103421
Q gi|254780904|r 247 DKFSRQSSR 255 (268)
Q Consensus 247 ~~~~~~~~~ 255 (268)
+|+++..++
T Consensus 234 ~k~~~~~~~ 242 (244)
T 3ilk_A 234 EKRIDLTKE 242 (244)
T ss_dssp HHHHHHHC-
T ss_pred HHHHCCCCC
T ss_conf 987313225
No 3
>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=0 Score=308.41 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=175.8
Q ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC-------------------CCHHHHHHH
Q ss_conf 9752255321348968999428885479999999997199804980888899-------------------999999985
Q gi|254780904|r 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------------------PSEKARSSS 61 (268)
Q Consensus 1 ~t~~~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~-------------------~~~~a~~~a 61 (268)
|+..-+.+.+...++.|||++|++|+|||||+|+|++||+++|+||+|+|++ .++++++.|
T Consensus 4 ~~~~~p~~~~~l~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (223)
T 3ic6_A 4 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILA 83 (223)
T ss_dssp ---CCCCCCGGGGGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHH
T ss_pred CCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 32358897123448699991798877499999999974998799974676664210122223554323567658899986
Q ss_pred HHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 31013444200137789984125531012011223430341242035666553115881699994588842431000123
Q gi|254780904|r 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268)
+|+.+++..+.++.+++++++++.....++.+.........................+++|||||+|++||+++++++||
T Consensus 84 ~ga~~~l~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d 163 (223)
T 3ic6_A 84 SGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACN 163 (223)
T ss_dssp GGGHHHHHTCEEESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCS
T ss_pred HCCHHHHCCEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 36487628237861499987531211111111135544201321000145555304777179976666687978988630
Q ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 222047678734101688999999999996213665444333334688889999999999
Q gi|254780904|r 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 (268)
Q Consensus 142 ~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~ 201 (268)
.+++|||++.++|||||||++|+|||++|+....... ......+|++++++.||+||++
T Consensus 164 ~~v~IPm~~~~~SLNvS~A~aIvlyE~~rq~~~~~~~-~~~~~~~a~~~~~~~~~~~~e~ 222 (223)
T 3ic6_A 164 RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTH-LQQEDHAATHEQIKGMLAHMES 222 (223)
T ss_dssp EEECCCCCTTCCCCCHHHHHHHHHHHHHHTTTSCCCC-CCC--CCCCHHHHHHHHTTCCC
T ss_pred HCEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 0111158999973279999999999999842687655-6545789999999999999842
No 4
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=7.4e-37 Score=250.35 Aligned_cols=165 Identities=29% Similarity=0.359 Sum_probs=140.5
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC--CHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC
Q ss_conf 3213489689994288854799999999971998049808888999--99999985310134442001377899841255
Q gi|254780904|r 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 (268)
Q Consensus 8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~--~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~ 85 (268)
|....+++.|||++||+|+|+|+|+|+|++||+++++|++|++++. ++++.+.+.|+.+.......+..++.+.....
T Consensus 4 ~~~~~~~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (173)
T 3kty_A 4 MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT 83 (173)
T ss_dssp HHHHHTTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS
T ss_pred HHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCHHHHHHHHCC
T ss_conf 12413865999927989874999999999829988999899777778878898733876045444210332999985202
Q ss_pred CCEEEECCCCCCCEEEECCCC--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH
Q ss_conf 310120112234303412420--356665531158816999945888424310001232220476787341016889999
Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268)
....+....+........... ............++++||||+|++||++++++.||++++|||.+.++|||||+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~~~~~SLNvs~AaaI 163 (173)
T 3kty_A 84 LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQL 163 (173)
T ss_dssp EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHH
T ss_pred CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHH
T ss_conf 22100000122334323223433222333332146762899777567889899974797999418989982678999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999962
Q gi|254780904|r 164 MVWECMENS 172 (268)
Q Consensus 164 vlYEl~r~~ 172 (268)
+||||+|+.
T Consensus 164 ~lyElrra~ 172 (173)
T 3kty_A 164 AAWELRYAL 172 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999975
No 5
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=1.7e-35 Score=241.77 Aligned_cols=167 Identities=18% Similarity=0.121 Sum_probs=125.8
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCC
Q ss_conf 25532134896899942888547999999999719980498088889999999998531013444200137789984125
Q gi|254780904|r 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 (268)
Q Consensus 5 ~~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~ 84 (268)
+..+......++|||++++||||+|+|+|+|.+||++.+++.+++++++++++++.++|+.+.+....+.+ +.++...+
T Consensus 117 l~~l~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~~~~~~~~~ras~Ga~~~~~~~~~~~-~~~~~~~l 195 (287)
T 1x7o_A 117 LDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPS-PGEVMDWV 195 (287)
T ss_dssp GGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESS-HHHHHHHH
T ss_pred HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCHHHHCCEEEEEH-HHHHHHHH
T ss_conf 65740458977999966877655899999888559876999730344444300000102132110489810-46777765
Q ss_pred CCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 53101201122343034124203566655311588169999458884243100012322204767873410168899999
Q gi|254780904|r 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 (268)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIv 164 (268)
.... ..................+......++++||||+|++|||++.++.||+.++|||.+.++|||||+|++|+
T Consensus 196 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ 270 (287)
T 1x7o_A 196 EARR-----AAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAI 270 (287)
T ss_dssp HHHH-----HHTCCCEEEEECTTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHH
T ss_pred HHHH-----CCCCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEHHHHHHHHH
T ss_conf 5554-----04875687412000243211120368629998888878899999858989998999999712299999999
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999996213665
Q gi|254780904|r 165 VWECMENSIVSSE 177 (268)
Q Consensus 165 lYEl~r~~~~~~~ 177 (268)
|||++||+.....
T Consensus 271 lyE~~RqR~~~~~ 283 (287)
T 1x7o_A 271 LYEAVRQRISGRT 283 (287)
T ss_dssp HHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999987853899
No 6
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=1.6e-34 Score=235.69 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=125.9
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCC
Q ss_conf 53213489689994288854799999999971998049808888999999999853101344420013778998412553
Q gi|254780904|r 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 (268)
Q Consensus 7 ~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~ 86 (268)
.+.+.++..+|||++++||+|+|+|+|+|.+||++.++++.+.++++++++.+.|+|+.+.+.... +.++++++..+..
T Consensus 98 ~~~~~~~~~~vvLd~i~dp~NlGaiiRta~afG~~~vil~~~~~~~~~~~~~r~s~G~~~~~~~~~-~~~l~~~l~~l~~ 176 (253)
T 1gz0_A 98 LIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIR-VTNLARTMRMLQE 176 (253)
T ss_dssp HHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEE-ESCHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCHHCCCCCC-CCCHHHHHHHHHH
T ss_conf 984668986999955788507999999999729986830467667652422343258611289501-6999999998643
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
. ........ .............++++||||+|++|||++.++.||.+++|||.+.++|||||+|++|+||
T Consensus 177 ~---------~~~~~~~~-~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNva~A~aI~ly 246 (253)
T 1gz0_A 177 E---------NIWIVGTA-GEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 246 (253)
T ss_dssp T---------TCEEEEEC-TTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHH
T ss_pred C---------CCCCCCCC-CCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 0---------12221223-2345531121047976999878777889999985998999789899950619999999999
Q ss_pred HHHHHH
Q ss_conf 999962
Q gi|254780904|r 167 ECMENS 172 (268)
Q Consensus 167 El~r~~ 172 (268)
|++||.
T Consensus 247 e~~rqr 252 (253)
T 1gz0_A 247 EAVRQR 252 (253)
T ss_dssp HHHHHT
T ss_pred HHHHCC
T ss_conf 999764
No 7
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=1.3e-34 Score=236.17 Aligned_cols=176 Identities=18% Similarity=0.262 Sum_probs=124.8
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
...+..++|||+++++|+|+|+|+|+|++||+.++++++|.+++++.+ .++++........++.++.+++..+..
T Consensus 17 ~~~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lk~-- 91 (194)
T 1v2x_A 17 RRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN---ETSGGSHKWVYLRVHPDLHEAFRFLKE-- 91 (194)
T ss_dssp TTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC---SSCSSGGGTSEEEEESSHHHHHHHHHH--
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHH---HHCCCCCCEEEEEEECCHHHHHHHHHH--
T ss_conf 568999899996798846599999999974996430358866771344---310344312469995589999999997--
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268)
.......................++++||||+|++||++++++.||.+|+|||.+.++|||||+|++|+|||+
T Consensus 92 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~ 164 (194)
T 1v2x_A 92 -------RGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEA 164 (194)
T ss_dssp -------TTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHH
T ss_pred -------CCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHH
T ss_conf -------5982542012222454011026888289976767889999998589799958999986326999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99621366544433333468888999999999
Q gi|254780904|r 169 MENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 (268)
Q Consensus 169 ~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~ 200 (268)
+||.....-... +..+.++...++.+|.
T Consensus 165 ~Rq~~~~g~~~~----~~~~~~~~~~~l~~~~ 192 (194)
T 1v2x_A 165 QRQRLKAGLYDR----PRLDPELYQKVLADWL 192 (194)
T ss_dssp HHHHHHHTGGGS----CCSCHHHHHHHHHHC-
T ss_pred HHHHHHCCCCCC----CCCCHHHHHHHHHHHH
T ss_conf 997764579888----7899999999999997
No 8
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=6.8e-34 Score=231.71 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
..+...+|||+++++|+|+|+|+|+|++||++.+++++|.+.. ++...+.++|+...+....+. ++.+++..+...
T Consensus 21 ~~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~-~~~~~~~s~gs~~~~~~~~~~-~~~~~l~~~~~~-- 96 (211)
T 1zjr_A 21 KRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVD-NPVQKLLEFKNR-- 96 (211)
T ss_dssp TCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECS-CHHHHHHHHHHT--
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHC--
T ss_conf 4899989999589884379999999998589889994898886-277888852441035799967-889998765404--
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
......................++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+.
T Consensus 97 -------~~~i~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~ 169 (211)
T 1zjr_A 97 -------GFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQ 169 (211)
T ss_dssp -------TCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHH
T ss_pred -------CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHH
T ss_conf -------8448874033333222124566306999767667899999985798999779999970049999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 962136654443333346888899999999999
Q gi|254780904|r 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 (268)
Q Consensus 170 r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~ 202 (268)
||.....-.. .+..+++|.+.++..|..-
T Consensus 170 Rqr~~~~~~~----~~~l~~~e~~~ll~~~~~~ 198 (211)
T 1zjr_A 170 RQREEKGMYS----RPSLSEEEIQKILKKWAYE 198 (211)
T ss_dssp HHHHHTTTTS----SCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC----CCCCCHHHHHHHHHHHCCH
T ss_conf 8687458988----8897999999999976048
No 9
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=7.3e-34 Score=231.52 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=118.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----
Q ss_conf 1348968999428885479999999997199804980888899999999985310134442001377899841255----
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH---- 85 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~---- 85 (268)
....++++||+++|||||+|+|+|+|++||++.++++.++++++++++++.|+|+.+.+....+ .++.+++..+.
T Consensus 99 ~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~~v~~~~~-~~~~~~l~~l~~~~~ 177 (257)
T 2i6d_A 99 PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPL-KNTVDTLAYFRRQGI 177 (257)
T ss_dssp CCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEEC-SCHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCEECCCCCC-CHHHHHHHHHHHCCC
T ss_conf 5668849999579884579999999998098602000145565776663211575011022333-125678999853683
Q ss_pred CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC-----CCCCCCCHHHHHH
Q ss_conf 31012011223430341242035666553115881699994588842431000123222047-----6787341016889
Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-----VNPLFPSLNISQA 160 (268)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IP-----t~~~~~SLNLS~A 160 (268)
.++++..... .........+.++++||||+|++|||++.++.||..++|| |.+..+|||||+|
T Consensus 178 ~i~~~~~~~~------------~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g~veSLNva~A 245 (257)
T 2i6d_A 178 PVYGAFLDGQ------------SLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIA 245 (257)
T ss_dssp CEEEEEEEEE------------ETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHH
T ss_pred EEEEECCCCC------------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHH
T ss_conf 5998302455------------3100001267886599987876788999998488689989987788999873109999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999962
Q gi|254780904|r 161 VLLMVWECMENS 172 (268)
Q Consensus 161 vaIvlYEl~r~~ 172 (268)
++|+|||++||+
T Consensus 246 ~aI~lyE~~Rq~ 257 (257)
T 2i6d_A 246 TAILCSEWRRRS 257 (257)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998569
No 10
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.9e-33 Score=228.94 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=117.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC-CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC----C
Q ss_conf 489689994288854799999999971998049808888-99999999985310134442001377899841255----3
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----F 86 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~-~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~----~ 86 (268)
..+.++|||++|||||+|+|+|+|.+||++.++++.+.+ +++++++.+.|+|+.+.+... +.++.+++..+. .
T Consensus 117 ~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~RaS~Ga~~~~p~~--~~~~~~~~~~l~~~~~~ 194 (277)
T 3nk6_A 117 RGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV--LADREEAVSFLRDNDIA 194 (277)
T ss_dssp HCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEE--ECCHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCEE--ECCCCHHHHHHHHCCCE
T ss_conf 4986999947887745899999999708857996257855234731243256633421202--20320346777635861
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
++++.. .............++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus 195 i~~~~~-------------~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~g~~eSLNvsvA~~I~ly 261 (277)
T 3nk6_A 195 LMVLDT-------------DGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALH 261 (277)
T ss_dssp EEEECT-------------TCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHH
T ss_pred EEEEEE-------------CCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 799984-------------3764400011478888999877667888999973894999729899972159999999999
Q ss_pred HHHHHHCC
Q ss_conf 99996213
Q gi|254780904|r 167 ECMENSIV 174 (268)
Q Consensus 167 El~r~~~~ 174 (268)
|+.|+...
T Consensus 262 E~~rq~~a 269 (277)
T 3nk6_A 262 ERSARNFA 269 (277)
T ss_dssp HTHHHHHH
T ss_pred HHHHHCCC
T ss_conf 99971313
No 11
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=100.00 E-value=3e-34 Score=233.94 Aligned_cols=154 Identities=19% Similarity=0.367 Sum_probs=124.7
Q ss_pred CCCEEEEEC-CCC--C----------CHHHHHHHHHHHCCCCEEEECCCCCC-----------CCCHHHHHHHHHCCCCC
Q ss_conf 896899942-888--5----------47999999999719980498088889-----------99999999853101344
Q gi|254780904|r 13 KGPVIILVD-PQL--G----------ENIGMVARAMWNFNLTQLRLVNPRDG-----------WPSEKARSSSANADCVI 68 (268)
Q Consensus 13 ~~~~vVLv~-p~~--p----------~NiGaiaRa~~~fG~~~L~lv~P~~~-----------~~~~~a~~~a~~a~~~~ 68 (268)
++.-|+||+ |.. + .|||.|||+|+|||+++|+||+|+++ |++.++.+.+.++.+++
T Consensus 3 ~~~~~~Lvh~Pv~~~~g~~~~t~~tnldihdIARamkn~Gl~~l~lV~P~~~q~~l~~~~~~~W~~~~a~~~a~~a~dvL 82 (192)
T 3dcm_X 3 EKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESL 82 (192)
T ss_dssp TSEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHH
T ss_pred CCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
T ss_conf 65699997040037788788640446547999999986799727996762677888988875077704555088989998
Q ss_pred CCHHCCCCHHHHHHCCC-------CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 42001377899841255-------31012011223430341242035666553115881699994588842431000123
Q gi|254780904|r 69 DSVRVFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268)
Q Consensus 69 ~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268)
+++++++++++|+++|. .+++|+.+.+.. ...+.+..... ....++++|||| |++||+||++++||
T Consensus 83 ~~akV~~sLeeAl~d~~~~~g~s~~vvaTsar~r~~---~~~~~e~~~~l---~~~~~~valvFG-E~~GLtneeL~~cd 155 (192)
T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKREN---DISFEEGRRII---IETEKPVLILLG-TGWGLPDEILEISD 155 (192)
T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSS---CBCHHHHHHHH---HHCCSCEEEEEC-CTTCCCHHHHTTCS
T ss_pred HHCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCCHHHHHHHH---HHCCCCEEEEEC-CCCCCCHHHHHHCC
T ss_conf 218786889999987887528862686045665789---98999999998---733881899934-77799999998539
Q ss_pred CEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2220-4767873410168899999999999621
Q gi|254780904|r 142 AIIS-FPVNPLFPSLNISQAVLLMVWECMENSI 173 (268)
Q Consensus 142 ~~v~-IPt~~~~~SLNLS~AvaIvlYEl~r~~~ 173 (268)
+++. ||++++|+||||||||+|+||+++....
T Consensus 156 ~iL~~Ip~~~~y~sLNvs~AvaIildrl~g~~~ 188 (192)
T 3dcm_X 156 YVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY 188 (192)
T ss_dssp EEBCCTTTTSSCCCCCHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 778635799999830799999999999858301
No 12
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=1e-32 Score=224.24 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=118.5
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCC-HHHHHHCCCC
Q ss_conf 321348968999428885479999999997199804980888899999999985310134442001377-8998412553
Q gi|254780904|r 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEAIADLHF 86 (268)
Q Consensus 8 l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~-~~~a~~~~~~ 86 (268)
......+.++||++++||+|+|+|+|+|++||++.+++.+ .++++++++.+.|+|+.+.+........ ..+......+
T Consensus 110 ~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~~-~~~~~~~~~~r~s~ga~~~~~~~~~~~~~~~~~~~~~~~ 188 (274)
T 1ipa_A 110 YRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-GVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNL 188 (274)
T ss_dssp CCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES-CCCTTCHHHHHHTTTGGGTSCEEEECHHHHHHHHHHTTC
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCCCCCCEECCCCCEEEEEEEEEECHHHHHHHHHHCCE
T ss_conf 4346897899996897862799999999974987788448-723346400003543168998886113778887651230
Q ss_pred CEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10120112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
.+..+... ...........++++||||+|++||+++.++.||..++|||.+.++|||||+|++|+||
T Consensus 189 ~i~~~~~~-------------~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvsvA~~I~ly 255 (274)
T 1ipa_A 189 PLVATTPH-------------AEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 (274)
T ss_dssp CEEEECTT-------------CSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHH
T ss_pred EECCCCCC-------------CCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 00012333-------------34311001467773999916767889999974897999769999970139999999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999621366
Q gi|254780904|r 167 ECMENSIVSS 176 (268)
Q Consensus 167 El~r~~~~~~ 176 (268)
|++||.....
T Consensus 256 E~~Rqr~~~~ 265 (274)
T 1ipa_A 256 EALRQRLLRD 265 (274)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHH
T ss_conf 9998488765
No 13
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=9e-33 Score=224.66 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=120.5
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHC-CCCHHHHHHCC
Q ss_conf 55321348968999428885479999999997199804980888899999999985310134442001-37789984125
Q gi|254780904|r 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADL 84 (268)
Q Consensus 6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~-~~~~~~a~~~~ 84 (268)
..+......++|||+++++|+|+|+|+|+|++||++.+ ++.|.++++++.+.+.++|+.+.+....+ +.++.+++...
T Consensus 18 ~~l~~~~~~l~vvld~i~dP~NlG~IiRta~afGv~~v-iv~~~~~~~~~~~~~~s~g~~~~i~~~~~~~~~~~~~l~~~ 96 (184)
T 2ha8_A 18 ARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVL-VVGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQK 96 (184)
T ss_dssp --CCCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEE-EESCGGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHH
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE-ECCCCCCCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 98356679879998178880379999999998199779-50764456874777640553102021134514689999998
Q ss_pred ----CCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf ----5310120112234303412420356665531158816999945888424310001232220476787341016889
Q gi|254780904|r 85 ----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268)
Q Consensus 85 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268)
..+++++.... ...+......++++||||+|++|||+++++.||.+++|||.+.++|||||+|
T Consensus 97 k~~g~~vv~~~~~~~-------------~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNvs~A 163 (184)
T 2ha8_A 97 KTEGYTIIGVEQTAK-------------SLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVS 163 (184)
T ss_dssp HHTTCEEEEECCCTT-------------CEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHH
T ss_pred HHCCCEEEEECCCCC-------------CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHH
T ss_conf 755968987313245-------------5333211146885688676557889999985897999729699970259999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999962136
Q gi|254780904|r 161 VLLMVWECMENSIVS 175 (268)
Q Consensus 161 vaIvlYEl~r~~~~~ 175 (268)
++|+|||++|+....
T Consensus 164 ~aI~lye~~rq~~~~ 178 (184)
T 2ha8_A 164 GALLIWEYTRQQLLS 178 (184)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999834300
No 14
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=99.98 E-value=5.5e-32 Score=219.70 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=118.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 48968999428885479999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
+..+.|||++|++|+|||+|+|+|++||+ ++++|.|++..+..+....+.++.............+.............
T Consensus 2 ~~~l~ivL~~p~~P~NlGaI~Rta~afGv-~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 3n4j_A 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQP 80 (165)
T ss_dssp -CCEEEEEESCCCHHHHHHHHHHHHHHTC-EEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCC-CEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96369999689999819999999997699-78941686540251899988373365321121003888889998733564
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC--CEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123--2220476787341016889999999999
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd--~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
.. .. ................++++||||+|++|||+++++.|| .++.|||.+.++|||||+|++|+|||++
T Consensus 81 ~~------i~-~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~ 153 (165)
T 3n4j_A 81 AR------LF-ALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAW 153 (165)
T ss_dssp TT------EE-EECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred EE------EE-EECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHH
T ss_conf 27------88-631322103666325766169973566789999998588763998049999986589999999999999
Q ss_pred HHHCCCC
Q ss_conf 9621366
Q gi|254780904|r 170 ENSIVSS 176 (268)
Q Consensus 170 r~~~~~~ 176 (268)
||.+...
T Consensus 154 RQ~~~~g 160 (165)
T 3n4j_A 154 RQLGYPG 160 (165)
T ss_dssp HHHTCTT
T ss_pred HHCCCCC
T ss_conf 8049997
No 15
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305}
Probab=99.97 E-value=9.1e-32 Score=218.30 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=107.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
..+.|||++|++|+|||+|+|+|++||++.++++.+.+++.+.+..+.+++...... .......++..........
T Consensus 4 ~~~~ivL~~p~~P~NiGaI~Rta~afGi~~viv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 79 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQ-MRVHRDWDAFVAAEAPDPA--- 79 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHT-CEEESSHHHHHHHHCCCGG---
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE-EEEECCHHHHHHHHHCCCC---
T ss_conf 757999948999983999999999849957852699864026899987416258764-5663218889988750583---
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC--CCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001--2322204767873410168899999999999
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~--cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268)
....................+++||||+|++|||+++++. ||++++|||.+.++|||||+|++|+|||++|
T Consensus 80 -------~~~~~~~~~~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~~~~~SLNvsvAaaI~lyE~~R 152 (160)
T 3e5y_A 80 -------RMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWR 152 (160)
T ss_dssp -------GEEEECSTTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred -------EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf -------6999730123322112456523999804778899899986303232334799998716699999999999997
Q ss_pred HHCCC
Q ss_conf 62136
Q gi|254780904|r 171 NSIVS 175 (268)
Q Consensus 171 ~~~~~ 175 (268)
|....
T Consensus 153 q~~~~ 157 (160)
T 3e5y_A 153 QAGFE 157 (160)
T ss_dssp HTTTT
T ss_pred CCCCC
T ss_conf 61899
No 16
>2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, pyrimidine biosynthesis, thermostability; 2.80A {Methanococcus jannaschii} PDB: 3e2p_A
Probab=84.54 E-value=1.6 Score=21.68 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 13489689994288-85479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQ-LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~-~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..-++..|+++..- +-.++-+.+.++..||...++++.|....+.+.....+... -.......+.+++..+.+.+.
T Consensus 147 g~l~glki~~vGD~~~~~v~~S~~~~~~~~~~~~v~~~~P~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~aDvv~ 223 (306)
T 2rgw_A 147 GRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAK---NIKFYEKESLDDLDDDIDVLY 223 (306)
T ss_dssp SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHT---TCCEEEESSGGGCCTTCSEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHC---CCEEEEEHHHHHHHHHHEEEE
T ss_conf 88558889998056435317989999998489706986854754756777777623---743675002554311110685
Q ss_pred EEE
Q ss_conf 120
Q gi|254780904|r 89 ATT 91 (268)
Q Consensus 89 ~~~ 91 (268)
.+.
T Consensus 224 ~~~ 226 (306)
T 2rgw_A 224 VTR 226 (306)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 224
No 17
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=78.62 E-value=3.1 Score=19.88 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=77.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CC-----------HHHHHHH-HHCCCCCCCHHCCCCHHHH
Q ss_conf 8999428885479999999997199804980888899---99-----------9999985-3101344420013778998
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PS-----------EKARSSS-ANADCVIDSVRVFSNLKEA 80 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~---~~-----------~~a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268)
+.+..-+-.|.++--+++-+.-.|++.++++...-.. .+ ..+..++ ......+.......++.++
T Consensus 83 i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~~ 162 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH
T ss_conf 57998421675288899887832725678101030122122205564099999999999997199987679743699999
Q ss_pred HHCCCCCEEEECC-CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE--EECCCCCCCCCHHH
Q ss_conf 4125531012011-22343034124203566655311588169999458884243100012322--20476787341016
Q gi|254780904|r 81 IADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNI 157 (268)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~--v~IPt~~~~~SLNL 157 (268)
+............ ...... ................+++.|+.|+|+ |.|.+|++..... ..+-..+ ..|=.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g~~~v~LG~--~ILR~ 236 (268)
T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQ---GEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGP--RILRT 236 (268)
T ss_dssp HHHGGGSSEEEEECC-----------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCS--SCCCT
T ss_pred HHHCCCCCCEEEECCCCCCC---CCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCC--CCCHH
T ss_conf 97286679489974200234---424678888764347981999983898-8999999999978999977899--81457
Q ss_pred HHHHHHHHH
Q ss_conf 889999999
Q gi|254780904|r 158 SQAVLLMVW 166 (268)
Q Consensus 158 S~AvaIvlY 166 (268)
..|+...+-
T Consensus 237 ETA~i~als 245 (268)
T 1vhk_A 237 ETAPLYALS 245 (268)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 749999999
No 18
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=78.01 E-value=3.2 Score=19.77 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=58.2
Q ss_pred HCCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCC
Q ss_conf 21348968999428885479-99999999719980498088889999999998531-01344420013778998412553
Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHF 86 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~ 86 (268)
...-++..|+++.+ ..|+ -+.+.++.-||+ +++++.|....+.+.....+.. +........++.++.+++.+.+.
T Consensus 150 ~g~~~~l~i~~vGd--~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDv 226 (315)
T 1pvv_A 150 KGTIKGVKVVYVGD--GNNVAHSLMIAGTKLGA-DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADV 226 (315)
T ss_dssp HSCCTTCEEEEESC--CCHHHHHHHHHHHHTTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE
T ss_pred HCCCCCCEEEEECC--CCCHHHHHHHHHHHHCC-CEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCE
T ss_conf 28756877999678--75315689999998418-7899889866886899999999998719859997699998557999
Q ss_pred CEE
Q ss_conf 101
Q gi|254780904|r 87 IYA 89 (268)
Q Consensus 87 ~~~ 89 (268)
+..
T Consensus 227 vyt 229 (315)
T 1pvv_A 227 IYT 229 (315)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 954
No 19
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=77.90 E-value=3.3 Score=19.75 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=55.7
Q ss_pred HCCCCCCEEEEECCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCC
Q ss_conf 2134896899942888-547999999999719980498088889999999998531013444200137789984125531
Q gi|254780904|r 9 QNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~-p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268)
...-.+..|+.+..-. ..++-+.+.++..||...++++.|....+.+.....+.... ....++.+.++++.+.+.+
T Consensus 149 ~g~l~g~kv~~vGd~~~~~v~~S~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~---~~~~~~~d~~~a~~~aDvv 225 (310)
T 3csu_A 149 QGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG---IAWSLHSSIEEVMAEVDIL 225 (310)
T ss_dssp HSCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTT---CCEEECSCGGGTTTTCSEE
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC---CCCCCCHHHHHHCCCCCEE
T ss_conf 2776898799984687771478999999961637389848841378389999998618---8653330677642478756
Q ss_pred EEE
Q ss_conf 012
Q gi|254780904|r 88 YAT 90 (268)
Q Consensus 88 ~~~ 90 (268)
..+
T Consensus 226 y~~ 228 (310)
T 3csu_A 226 YMT 228 (310)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 420
No 20
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=75.82 E-value=3.7 Score=19.39 Aligned_cols=146 Identities=11% Similarity=0.038 Sum_probs=74.1
Q ss_pred CCCCCCEEEEE-C-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH------------HHHHH-HCCCCCCCHHCC
Q ss_conf 13489689994-2-888547999999999719980498088889999999------------99853-101344420013
Q gi|254780904|r 10 NSAKGPVIILV-D-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA------------RSSSA-NADCVIDSVRVF 74 (268)
Q Consensus 10 ~~~~~~~vVLv-~-p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a------------~~~a~-~a~~~~~~~~~~ 74 (268)
.....+.|.|. . |..+...=.+++-+.-.|++.++++.-.-.....+. ..++. .....+......
T Consensus 66 ~~~~~~~i~l~~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~ 145 (229)
T 2egv_A 66 TKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKP 145 (229)
T ss_dssp CCCCSSEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCC
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 67998742899832110457999999988818229998743302101377877899999999998612156778753245
Q ss_pred CCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 77899841255310120112234303412420356665531158816999945888424310001232220476787341
Q gi|254780904|r 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 (268)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~S 154 (268)
.++.+++.............. ...........+++.++.|+|+ |.|.+|++.....=..+.+=.-..
T Consensus 146 ~~l~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I 212 (229)
T 2egv_A 146 VRLSDLIPESEENIILDNFYE------------GVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPYT 212 (229)
T ss_dssp EEGGGCCCCSSEEEEECTTSC------------CBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSSC
T ss_pred HHHHHHHHHCCCCHHHHHHHH------------CCCCHHHHHCCCCCEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 679999853431111122331------------0352123320254158980788-999999999998799897669982
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 01688999999999
Q gi|254780904|r 155 LNISQAVLLMVWEC 168 (268)
Q Consensus 155 LNLS~AvaIvlYEl 168 (268)
|=.-+|+-.++.-+
T Consensus 213 LR~ETA~i~als~l 226 (229)
T 2egv_A 213 LRTETAVVSIVSIL 226 (229)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 51775999999998
No 21
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=74.71 E-value=4 Score=19.21 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=79.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCC--CCCH-H-----------HHHHHH-HCCCCCCCHHCCCCHHHH
Q ss_conf 899942888547999999999719980498088889--9999-9-----------999853-101344420013778998
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSE-K-----------ARSSSA-NADCVIDSVRVFSNLKEA 80 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~--~~~~-~-----------a~~~a~-~a~~~~~~~~~~~~~~~a 80 (268)
+.++.-+--+.+.-.+++-+.-.|++.++++.-.-. .++. + +..++. .....+.......++.++
T Consensus 82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~ 161 (257)
T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 161 (257)
T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 89998402338899999999974876899997102335465667887699999999999986599767865410038999
Q ss_pred HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf 41255310120112234303412420356665531158816999945888424310001232220476787341016889
Q gi|254780904|r 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268)
....+............. ..........+++.+++|+|+ |.|++|++.....=-.+.+=.-..|=..+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~vsLG~~ILR~ETA 230 (257)
T 1vhy_A 162 CAENDGALKLNLHPRAHY----------SIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRVLRTETA 230 (257)
T ss_dssp HTCCSSCEEEEECTTCCC----------BGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHH
T ss_pred HHHCCCCCCHHHHHHHHH----------HHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 861544421011024444----------566665303686589985777-889899999998798783268981668879
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780904|r 161 VLLMVWECM 169 (268)
Q Consensus 161 vaIvlYEl~ 169 (268)
+-.++--+.
T Consensus 231 ~i~als~~~ 239 (257)
T 1vhy_A 231 SLAAISALQ 239 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 22
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=73.27 E-value=4.3 Score=18.99 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=68.7
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHH----HH--HHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECC
Q ss_conf 9999997199804980888899999999----98--53101344420013778998412553101201122343034124
Q gi|254780904|r 31 VARAMWNFNLTQLRLVNPRDGWPSEKAR----SS--SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104 (268)
Q Consensus 31 iaRa~~~fG~~~L~lv~P~~~~~~~~a~----~~--a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 104 (268)
++=++-+||.+.++|.+.. ++++. .. .-|+.+. +....++...++... +..-..+-.-...
T Consensus 21 V~LtARAfGA~~i~l~~~~----D~~v~etv~~V~~rwGG~F~---ve~~~~~~~~ik~~~------G~vVHLTMYG~~i 87 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEE----DEKVKESVEDVVKRWGGPFF---IEFNRNWRKVMKEFT------GVKVHLTMYGLHV 87 (201)
T ss_dssp HHHHHHHTTCSEEEESSSC----CHHHHHHHHHHHHHHCSCCB---CCBCSCHHHHHHHCC------SEEEEEEEEEEEH
T ss_pred HHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHHHCCCCEE---EEECCCHHHHHHHCC------CEEEEEECCCCCC
T ss_conf 8899987168758974788----73699999999985299669---997468899998659------9799984478760
Q ss_pred CCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 203566655311588169999458884243100012322204767873410168899999999999621
Q gi|254780904|r 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 (268)
Q Consensus 105 ~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~ 173 (268)
.+....+......+.++.+|.|.|. ++.+.-++|||-++|--.|.-+. .|.||+|-.|+....
T Consensus 88 ~dvi~~Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgNQPHSEV----AALAIFLDrl~~G~e 150 (201)
T 2yy8_A 88 DDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSEV----AALAVLLDRLLEGKG 150 (201)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCHH----HHHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHHH----HHHHHHHHHHHCCCH
T ss_conf 2677988752556885899978885--99899833675255478872899----999999998707705
No 23
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=70.37 E-value=5 Score=18.58 Aligned_cols=81 Identities=11% Similarity=0.229 Sum_probs=52.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 134896899942888547999999999719980498088889999999998531-0134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..-.+..|+++..-+..=.-+.+.++.-||+ .++++.|....|.+.....+.. +...-....++.++++++++.+.+.
T Consensus 172 g~l~~~~i~~vgd~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~eal~~aDvIy 250 (359)
T 2w37_A 172 GKLQGLTLTFMGDGRNNVANSLLVTGAILGV-NIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVY 250 (359)
T ss_dssp SCCTTCEEEEESCTTSHHHHHHHHHHHHHTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEE
T ss_conf 9635755999868865715568999864699-899957833488688999999999973986999789999974699999
Q ss_pred EEE
Q ss_conf 120
Q gi|254780904|r 89 ATT 91 (268)
Q Consensus 89 ~~~ 91 (268)
...
T Consensus 251 t~~ 253 (359)
T 2w37_A 251 TDV 253 (359)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 754
No 24
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 1sov_A 1sow_A* 3czm_A*
Probab=69.04 E-value=5.3 Score=18.40 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCH--HCCCCHHHHHHCCCCCE
Q ss_conf 4896899942888547999-99999971998049808888999999999853101344420--01377899841255310
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADLHFIY 88 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~--~~~~~~~~a~~~~~~~~ 88 (268)
++..-|.++. .||||+ +|-+++.-++.+|+|++...+...-.+.=.+..+....... ....+..+++++++.++
T Consensus 7 ~k~~KI~IiG---aG~VG~~~A~~l~~~~l~el~LiDi~~~~~~g~alDL~h~~~~~~~~~~i~~~~~~~~~~~~adivv 83 (331)
T 1pzg_A 7 QRRKKVAMIG---SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp SCCCEEEEEC---CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CCCCCEEEEC---CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCEEEE
T ss_conf 7899389989---7989999999997189987999908998028899988670113799669981798377616782899
Q ss_pred EEECCCCC
Q ss_conf 12011223
Q gi|254780904|r 89 ATTARNRN 96 (268)
Q Consensus 89 ~~~~~~~~ 96 (268)
.+.+..+.
T Consensus 84 itag~~rk 91 (331)
T 1pzg_A 84 VTAGLTKV 91 (331)
T ss_dssp ECCSCSSC
T ss_pred EECCCCCC
T ss_conf 70322125
No 25
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=65.59 E-value=6.2 Score=17.97 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 489689994288854799-9999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
.....++.+..-+ .|+. +.++++.-||+ +++++.|....+.+.....+.. +...-....++.++++++.+.+.+..
T Consensus 153 ~~~~~~~~~~~~~-~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvv~t 230 (335)
T 1dxh_A 153 LHDISYAYLGDAR-NNMGNSLLLIGAKLGM-DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHT 230 (335)
T ss_dssp GGGCEEEEESCCS-SHHHHHHHHHHHHTTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEE
T ss_conf 3685799856887-6514799999997798-6999668545787899999999999749989998499998367988987
Q ss_pred EE
Q ss_conf 20
Q gi|254780904|r 90 TT 91 (268)
Q Consensus 90 ~~ 91 (268)
..
T Consensus 231 ~~ 232 (335)
T 1dxh_A 231 DV 232 (335)
T ss_dssp CC
T ss_pred EE
T ss_conf 77
No 26
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2
Probab=61.22 E-value=5.2 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.5
Q ss_pred EEECCCCC----CHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99428885----479999999997199804980888
Q gi|254780904|r 18 ILVDPQLG----ENIGMVARAMWNFNLTQLRLVNPR 49 (268)
Q Consensus 18 VLv~p~~p----~NiGaiaRa~~~fG~~~L~lv~P~ 49 (268)
||.+.|++ .-+|-|||+|.-|+++.+++.+..
T Consensus 14 il~n~~s~e~~T~~~gqIARAaaIF~VdEIvVydD~ 49 (268)
T 1k3r_A 14 LTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDD 49 (268)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 956689989999999999999982267679998189
No 27
>3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311}
Probab=54.61 E-value=9.7 Score=16.77 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCHHH-HHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC------
Q ss_conf 854799-999999971998-049808888999999999853101344420013778998412553101201122------
Q gi|254780904|r 24 LGENIG-MVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR------ 95 (268)
Q Consensus 24 ~p~NiG-aiaRa~~~fG~~-~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 95 (268)
..|++| +++|+++..|.. .++.+++ +++....|..... ...+..+++++..+++.++..+.-..
T Consensus 12 G~GlmG~Sia~al~~~~~~~~V~~~D~-----~~~~~~~a~~~g~---id~~~~~~~~~~~~~DlVIla~P~~~~~~vl~ 83 (317)
T 3dzb_A 12 GLGLIGGSLALGIKRDHPDYEILGYNR-----SDYSRNIALERGI---VDRATGDFKEFAPLADVIILAVPIKQTMAYLK 83 (317)
T ss_dssp CCSHHHHHHHHHHHTTCTTSEEEEECS-----CHHHHHHHHHTCS---CSEEESCHHHHGGGCSEEECCSCHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHCCCCCEEEEEEC-----CHHHHHHHHHCCC---CCCCCCCHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 218899999999996099988999969-----9999999998699---74003889886145898999168126678899
Q ss_pred ---C--C-CEE-EECCCCH---HHHHHHHHCCCCCEEE-----EEECCCCCCCCCCCCCCCCE--EECCC
Q ss_conf ---3--4-303-4124203---5666553115881699-----99458884243100012322--20476
Q gi|254780904|r 96 ---N--N-FKS-VLAPKEA---AIVLNERIFSGQNVGI-----IFGRERWGLTNEEIALSNAI--ISFPV 148 (268)
Q Consensus 96 ---~--~-~~~-~~~~~~~---~~~~~~~~~~~~~val-----VFG~E~~GLs~eel~~cd~~--v~IPt 148 (268)
. . ... ....... .............+-+ +||+|..|..+....+.+.- +-+|.
T Consensus 84 ~l~~~~~~~~~ivtDv~SvK~~~~~~~~~~~~~~~~~fV~~HPmaG~e~~G~~~a~~~lf~~~~~i~~p~ 153 (317)
T 3dzb_A 84 ELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPMAGSHKSGAIAADVTLFENAYYIFTPT 153 (317)
T ss_dssp HHTTSCCCTTCEEECCCSCCHHHHHHHHHHHTTSSCEECEEEECBCC------CCCTTTTTTSEEEEECC
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCEEEECCC
T ss_conf 9875550467599860565623899999865668851103665546455677676155445843773378
No 28
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=54.52 E-value=9.7 Score=16.76 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 1348968999428-885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p-~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
....+..|+.+.. .+...+.+.++++.-||...++++.|....+..+....+. .....+.+..+++.+.+.+.
T Consensus 145 g~~~~l~i~~~gd~~~~~v~~S~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~e~~~~aDvvy 218 (299)
T 1pg5_A 145 NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELN------YPVKEVENPFEVINEVDVLY 218 (299)
T ss_dssp SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCC------SCEEEESCGGGTGGGCSEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHC------CCCCCCCCHHHHHCCCCEEE
T ss_conf 885556378851776105778899999874886311258301354577765406------87433569888707876687
Q ss_pred EE
Q ss_conf 12
Q gi|254780904|r 89 AT 90 (268)
Q Consensus 89 ~~ 90 (268)
.+
T Consensus 219 ~~ 220 (299)
T 1pg5_A 219 VT 220 (299)
T ss_dssp EE
T ss_pred EC
T ss_conf 50
No 29
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=52.21 E-value=11 Score=16.53 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=72.0
Q ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CC-H----HHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCC
Q ss_conf 99942-8885479999999997199804980888899---99-9----9999853-101344420013778998412553
Q gi|254780904|r 17 IILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PS-E----KARSSSA-NADCVIDSVRVFSNLKEAIADLHF 86 (268)
Q Consensus 17 vVLv~-p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~---~~-~----~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~ 86 (268)
.++.. |..+.-.-.+++-+.-+|+++++++...-.. .. + .+..++. .....+..+....++.+++.+...
T Consensus 80 ~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~~ 159 (257)
T 3kw2_A 80 TIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPK 159 (257)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCC
T ss_conf 99972444410799998787761844899511232033203788999999999997275538677155489999974701
Q ss_pred CEEE-ECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 1012-011223430341242035666553115881699994588842431000123222047678734101688999999
Q gi|254780904|r 87 IYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 (268)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvl 165 (268)
.... ............. .............+++.++.|+|+ |.|..|++.....=-.|.+=.-..|=..+|+-..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~l~~~g~~~vsLG~~ILRtETA~i~al 236 (257)
T 3kw2_A 160 AAVRLIAYVDEAVRAEIT--QGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESRLRTETAGLVAC 236 (257)
T ss_dssp TSEEEEECCCTTCC-------CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHH
T ss_pred CCCCEECHHHHHHHHHHH--HHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 242120001320002233--200121134236881799988998-99999999999879989867998255786999999
No 30
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=50.56 E-value=11 Score=16.37 Aligned_cols=139 Identities=21% Similarity=0.161 Sum_probs=71.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC--CCC-HH-------HHHHHH-HCCCCCCCHHCCCCHHHHHHC
Q ss_conf 8999428885479999999997199804980888-89--999-99-------999853-101344420013778998412
Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG--WPS-EK-------ARSSSA-NADCVIDSVRVFSNLKEAIAD 83 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~--~~~-~~-------a~~~a~-~a~~~~~~~~~~~~~~~a~~~ 83 (268)
+.+..-+-.+.+.--+++-|.-+|++.++++.-. +. ..+ .+ +..++. .....+.......++.++...
T Consensus 73 i~l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~ 152 (228)
T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 152 (228)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC
T ss_pred EEEEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 58997302807899999998843117999970034421222011021378999999996499446621476477888765
Q ss_pred CCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH
Q ss_conf 55310120112234303412420356665531158816999945888424310001232220476787341016889999
Q gi|254780904|r 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268)
.... ....... ..........+++.|+.|+|+ |.|.+|++.....=-.+.+=.-..|=.-+|+ |
T Consensus 153 ~~~~-------------~~~~~~~-~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~~~~~~~~~v~LG~~ILR~ETA~-i 216 (228)
T 1v6z_A 153 AQGL-------------VAHVGAT-ARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRILRAETAA-L 216 (228)
T ss_dssp SSEE-------------EECTTCC-CCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSCCCHHHHH-H
T ss_pred HHHH-------------HHHCCCC-CCCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHH-H
T ss_conf 4443-------------3200222-232312356760699967987-8899999999978988976799824578599-9
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780904|r 164 MVWECME 170 (268)
Q Consensus 164 vlYEl~r 170 (268)
++-.+.+
T Consensus 217 ~alsi~~ 223 (228)
T 1v6z_A 217 ALLALCT 223 (228)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999999
No 31
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=48.83 E-value=12 Score=16.20 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=55.2
Q ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCC
Q ss_conf 13489689994288854799-9999999719980498088889999999998531-013444200137789984125531
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFI 87 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268)
..-++..|++++. ..+++. +.+..+.-||+ ++.++.|....+.+.....+.. ............+.++++.+.+.+
T Consensus 144 g~l~gl~i~~vGd-~~~~~~~s~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvv 221 (307)
T 2i6u_A 144 GALRGLRLSYFGD-GANNMAHSLLLGGVTAGI-HVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL 221 (307)
T ss_dssp SCCTTCEEEEESC-TTSHHHHHHHHHHHHTTC-EEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE
T ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHHHCCC-EEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCEE
T ss_conf 8978988999778-887715079999986698-58725872348888999999988886188518964688886489889
Q ss_pred EEEE
Q ss_conf 0120
Q gi|254780904|r 88 YATT 91 (268)
Q Consensus 88 ~~~~ 91 (268)
....
T Consensus 222 ~~~~ 225 (307)
T 2i6u_A 222 VTDT 225 (307)
T ss_dssp EECC
T ss_pred EEEE
T ss_conf 9752
No 32
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=46.82 E-value=13 Score=16.00 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=52.2
Q ss_pred CCCCCCEEEEECCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 134896899942888-5479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~-p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..-++..|+++..-. ..+.-+.+.++..||+ +++++.|....+.++....+... ......+.++++++.+.+.+.
T Consensus 151 g~l~glki~~vGd~~~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~---~~~~~~~~d~~ea~~~aDvv~ 226 (308)
T 1ml4_A 151 GRIDGLKIGLLGDLKYGRTVHSLAEALTFYDV-ELYLISPELLRMPRHIVEELREK---GMKVVETTTLEDVIGKLDVLY 226 (308)
T ss_dssp SCSSSEEEEEESCTTTCHHHHHHHHHGGGSCE-EEEEECCGGGCCCHHHHHHHHHT---TCCEEEESCTHHHHTTCSEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCHHHCCCHHHHHHHHHC---CCCEEECCCHHHHHCCCCEEE
T ss_conf 88357779864587644128889999987698-39997964754878899999971---983021289899630575220
Q ss_pred EEE
Q ss_conf 120
Q gi|254780904|r 89 ATT 91 (268)
Q Consensus 89 ~~~ 91 (268)
.+.
T Consensus 227 ~~~ 229 (308)
T 1ml4_A 227 VTR 229 (308)
T ss_dssp ECC
T ss_pred CCE
T ss_conf 220
No 33
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; 2.70A {Synechocystis SP}
Probab=43.84 E-value=14 Score=15.72 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9987289987543899999999986316999899999999999
Q gi|254780904|r 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 (268)
Q Consensus 202 ~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~ 244 (268)
-+-+..|+.+-.+...+...++++|+|+..++.|+.-..-++.
T Consensus 75 e~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a 117 (148)
T 3ohw_B 75 ELYMKEFYAPYPNTKVIEMGTKHFLGRAPLNQKEIQQYNQILA 117 (148)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9999987026662599999999970899999799999999999
No 34
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=41.60 E-value=15 Score=15.50 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHH--HHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCHHCCCCHHHHHHCCCCCEEE
Q ss_conf 9994288854799999--99997199804980888899999999985310----13444200137789984125531012
Q gi|254780904|r 17 IILVDPQLGENIGMVA--RAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRVFSNLKEAIADLHFIYAT 90 (268)
Q Consensus 17 vVLv~p~~p~NiGaia--Ra~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (268)
|..+. .||||+.+ +.+..=-+++|+|++.. .+++...++.- ........+.....+++++++.++.+
T Consensus 4 I~IiG---aG~VG~~~a~~l~~~~~~~el~LiDi~----~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivvit 76 (309)
T 1hyh_A 4 IGIIG---LGNVGAAVAHGLIAQGVADDYVFIDAN----EAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIST 76 (309)
T ss_dssp EEEEC---CSHHHHHHHHHHHHHTCCSEEEEECSS----HHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEEC
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCCEEEEECCC----CCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCEEEEE
T ss_conf 99989---698999999999846999979998589----97258899998756755789847942877885688668996
Q ss_pred ECCCC
Q ss_conf 01122
Q gi|254780904|r 91 TARNR 95 (268)
Q Consensus 91 ~~~~~ 95 (268)
.+..+
T Consensus 77 ag~pr 81 (309)
T 1hyh_A 77 LGNIK 81 (309)
T ss_dssp CSCGG
T ss_pred ECCCC
T ss_conf 10133
No 35
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=41.12 E-value=15 Score=15.58 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHHHCCCCCCHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9987289987543--8999999999863169998999999999999
Q gi|254780904|r 202 SLEERGYFRPVEK--KKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 (268)
Q Consensus 202 ~l~~~~f~~~~~~--~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~~ 245 (268)
+..+.||..+++. +..+...|+.++.+..+|+.|+..+.|+=+.
T Consensus 23 vf~DlG~~daeel~~K~~L~~~I~~~i~~~glTQ~eaA~~lGisq~ 68 (120)
T 2o38_A 23 VFADLGMPDAEERQTKLRLAYALNAVIDRARLSQAAAAARLGINQP 68 (120)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 1011598968999999999999999999869967556555088889
No 36
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=40.83 E-value=16 Score=15.43 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 489689994288854799-999999971998049808888999999999853-101344420013778998412553101
Q gi|254780904|r 12 AKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
..+..|+.+..-+ .|+. +.++.+..||+ ++.++.|....|.+.....+. .+...-.....+.++++++.+.+.+..
T Consensus 153 ~~~~~i~~~~~~~-~~v~~s~~~~~~~~g~-~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt 230 (333)
T 1duv_G 153 FNEMTLVYAGDAR-NNMGNSMLEAAALTGL-DLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYT 230 (333)
T ss_dssp GGGCEEEEESCTT-SHHHHHHHHHHHHHCC-EEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEE
T ss_conf 5550588617654-3201258888876397-1799637655876789999999987629867986389999616983003
Q ss_pred EE
Q ss_conf 20
Q gi|254780904|r 90 TT 91 (268)
Q Consensus 90 ~~ 91 (268)
..
T Consensus 231 ~~ 232 (333)
T 1duv_G 231 DV 232 (333)
T ss_dssp CC
T ss_pred EE
T ss_conf 46
No 37
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=40.83 E-value=16 Score=15.42 Aligned_cols=53 Identities=23% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCE----EECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 311588169999458884243100012322----2047678734101688999999999996
Q gi|254780904|r 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 114 ~~~~~~~valVFG~E~~GLs~eel~~cd~~----v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
........++|+| -..|++.++.+.-..+ +++ .-.+|=-+|+++|+-||+=++
T Consensus 148 ~~~~~~~~~FILg-Dh~~l~~~e~~~L~~~~~~~iSl----Gp~~L~a~hcI~ivh~~LDr~ 204 (208)
T 2qwv_A 148 DIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp TSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHHHHHHHHHHHHCC
T ss_conf 2568999879970-89998978999998718823754----708888778999999987202
No 38
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=40.67 E-value=10 Score=16.61 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 7999999999719980498088889999999
Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 (268)
Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a 57 (268)
-.+|+++++..+|+.++-|+.|...+.++..
T Consensus 133 ~~~Ai~~AL~~lgakrIallTPY~~~v~~~~ 163 (273)
T 2xed_A 133 SAGALVEGLRALDAQRVALVTPYMRPLAEKV 163 (273)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
T ss_conf 8999999999649985799747978999999
No 39
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=40.00 E-value=16 Score=15.34 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCC----CCCCHHC-CCCHHHHHHCCCCCEEE
Q ss_conf 99942888547999-999999719980498088889999999998531013----4442001-37789984125531012
Q gi|254780904|r 17 IILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVRV-FSNLKEAIADLHFIYAT 90 (268)
Q Consensus 17 vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~----~~~~~~~-~~~~~~a~~~~~~~~~~ 90 (268)
|.+++ .||||+ ++-++..-++.+|.|++... +.+...++.-.+ ......+ .....+..++++.++.+
T Consensus 5 V~iiG---aG~VG~~~a~~l~~~~l~el~L~D~~~----~~~~g~a~DL~~~~~~~~~~~~v~~~~~~~~~~dadivvit 77 (309)
T 1ur5_A 5 ISIIG---AGFVGSTTAHWLAAKELGDIVLLDIVE----GVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVT 77 (309)
T ss_dssp EEEEC---CSHHHHHHHHHHHHTTCSEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred EEEEC---CCHHHHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 99999---798999999999848998799980898----71153898887221126888679715998996899999986
Q ss_pred ECCCC
Q ss_conf 01122
Q gi|254780904|r 91 TARNR 95 (268)
Q Consensus 91 ~~~~~ 95 (268)
.+..+
T Consensus 78 ag~~~ 82 (309)
T 1ur5_A 78 SGAPR 82 (309)
T ss_dssp CCC--
T ss_pred CCCCC
T ss_conf 89889
No 40
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=39.38 E-value=17 Score=15.28 Aligned_cols=77 Identities=17% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCC-----CCCCHHCCCCHHHHHHCCC
Q ss_conf 48968999428885479999-99999719980498088889999999998531013-----4442001377899841255
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-----VIDSVRVFSNLKEAIADLH 85 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~-----~~~~~~~~~~~~~a~~~~~ 85 (268)
...+-|..+. .|+||+. +=++..-++.+|+|++.. .+++...++.-.+ ............+++++++
T Consensus 5 m~~~KV~IiG---aG~VG~~~a~~l~~~~l~el~L~Di~----~~~a~g~a~DL~~~~~~~~~~~~~~~~~~~~~~~~ad 77 (324)
T 3gvi_A 5 MARNKIALIG---SGMIGGTLAHLAGLKELGDVVLFDIA----EGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD 77 (324)
T ss_dssp -CCCEEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSS----SSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCS
T ss_pred CCCCEEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCC----CCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHCCCE
T ss_conf 8888799989---79899999999963999889998489----9855038675443353678886581688678855871
Q ss_pred CCEEEECCCC
Q ss_conf 3101201122
Q gi|254780904|r 86 FIYATTARNR 95 (268)
Q Consensus 86 ~~~~~~~~~~ 95 (268)
.++.+.+..+
T Consensus 78 ivvitag~~~ 87 (324)
T 3gvi_A 78 VVIVTAGVPR 87 (324)
T ss_dssp EEEECCSCCC
T ss_pred EEEEECCCCC
T ss_conf 8998436789
No 41
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=35.09 E-value=14 Score=15.70 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9999999971998049808888
Q gi|254780904|r 29 GMVARAMWNFNLTQLRLVNPRD 50 (268)
Q Consensus 29 GaiaRa~~~fG~~~L~lv~P~~ 50 (268)
+|+.++++.+|+.++-++.|..
T Consensus 97 ~A~~~AL~~lg~krIav~TPY~ 118 (223)
T 2dgd_A 97 ESVYELLKKLNVRKLWIGTPYI 118 (223)
T ss_dssp HHHHHHHHHTTCCEEEEEESSC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999972998079967886
No 42
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=34.45 E-value=20 Score=14.79 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCCEEEEECCCCCCHHHHHH--HHHHHCCCCEEEECCCCCCCCCHHHHHHHHH---C-CCCCCCHHCCCCHHHHHHCCC
Q ss_conf 489689994288854799999--9999719980498088889999999998531---0-134442001377899841255
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVA--RAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---A-DCVIDSVRVFSNLKEAIADLH 85 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaia--Ra~~~fG~~~L~lv~P~~~~~~~~a~~~a~~---a-~~~~~~~~~~~~~~~a~~~~~ 85 (268)
-++.-|..+. .||||+.+ +.+.+=-+++|+|++.. .+++...++. + ........+.....+++++++
T Consensus 4 ~k~~KV~IiG---aG~VG~~~a~~l~~~~l~~el~L~Di~----~~~a~g~a~DL~~~~~~~~~~~~i~~~~~~~~~daD 76 (317)
T 3d0o_A 4 FKGNKVVLIG---NGAVGSSYAFSLVNQSIVDELVIIDLD----TEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDAD 76 (317)
T ss_dssp CCCCEEEEEC---CSHHHHHHHHHHHHHCSCSEEEEECSC----HHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCS
T ss_pred CCCCEEEEEC---CCHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCC
T ss_conf 7798099989---788999999999707998869999178----975434889886125147997699369789957998
Q ss_pred CCEEEECCCCC
Q ss_conf 31012011223
Q gi|254780904|r 86 FIYATTARNRN 96 (268)
Q Consensus 86 ~~~~~~~~~~~ 96 (268)
.++.+.+..+.
T Consensus 77 vvvitaG~~rk 87 (317)
T 3d0o_A 77 LVVICAGAAQK 87 (317)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
T ss_conf 99983688899
No 43
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=33.78 E-value=20 Score=14.73 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 134896899942888547999999999719980498088889999999998531-0134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..-++..|+++..-...=.-+.+.++.-||+ +++++.|....+.+.....+.. +...........++++++.+++.+.
T Consensus 163 g~l~gl~i~~vGd~~~~~~~s~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvy 241 (325)
T 1vlv_A 163 GRLKGVKVVFMGDTRNNVATSLMIACAKMGM-NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVY 241 (325)
T ss_dssp SCSTTCEEEEESCTTSHHHHHHHHHHHHTTC-EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEE
T ss_pred CCCCCCCCEEECCCCCCEEEHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEE
T ss_conf 9745677257668755375319999997598-499973843388889999876554423764201069999970698664
Q ss_pred E
Q ss_conf 1
Q gi|254780904|r 89 A 89 (268)
Q Consensus 89 ~ 89 (268)
.
T Consensus 242 t 242 (325)
T 1vlv_A 242 T 242 (325)
T ss_dssp E
T ss_pred E
T ss_conf 0
No 44
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=33.31 E-value=21 Score=14.68 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHH------HHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEEC-
Q ss_conf 999999719980498088889999999998------5310134442001377899841255310120112234303412-
Q gi|254780904|r 31 VARAMWNFNLTQLRLVNPRDGWPSEKARSS------SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA- 103 (268)
Q Consensus 31 iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~------a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 103 (268)
++=++-+||.+.++|-. + +++.... .-|+.+.... .++...++... ......+
T Consensus 24 v~LtARAfGA~~i~l~~--~---D~~v~etv~~V~~rwGG~F~v~~----~~w~~~ik~~~-----------G~vVHLTM 83 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDT--E---DKSVFESVRDVVERWGGDFFIKA----VSWKKLLREFD-----------GLKVHLTM 83 (178)
T ss_dssp HHHHHHHTTCSEEEESS--C---CHHHHHHHHHHHHHHCSCCEEEE----CCHHHHHHHCC-----------SEEEEEEE
T ss_pred HHHHHHHHCCCEEEECC--C---CHHHHHHHHHHHHHCCCCEEEEE----CCHHHHHHHCC-----------CEEEEECC
T ss_conf 88999871697689717--7---73688989999972299328996----48999987559-----------98999657
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 104 ~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
--..............++.+|.|.|. .+.+.-++|||-++|--.|.-+. .|.||+|-.|+
T Consensus 84 YG~~i~~~i~~Ir~~~~ilvVVGaeK--VP~evYe~ADyNVaVgNQPHSEV----AALAiFLDrl~ 143 (178)
T 2o3a_A 84 YGIPLPQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSEV----AALAVFLDRVL 143 (178)
T ss_dssp EEEEHHHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCHH----HHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHHH----HHHHHHHHHHC
T ss_conf 89864677766304696699988884--99899732674256379882899----99999999862
No 45
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=32.39 E-value=22 Score=14.58 Aligned_cols=15 Identities=0% Similarity=-0.102 Sum_probs=6.3
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 999999999719980
Q gi|254780904|r 28 IGMVARAMWNFNLTQ 42 (268)
Q Consensus 28 iGaiaRa~~~fG~~~ 42 (268)
+-=.+|.+..++++-
T Consensus 79 ~~Dt~~vls~~~~d~ 93 (291)
T 3d6n_B 79 FFDTLKTFEGLGFDY 93 (291)
T ss_dssp HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 889999753246438
No 46
>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8}
Probab=32.20 E-value=22 Score=14.56 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=59.4
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC--CHH-----HHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 994288854799999999971998049808888999--999-----9998531-01344420013778998412553101
Q gi|254780904|r 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEK-----ARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~--~~~-----a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
+...+--+...-.+++-|.-.|++.++++...-... ..+ +..++.- ....+.......++
T Consensus 89 l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~~k~~r~~~i~~~A~eQsgr~~lP~I~~~~~~------------ 156 (234)
T 1z85_A 89 VVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKL------------ 156 (234)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEEECCSC------------
T ss_pred EEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHC------------
T ss_conf 99712532037999987652699999971234422000388999999986753188658876645414------------
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
........... ............+++.|+.|+|+ |.|.+|++....-+ .|.+=.-..|=..+|+-+.+-
T Consensus 157 ----~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~E~~~~~~~~-~~v~LG~~ILR~ETA~i~als 225 (234)
T 1z85_A 157 ----EFSGNVITLDL--DASQNLLDANLEGSITVVVGPEG-GFSEKERELLRSST-TIVSLGKKILRFETAAILTVG 225 (234)
T ss_dssp ----CCCSEEEEECC-----CCCSSSCCCSSEEEEECCTT-CCCHHHHHHHHHHS-EEC------CCHHHHHHHHHH
T ss_pred ----HHCCCCEEEEC--CHHHHHCCCCCCCCEEEEECCCC-CCCHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf ----00288366412--01221000023684499989988-99999999998499-898789982336729999999
No 47
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=32.05 E-value=12 Score=16.24 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=23.4
Q ss_pred CCCHHH-HHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHH
Q ss_conf 854799-999999971998-049808888999999999853
Q gi|254780904|r 24 LGENIG-MVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSA 62 (268)
Q Consensus 24 ~p~NiG-aiaRa~~~fG~~-~L~lv~P~~~~~~~~a~~~a~ 62 (268)
.-|++| ++||+....|+. +++.++ .+++....+.
T Consensus 40 GlG~mG~siA~~L~~~g~~~~V~g~D-----~~~~~~~~a~ 75 (314)
T 3ggo_A 40 GVGFMGGSFAKSLRRSGFKGKIYGYD-----INPESISKAV 75 (314)
T ss_dssp SCSHHHHHHHHHHHHTTCCSEEEEEC-----SCHHHHHHHH
T ss_pred EECHHHHHHHHHHHCCCCCCEEEEEE-----CCHHHHHHHH
T ss_conf 20889999999998069998899997-----9999999999
No 48
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=31.99 E-value=22 Score=14.54 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=11.4
Q ss_pred CCHHHH-HHHHHHHCCCCEEEECCCC
Q ss_conf 547999-9999997199804980888
Q gi|254780904|r 25 GENIGM-VARAMWNFNLTQLRLVNPR 49 (268)
Q Consensus 25 p~NiGa-iaRa~~~fG~~~L~lv~P~ 49 (268)
-||||. ++|-+++||+. ++..+|.
T Consensus 154 ~G~IG~~va~~l~~fg~~-V~~~~~~ 178 (320)
T 1gdh_A 154 FGSIGQALAKRAQGFDMD-IDYFDTH 178 (320)
T ss_dssp CSHHHHHHHHHHHTTTCE-EEEECSS
T ss_pred ECHHHHHHHHHHHHCCCE-EEEECCC
T ss_conf 666999999998742876-8886687
No 49
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Porphyromonas gingivalis atcc 33277}
Probab=29.86 E-value=24 Score=14.32 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHHH---HCCCCCCCHHCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf 54799999-99997199-8049808888999999999853---101344420013778998412553101201122
Q gi|254780904|r 25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 (268)
Q Consensus 25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a~---~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (268)
.||||+.+ -++...++ ++|+|++.. .+.+...++ ++........+.....+++++++.++.+.+..+
T Consensus 17 aG~VG~~~a~~l~~~~l~~el~L~D~~----~~~~~G~a~DL~~~~~~~~~~~~~~~~~~~l~daDiVVitAG~~r 88 (343)
T 3fi9_A 17 AGMIGSNMAQTAAMMRLTPNLCLYDPF----AVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPR 88 (343)
T ss_dssp TSHHHHHHHHHHHHTTCCSCEEEECSC----HHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC---
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCC----CCCCCHHHHHHHHCCCCCCCEEEECCHHHHHCCCCEEEECCCCCC
T ss_conf 867999999999837998879997887----775422237645338678870760886898279879998688789
No 50
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=29.02 E-value=25 Score=14.23 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHH----HHCCCCCCCHHC-CCCHHHHHHCCCCCEEEECCCC
Q ss_conf 5479999-999997199804980888899999999985----310134442001-3778998412553101201122
Q gi|254780904|r 25 GENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADCVIDSVRV-FSNLKEAIADLHFIYATTARNR 95 (268)
Q Consensus 25 p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a----~~a~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 95 (268)
.||||+. +=+++.-|+++|.|++... +.+...+ ..+........+ .....+++++.+.++.+.+..+
T Consensus 7 aG~VG~~~a~~l~~~~~~el~L~D~~~----~~~~G~a~DL~h~~~~~~~~~~i~~~~~~~~~~~adiVvi~ag~~~ 79 (308)
T 2d4a_B 7 AGKVGMATAVMLMMRGYDDLLLIARTP----GKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CSHHHHHHHHHHHHHTCSCEEEECSST----THHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCC----CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEECCCCCC
T ss_conf 798999999999808999799993888----7678888866600223588619981788899689989998899888
No 51
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=27.70 E-value=26 Score=14.08 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=39.3
Q ss_pred CCCCEEEEEC-CCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 4896899942-88854799-99999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 12 AKGPVIILVD-PQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 12 ~~~~~vVLv~-p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
++--.|..+. ..+|+..| .+.|.+...|+ +++.|+|+.. -+.....+.++.+.-...+.++
T Consensus 12 ~~~KsIAVVGaS~~~~k~g~~v~~~l~~~g~-~V~pVnP~~~---------------~I~G~~~y~sl~dip~~iDlvv 74 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPNYD---------------EIEGLKCYRSVRELPKDVDVIV 74 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTTCS---------------EETTEECBSSGGGSCTTCCEEE
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHCCC-EEEEECCCCC---------------EECCEECCCCCCCCCCCCEEEE
T ss_conf 1047799992169999829999999997899-8999889984---------------8835254442012787530799
No 52
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=27.66 E-value=26 Score=14.08 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCHHC-CCCHHHHHHCCCCCEE
Q ss_conf 899942888547999999-9997199804980888899999999985310----134442001-3778998412553101
Q gi|254780904|r 16 VIILVDPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRV-FSNLKEAIADLHFIYA 89 (268)
Q Consensus 16 ~vVLv~p~~p~NiGaiaR-a~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~~~-~~~~~~a~~~~~~~~~ 89 (268)
-|..+. .||||+.+= .+..-++.+|+|++... ..+...|+.- ........+ .....+++++++.++.
T Consensus 16 KV~IiG---aG~VG~~~A~~l~~~~~~el~L~Di~~----~~~~g~a~Dl~h~~~~~~~~~~v~~~~~~~~~~~adiVvi 88 (328)
T 2hjr_A 16 KISIIG---AGQIGSTIALLLGQKDLGDVYMFDIIE----GVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVII 88 (328)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSST----THHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred EEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCCC----CCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCEEEE
T ss_conf 099999---798999999999679998799985899----8304685897740524799749985796688467878999
Q ss_pred EECCCCC
Q ss_conf 2011223
Q gi|254780904|r 90 TTARNRN 96 (268)
Q Consensus 90 ~~~~~~~ 96 (268)
+.+..+.
T Consensus 89 tag~~~k 95 (328)
T 2hjr_A 89 TAGVPRK 95 (328)
T ss_dssp CCSCCCC
T ss_pred ECCCCCC
T ss_conf 7136899
No 53
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=27.66 E-value=26 Score=14.08 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC--CCHHHHHHHH---HCCCCCCCHHCCCCHHHHHHCCC
Q ss_conf 348968999428885479999999997199804980888899--9999999853---10134442001377899841255
Q gi|254780904|r 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA---NADCVIDSVRVFSNLKEAIADLH 85 (268)
Q Consensus 11 ~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~--~~~~a~~~a~---~a~~~~~~~~~~~~~~~a~~~~~ 85 (268)
...+..|+.+...+..-.-+.+.++.-+|+ +++++.|.... +.+.....+. ..........++.++++++.+.+
T Consensus 158 ~~~~l~i~~~gd~~~~v~~S~~~~~~~~g~-~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aD 236 (328)
T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGM-ECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD 236 (328)
T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTC-EEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCC
T ss_conf 513624763277765426799999997799-6999636533557669999999999876325983999967999961799
Q ss_pred CCEEEE
Q ss_conf 310120
Q gi|254780904|r 86 FIYATT 91 (268)
Q Consensus 86 ~~~~~~ 91 (268)
.+....
T Consensus 237 vvy~~~ 242 (328)
T 3grf_A 237 VVYTDS 242 (328)
T ss_dssp EEEECC
T ss_pred EEEEEH
T ss_conf 898501
No 54
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=26.28 E-value=27 Score=13.92 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=41.5
Q ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCHHHHHHHH---HC-C-CCCCCHHCCCCHHHHHHCCCC
Q ss_conf 896899942888547999999-99971998049808888999999999853---10-1-344420013778998412553
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSA---NA-D-CVIDSVRVFSNLKEAIADLHF 86 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaR-a~~~fG~~~L~lv~P~~~~~~~~a~~~a~---~a-~-~~~~~~~~~~~~~~a~~~~~~ 86 (268)
+..-|.+++ .||||+.+= ++..-++.+|+|++... +.+...++ ++ . .............+++++++.
T Consensus 4 ~~~KI~IiG---aG~VG~~~a~~l~~~~l~el~L~D~~~----~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~dadi 76 (321)
T 3p7m_A 4 ARKKITLVG---AGNIGGTLAHLALIKQLGDVVLFDIAQ----GMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDV 76 (321)
T ss_dssp CCCEEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCCCEEEEEECCC----CCCHHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCCE
T ss_conf 888799999---898999999999828998799992899----8004085776674765789847935886788278989
Q ss_pred CEEEECCCC
Q ss_conf 101201122
Q gi|254780904|r 87 IYATTARNR 95 (268)
Q Consensus 87 ~~~~~~~~~ 95 (268)
++.+.+..+
T Consensus 77 vvitag~~~ 85 (321)
T 3p7m_A 77 VIVTAGVPR 85 (321)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
T ss_conf 998067689
No 55
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=25.87 E-value=28 Score=13.88 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 7999999999719980498088889999999
Q gi|254780904|r 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 (268)
Q Consensus 27 NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a 57 (268)
..+|+.+++..+|+.++-++.|...+.+++.
T Consensus 104 ~~~A~~~Al~~lg~krIav~tPY~~~~~~~~ 134 (240)
T 3ixl_A 104 MSTAVLNGLRALGVRRVALATAYIDDVNERL 134 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEECCCCHHHHHHHH
T ss_conf 7999999999809986454367648999999
No 56
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=24.72 E-value=29 Score=13.74 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 854799-999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 24 LGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 24 ~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
.-|+|| .+++.+++||++ ++.++|.... .......++++.+..++.+.....
T Consensus 131 G~G~IG~~va~~l~~fg~~-V~~~d~~~~~----------------~~~~~~~~l~~ll~~sDvv~~~~P 183 (303)
T 1qp8_A 131 GLGEIGTRVGKILAALGAQ-VRGFSRTPKE----------------GPWRFTNSLEEALREARAAVCALP 183 (303)
T ss_dssp SCSTHHHHHHHHHHHTTCE-EEEECSSCCC----------------SSSCCBSCSHHHHTTCSEEEECCC
T ss_pred EECHHHHHHHHHHHHCCCE-EEEECCCCCC----------------CCCCCCCCHHHHHHCCCEEEECCC
T ss_conf 0389999999988735977-9974488422----------------333233879999725799986167
No 57
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=24.45 E-value=30 Score=13.71 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf 899942888547999-999999719980498088889999999998531013444200137789984125531012011
Q gi|254780904|r 16 VIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268)
Q Consensus 16 ~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268)
.|-++. -|+||. +|+-+.+||.. ++.++|.... ..... .. ....+.++++.++.++.+......
T Consensus 166 ~vgIiG---~G~IG~~va~~l~~fgm~-V~~~d~~~~~--~~~~~-~~-------~~~~~~~l~ell~~sDvI~l~~Pl 230 (351)
T 3jtm_A 166 TIGTVG---AGRIGKLLLQRLKPFGCN-LLYHDRLQMA--PELEK-ET-------GAKFVEDLNEMLPKCDVIVINMPL 230 (351)
T ss_dssp EEEEEC---CSHHHHHHHHHHGGGCCE-EEEECSSCCC--HHHHH-HH-------CCEECSCHHHHGGGCSEEEECSCC
T ss_pred EEEEEC---CCCHHHHHHHHHHHCCCE-EEEECCCCCC--HHHHH-HC-------CCCCCCCHHHHHHHCCEEEEECCC
T ss_conf 666777---465299999999863886-7844587776--66677-51-------960047899998549999993678
No 58
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=24.08 E-value=30 Score=13.66 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=41.4
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC----CCCCCCH-HCCCCHHHHHHCCCCCEE
Q ss_conf 8999428885479999-999997199804980888899999999985310----1344420-013778998412553101
Q gi|254780904|r 16 VIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSV-RVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 16 ~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a----~~~~~~~-~~~~~~~~a~~~~~~~~~ 89 (268)
-|.+++ .|+||+. +=++..-++.+|.|++... +.+...++.- ....... .......+++++++.++.
T Consensus 6 KV~IiG---aG~VG~~~a~~l~~~~~~el~L~D~~~----~~a~G~a~DL~h~~~~~~~~~~~~~~~~~~~~~~adivvi 78 (322)
T 1t2d_A 6 KIVLVG---SGMIGGVMATLIVQKNLGDVVLFDIVK----NMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIV 78 (322)
T ss_dssp EEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSS----SHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEE
T ss_pred EEEEEC---CCHHHHHHHHHHHCCCCCEEEEECCCC----CCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCEEEEE
T ss_conf 799989---798999999999718998799986899----8116698887530534688868953889789658628996
Q ss_pred EECCCC
Q ss_conf 201122
Q gi|254780904|r 90 TTARNR 95 (268)
Q Consensus 90 ~~~~~~ 95 (268)
+.+..+
T Consensus 79 tag~~r 84 (322)
T 1t2d_A 79 TAGFTK 84 (322)
T ss_dssp CCSCSS
T ss_pred CCCCCC
T ss_conf 243233
No 59
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=23.95 E-value=30 Score=13.65 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9987289987543899999999986316999899999999999
Q gi|254780904|r 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 (268)
Q Consensus 202 ~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l~~~E~~~L~Gil~ 244 (268)
-+-+..|+.+-.+...+...++++|+|+.-++.|+.-..-++.
T Consensus 74 e~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a 116 (147)
T 3osj_A 74 PLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVS 116 (147)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9999987015660499999999971899999899999999999
No 60
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=22.28 E-value=33 Score=13.44 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=34.5
Q ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 13489689994288854799-99999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
..++.+.|| .-|.|| +++|+.+..|++ ++.++. +++....|..-... .......+++++..+++.++
T Consensus 6 ~~~r~V~II-----GlGlIG~Sla~aL~~~g~~-V~g~D~-----~~~~~~~A~~~g~~-~~~~~~~~l~~a~~~~DLII 73 (341)
T 3ktd_A 6 DISRPVCIL-----GLGLIGGSLLRDLHAANHS-VFGYNR-----SRSGAKSAVDEGFD-VSADLEATLQRAAAEDALIV 73 (341)
T ss_dssp CCSSCEEEE-----CCSHHHHHHHHHHHHTTCC-EEEECS-----CHHHHHHHHHTTCC-EESCHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEE-----EECHHHHHHHHHHHHCCCE-EEEEEC-----CHHHHHHHHHCCCC-CCCCCCCCHHHHCCCCCEEE
T ss_conf 899818999-----7498999999999878798-999989-----99999999985998-54510056877404686899
No 61
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=21.83 E-value=33 Score=13.39 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHH-------HHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999621366544433333468-888-------999999999-9998728998754389999999998631
Q gi|254780904|r 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPAT-KGE-------LLSFLDYLE-ISLEERGYFRPVEKKKKMLDDLYSIFIR 228 (268)
Q Consensus 158 S~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~-~~~-------l~~~~~~l~-~~l~~~~f~~~~~~~~~~~~~lrrl~~R 228 (268)
..+...+....+||.......+........+ ..+ +..|...+. .-+-+..|+.+-.+...+...++++|+|
T Consensus 13 ~~~l~~vI~AaYRQVf~~~~~~~~~~~rl~~lESqLrng~ItVreFVr~LakSe~yr~~f~~~~~~~R~iEl~~khlLGR 92 (149)
T 2ky4_A 13 KAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGR 92 (149)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCHHHHHHHSHHHHHHHHHTSSCHHHHHHHHHHCHHHHHHHTSSSCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999866865034421102569999876998499999999756999998702676069999999998289
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 6999899999999999
Q gi|254780904|r 229 PELMREEVFLLRGIVS 244 (268)
Q Consensus 229 ~~l~~~E~~~L~Gil~ 244 (268)
+.-++.|+....-++.
T Consensus 93 ~p~~~~Ei~~~~~i~a 108 (149)
T 2ky4_A 93 APIDQAEIRKYNQILA 108 (149)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9999999999999999
No 62
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=20.87 E-value=35 Score=13.26 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=7.3
Q ss_pred EEEEECCCCCCH
Q ss_conf 899942888547
Q gi|254780904|r 16 VIILVDPQLGEN 27 (268)
Q Consensus 16 ~vVLv~p~~p~N 27 (268)
.-|+++|...|=
T Consensus 28 l~~i~G~NGsGK 39 (430)
T 1w1w_A 28 FTSIIGPNGSGK 39 (430)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
T ss_conf 899999999988
No 63
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=20.11 E-value=36 Score=13.16 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCC
Q ss_conf 1348968999428885479-99999999719980498088889999999998531-013444200137789984125531
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFI 87 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~ 87 (268)
..-++..|..++. ..|+ -+.++++.-+|+ ++.++.|....|.+.....+.. +.........+.+..+++.+.+.+
T Consensus 151 g~l~gl~i~~vGD--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~~d~v 227 (321)
T 1oth_A 151 SSLKGLTLSWIGD--GNNILHSIMMSAAKFGM-HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVL 227 (321)
T ss_dssp SCCTTCEEEEESC--SSHHHHHHHTTTGGGTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEE
T ss_pred CCCCCCEEEEECC--CCCHHHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEE
T ss_conf 8877877999768--76635699999875088-47998457768758999999999996499899973889985068879
Q ss_pred EE
Q ss_conf 01
Q gi|254780904|r 88 YA 89 (268)
Q Consensus 88 ~~ 89 (268)
+.
T Consensus 228 ~~ 229 (321)
T 1oth_A 228 IT 229 (321)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
Done!