HHSEARCH alignment of GI: 254780904 and SCOP domain: d1gz0a1

Alignment
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=3.4e-35  Score=238.40  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=123.2

Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             21348968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r    9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus         9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
                      ....+..+|||+++++|+|+|+|+|+|++||++.++++.++++++++++.+.|+|+.+.+... .+.++.++++.+....
T Consensus        13 ~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~-~~~~~~~~l~~~~~~~   91 (166)
T d1gz0a1          13 ASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI-RVTNLARTMRMLQEEN   91 (166)
T ss_dssp             HTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEE-EESCHHHHHHHHHHTT
T ss_pred             HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEECCCCCEEECEE-ECCCHHHHHHHHCCCC
T ss_conf             466898799995788865599999999852886465402543110012312313750376506-6399999998701243


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r   89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC  168 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl  168 (268)
                      ..         .... ..............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+
T Consensus        92 ~~---------~~~~-~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~  161 (166)
T d1gz0a1          92 IW---------IVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEA  161 (166)
T ss_dssp             CE---------EEEE-CTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHH
T ss_pred             CC---------CCCC-CCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHH
T ss_conf             21---------1123-4544454788514687389966676787799998689899970968997546999999999999


Q ss_pred             HHHH
Q ss_conf             9962
Q gi|254780904|r  169 MENS  172 (268)
Q Consensus       169 ~r~~  172 (268)
                      +||.
T Consensus       162 ~rqr  165 (166)
T d1gz0a1         162 VRQR  165 (166)
T ss_dssp             HHHT
T ss_pred             HHCC
T ss_conf             9755


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]