HHSEARCH alignment of GI: 254780904 and SCOP domain: d1ipaa1

Alignment
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=2.8e-34  Score=232.59  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC
Q ss_conf             55321348968999428885479999999997199804980888899999999985310134442001377899841255
Q gi|254780904|r    6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH   85 (268)
Q Consensus         6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~   85 (268)
                      ++......+.+|||+++++|+|+|||+|+|++||++.++++++ +++.++++.+.++|+.+......  ....+++..+.
T Consensus         3 e~~~~~~~~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~~~-~~~~~~~~~r~s~g~~~~~~~~~--~~~~~~~~~~~   79 (158)
T d1ipaa1           3 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA--ASESEVLDWIK   79 (158)
T ss_dssp             CCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE--ECHHHHHHHHH
T ss_pred             HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCC-CCCCCHHHHEECCCCEEEECCCC--CCHHHHHHHHH
T ss_conf             4407799988999968978753899999998602401222056-44333346201124022311001--13699999998


Q ss_pred             CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             31012011223430341242035666553115881699994588842431000123222047678734101688999999
Q gi|254780904|r   86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV  165 (268)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvl  165 (268)
                              .... ....... ............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|
T Consensus        80 --------~~~~-~i~~~~~-~~~~~~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~l  149 (158)
T d1ipaa1          80 --------QHNL-PLVATTP-HAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLL  149 (158)
T ss_dssp             --------HTTC-CEEEECT-TCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHH
T ss_pred             --------HHCC-CCCCCCC-CCCCCCHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHH
T ss_conf             --------6213-4322222-22221000024766289974555666799998488799976899997376999999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999621
Q gi|254780904|r  166 WECMENSI  173 (268)
Q Consensus       166 YEl~r~~~  173 (268)
                      ||++||+.
T Consensus       150 yE~~RQr~  157 (158)
T d1ipaa1         150 YEALRQRL  157 (158)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
T ss_conf             99997533


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RrmA (RrmH), C-terminal domain
species: Thermus thermophilus [TaxId: 274]