BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (268 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/268 (100%), Positives = 268/268 (100%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS Sbjct: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN Sbjct: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 GIVSTLDKFSRQSSRRNNVLLQKTEKSE Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 >gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 303 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/268 (75%), Positives = 235/268 (87%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + +LQNS K P+I+LVDPQLGENIGMVARAM NFN+TQLRLVNPRDGWP++KARSS Sbjct: 35 MAVHMQKLQNSTKSPIIVLVDPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSS 94 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SANAD VIDSVRVFS+LKEAI+DL+F+YATTAR+R+NFKSV APKEAA+VLNERI SGQN Sbjct: 95 SANADHVIDSVRVFSSLKEAISDLNFVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQN 154 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 VG+IFG ER GLTNEEIALSNAIISFPVNP F SLNI+QAVL+M WE MENS+V +KNV Sbjct: 155 VGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWMENSVVVPKKNV 214 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 KE + PAT+GELLSFLDY E SL ERGYFRP E+KKKMLDDL S+FIR ELMR+E+FLLR Sbjct: 215 KESDIPATRGELLSFLDYTENSLAERGYFRPEERKKKMLDDLRSVFIRLELMRQEIFLLR 274 Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 G++STLD+FSR+S R + V+ QK + + Sbjct: 275 GVISTLDRFSRESPRGSLVVPQKKQNNH 302 >gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] Length = 286 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/253 (52%), Positives = 187/253 (73%), Gaps = 2/253 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQLGENIGMVARAM NF L +LRLVNPRDGWPSEKARS+++ AD VID Sbjct: 12 AEGPAIILVEPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ L+EA+ADL+F+YATTAR R+NFK V +P AA L R +G+ GI+FGRE+ G Sbjct: 72 KLYDTLEEALADLNFVYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 L NE++AL++ I++FPVNP F SLNI+QAVLLM +E M++++ V+ PA+K Sbjct: 132 LKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSTMEDVTQTPFQGVDQLPASK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E++ +++E +L+ RGYFRP+ KK +M+D+L ++ R E+ ++RG+VS+LD+F Sbjct: 192 EEVIGLFEHMEDALDARGYFRPIHKKARMIDNLRAVLTRRGFTSPEINVMRGVVSSLDRF 251 Query: 250 SRQSSRRNNVLLQ 262 SR++ R L+ Sbjct: 252 SRRNPRGAGAPLE 264 >gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 277 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 133/254 (52%), Positives = 185/254 (72%), Gaps = 2/254 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L+ A+GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD Sbjct: 7 ELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASKADH 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 VID RVF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ GI+FG Sbjct: 67 VIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEKTGILFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184 RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + + + Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETLFQPIEQ 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + RG++ Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246 Query: 245 TLDKFSRQSSRRNN 258 +LD+F RQ ++ Sbjct: 247 SLDRFPRQWPKKTG 260 >gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 276 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 183/246 (74%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI++ Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + TP+TK Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F Sbjct: 192 DQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251 Query: 250 SRQSSR 255 SR+S R Sbjct: 252 SRKSPR 257 >gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 276 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/250 (53%), Positives = 184/250 (73%), Gaps = 4/250 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI+ Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIEGT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++AIADL+F+YATTAR+R+N+K V +P AA L R +G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEATGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E EQ P+T Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLEAVPFQALEQR-PST 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K +L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+ Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250 Query: 249 FSRQSSRRNN 258 FSR S R+ Sbjct: 251 FSRNSPRKGG 260 >gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1] gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp. BNC1] Length = 262 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/244 (54%), Positives = 180/244 (73%), Gaps = 1/244 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD VID+ Sbjct: 12 AEGPAIVLVEPQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRADHVIDAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF +L A+ADL+F+YATTAR R+NFK V P EA + L R +GQ GI+FGRERWG Sbjct: 72 KVFDDLAGAVADLNFLYATTARPRDNFKPVRGPVEATLQLRARHAAGQRTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+A+++ I++FPVNP F SLN++QAVLLM +E ++ V ++ PA + Sbjct: 132 LTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLKAG-GEGVAPVSPEHVPAPREH 190 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L S +DYL+ L ERGYFR +KK KM D+L ++F RP EE+ +LRG++ +L+KFS Sbjct: 191 LNSLMDYLDRVLSERGYFRNEDKKPKMFDNLRALFTRPGFTVEELAVLRGVLVSLEKFSP 250 Query: 252 QSSR 255 + R Sbjct: 251 KKPR 254 >gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 276 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 182/246 (73%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI+ Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEET 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + TP+TK Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251 Query: 250 SRQSSR 255 SR+S R Sbjct: 252 SRKSPR 257 >gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652] gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT 652] Length = 276 Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 134/250 (53%), Positives = 185/250 (74%), Gaps = 4/250 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ GI+FGRERWG Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++S+ E EQ P+T Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSSMEDLEAVPFQALEQR-PST 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K +L + LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+ Sbjct: 191 KEQLFGLFEQLEKALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250 Query: 249 FSRQSSRRNN 258 F+R S+R+ Sbjct: 251 FTRNSTRKGG 260 >gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 303 Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 135/254 (53%), Positives = 178/254 (70%), Gaps = 2/254 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD Sbjct: 5 DFQRGPGGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADH 64 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 VID+V+VF +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FG Sbjct: 65 VIDAVKVFDDLASALADLNFVFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFG 124 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQN 184 RER+GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K + Sbjct: 125 RERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPEM 184 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+K EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S Sbjct: 185 KPASKEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIIS 244 Query: 245 TLDKFSRQSSRRNN 258 +LD+FS R + Sbjct: 245 SLDRFSPAMPRGDG 258 >gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli CNPAF512] Length = 276 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 134/250 (53%), Positives = 183/250 (73%), Gaps = 4/250 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ GI+FGRERWG Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E EQ P+T Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQR-PST 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K +L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+ Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250 Query: 249 FSRQSSRRNN 258 F+R S R+ Sbjct: 251 FTRNSPRKGG 260 >gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 280 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 183/246 (74%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP +ILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++ Sbjct: 12 AEGPAVILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++A+ADL+F+YATTAR R+ FK V +P AA L R +G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGFKPVRSPVVAAETLRARFKAGEGTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M+ + V++ + P+TK Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKTGMEDVAAVPFQATEQRPSTK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMIDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251 Query: 250 SRQSSR 255 +R+S R Sbjct: 252 TRKSPR 257 >gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] Length = 306 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 178/250 (71%), Gaps = 2/250 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 SA GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+ Sbjct: 11 SAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDA 70 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FGRER+ Sbjct: 71 VKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTGILFGRERF 130 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPAT 188 GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + + PA+ Sbjct: 131 GLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETRTNFSGPDMKPAS 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+ Sbjct: 191 KEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSLDR 250 Query: 249 FSRQSSRRNN 258 FS R + Sbjct: 251 FSPAMPRGDG 260 >gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 181/246 (73%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI + Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIAAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L + G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRAKFRVGEGTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + V + TP+TK Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDVGAVPFQAMGQTPSTK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ +LRG++S+LD+F Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251 Query: 250 SRQSSR 255 SR+S R Sbjct: 252 SRKSPR 257 >gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] Length = 275 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 185/245 (75%), Gaps = 2/245 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLVNPRDGWP+EKARS+++ AD VID + Sbjct: 13 EGPAIILAYPQLGENIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++++L+EAIADL+F+YATTAR+R+ +K V +P AA L +R G+ +GIIFGRER GL Sbjct: 73 LYNSLEEAIADLNFVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKG 190 TNEE+AL++ I++FPVNP F SLN++QAVLLM +E M+ + S ++ + + PATK Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMKTGMESEDQTSFQAIEQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L D+LE +L+ R YFR +K+ K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 HLQGLFDHLEDALDARNYFRSADKRPKLVENLRAVLTRPSFSESEIQVLRGVISSLDRFT 252 Query: 251 RQSSR 255 R++ R Sbjct: 253 RENPR 257 >gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] Length = 280 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/248 (52%), Positives = 181/248 (72%), Gaps = 2/248 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L+ A+GP IILV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD Sbjct: 7 ELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAAASKADH 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 VID +VF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ GI+FG Sbjct: 67 VIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGERTGILFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184 RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + ++ + + Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLDETLFHPIEQ 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + RG++ Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPPEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246 Query: 245 TLDKFSRQ 252 +LD+F RQ Sbjct: 247 SLDRFPRQ 254 >gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae WSM419] Length = 276 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/245 (53%), Positives = 182/245 (74%), Gaps = 2/245 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID + Sbjct: 13 EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L +R GQ VGIIFGRER GL Sbjct: 73 LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190 TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ + PATK Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMASEDETFFQPSEQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252 Query: 251 RQSSR 255 R+S R Sbjct: 253 RESPR 257 >gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021] gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] Length = 276 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 181/245 (73%), Gaps = 2/245 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID + Sbjct: 13 EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L R G+ VGIIFGRER GL Sbjct: 73 LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190 TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ Q PATK Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMTSEDETSFQASQQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252 Query: 251 RQSSR 255 R++ R Sbjct: 253 RENPR 257 >gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 304 Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 134/247 (54%), Positives = 175/247 (70%), Gaps = 2/247 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V V Sbjct: 14 GPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVTV 73 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L A+ADL+F++ATTAR R+ FKSV P EA +L R GQ GI+FGRER+GL Sbjct: 74 FDDLASALADLNFVFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFGLY 133 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191 N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K PA+K E Sbjct: 134 NDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPDMKPASKEE 193 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+FS Sbjct: 194 LHGLFAYLEGALEARGYFRPAPKKPKMIDNLRAVLTRAGFAEPELKVLRGIISSLDRFSP 253 Query: 252 QSSRRNN 258 R + Sbjct: 254 AMPRGDG 260 >gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis] gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis] Length = 259 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 181/246 (73%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++ Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V+ L++AIADL+F+YATTAR R +K V +P AA L + +G+ GI+FGRERWG Sbjct: 72 KVYDTLEQAIADLNFVYATTARERYGYKPVRSPVAAAETLRAKFKAGEGTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + P+TK Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAVGQRPSTK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D LE +L+ R YF P KK KM+D+L ++ R +E+ +LRG++S+LD+F Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251 Query: 250 SRQSSR 255 SR+S R Sbjct: 252 SRKSPR 257 >gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 278 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 130/244 (53%), Positives = 172/244 (70%), Gaps = 2/244 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI Sbjct: 9 KNLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L++AIADLH+++ATTAR R FK+V + EAAI+L +R Q GI+FGRE Sbjct: 69 NDAVIFDTLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + + Q P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLEDANDTAFRAVQMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LRGI+S+L Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRFLRGIISSL 248 Query: 247 DKFS 250 D FS Sbjct: 249 DHFS 252 >gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 133/249 (53%), Positives = 175/249 (70%), Gaps = 2/249 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI Sbjct: 9 ENLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ +F L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE Sbjct: 69 NNAVIFDTLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ + VS + P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLENVSDTAFRAPEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKTMFHGFLSQLEEALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248 Query: 247 DKFSRQSSR 255 D FS Q R Sbjct: 249 DHFSPQYPR 257 >gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] Length = 276 Score = 255 bits (651), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 133/249 (53%), Positives = 174/249 (69%), Gaps = 2/249 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GPVIILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKA ++++ AD VI Sbjct: 9 ENLTNGPVIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F+ L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE Sbjct: 69 NDTVIFNTLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ + VS + P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLEDVSDTAFRAAEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L RGYFRP+E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKTIFHGFLSQLEEALNIRGYFRPLERKEVMLANLRSVFTRANFSEPEVRLLRGIISSL 248 Query: 247 DKFSRQSSR 255 D FS Q R Sbjct: 249 DHFSPQYPR 257 >gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 129/260 (49%), Positives = 177/260 (68%), Gaps = 2/260 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL +NIGMVARAM NF L++LRLV PR+ +P++KAR++++ AD VI Sbjct: 9 KNLTNGPIIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L +AIADLH+++ATTAR R FK+V + EAA +L +R G GI+FGRE Sbjct: 69 NDAVIFDTLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186 RWGL N EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + ++ + P Sbjct: 129 RWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLENLNDTAFRAAEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEK 266 D FS + R + + + K Sbjct: 249 DHFSPKFPRGSGAPVDRDRK 268 >gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil 5] Length = 227 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 161/217 (74%), Gaps = 4/217 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++++ AD VI Sbjct: 12 AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + G+ GI+FGRERWG Sbjct: 72 RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEATGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E EQ P+T Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQR-PST 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 K +L D LE +L+ R YF P KK KM+D+L ++ Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 227 >gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] Length = 276 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYGDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + P A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSR 255 + + R Sbjct: 252 TPKKPR 257 >gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13] gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13] gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13] gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] Length = 276 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + P A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSR 255 + + R Sbjct: 252 TPKKPR 257 >gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC 25840] gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 291 Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 27 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 86 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 87 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 146 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + P A K Sbjct: 147 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 206 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 207 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 266 Query: 250 SRQSSR 255 + + R Sbjct: 267 TPKKPR 272 >gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M] gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330] gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94] gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99] gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M] gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330] gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1 str. 9-941] gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH family, group 1 [Brucella melitensis biovar Abortus 2308] gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC 23365] gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC 23445] gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis ATCC 23457] gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28] gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis M5-90] Length = 276 Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + P A K Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSR 255 + + R Sbjct: 252 TPKKPR 257 >gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73] gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73] Length = 277 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 126/258 (48%), Positives = 177/258 (68%), Gaps = 2/258 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + QN GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD Sbjct: 7 KCQNVTNGPIIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKATASKADH 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +I+ +F L++AIADL+++YATTAR R FK+V + EAA +L G GI+FG Sbjct: 67 IINDTLIFDTLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQN 184 RERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + ++ + Sbjct: 127 RERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLNDTAFRAVEL 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA K L FL LE +L+ RGYFRP E+KK M+ ++ S+F R E+ LLRGI+S Sbjct: 187 KPANKATLHGFLSQLEDALDVRGYFRPQERKKVMVTNIRSVFTRANFSESEIQLLRGIIS 246 Query: 245 TLDKFSRQSSRRNNVLLQ 262 +LD FS + R + L+ Sbjct: 247 SLDHFSPKFPRGSGAPLE 264 >gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 273 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/244 (50%), Positives = 170/244 (69%), Gaps = 2/244 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I Sbjct: 9 QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE Sbjct: 69 NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S + P Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S+L Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248 Query: 247 DKFS 250 D FS Sbjct: 249 DHFS 252 >gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] Length = 276 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/245 (48%), Positives = 168/245 (68%), Gaps = 2/245 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP IIL++PQLGENIGMVARAM NF L+ LR+VNPRDGWP+EKA S+++ AD VI+S +V Sbjct: 14 GPAIILMEPQLGENIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKV 73 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L+ A ADL+F++ATTAR R+ K V P EA VL R +G+ GI+FGRER GL Sbjct: 74 FETLEAATADLNFVFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLR 133 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191 N E+ L++ I++FPVNP + SLNI+QAVLL+ +E +++ + + + PA K + Sbjct: 134 NWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLKSGLADPHETAFSAPEVEPAPKTD 193 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +E L+ RGYFR +K+ K +D+L ++ RP +E+ +LRG+ ++ D+F R Sbjct: 194 LHGLFGQIEEGLDARGYFRSDDKRMKAIDNLRAVLTRPGFSTDEINVLRGVFASFDRFDR 253 Query: 252 QSSRR 256 +RR Sbjct: 254 SGNRR 258 >gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C] Length = 273 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/244 (50%), Positives = 170/244 (69%), Gaps = 2/244 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I Sbjct: 9 QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FGRE Sbjct: 69 NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHKTGILFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S + P Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S+L Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248 Query: 247 DKFS 250 D FS Sbjct: 249 DHFS 252 >gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi ATCC 49188] Length = 281 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 175/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V + A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLETETETVFRGPELELAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F Sbjct: 192 NELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 251 Query: 250 SRQSSR 255 + + R Sbjct: 252 TPKKPR 257 >gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] Length = 302 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 122/246 (49%), Positives = 175/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 33 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 92 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 93 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 152 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V + A K Sbjct: 153 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENETETVFRGPELELAPK 212 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F Sbjct: 213 QELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 272 Query: 250 SRQSSR 255 S + R Sbjct: 273 SPKKPR 278 >gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1] Length = 279 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 126/263 (47%), Positives = 180/263 (68%), Gaps = 4/263 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QN GP+I+LV+PQL ENIGMVARAM NF L+ LRLV PR+ +P+EKAR++++ AD +I Sbjct: 9 QNIMNGPIIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAAASKADHII 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D+ VF+ L +AIADL+++ TTAR R FK+V + EAA +L G +GI+FGRE Sbjct: 69 DNALVFNTLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHKIGILFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNT 185 RWGL N+EI+ ++ I++FPVNP F SLNI+QAVLLM +E M+ + + + V E + Sbjct: 129 RWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLDDLNDTAFRVAEMKS 188 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R +L E+ LLRG++S+ Sbjct: 189 -ADKATLHGFLSQLENALDSRGYFRPQERKEVMVLNIRSVFTRAKLSESEIRLLRGVISS 247 Query: 246 LDKFSRQSSRRNNVLLQKTEKSE 268 LD FS + R + + + K + Sbjct: 248 LDHFSPEFPRGSGAPVGRNRKKK 270 >gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] Length = 261 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 172/247 (69%), Gaps = 1/247 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GPV+ILV+PQ+GENIG ARAM NF L +LRLV+PRDGWP+ A++++A AD +ID+V Sbjct: 12 AEGPVVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNV 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF L++A+ADL F+YATTAR R K V P EAA L R +G+ GI+FGRER G Sbjct: 72 QVFDLLEDALADLQFVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L + E+AL++ I++FPVNP F SLNI+QAVLLM +E M + + + + + PA K + Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMASGEIELPIH-QPPSEPAEKDD 190 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +LE +LE+ YFRP KK M+++L +IF + L ++E+ LRG+V+TL+ Sbjct: 191 LFGLFGHLEGALEDMHYFRPSHKKATMVENLRNIFQKAGLSKQEIHALRGVVATLEGRKT 250 Query: 252 QSSRRNN 258 + R++ Sbjct: 251 RPRRQHG 257 >gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33] Length = 276 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 175/246 (71%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ + SEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + P A K Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSR 255 + + R Sbjct: 252 TPKKPR 257 >gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/246 (49%), Positives = 171/246 (69%), Gaps = 2/246 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD Sbjct: 7 KCQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQATASKADH 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +I+ +F L +AIADL+++YATTAR R FK+V + EAA +L G GI+FG Sbjct: 67 IINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQN 184 RERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + +S + Sbjct: 127 RERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLSDTAFRAIKL 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ LLRG++S Sbjct: 187 KPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVIS 246 Query: 245 TLDKFS 250 +LD FS Sbjct: 247 SLDHFS 252 >gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] Length = 270 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +AK P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR+S++ AD VID Sbjct: 15 TAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVIDK 74 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF +++ AIADL F++ATTAR+R K V P EAA E G G +FGRERW Sbjct: 75 VQVFDSVEAAIADLQFVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYLFGRERW 134 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188 GL NEE+ALS+ I++ PV+P F SLNI+QAVL+ +E + + + + ++ + PA Sbjct: 135 GLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRKIATAGALPFLLSEDVHPPAK 194 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K ELL F ++LE +L++ +FRP E++ M+ L +IF + EL +EV LRG+V++L+K Sbjct: 195 KDELLRFFEHLEGALDKATFFRPPERRPHMVRTLRNIFQKAELTDQEVRALRGVVASLEK 254 >gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] Length = 270 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/257 (46%), Positives = 176/257 (68%), Gaps = 4/257 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR++++ AD VID Sbjct: 15 TARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVIDK 74 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF + AIADL+F+YATTAR+R K V P EAA+ + VG +FGRERW Sbjct: 75 VQVFETTEAAIADLNFVYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLFGRERW 134 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188 GL NEE+AL++ I++ PV+P F SLNI+QAVL+ +E + + + +E++ PA+ Sbjct: 135 GLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASKGELPFLLSEEEHPPAS 194 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K ++L ++LE SL+E +FRP E++ M+ +L +IF + EL ++EV LRG+++ L++ Sbjct: 195 KDDILRMFEHLESSLDEVSFFRPPERRPHMVRNLRNIFQKAELSQQEVRTLRGVIAALER 254 Query: 249 FSRQSSRRNNVLLQKTE 265 R++ R + +TE Sbjct: 255 --RETRPRKTGDVDETE 269 >gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 311 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 166/236 (70%), Gaps = 2/236 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP I+LV+PQLGENIGMVARAM NF L+ LRLV+PRDGWP+E+A ++++ AD VI++ R+ Sbjct: 38 GPAIVLVEPQLGENIGMVARAMANFGLSDLRLVSPRDGWPNERAVAAASRADHVIEAARL 97 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +++ A+ADL F+YATTAR R++FK V P+ AA L RI +GQ+ GI+FGRER+GL+ Sbjct: 98 YDSVEAAVADLTFVYATTARARDSFKPVREPETAAANLRARIGAGQSAGILFGRERFGLS 157 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLM--VWECMENSIVSSEKNVKEQNTPATKGE 191 NEE+ L++ I++FPV+P F SLNI+QAVLL+ W ++ V+ + + PA K + Sbjct: 158 NEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWRMAGSADVTKPRFSAPEVPPARKED 217 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L L++LE SL+ GYF P K++ + L ++ + EV +RG++ + D Sbjct: 218 LHRLLEHLETSLDRNGYFYPEHKREALAQKLRTMLTKAGFSEPEVRTMRGVIRSFD 273 >gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella bacilliformis KC583] Length = 275 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/260 (49%), Positives = 177/260 (68%), Gaps = 2/260 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GPVI+LV+PQL ENIGMVARAM NF L+ LRL+NPR+ +P++KA+++++ AD VI Sbjct: 9 KNVMDGPVIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D+ VF+ L +AIADLH+I+ TTAR R FK + + EAA +L + G GI+FGRE Sbjct: 69 DNALVFNTLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHKTGILFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186 RWGL N+EI+L N I++FPVNP F SLNI+QAVLLM +E M++ + VS E+ Sbjct: 129 RWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENVSDTAFRAEEMKL 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + L L LE +L+ RGYFRP E+K+ M+ ++ S+F R EV LLRGIVS+L Sbjct: 189 ADRETLHGLLFQLEDALDVRGYFRPQERKEIMVSNMRSVFTRANFSESEVRLLRGIVSSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEK 266 + FS + R + ++ K Sbjct: 249 NHFSPKFPRGSGAPAERDRK 268 >gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum SL003B-26A1] gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum SL003B-26A1] Length = 289 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 114/236 (48%), Positives = 164/236 (69%), Gaps = 2/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL +PQLGENIG ARAM NF L LRLVNPRDGWPS+KAR++++ AD VID+V+VF Sbjct: 19 PAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASRADHVIDAVQVF 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+ A+ADL F++ATTAR+R K V P EAA + +G G +FGRERWGL N Sbjct: 79 DSLEAAVADLSFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGYLFGRERWGLNN 138 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192 +E+AL++ I++ PV+P F SLNI+QAVL+ +E + + + ++ N PA K +L Sbjct: 139 DEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRKTATRGALPFALDEDANPPAGKADL 198 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE +L+ G+ RPVE++ M+ ++ +IF + L +EV LRGIV+ L++ Sbjct: 199 LRFFEHLEGALDGAGFLRPVERRPHMVRNIRNIFQKARLTDQEVKTLRGIVAALER 254 >gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] Length = 256 Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 117/243 (48%), Positives = 165/243 (67%), Gaps = 2/243 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N+A PV++L +PQLGENIGMVARAM NF L LRL+NPRDGWPSEKARS+S+ A VID Sbjct: 9 NTAIPPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSASSRAHHVID 68 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + RVF +++EA+ADL ++ATTAR+R+ K V+ P EAA + G G +FGRER Sbjct: 69 AARVFDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIPSGYLFGRER 128 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPA 187 WGL N+E+AL+N I++ PV+P + SLNI+QAVL+ +E + + + + PA Sbjct: 129 WGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRRVATAGALPFSLDDYEGEPA 188 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T+ + D+LE L+ RG+FRPVEKK + L +IF + +L EV ++RG++S + Sbjct: 189 TQESIQRMFDHLESGLDARGFFRPVEKKPVTIRRLRNIFQKADLTDNEVRIMRGVISCFE 248 Query: 248 KFS 250 K+ Sbjct: 249 KYG 251 >gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 256 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 165/240 (68%), Gaps = 4/240 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IILV+PQ+GENIGMVARAM NF L LRLV PRDGWP+EKAR++++ AD V+D+ RVF Sbjct: 13 PAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAARVF 72 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L++A+ADL +YATTAR R+++K V P+EAA L +G+ G+IFGRE++GL N Sbjct: 73 EKLEDALADLSLVYATTARARDSYKPVRGPEEAAERLVAHAPAGK-TGVIFGREKYGLEN 131 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLM--VWECMENSIVSSEKNVKEQNTPATKGEL 192 +E+ L++ I++FPVNP F SLNI+QAVLL+ W N + + N PA K +L Sbjct: 132 DEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRNASNP-SKTPRFSAPPNPPAEKADL 190 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+LE L+ R YF P EK++ ++ +L ++ + + +EV LRG++ +LD+ ++ Sbjct: 191 YRLFDHLEAMLDCRNYFFPPEKREALVQNLRTMLTKAQFSEQEVRSLRGVLKSLDRPAQH 250 >gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] Length = 293 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/249 (46%), Positives = 170/249 (68%), Gaps = 5/249 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL +PQLGENIG ARAM NF LR+VNPRDGWPSEKAR++++ AD VID V+VF Sbjct: 43 PAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRADHVIDKVQVF 102 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+ AIADL F++ATTAR+R K V +P EAA + + SG G IFGRERWGL N Sbjct: 103 DSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYIFGRERWGLNN 162 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGEL 192 EE+AL++ I++ PV+P F SLNI+QAVL+ +E + + + + +E + PA K ++ Sbjct: 163 EEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTATAGALPFRLDEELHPPAVKEDV 222 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-- 250 + ++LE +L+E +FRP E++ M+ L +IF + EL +EV LRG+++ L++ Sbjct: 223 VRLFEHLESALDEVTFFRPPERRPHMVRTLRNIFQKAELTEQEVRALRGVIAALERRETR 282 Query: 251 -RQSSRRNN 258 R+S + +N Sbjct: 283 PRRSDKDDN 291 >gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] Length = 266 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/247 (46%), Positives = 164/247 (66%), Gaps = 1/247 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N+ GPV+ILV+PQ+GENIG ARAM N LT+LRLVNPRDGWP+EKA ++SA A V+D Sbjct: 18 NAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGATEVLD 77 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RVF+ +EAIADLH +YAT AR R+ K ++ P+ AA L+ + +G+ VGI+FG ER Sbjct: 78 RARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAARDLHAHVAAGRRVGILFGPER 137 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPAT 188 GL N++I LS+ +IS P+NP F SLN++QAVLL+ +E ME + Q+ PAT Sbjct: 138 TGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQAEEFYTHTGQSPPAT 197 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K EL + D+LE L++ G++ +KK M+ ++ + R + +EV GI++ L Sbjct: 198 KEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRTFHGIIAALVG 257 Query: 249 FSRQSSR 255 +Q +R Sbjct: 258 RKKQRAR 264 >gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] Length = 253 Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 164/232 (70%), Gaps = 2/232 (0%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ V+ +L AIADL+ Sbjct: 3 ENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIADLN 62 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+GL+NEE+ L++ +++ Sbjct: 63 FVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADELVT 122 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATKGELLSFLDYLEISL 203 FPVNP F SLNI+QAVLLM +E M++ + + V + P A K EL F ++LE +L Sbjct: 123 FPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPKEELHGFFNHLEEAL 182 Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F+ + R Sbjct: 183 DVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVFTPKKPR 234 >gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum lavamentivorans DS-1] Length = 262 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 1/236 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +ILV PQLGENIG ARAM NF LT LRLV PRDGWP+E+AR++++ AD VID R+ Sbjct: 17 GPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ EAIADL ++ ATTAR+R+ K +L P+ AA + +G G++FG ER GL Sbjct: 77 FATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGLLFGPERTGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192 N++I L++A++ PVNP F SLN++Q VLLM +E + + ++ Q PATK EL Sbjct: 137 NDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHKAGDATEAARIEYPQTRPATKEEL 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F +LE L+ G+ +P EK+ M+ +L ++F R L +EV LRG+V+ L + Sbjct: 197 VGFFHHLEGELDRFGFLKPPEKRPSMIRNLRNMFQRAVLTEQEVRTLRGVVAALTR 252 >gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 398 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/248 (44%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ AR S++ AD ++D+V + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILDAVEL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD ++ATTAR + K V P+ AA + G GI+FGRER+GL Sbjct: 77 FETVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRERYGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 N E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ ++ Sbjct: 137 NHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPYAMPERSEPASQHQM 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L+ + RP EK+ ML +L +IF R + R+++ L G V + + R+ Sbjct: 197 TAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMDPTRQDIHTLHGAVMAIAE-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 399 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 120/250 (48%), Positives = 171/250 (68%), Gaps = 6/250 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID VR+ Sbjct: 15 GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L EAIADL ++ATTAR+ + K V+ P+ AA + +I SG GI+FGRER GLT Sbjct: 75 FETLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIASGGRAGILFGRERSGLT 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE+A +N II++PVNP F SLN++QAVLLM +E + +V+S + E++ AT+ Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTSGALPFAMPERSERATQE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QMEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDMHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] Length = 399 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 169/248 (68%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID VR+ Sbjct: 15 GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ L EAIADL ++ATTAR+ + K V+ P+ AA + +I +G GI+FGRER GLT Sbjct: 75 FATLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIAAGGRAGILFGRERSGLT 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192 NEE+A +N II++PVNP F SLN++QAVLLM +E + + + E++ AT+ +L Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTFGALPFTMPERSERATQEQL 194 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + R+ Sbjct: 195 EAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDIHTLHGVVMAIAE-GRK 253 Query: 253 SSRRNNVL 260 + VL Sbjct: 254 GPAKGGVL 261 >gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] Length = 410 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 109/248 (43%), Positives = 168/248 (67%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LR+V PRDGWP+ AR +++ AD ++D+V + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADYILDAVEL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +++A+A ++ATTAR + K V AP+EAA + + G VGI+FGRER+GL Sbjct: 77 FETVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFGRERYGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192 N+E+AL+N I++FPVNP F SLN++QAVLLM +E + + ++ + E++ A++ ++ Sbjct: 137 NDEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLATANALPFAMPERSERASQHQM 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+ Sbjct: 197 QAFFDNLVGELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110] Length = 398 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 112/252 (44%), Positives = 170/252 (67%), Gaps = 4/252 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S GP++ILV+PQLGENIGM ARAM NF L++LR+VNPRDGWP+ A+ ++A AD +++ Sbjct: 12 SLDGPIVILVEPQLGENIGMAARAMGNFALSRLRIVNPRDGWPNIAAQRAAAGADYILEK 71 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +F + EA+ADL ++ATTAR + K V+ P+ AA ++ + +G GI+FGRERW Sbjct: 72 VELFDTVGEAVADLDLLFATTARPHDQAKPVVGPEAAAAEISGHVATGGKAGILFGRERW 131 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPAT 188 GLTNEE+ L+N II+FPVNP F SLN++QAVLL+ +E + + S E + E++ A+ Sbjct: 132 GLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYEWFKLA-TSGELPHAMPERSERAS 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 191 QHQMQAFFDNLIRELDKVEFLRPAEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAE 250 Query: 249 FSRQSSRRNNVL 260 R+ + VL Sbjct: 251 -GRKGPAKGGVL 261 >gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] Length = 245 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+ Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EAIADLHF+ ATTAR R K V AP++A ERI G+ VG++FGRER GL+N Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193 +E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ +L Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 S LE +L G++ P EK++ + ++ + R + ++V RG + L++ +R++ Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242 >gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] Length = 245 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+ Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193 +E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ +L Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 S LE +L G++ P EK++ + ++ + R + ++V RG + L++ +R++ Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242 >gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] Length = 400 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 107/248 (43%), Positives = 163/248 (65%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A +SA AD ++++V + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNAVEL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++ +A+AD ++ATTAR + K V P+ AA + I +G GI+FGRER GL Sbjct: 77 FDSVADAVADCALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERHGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192 N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ ++ Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPFAMPERSEPASQHQM 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L+ + P EK+ ML +L +IF R + ++++ L G + + + R+ Sbjct: 197 QAFFDNLVAELDRVEFLCPPEKRDTMLVNLRNIFTRMDPTKQDIHTLHGAIMAIAE-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium extorquens PA1] Length = 245 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+ Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N Sbjct: 64 ATLPEAIADLHFLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193 +E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ +L Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 S LE +L G++ P EK++ + ++ + R + ++V RG + L++ +R+ Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARK 241 >gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] Length = 399 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++++V + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADHILNAVEL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FGRER GL Sbjct: 77 FDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFGRERHGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + E++ A++ ++ Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRASQHQI 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V + R+ Sbjct: 197 DAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIAD-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT 894] Length = 225 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 2/206 (0%) Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 WP+EKA ++++ AD VI + +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L Sbjct: 1 WPNEKALATASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETL 60 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ Sbjct: 61 RAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKS 120 Query: 172 SI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 + V + TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R Sbjct: 121 GMEDVGAVPFQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRR 180 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSR 255 +E+ +LRG++S+LD+FSR+S R Sbjct: 181 AFTEQEISVLRGVISSLDRFSRKSPR 206 >gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] Length = 245 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +V+ Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EAIADL F+ ATTAR R K V AP++A ERI G+ +G++FGRER GL+N Sbjct: 64 ATLPEAIADLQFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193 +E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ +L Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 S LE +L G++ P EK++ + ++ + R + ++V RG + L++ +R++ Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242 >gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 404 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++++V + Sbjct: 22 GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADHILNAVEL 81 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FGRER GL Sbjct: 82 FDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFGRERHGLE 141 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + E++ A++ ++ Sbjct: 142 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRASQHQI 201 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V + R+ Sbjct: 202 DAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIAD-GRK 260 Query: 253 SSRRNNVL 260 + VL Sbjct: 261 GPAKGGVL 268 >gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] Length = 279 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 104/233 (44%), Positives = 154/233 (66%), Gaps = 1/233 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+LV PQL ENIGMVARAM N LT LRLV PR+ W +EKA +S++ AD ++ R F Sbjct: 18 PAIVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREARFF 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + AIAD++ +YATTAR R+ K VL P+ AA L ++ +G+ ++FG ER GL+N Sbjct: 78 ETTEAAIADINRVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGLSN 137 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELL 193 +++AL++AI+ P+NP + SLN++QAVLL+ +E + +E+ V PAT+GELL Sbjct: 138 DDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQAGDATPAEQLVTNDTQPATRGELL 197 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 F D+LE L++ G+ R K+ M+ +L ++F R +L +E+ L G+V L Sbjct: 198 GFFDHLERELDDCGFLRNAAKRPGMVRNLRNLFERADLTEQEIRTLHGVVKEL 250 >gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 258 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 1/242 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +ILV PQLGENIG ARAM N LT LRLV PRDGWP+ KA ++++ AD VI++ R+ Sbjct: 15 GPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F EA+ADL ++ATT R R+ + + P+ AA + ER +GQ +G++FG ER GL Sbjct: 75 FETTAEAVADLEAVFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQKLGVMFGPERTGLV 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGEL 192 N+++ L+ +++ P+NP F SLN++QAVLL+ +E + + ++ + Q PAT E Sbjct: 135 NDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQTRPATMAER 194 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 ++F + LE +L+ G+F EK+ M+ L + F R E+ +EV G+V+ L + SR+ Sbjct: 195 VNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALVQGSRR 254 Query: 253 SS 254 Sbjct: 255 KG 256 >gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] Length = 391 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/250 (44%), Positives = 164/250 (65%), Gaps = 6/250 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A ++A AD ++ V V Sbjct: 15 GPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGADHILTQVEV 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++ A+AD ++ATTAR + K V+AP+ AA + + G GI+FGRERWGLT Sbjct: 75 FETVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGILFGRERWGLT 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE++L+ I++FPVNP F SLN++QAVLLM +E + + S + ++ E++ A++ Sbjct: 135 NEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYEWFK--LASGGEIPFSMPERSERASQH 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F L L++ + RP EK+ ML +L +IF R E ++++ L G+V L + Sbjct: 193 QMEAFFTNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPTKQDMHTLHGVVMALAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] Length = 248 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/233 (43%), Positives = 155/233 (66%), Gaps = 2/233 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D + Sbjct: 9 PVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + EAI DLH + ATTAR R K V+ P A + R+ +G+ VGI+FGRER GL+N Sbjct: 69 ATVAEAIGDLHHVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRERVGLSN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193 +E++L++AI++FPV+P PSLN++Q+VLL+ +E + +++ E ++ PA++ LL Sbjct: 129 DEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRRAAGLAALPFDGELRSPPASREALL 188 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + LE +L+ GYF P EK+ M+ +L I R + ++V LRG++ L Sbjct: 189 ALFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDVRSLRGVLRAL 240 >gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] Length = 245 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 155/235 (65%), Gaps = 2/235 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D +VF Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRAKVF 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+ DLH + ATTAR R K V AP+EA +RI G+ VG++FGRER GL+N Sbjct: 64 ATLAEAVGDLHGLLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193 +E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ LL Sbjct: 124 DEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGELLSPPATREALL 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 S LE +L G++ P EK++ + ++ + R + ++V RG + L + Sbjct: 184 SLFASLEETLAGAGFY-PPEKREIIARNMRDMLHRMAMTEQDVRTFRGALRALHR 237 >gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris BisA53] Length = 397 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 110/248 (44%), Positives = 169/248 (68%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++D+ + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILDAAVL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++++A+ D ++A+TAR + K V+AP+ AA + I G NVGI+FGRER+GL Sbjct: 77 FDSVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRERYGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192 N+E+AL+N II+FPVNP F SLN++QAVLL+ +E +++ ++ + E++ A++ ++ Sbjct: 137 NQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKHATQNALPFAMPERSERASQHQM 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L++ + RP EK+ ML +L +IF R E ++++ L G V + + R+ Sbjct: 197 QAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGAVMAIAE-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 430 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 157/244 (64%), Gaps = 12/244 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL++PQL +NIGMVARA NF L LRLVNPRDGWP+EKAR +++ A+ VID R F Sbjct: 172 PSVILMEPQLADNIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASGANYVIDDARPF 231 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+++IADL++I ATTAR R+ K VL P++A RI G+ GI+FGRER GL Sbjct: 232 EKLEDSIADLNWIAATTARQRDMRKPVLTPEQAIAEARARIARGERCGILFGRERNGLET 291 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------IVSSEKNVKE----- 182 E+A ++A+I PVN F SLN++QAVLL+ +E M + + + EK + E Sbjct: 292 GEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMRSDAGRSLGRVTTYEKPLNEGLYMG 351 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ PATK EL+ ++LE LE G+F P +K + +L ++ R +EV LRGI Sbjct: 352 RDRPATKEELIGLFEHLERELEANGFFNPAHRKTVVSQNLRTLLTRMNATEQEVRTLRGI 411 Query: 243 VSTL 246 V+TL Sbjct: 412 VATL 415 >gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] Length = 393 Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 111/250 (44%), Positives = 165/250 (66%), Gaps = 6/250 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ ++A AD +++ V + Sbjct: 15 GPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAQRAAAGADHILERVEL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++ A+AD ++ATTAR + K V+AP AA + E GI+FGRER GLT Sbjct: 75 FETVEAAVADCALLFATTARAHDQAKPVVAPDAAAREIVEGTAQDITAGILFGRERSGLT 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE+AL+N I++FPVNP F SLN++QAVLLM +E + + S ++ E++ PA++ Sbjct: 135 NEEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFK--LASGGMIPFSMPERSEPASQH 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QMQAFFDNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPSKQDMHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter autotrophicus Py2] Length = 298 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 6/262 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A GPV+ILV+PQLG+NIG ARAM NF L++LR+VNPR+GWPSE AR SA AD ++ Sbjct: 14 AGGPVVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEA 73 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L+ A+ +++ +A TAR R K VL A R+ G++V ++FGRER G Sbjct: 74 VLYPDLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190 L EE++L +AI++ PVNP F SLN++ V + +E + + +P A KG Sbjct: 134 LYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYEWFKAETGGALPFAPPDRSPLADKG 193 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--- 247 +LL+F D+LE +LE+ G+FR EK + +L +IF R L R+++ L G V+ L+ Sbjct: 194 DLLAFFDHLEGALEQSGFFRSPEKAPSTIRNLRNIFHRLGLTRQDLATLHGAVTALEEGR 253 Query: 248 --KFSRQSSRRNNVLLQKTEKS 267 + +R++ R + + K+ K+ Sbjct: 254 AGRDARKTIRIADAAIHKSRKA 275 >gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] Length = 282 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 160/256 (62%), Gaps = 1/256 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV++LV+PQLGENIG RAM NF L++LRLVNPR+GWP+ KA + ++ AD ++++ V Sbjct: 16 GPVVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEV 75 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+ A+ADL+F+ A TAR R K+VL A RI G+NVG++FGRER GL Sbjct: 76 FPDLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLY 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGEL 192 EE++L++ I++ PVNP F SLN+ AV ++ +E + + + + P A K +L Sbjct: 136 TEEVSLADVILTLPVNPAFASLNLGMAVAVVAYEWFKLASGGALPFQQPDRYPIADKADL 195 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L+F D++E L+E +FR EKK + ++ +IF R L R+++ L G+V+ L + R Sbjct: 196 LAFFDHVEKELDEALFFRSPEKKPVTIRNIRNIFHRVGLTRQDIATLHGMVAALVEGRRT 255 Query: 253 SSRRNNVLLQKTEKSE 268 R L K + Sbjct: 256 REERTAARLSGKPKEK 271 >gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 147/238 (61%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S PVIIL PQL ENIG VAR M NF L+ LRLVNPRDGWP E+A +S++ AD +++ Sbjct: 5 SYPAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNA 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV+ ++ AIADL IYATTAR R VL P+ AA L+ +GQ VG++FG ER Sbjct: 65 ARVYDSVAAAIADLQLIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGERA 124 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL ++IAL A+++ P++P F SLN++QAV + +E + N +E PAT Sbjct: 125 GLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWRATAADRPPPNFREGPPPATGE 184 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LL F ++LE LE G+F P EK M+ +L S R +EV LRG+V+ L + Sbjct: 185 ALLGFYEHLERELETAGFFHPPEKTPNMIQNLRSALGRARFTDQEVRTLRGVVTALSR 242 >gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] Length = 275 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/255 (45%), Positives = 161/255 (63%), Gaps = 11/255 (4%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV 67 GP I+LV PQL NIGM ARAM NF L+ LRLV PR+GWP+ E + S++A A + Sbjct: 16 GPTIVLVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPTRDPVYREASYSAAAGAAFL 75 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +DS +++ +EAIADL F+YA TAR R K V P A RI +G+ G+IFG Sbjct: 76 LDSAKLYETAREAIADLTFVYAATARERGQMKPVTTPAAALPQTVARIAAGERHGVIFGP 135 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTP 186 ER GL N+E+AL+++I++FPVNP + SLN++QAVLL +E + + + E++ P Sbjct: 136 ERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDAIPFDNSERSPP 195 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT+ LSF D+LE L+ER +FRP KK M +L ++F R L ++V LRG+V L Sbjct: 196 ATREMTLSFFDFLERELDERQFFRPETKKPVMSRNLRNMFHRMGLTEQDVRTLRGMVVRL 255 Query: 247 DKFSR----QSSRRN 257 + R ++SRRN Sbjct: 256 IEGPRREPKKASRRN 270 >gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 289 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/236 (42%), Positives = 155/236 (65%), Gaps = 1/236 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A GPV+ILV+PQLGEN+G ARAM NF L++LR+VNPR+GWP+EKAR A AD ++D Sbjct: 14 AGGPVVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDA 73 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++F +L+ A+AD+ + ATTAR R K V A R+ +G++V ++FGRER G Sbjct: 74 QLFPDLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKG 190 L EE++L ++I++ PVNP F SLN++ AV + +E + + ++ V E++ PA + Sbjct: 134 LYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSKAATGNALPFVMPERSPPADRV 193 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +L +F D+LE LEE +FR EK ++ +IF R EL ++++ L G+++ L Sbjct: 194 DLFAFFDHLERELEEAAFFRSPEKAPSTTRNIRNIFHRCELTKQDLATLHGMITAL 249 >gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] Length = 263 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 109/258 (42%), Positives = 165/258 (63%), Gaps = 13/258 (5%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S P IILV+PQLGENIG ARAM NF L +LRLV PRDGWP+E AR+S+A A ++D Sbjct: 6 SPSAPAIILVEPQLGENIGAAARAMANFGLRELRLVAPRDGWPNEAARASAALAVEIVDG 65 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R++ +L A+ADLH+I ATTAR+R K VLAP A + ER + G++FG+ER Sbjct: 66 ARLYPDLATAVADLHYIVATTARSRFLAKPVLAPDTAVTEIAERQAADLRCGVLFGKERT 125 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------------CMENSIVSSEK 178 GL N ++A+++AI++ PV+P F SLN++Q+VLL +E + ++ + + Sbjct: 126 GLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRKLVNPHSLGRTLPDAPLGAGH 185 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 K + PA +GEL++F ++LE L+ G+ P EK++ M++++ ++F R +EV Sbjct: 186 RFK-ASRPAERGELIAFYEHLEGELDHCGFLFPPEKRETMVNNIRTMFARMAPTEQEVRT 244 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRG+V+ L + Q S + Sbjct: 245 LRGMVAILRRGPWQGSNK 262 >gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] Length = 397 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 161/248 (64%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ A+ ++A AD +++ + Sbjct: 17 GPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNIAAQRAAAGADDILEQAEL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F ++EA+AD ++ATTAR + K V P+ AA + G GI+FGRER+GL Sbjct: 77 FDTVREAVADCTLLFATTARAHDQAKPVRGPEAAAQEIVTATAGGATAGILFGRERYGLQ 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192 NEE+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ ++ Sbjct: 137 NEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQGALPFAMPERSEPASQHQM 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L+ + RP EK+ ML +L +IF R E ++++ L G V + + R+ Sbjct: 197 TAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGAVMAIAE-GRK 255 Query: 253 SSRRNNVL 260 + VL Sbjct: 256 GPAKGGVL 263 >gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46] gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp. 4-46] Length = 250 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 151/235 (64%), Gaps = 2/235 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +ILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D + Sbjct: 8 PAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + EAI DLH + ATTAR R K V+ P EA + R +G+ VGI+FGRER GL+N Sbjct: 68 ATVAEAIGDLHHVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRERVGLSN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193 +E++L++AI++FPV+P SLN++Q+VLL+ +E S +++ E ++ PA + LL Sbjct: 128 DEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRRASGLATLPFDGEMRSPPAPREALL 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 S + LE +L+ GYF P EK+ M+ +L I R + +++ L G + L + Sbjct: 188 SLFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDLRSLHGALRALTR 241 >gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] Length = 250 Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 153/242 (63%), Gaps = 2/242 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A ++D ++ Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLC 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ EA+ D +++ATTAR R K V +P+ A + E+I +G+ V ++FG ER GL N Sbjct: 68 ADVPEALGDCTYVFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGEL 192 E+IA +NAIIS PVNPL+ SLN+ Q VLL +E M S +V ++ + AT E+ Sbjct: 128 EDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQSGDVVHETTDLGRKGDWATGVEV 187 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +++ E L+E G+F P EK + M +L +++ R + R +V +L GI+ + ++ + Sbjct: 188 EKLVEHYEERLDEAGFFYPPEKAEGMKTNLRNLWSRMRMTRSDVQMLHGIMRQMVRWKER 247 Query: 253 SS 254 Sbjct: 248 GG 249 >gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus denitrificans PD1222] Length = 246 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 144/236 (61%), Gaps = 4/236 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73 P IIL+ PQ+GENIG ARAM NF LT +RLV PRDGWP+ +A + +S A V+D RV Sbjct: 7 PAIILMRPQMGENIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARV 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ L EA+AD+ + YATTAR R K VL P A +R+ G V +IFG ER GL Sbjct: 67 FATLAEAMADVDYAYATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLE 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKG 190 NE++A +NAII+ PVNP FPSLN++QAVLL +E ++S+ + + PAT+ Sbjct: 127 NEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQDSLPPQPAPHGRRPDGEAPATRL 186 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ D+ E L E G+F P EK M L +++ R L R + + G++ L Sbjct: 187 EIEKLADHWEERLAEAGFFFPPEKAPAMKLTLRNLWSRLPLTRADTRIFHGMLRQL 242 >gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] Length = 271 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 156/244 (63%), Gaps = 6/244 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSAN 63 +N A GP IILV PQL NIGM ARAM NF L+ LRLV PR+GWP E +A +++A Sbjct: 11 ENVAGGPAIILVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPREGRFKDEAEAAAAG 70 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++ S ++++ L EA+ADL+FI+ATTAR R K V P +A R+ G+ GI Sbjct: 71 AVHLLASAKLYATLPEAVADLNFIWATTARERGQCKRVATPAQAMPENAARLALGERQGI 130 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKE 182 +FG ER GL N++IAL++AI++FPVNP + SLN++QAVLL +E + + + + + Sbjct: 131 LFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYEWFQAAHNAEAPFQLAD 190 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PA + +LSF DYLE L+ G+FRP K M +L +IF R L ++V LRG+ Sbjct: 191 YSPPAPREMILSFFDYLEGELDRSGFFRPAGKAPVMRRNLRNIFHRMHLSEQDVRTLRGM 250 Query: 243 VSTL 246 V L Sbjct: 251 VVRL 254 >gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] Length = 289 Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 105/251 (41%), Positives = 161/251 (64%), Gaps = 10/251 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68 GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++ Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGAYRKGAYAAAAGATHLL 75 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++ +++EAI DL F+YA TAR R K V P +A R +G+ G++FG E Sbjct: 76 EGAKLYDSVREAIEDLSFVYAATARGRGQMKPVHTPAQALPTTAARHAAGERHGVLFGPE 135 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNT 185 R GL N+++AL++AI++FPVNP + SLN++QAVLL +E ++ E ++E++ Sbjct: 136 RTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDVIPFE--IEERSP 193 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT+ L+F D+LE L++RG+FRP+ KK M +L ++F R L ++V L G+V Sbjct: 194 PATREMTLAFFDFLENELDKRGFFRPLTKKPVMSRNLRNMFHRMSLTEQDVRTLWGVVVR 253 Query: 246 LDKFSRQSSRR 256 L + R+ ++ Sbjct: 254 LVEGPRRDPKK 264 >gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium radiotolerans JCM 2831] Length = 261 Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 152/235 (64%), Gaps = 4/235 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +ILV+PQL ENIGM ARAM NF L++LRLVNP++GWP + R +++ A V+D+ ++ Sbjct: 27 PAVILVEPQLAENIGMTARAMANFGLSELRLVNPKNGWPKKGVREAASGATHVLDAAAIY 86 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EAIAD ++ ATTAR R K V AP+EA L R GQ ++FGRER GLTN Sbjct: 87 GSVAEAIADCQYVLATTARERGQMKRVFAPEEAMGELVAR--EGQRTAVMFGRERVGLTN 144 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193 +E++L++AI++FPV+P FPSLN++QAVLL+ + + S + E + PAT+ L+ Sbjct: 145 DEVSLADAIVTFPVSPDFPSLNLAQAVLLVGYAWRQASGRARLPFTGELLSPPATREALI 204 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LE +L+ G++ P EKK+ + ++ + R L ++V RG + L + Sbjct: 205 ALFGSLEAALDGAGFY-PPEKKEIIARNMRDMLHRMSLTEQDVRTFRGALRALTR 258 >gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 266 Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 3/244 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQ+ ENIG ARAM N L +R+V PRDGWP E+A S++ AD +++S +VF Sbjct: 17 PVVILVRPQMAENIGTTARAMANGGLFHMRIVAPRDGWPQERAWRSASGADRILESAQVF 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ADLH ++AT R R+ K VL + A L E G VG++FG ER GL N Sbjct: 77 DTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193 E++A ++A+I +P+NP F SLN++QAV++M +E M + + AT+GEL Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTEDETPPRALMTNETHVATRGELE 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF--SR 251 +F+ +L L++ G+ R +K+ M+ +L F+R E+ +E+ L G+V+ L + +R Sbjct: 197 NFMHHLITDLDDCGFLRNEQKRAGMVRNLRHFFLRGEVTEQELRTLHGVVTELSRGRKAR 256 Query: 252 QSSR 255 Q++R Sbjct: 257 QAAR 260 >gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000] gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000] Length = 263 Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 153/258 (59%), Gaps = 13/258 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +VF Sbjct: 11 PCVILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVF 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL Sbjct: 71 DTLEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLET 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190 ++IAL AI+S P++ F SLN++QAV + +E + E+NV+E PA + Sbjct: 131 DDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEE---PADQA 187 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 LL +LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K Sbjct: 188 ALLGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG- 246 Query: 251 RQSSRRNNVLLQKTEKSE 268 R VL + EK++ Sbjct: 247 -----RGRVLAKLAEKAK 259 >gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 243 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 4/234 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IILV PQLGENIG ARAM NF L LRLV PRDGWP+ A +++ AD V+ RVF Sbjct: 6 PAIILVRPQLGENIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+AD +YATT R R K V+ P++AA ++E+ VGI+FG ER GL Sbjct: 66 PTVAEAVADCAHVYATTVRKRGVTKPVMTPEQAAQTIHEQ---EGGVGILFGPERAGLET 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +++AL+ II+ PVNP F SLN++QAV+L+ +E + ++ V + PA + EL + Sbjct: 123 DDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSKGQTLAQPTKV-DMEPPAPQEELEA 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +LE L++ GYF P+ + + L ++ +P E+ LRG++STL+K Sbjct: 182 MIGHLENMLDKNGYFFPIPRIPTIKRTLRTLLTKPSWNSMEIRTLRGVLSTLEK 235 >gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 256 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 3/241 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD ++++ V Sbjct: 17 PVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGADRILEAATVH 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +A+ADLH +YAT R R+ K VL + A L G VG++FG ER GL N Sbjct: 77 ESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 E++A ++A+I +P+NP F SLN++QAV++M W E+ E E + ATKGEL Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPRELMTNETHV-ATKGEL 195 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +FL +LE L++ G+ R +K+ M+ +L F R E+ +E+ L G+V L R+ Sbjct: 196 ENFLQHLERELDDCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRELAHPRRK 255 Query: 253 S 253 Sbjct: 256 D 256 >gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 266 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 145/238 (60%), Gaps = 7/238 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL +PQ+ ENIG VAR M NF L LRLV PRDGWP E+A S++ A +D+ +VF Sbjct: 8 PCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWPLDNAKVF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EAIADL ++ATTAR R V+ P+EAA L++ + G VG++FG ER GL Sbjct: 68 DTLEEAIADLKLVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGGERAGLET 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190 ++IAL AIIS P++ F SLN++QAV + +E + V E+NV+ PA + Sbjct: 128 DDIALCQAIISIPIDERFRSLNLAQAVSINAYEWKMTVDDRPWVKFEQNVE---PPADQS 184 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LL LE LEE G++ P EKK M+ +L + R L +EV RG+V+ L + Sbjct: 185 SLLGLYAQLEEQLEEAGFYHPPEKKPSMVRNLRAPLARARLTEQEVRTFRGVVTALSR 242 >gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] Length = 248 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 149/236 (63%), Gaps = 1/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A ++D ++ Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRLLDEAQLT 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ EA+AD HF+ ATTAR R K V +P+ A V ERI +G+ V ++FG ER GL N Sbjct: 68 ADVAEAVADCHFVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELL 193 E+IA +NAII+ PVNP FPSLN++Q VLL +E ++ E+ + A + E+ Sbjct: 128 EDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRRAQGAITPERVDMARADWAEQIEIE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 D+ E L E G+F P K + M +L +++ R L R +V +L G++ + ++ Sbjct: 188 KLADHYEARLSEAGFFFPEHKAEGMRLNLRNMWSRMPLTRADVQILHGVLRQMVRW 243 >gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] Length = 272 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/253 (41%), Positives = 152/253 (60%), Gaps = 3/253 (1%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP +P L A P I+LV PQ+GENIG ARAMWNF L +R+V PRDGWPS+ A + + Sbjct: 22 TPSSPVL--PAPIPAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSAVAMA 79 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A ++D + ++L A+ D F +ATTAR R+ K V +P+ A + E+I +GQ V Sbjct: 80 SGAGRLLDEAQHSADLPSALGDCDFTFATTARGRDLTKPVYSPEAAMKLAAEKIAAGQRV 139 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++FG ER GL NE+IA +NAI+S PVNP F SLN++Q VLLM +E M + + + Sbjct: 140 AVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMRAQGEVTHEVTE 199 Query: 182 EQNTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 T KG E+ + E LEE G+F P K M +L +++ R L R +V +L Sbjct: 200 MAGTDWAKGAEVDHLARHYEDRLEEAGFFYPEHKTASMKLNLRNMWSRMPLTRADVQMLH 259 Query: 241 GIVSTLDKFSRQS 253 GI+ + ++ + Sbjct: 260 GILRQMVRWKEKG 272 >gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] Length = 256 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 3/241 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD ++++ V Sbjct: 17 PVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGADRILEAATVH 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +A+ADLH +YAT R R+ K VL + A L G VG++FG ER GL N Sbjct: 77 ESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 E++A ++A+I +P+NP F SLN++QAV++M W E+ E E + ATKGEL Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPHELMTNETHV-ATKGEL 195 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +FL +LE L+ G+ R +K+ M+ +L F R E+ +E+ L G+V L R+ Sbjct: 196 ENFLQHLERELDSCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRELAHPRRK 255 Query: 253 S 253 Sbjct: 256 D 256 >gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] Length = 407 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 169/250 (67%), Gaps = 6/250 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +IL++PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V + Sbjct: 15 GPTVILIEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE+A+++ II++PVNP F SLN++QAVLLM +E + +V+ + + E++ A++ Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTRGELPFAMPERSERASQH 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QMQAFFDNLVSELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 247 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 151/240 (62%), Gaps = 1/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A ++D ++F Sbjct: 8 PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+AD +++ATTAR R K V +P++A + E++ +G+ V ++FG ER GL N Sbjct: 68 DDLGRALADSTYVFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193 E+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E + AT E+ Sbjct: 128 EDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGEVVHEATDLGKGDWATGIEVE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +++ E LEE G+F P EK + M +L +++ R + R +V +L G++ + ++ + Sbjct: 188 KLVEHYEDRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGVMRQMVRWKEKG 247 >gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] Length = 403 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 169/250 (67%), Gaps = 6/250 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V + Sbjct: 15 GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE+A+++ II++PVNP F SLN++QAVLL+ +E + +V+ + + E++ A++ Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLIGYEWFK--LVTRGELPFAMPERSERASQH 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QMQAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199] gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199] Length = 264 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 147/240 (61%), Gaps = 1/240 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ GP ++LV PQLG+NIG ARAM N L +RLV PRDGWP+ +A + ++ A V Sbjct: 10 MADATVGPAVVLVQPQLGDNIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMASGATAV 69 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D RVF EA ADL+++ ATT R R+ K L P+ AA+ L +R+ GQ VG++FG Sbjct: 70 LDRARVFETTAEACADLNYVLATTTRTRDMKKPALTPRTAALELRKRVALGQGVGLLFGP 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER GL NE++ L++A++S P+NP F SLN++QAVLL+ +E + + + ++++P Sbjct: 130 ERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQAEDATPPLTMMDEDSPP 189 Query: 188 TKGELLS-FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + F LE L+E G+F P + +L ++F R + +EV L G++ L Sbjct: 190 VTVKAREFFFTRLEALLDEAGFFYPDHLAPTIKRNLRTLFTRAGMSEQEVQTLHGVLKAL 249 >gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] Length = 410 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 167/252 (66%), Gaps = 6/252 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V Sbjct: 13 AVGPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNVAAQRAAAGADHILKHV 72 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +F ++ A+AD + ATTAR + K V+AP+ AA +I +G +VGI+FGRER G Sbjct: 73 ELFDTVEAAVADCTLLLATTARAHDQAKPVVAPEAAAAEATVQIAAGGHVGILFGRERAG 132 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 L NEE+A+++ II++PVNP F SLN++QAVLLM +E + +V+ + E++ A+ Sbjct: 133 LLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTRAALPFAMPERSERAS 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 191 QHQMQAFFDNLVSELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE 250 Query: 249 FSRQSSRRNNVL 260 R+ + VL Sbjct: 251 -GRKGPAKGGVL 261 >gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] Length = 251 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 13/256 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +VF Sbjct: 1 MILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDT 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL ++ Sbjct: 61 LEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLETDD 120 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKGEL 192 IAL AI+S P++ F SLN++QAV + +E + E+NV+E PA + L Sbjct: 121 IALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEE---PADQAAL 177 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L +LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K Sbjct: 178 LGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG--- 234 Query: 253 SSRRNNVLLQKTEKSE 268 R VL + EK++ Sbjct: 235 ---RGRVLAKLAEKAK 247 >gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 147/252 (58%), Gaps = 7/252 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MT P P +IL +PQL ENIG VAR M NF L LRLV PRDGWP E+A +S Sbjct: 1 MTDENPSASAQPAPPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWAS 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A+ +D +VF +L+ AIADL +YATTAR R V P+E+A L E + G+ Sbjct: 61 ASGANWPLDDAKVFDSLEAAIADLKLVYATTARPRETRLPVYTPRESAGHLAEEVAQGRK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSS 176 VG++FG ER GL +IAL AI+S P++ F SLN++QAV + +E + Sbjct: 121 VGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWKKF 180 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 E NV+E PA + LL ++LE L++ G++ P EKK M+ +L R L +EV Sbjct: 181 ELNVEE---PADQATLLGLYEHLEDELDKAGFYHPPEKKPSMVRNLRVPLARARLTDQEV 237 Query: 237 FLLRGIVSTLDK 248 RG+++ L K Sbjct: 238 RTFRGVITALSK 249 >gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 255 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/248 (39%), Positives = 151/248 (60%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWPSEKA + ++ A + Sbjct: 5 MTDTPSQPAFVLVRPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAGRL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ + EA+AD +++ATTAR R+ K V+ P+ A I GQ V ++FG Sbjct: 65 LDEAGLYGSTAEALADADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLFGP 124 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER GL NE+IAL+NAI+S PVNP FPSLN++Q VLL +E + + + ++ T Sbjct: 125 ERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQTTDTPAEVMEMAGTRY 184 Query: 188 TKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 G E+ + D+ E +EE G+F P K + M ++ +++ R L +V L G++ L Sbjct: 185 ANGAEITALGDHFETRMEEAGFFFPDHKAESMKLNMRNMWSRLPLTLADVQTLHGVLRQL 244 Query: 247 DKFSRQSS 254 ++ +S Sbjct: 245 VRWKDRSG 252 >gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1] gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1] Length = 253 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 8/239 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A PVI+LV PQLGENIG ARAM NF LT++RLV PRDGWP+ +A +++ AD V++ Sbjct: 17 APPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNPQAGPAASGADIVLEGA 76 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRER 129 RVF ++ EA AD +YATT R R K V+ P+EAA R G+ I+FG ER Sbjct: 77 RVFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAA-----RGIHGEPGRSAILFGPER 131 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL +++A++ I++ P+NP F SLN++QAV+L+ +E + ++S V + + PA + Sbjct: 132 SGLETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSKGIALASPPAV-DLDPPAPQ 190 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL + +L+ L E GY+ P ++ L S+ +P +EV LRG++STL+K Sbjct: 191 VELEGLIGHLDRLLAESGYYFPPDRVPATRRTLRSLLTKPAWNAQEVRTLRGVLSTLEK 249 >gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] Length = 293 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 150/249 (60%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P++ILV PQLG+NIG ARAM NF L LRLV PRDGWP+ A++ +A A V+D VRVF Sbjct: 39 PLVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRVF 98 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+AD H++ ATTAR+R F V P + A L R + I+FG E+ GL Sbjct: 99 GTVAEAVADCHYVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAGLET 158 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+A ++A+++ PVNP FPSLN++QAVL++ +E + + + Q PAT+ E Sbjct: 159 EEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQAAGAAPLFTSPYQEDPATQAEREQ 218 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 +L +L+ GYF P K++ + +L ++ +L E+ +L G+V ++ + S Sbjct: 219 LFTHLSTALDRAGYFYPSHKREVLSHNLRTLLANADLSPSELRVLHGVVRQFERHLPEKS 278 Query: 255 RRNNVLLQK 263 + + + Q+ Sbjct: 279 QTDKSVPQE 287 >gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 247 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 148/236 (62%), Gaps = 1/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A ++D ++F Sbjct: 8 PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ D +++ATTAR R K V +P+ A + +++ +G+ V ++FG ER GL N Sbjct: 68 DDLAGALGDRTYVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193 E+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E + AT E+ Sbjct: 128 EDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGDVVHEATDLGKGDWATGIEVE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +++ E LEE G+F P EK + M +L +++ R + R +V +L GI+ + ++ Sbjct: 188 KLVEHYEQRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGIMRQMVRW 243 >gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1] gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1] Length = 257 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/242 (40%), Positives = 152/242 (62%), Gaps = 1/242 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ PVIILV PQL ENIG ARAM N L LRLV+PRDGWP ++A +++ AD + Sbjct: 10 LQPRDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGADNI 69 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +DS+ V +++A+ADLH ++AT R R+ K+++ + AA + G GI+FG Sbjct: 70 LDSLTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILFGP 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTP 186 ER GL N+++A ++ ++ +P+NP F SLN+SQAV++M +E M S + + ++ Sbjct: 130 ERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWWMAQDATPSRQLMTNESHV 189 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ATKGEL +FL +L L+E G+ R +K+ M+ ++ F+R E+ +E+ L GIV L Sbjct: 190 ATKGELNNFLRHLVRELDECGFLRNEQKRSGMIRNIRHFFLRGEVTEQELRTLHGIVHEL 249 Query: 247 DK 248 + Sbjct: 250 SR 251 >gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi DSS-3] Length = 248 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 10/245 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ +A + S+ A ++D +++ Sbjct: 8 PAIVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRLLDEAQLY 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ D +++ATTAR R K V +P+ A + E++ +G+ V ++FG ER GL N Sbjct: 68 DDLPGALGDCTYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 ++IA +NAII+ PVNP + SLN+ Q VLL+ +E M + V + P KGE + Sbjct: 128 DDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQ----TGDVVHLSDAPGPKGEWAT 183 Query: 195 FL------DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L ++ E L+E G+F P EK + M +L +++ R L R +V +L GI+ + + Sbjct: 184 GLEIEKLAEHYEQRLDEAGFFFPPEKAEGMQQNLRNLWSRMRLTRADVQMLHGIMRQMVR 243 Query: 249 FSRQS 253 + + Sbjct: 244 WKERG 248 >gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] Length = 264 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 147/241 (60%), Gaps = 1/241 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQL ENIG ARAM N L LR+V PRDGWP E+A +S+ AD ++D+ +VF Sbjct: 24 PVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILDAAQVF 83 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ADLH I+AT R R+ K V+ + AA L G GI+FG ER GL N Sbjct: 84 ETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPERAGLDN 143 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++A ++ ++ +P+NP F SLN++QAVL+M +E ++ + + T ATKGE+ Sbjct: 144 EDMARADTLVRYPLNPKFMSLNLAQAVLIMAYEWFLTEDMTPPRELMTNETHVATKGEMD 203 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +F+ +L L+E + R +K+ M+ +L F R E+ +E+ L G+VS L R Sbjct: 204 NFMSHLIRDLDETNFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVSELSNARRNR 263 Query: 254 S 254 S Sbjct: 264 S 264 >gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 711 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 98/238 (41%), Positives = 147/238 (61%), Gaps = 1/238 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD ++++ V Sbjct: 470 PVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVH 529 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +AIADLH ++AT R R+ K+VL + A L + G G++FG ER GL N Sbjct: 530 DSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDN 589 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193 E++A ++A+I +P+NP F SLN++QAV++M +E M + + ATKGEL Sbjct: 590 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELD 649 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + R Sbjct: 650 NFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 707 >gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] Length = 256 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 3/236 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IILV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A V+D+V ++ Sbjct: 18 PSIILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDNVSIY 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++A+AD ++++ATTAR R+ K +++P+ A + + SGQ VGI+FG ER GL N Sbjct: 78 DDTRDAVADCNYVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERAGLEN 137 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192 ++I+ +NAIIS PVNP F SLN+ Q VLL+ +E + N S ++ + K E+ Sbjct: 138 DDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRRLANQAPSELFDLSKTRWAEAK-EV 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 S D+ E LEE +F P K + +L ++ R L +V L GI+ L + Sbjct: 197 ESLQDHFEEKLEEAHFFFPEHKAAHLKKNLRNMLSRLPLTINDVGLFHGILRALTR 252 >gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 248 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 12/251 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + +A PVI+LV PQLGENIG ARAM NF LT+LRLV+PRDGWP+ A +SA AD V Sbjct: 1 MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + RVF L EA+AD IYATT R R K+VL P+ AA ++ + G++ +FG Sbjct: 61 LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQ--PGRSA-YVFGP 117 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK------ 181 ER GL +++AL++AI++ P+NP F SLN++QAV+L+ +E ++ V + +V Sbjct: 118 ERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH--VPGDGHVALASPPE 175 Query: 182 -EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + PA GEL + + L++ GYF P E++ L L + + ++ ++ Sbjct: 176 VPLDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMH 235 Query: 241 GIVSTLDKFSR 251 GI+ L + R Sbjct: 236 GIIVALGRAPR 246 >gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] Length = 249 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 1/241 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D + Sbjct: 8 PAIVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRLLDEAQHT 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A++D HF+ ATTAR+R+ K+V P+EA RI +GQ V ++FG ER GL N Sbjct: 68 DTLADALSDCHFVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++A +NAI++ PVNP F SLN++Q VLLM +E + + K T A E+ Sbjct: 128 EDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQRATADIAPKAEALAGTEFAEAHEVE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + E L+E G+F P K + M +L +++ R L R +V +L G++ + +++ + Sbjct: 188 HLARHYEQQLDEAGFFFPETKAEGMKVNLRNMWSRMPLTRADVQMLHGMMRQMVRWANKK 247 Query: 254 S 254 + Sbjct: 248 A 248 >gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 269 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 140/234 (59%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL Q+ ENIG VAR M NF LT LRLV PRDGWP E+A ++++ AD V++ VRVF Sbjct: 15 PAVILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWATASGADWVLEGVRVF 74 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EA+ADL+ ++ATTAR R + V P+EA +L + SG G++FG ER GL Sbjct: 75 DSVAEAVADLNTVFATTARPRETRQPVRTPREAGRILYDDTASGLKTGLLFGGERAGLET 134 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +IAL I++ P++P SLN++QAV + +E + + ++ PA+ L+ Sbjct: 135 TDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFRDSEPPASNDLLVG 194 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++LE LE G+F P EKK+ M +L + R +EV +RG + L K Sbjct: 195 MYEHLEAELELGGFFYPPEKKRSMSQNLRVMLGRAAFSEQEVATMRGAIHALAK 248 >gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] Length = 251 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 1/244 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + +N+ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++ A + ++ A Sbjct: 3 ETRNNPATPAFVLVRPQMGENIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGR 62 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++D+ + +L +I D F++ATTAR R+ K V +P+EA ERI +G+ V ++FG Sbjct: 63 LLDNASLSPDLPASIEDCSFVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFG 122 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ER GL NE+IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + + V+ T Sbjct: 123 PERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMRATGDVTPQAVEMSGTE 182 Query: 187 -ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A E+ + E LEE G+F P K + M +L + + R + R +V +L G++ Sbjct: 183 WAENIEVEHLATHYEDRLEEMGFFFPAHKSQSMRMNLRNFWSRMPMTRADVQMLHGMMRQ 242 Query: 246 LDKF 249 + ++ Sbjct: 243 MVRW 246 >gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] Length = 246 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/242 (40%), Positives = 148/242 (61%), Gaps = 6/242 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP+++A + ++ A ++D ++F Sbjct: 8 PAFVLIRPQMGENIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRLLDEAQLF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + AIAD F+YATTAR R K VL+P+ A RI +G V ++FG ER G+ N Sbjct: 68 EDTAAAIADCDFVYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGPERAGMEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---ATKGE 191 ++IA +NAIIS PVNP FPSLN++Q VLL+ +E V+ E + P AT+ E Sbjct: 128 DDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRR---VTGEVVALRHDAPGDWATQLE 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + D+ + L+E G+F P K M +L +++ R L R +V +L GI+ + ++ Sbjct: 185 VEKLADHYQDRLDEAGFFFPDHKAANMQMNLRNLWSRLPLTRADVQMLHGILRQMVRWKE 244 Query: 252 QS 253 + Sbjct: 245 RG 246 >gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 267 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 148/248 (59%), Gaps = 7/248 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 AP L + P +IL PQL +NIG VAR M NF L +LRLV PRDGWP ++A ++S+ A Sbjct: 7 APPLDPNLTLPCVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDRAWATSSGA 66 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +D +VF+ + EA+ADL +YATTARNR V+ P++ A+ Q G++ Sbjct: 67 NWPLDGAKVFATVAEAVADLKTVYATTARNREVHLPVVTPRQTAVEAYAAAQGHQKTGLL 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNV 180 FG ER GL +IAL +AI++ PV+P F SLN++QAV ++++E M+ + +N+ Sbjct: 127 FGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWRLLVMDAPKAAFTQNM 186 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 E PA L +LE LE G+F P EKK+ ML +L + R + +E+ R Sbjct: 187 DE---PADLKFLHGLYGHLEDELEAAGFFFPPEKKESMLRNLRVVLNRARMTEQEIRTWR 243 Query: 241 GIVSTLDK 248 G+V+ L K Sbjct: 244 GVVTALTK 251 >gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 261 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 143/234 (61%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV++L Q+ +NIG VAR M NF L++LRLV+PRDGWP ++A ++++ AD V+D V+VF Sbjct: 7 PVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGVKVF 66 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EAIADL+ ++ATTAR R + V P+E+A +L + SG G++FG ER GL Sbjct: 67 DSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAGLET 126 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +IAL I + P++P SLN++QAV + +E + + +E PA+ LL Sbjct: 127 GDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDLLLG 186 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++LE L+ G+F P EK++ M +L + R +EV +RG + L K Sbjct: 187 MYEHLEAELDNGGFFYPPEKRRSMSQNLRVMLGRAAFTEQEVATMRGAIHALAK 240 >gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus PAl 5] gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 1/238 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD ++++ V Sbjct: 17 PVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVH 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +AIADLH ++AT R R+ K+VL + A L + G G++FG ER GL N Sbjct: 77 DSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193 E++A ++A+I +P+N F SLN++QAV++M +E M + + ATKGEL Sbjct: 137 EDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELD 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + R Sbjct: 197 NFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 254 >gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 384 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 149/235 (63%), Gaps = 6/235 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+LV PQLGENIG ARAM NF LT+LRLV PRDGWP+ A S+A AD V++ +VF Sbjct: 139 PAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRDGWPNPDAGPSAAGADDVLERAQVF 198 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+AD IYATT R R K V+ P+EAA ++ + +G++ ++FG ER GL Sbjct: 199 ATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQAIHSQ--AGKSA-VLFGPERSGLET 255 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193 E++AL+ AI++ P++P F SLN++QAV+L +E + + + E+ +E PA + EL Sbjct: 256 EDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSKGAEL--EQPTQEDLLPPAPQAELD 313 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +LE L+ +GYF P + + L ++ +P E+ LRG++S+L + Sbjct: 314 DLIAHLEAMLQPKGYFLPANRTEATRRTLRTVLTKPGWNHLEIRTLRGVLSSLQR 368 >gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 247 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 142/234 (60%), Gaps = 7/234 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV+PQ+GENIG R M NF + +LR+VNPRDGWP+ KA S A + V+D RVF Sbjct: 7 PVFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKA-VSMATSSPVLDDARVF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA+AD ++A+TA+ RN K V +E + + +GQ VG++FG E+ GL N Sbjct: 66 DTLEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 I LSNAII+ PV+ F SLN++ AV + W E + ++ K + AT+ E+ Sbjct: 126 AAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWRAGE----PTPEDFKPLDDRATEQEM 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +F +LE L+ G+F P EK M+ +L + F R L ++EV LRG++ L Sbjct: 182 TAFYAHLEQELDRAGFFYPPEKTPLMMQNLINAFARGGLTQQEVRTLRGVIKAL 235 >gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] Length = 245 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +L+ PQ+GENIG ARAMWNF L ++R++ PRDGWP+EKA + ++ A ++D +++ Sbjct: 8 PAFVLIQPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRLLDEAQLY 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAIAD F+YATTAR R K V++P+ A + RI G+ V I+FG ER G+ N Sbjct: 68 ATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGPERAGMEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 ++IA +N II+ PVNP FPSLN++Q VLL +E + ++ ++ A ++ Sbjct: 128 DDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRRAADAVVDERIEMAGAEWANNADIE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + E L+E G+F P K + M +L +++ R L R + L GI+ L Sbjct: 188 ALATHFEERLDEAGFFFPEHKAQSMKLNLRNLWSRMPLTRADTATLHGILRQL 240 >gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] Length = 246 Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 142/239 (59%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP++KA + ++ A ++D ++F Sbjct: 8 PAFVLIRPQMGENIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRLLDEAQIF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + AIAD ++YATTAR R K VL P+ A R GQ V ++FG ER G+ N Sbjct: 68 DDTAGAIADCDYVYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGPERSGMEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 ++IA +NAIIS PVNP FPSLN++Q VLL +E ++ V A + E+ Sbjct: 128 DDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQREAVEVDASRVDAAGDWAEQIEIEK 187 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 ++ E LE G+F P K + M +L +++ R + R +V +L G++ + ++ + Sbjct: 188 LSEHYEERLEAAGFFYPEHKAENMKLNLRNMWSRMPMTRADVQMLHGMMRQMVRWKERG 246 >gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 258 Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 145/235 (61%), Gaps = 1/235 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV PQ+ ENIG ARAM N L +RLV PRDGWP E+A +++ AD +++S VF Sbjct: 17 PVIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGADRILESATVF 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ADLH ++AT R R+ K V+ + A L G G++FG ER GL N Sbjct: 77 DTVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193 E++A ++A+I +P+NP F SLN++QAV++M +E M + + + ATKGEL Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTQDDTPPRELMTNETHVATKGELD 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + Sbjct: 197 NFMRHLIGDLDECGFLRNEQKRPGMVRNLRHFFERGEVTEQELRTLHGVVTELAR 251 >gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh 114] Length = 251 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 145/235 (61%), Gaps = 1/235 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV PQ+GENIG ARAMWNF L +R+V PRDGWP++ A + ++ A V+D+ ++ Sbjct: 12 AFVLVRPQMGENIGASARAMWNFGLEHMRVVAPRDGWPNQAAVALASGAGRVLDNAQLSD 71 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L ++ D F++ATTAR R+ K V +P+EA V +RI +G+ + ++FG ER GL N+ Sbjct: 72 DLPGSVGDCSFVFATTARPRDLTKPVFSPEEAMRVAAQRIAAGERIAVLFGPERAGLEND 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194 +IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + V T A E+ Sbjct: 132 DIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMRATHDVTPHTVDMSGTQWADHIEVEH 191 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + E LEE G+F P K M +L + + R + R +V +L G++ + ++ Sbjct: 192 LATHYEDRLEEMGFFFPAHKSHSMRVNLRNFWSRMPMTRADVQMLHGMMRQMVRW 246 >gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] Length = 281 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 152/239 (63%), Gaps = 6/239 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68 GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++ Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGALKKGAHAAAAGAVHLL 75 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++ +EA+ADL+F++ATTAR R K VL P EA I G G++FG E Sbjct: 76 EGAKLYDTPEEAVADLNFVFATTARERGQHKPVLTPAEALPGAALAIAGGAKGGVMFGPE 135 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GL+N+E+AL++ +I+FPVNP + SLN++QAVLL+ +E M S + V + +P Sbjct: 136 RTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMRASTEAKAPFVADPRSPPA 195 Query: 189 KGEL-LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ LSF YLE LE G+FRP++K M ++ +IF R +L ++V LRG + L Sbjct: 196 PREMVLSFFAYLEGELERVGFFRPLDKAPVMRRNIKNIFHRLDLSAQDVSTLRGAIVRL 254 >gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] Length = 350 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 142/236 (60%), Gaps = 4/236 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V+D Sbjct: 113 TAPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVLDK 172 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 VF L +A+AD +YATT R R K V+ P+EAA ++ +G++ +FG ER Sbjct: 173 AEVFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIH--AATGRSA-YVFGPERS 229 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL E++AL+ I++ P+NP F SLN++QAV+L +E + + + + V + PA + Sbjct: 230 GLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASL-EQPTVVDLGEPAPQA 288 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 289 ELEGMIGQFETLLESAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 344 >gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] Length = 257 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 147/240 (61%), Gaps = 1/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ A ++++ V Sbjct: 17 PVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRILEAATVH 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ DLH ++AT R R+ K +L + AA L E G GI+FG ER GL N Sbjct: 77 DTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 ++IA ++++I +P+NP F SLN++QAV++M +E + + ++ T ATKGEL Sbjct: 137 DDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRTLQTHKTHVATKGELE 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L GIV+ L + R + Sbjct: 197 NFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVTELARGRRGA 256 >gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 257 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 147/240 (61%), Gaps = 1/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ A ++++ V Sbjct: 17 PVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRILEAATVH 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ DLH ++AT R R+ K +L + AA L E G GI+FG ER GL N Sbjct: 77 DTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPERAGLDN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 ++IA ++++I +P+NP F SLN++QAV++M +E + + ++ T ATKGEL Sbjct: 137 DDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRKLQTHKTHVATKGELE 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L GIV+ L + R + Sbjct: 197 NFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVTELARGRRGA 256 >gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] Length = 247 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 146/237 (61%), Gaps = 3/237 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A ++D + Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRLLDEALLV 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ A+ D ++ ATTAR R K VL+P+ A +V E+I +G+ V ++FG ER GL N Sbjct: 68 ADTAAAVGDCTYVLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 ++IA +NAII+ PVNP F SLN+ Q VLLM W+ +V ++ + + A + E+ Sbjct: 128 DDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQRAAGQVVPERVDLAKTDW-AAQVEV 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + + E LEE G+F P K + M +L +++ R + R +V L G++ + ++ Sbjct: 187 EALAAHYEERLEEAGFFFPEHKVESMKTNLRNMWSRMPMTRADVQTLHGVMRQMVRW 243 >gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1] Length = 244 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 2/239 (0%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 PQL ENIG ARAM N LT LRLV PR W S++A ++++ AD V+ ++F EA+ Sbjct: 3 PQLSENIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEAV 62 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ADL+ ++ATTARNR K V PK AA+ + GQ G++FG ER GL N+++AL++ Sbjct: 63 ADLNRVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALAD 122 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDYL 199 +++ P+NP + SLN++Q VLL+ +E + + + K PATK +L F D+L Sbjct: 123 TVVTVPLNPDYSSLNLAQCVLLVAYEWYQAAAPTLPERHMTKGAEPPATKEKLQHFFDHL 182 Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 E L+E G+ R +K+ M+ ++ ++F R L +EV L GIV L + + + +N Sbjct: 183 ERELDECGFLRIADKRPVMVRNIRNLFQRAHLTGQEVQTLHGIVHELVTYRHRKGKSHN 241 >gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 351 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 136/232 (58%), Gaps = 4/232 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V+D VF Sbjct: 118 PVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVLDKAEVF 177 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+AD +YATT R R K V+ P+EAA E + +FG ER GL Sbjct: 178 ETLADAVADCAHVYATTVRKRGVTKPVVTPEEAA---REIHAAAGRSAYVFGPERSGLET 234 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E++AL+ I++ P+NP F SLN++QAV+L +E + + + + V + PA + EL Sbjct: 235 EDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASL-EQPTVVDLGEPAPQAELEG 293 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 294 MIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 345 >gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 249 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 149/249 (59%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A PVI+LV PQLGENIG ARAM NF LT++R+VNPRDGWP+ A ++A AD V+D Sbjct: 2 ANKPVIVLVRPQLGENIGKAARAMLNFGLTEMRIVNPRDGWPNPSAGPAAAGADIVLDEA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VFS+ EA+AD +YATT R R K V+ P AA +++ G++ I+FGRE G Sbjct: 62 KVFSSTAEAVADCEHVYATTVRKRGVTKPVVGPDGAARLIHAE--PGRHA-ILFGREASG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE----KNVKEQ 183 L E++AL+ I++ P+NP F SLN++QAV+L +E E SS+ E Sbjct: 119 LETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSRIGREAEDASSDLVQPTAEDEA 178 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 PA + +L + + E L+ RGYF P +++ L S+ +P EV LRGI+ Sbjct: 179 LPPAPQDDLEGLIGHFEKLLDPRGYFLPESRREATARTLRSVLTKPGWNHLEVRTLRGIL 238 Query: 244 STLDKFSRQ 252 STL++ R Sbjct: 239 STLERPPRD 247 >gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] Length = 247 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 145/236 (61%), Gaps = 1/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +L+ PQ+GENIG ARAMWNF L ++RLV PRDGWP+ A + ++ A ++D ++F Sbjct: 8 PAFVLLRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRLLDEAQLF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + AI+D F+YATTAR R K V+ P+ A R+ G+ V ++FG ER G+ N Sbjct: 68 DTTEAAISDTTFVYATTARPRELTKPVMTPEAAMSDAAARVARGEKVAVMFGPERAGMEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 +IA ++AI+S PVNP FPSLN++Q VLL+ +E + ++ +K Q T A + E+ Sbjct: 128 ADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRRATSQTAPVRLKGQRTELAERLEVE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 D+ E L E G+F P K + M +L +++ R L R +V +L GI+ + ++ Sbjct: 188 RLGDHYEERLAEAGFFFPEHKAEGMRLNLRNLWSRMPLTRADVQMLHGILRQMVRW 243 >gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 267 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 138/234 (58%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+IL Q+ ENIG VAR M NF L +LRLV+PRDGWP ++A ++ AD V+D V+VF Sbjct: 7 PVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDGVQVF 66 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ A ADL ++ATTAR R + V P++A+ VL + SG VG++FG ER GL Sbjct: 67 DSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERAGLET 126 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +IAL I++ P++P SLN++QAV + +E + + N +E PA+ + Sbjct: 127 SDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWRTLVLDAPPPNFREGEPPASGALAVG 186 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++LE L+ G+F P EK + M +L + R +EV RG++ L K Sbjct: 187 MYEHLERELDAAGFFHPPEKFRSMSQNLRVMLGRAAFTEQEVATFRGVIHALSK 240 >gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 255 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S GP IILV PQL ENIG ARAM N LT +R+V PR+GW SEKA ++++ AD ++ Sbjct: 6 TSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLL 65 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S +VF K+A+ADL+ ++ATT R+R K V P+EAA + GQ G++FG ER Sbjct: 66 SAKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPER 125 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPAT 188 GL N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + K PAT Sbjct: 126 TGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGAEGPAT 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K +L+ F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L Sbjct: 186 KEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVT 245 Query: 249 FSRQSS 254 + Q Sbjct: 246 YRHQKG 251 >gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] Length = 247 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 147/241 (60%), Gaps = 3/241 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+E+A + ++ A ++D + Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRLLDEALLV 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+AD F+ ATTAR R K VL+P+ A + E+I +G+ V ++FG ER GL N Sbjct: 68 ESTADAVADCSFVLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 ++IA +NAII+ PVNP F SLN+ Q VLL W+ +V ++ + + A + E+ Sbjct: 128 DDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQRAAGQVVPERVDLAKTDW-AAQVEV 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + + E LEE G+F P K M +L +++ R + R +V L G++ + ++ + Sbjct: 187 EALAAHYEERLEEAGFFFPEHKAGSMKTNLRNMWSRMPMTRADVQTLHGVMRQMVRWKAR 246 Query: 253 S 253 S Sbjct: 247 S 247 >gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] Length = 260 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 149/254 (58%), Gaps = 3/254 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A ++D + Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRLLDEAILA 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+ D F++ATTAR R K V +P+ A + ++I +G+ V ++FG ER GL N Sbjct: 68 QDLPEALEDCSFVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 E+IA +NAIIS PVNP F SLN+ Q VLL W+ +V ++ + + AT ++ Sbjct: 128 EDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQTQDVVDEAIDLGKTDW-ATGRDV 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + + + E L+E G+F P K M ++F R L R +V +L G++ + ++ + Sbjct: 187 EALVRHYEDRLDEAGFFFPATKAAGMKVVFRNMFSRLPLTRADVQMLHGVMRQMVRWRHK 246 Query: 253 SSRRNNVLLQKTEK 266 TEK Sbjct: 247 DDPAQGEADPSTEK 260 >gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 146/235 (62%), Gaps = 1/235 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IIL+ PQ+GENIG ARAM NF + + +V+PRDGWP+ +A+S +A A V+D+V++F Sbjct: 11 PSIILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTVQLF 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +A+ +L+F++ATTAR R+ K V++P+ A + G+ VG +FG E GL+N Sbjct: 71 DKTSDALKNLNFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSGLSN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKGELL 193 E+IA +N ++S PVNP F SLN+SQ VLL+ +E +I + E A+ E+ Sbjct: 131 EDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQTIEIPHEIMALAGTEFASINEVQ 190 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +D E +L+ R +F P K + ML ++F R +L + +V +L GI ++K Sbjct: 191 KLVDRSEEALQARNFFWPKNKSESMLLSFRNMFSRLKLTKMDVQILHGIFKAMEK 245 >gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 251 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +A+ PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A ++A AD Sbjct: 3 EAEGAARHPVIVLVRPQLGENIGKAARAMLNFGLAEMRLVSPRDGWPNPSAGPAAAGADI 62 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V++ +VF L EA+AD +YATT R R K VL P++AA + + + IIFG Sbjct: 63 VLERAQVFPTLAEAVADCSHVYATTVRKRGVTKPVLTPEQAA---RDIVSASGRSAIIFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ER GL +++AL+ AI++ P+NP F SLN++QAV+L +E ++ + + V++ P Sbjct: 120 PERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH-VDLVQPTVEDMLPP 178 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E + L LE RGYF P + L ++ +P EV +RG++S L Sbjct: 179 APQEEFEGMFEQLCTMLEPRGYFEPESRAASTRRTLRTMLTKPGWNHLEVRTMRGVLSAL 238 Query: 247 DK 248 + Sbjct: 239 RR 240 >gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] Length = 249 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 146/241 (60%), Gaps = 1/241 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A ++D ++ Sbjct: 8 PHFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLA 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG ER GL N Sbjct: 68 QDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELLRQGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193 ++IA +NAII+ PVNP F SLN++Q VLL +E + V E ++ AT E+ Sbjct: 128 DDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQEEQVPDETFEIGKSDWATGQEIE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + + + E L E GYF P EK M +++ R L R +V +L G++ + ++ + Sbjct: 188 ALVTHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMRLTRADVQMLHGVMRQMVRWKQHG 247 Query: 254 S 254 S Sbjct: 248 S 248 >gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] Length = 280 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 144/236 (61%), Gaps = 7/236 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D R+ Sbjct: 40 PAFVLVRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLA 99 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L AI D F++ATTAR R K V +P+ A + E+I +G+ V ++FG ER GL N Sbjct: 100 EDLAGAIEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLEN 159 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATKG 190 E+IA +NAIIS PVNP F SLN+ Q VLL +E E + V ++ + A+ Sbjct: 160 EDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDW---ASHA 216 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++ + +++ E L++ G+F P +K M ++F R L R +V +L GI+ + Sbjct: 217 DVDALVNHYEDRLDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQM 272 >gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 243 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 6/242 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K PV++LV PQLGENIG ARAM NF L +LR+V PRDGWP+ A ++A AD V++ R Sbjct: 7 KKPVVVLVRPQLGENIGKAARAMLNFGLVELRMVTPRDGWPNPDAGPAAAGADIVLEKAR 66 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF + EA+AD +YATT R R K V P+EA+ E + I+FG ER GL Sbjct: 67 VFDSTAEALADCSHVYATTVRKRGVTKPVYTPEEAS---REMAQADGRSAILFGPERSGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191 E++AL+ AI++ P+NP F SLN++QAV+L +E S+V + ++Q PA + E Sbjct: 124 ETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKHESLVQPTQ--EDQLPPAPQKE 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + ++E LE +GYF P + + L + +P EV LRG++S+L + ++ Sbjct: 182 LEGLIAHMEGMLESKGYFLPESRAEATRRTLRGVLTKPGWNHLEVRTLRGVLSSLQRDAK 241 Query: 252 QS 253 +S Sbjct: 242 RS 243 >gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040] gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040] Length = 249 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D ++ Sbjct: 8 PDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEAQLA 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG ER GL N Sbjct: 68 QDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193 ++IA +NAII+ PVNP F SLN++Q VLL +E + V+ E ++ AT E+ Sbjct: 128 DDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEWATNQEVE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + +++ E L E GYF P EK M +++ R +L R +V +L G++ + ++ ++ Sbjct: 188 ALVNHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMQLTRADVQMLHGVMRQMVRWKQR 246 >gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] Length = 270 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 1/246 (0%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y +Q+ P ILV PQ+GENIG ARAM NF L +LR+V PRDGWP+ KA + ++ Sbjct: 18 YLAAMQDPQASPAFILVRPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAVAMASG 77 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + +++ AIAD +++ATTARNR K V+ P+ A I +G+ VG+ Sbjct: 78 AGRLLDFAGPYPDVQAAIADCDYVFATTARNRELTKPVMTPERAMEHARALIAAGKRVGV 137 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FG ER GL N ++ L+NAI+S PVNP FPSLN+ Q VLL+ +E + + + Sbjct: 138 LFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQTACVPPEVMAMA 197 Query: 184 NTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 T G E+ D+ E LE G+F P K M L +++ R L R +V L G+ Sbjct: 198 GTDFASGIEVEKLGDHFEDRLEAAGFFFPATKAAGMKLVLRNMWSRLHLTRADVQSLHGM 257 Query: 243 VSTLDK 248 + + + Sbjct: 258 LRQIAR 263 >gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 146/240 (60%), Gaps = 3/240 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A ++D ++ Sbjct: 8 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLS 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L +++ D F++ATTAR R K V +P+ A + E+ +GQ V ++FG ER GL N Sbjct: 68 ATLADSLEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192 E++A +NAII+ PVNP F SLN+ Q VLL W +V ++ + + A ++ Sbjct: 128 EDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQVEEVVDVTTDLGKSDW-ANHADV 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + +++ E LEE G+F P EK M ++F R L R +V +L G++ + ++ + Sbjct: 187 DALVNHYEGRLEEAGFFFPPEKAPGMKVVFRNLFSRLPLTRADVQMLHGVMRQMVRWKEK 246 >gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] Length = 257 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 3/243 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ A + ++ A ++D Sbjct: 16 KIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSAVAMASGAGRLLDEAV 75 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L A+ D F++ATTAR R+ K V +P+ A E I GQ V ++FG ER GL Sbjct: 76 VHDDLAGALGDAAFVFATTARERDLTKQVYSPEAAMAKAAELIAQGQRVAVMFGPERAGL 135 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPATKG 190 N++IA +NAI+S PVNP F SLN++Q VLLM +E M + ++V + + N A Sbjct: 136 ENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMRAQGAVVPEQVEMAGTNW-ADNS 194 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ + E LE G+F P K M +L +++ R L R +V +L G + + ++ Sbjct: 195 EVEHLARHFEERLEVAGFFYPEHKATSMKVNLRNMWSRLPLTRADVQMLHGTLRQMVRWK 254 Query: 251 RQS 253 + Sbjct: 255 ERG 257 >gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 247 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 147/236 (62%), Gaps = 1/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG +RAMWNF+L ++RLV PRDGWP+ KA + ++ A ++D ++F Sbjct: 8 PSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRLLDEAQLF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 EA+ D +++ATTAR R K +P+ A + E+I G+ V ++FG ER G+ N Sbjct: 68 QTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGPERAGMEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELL 193 ++IA +NA+I+ PVN F SLN++Q VLL+ +E ++ E+ + A++GE Sbjct: 128 DDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQVGNITHERTEMAKTVWASQGETE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + + E L++ G+F P EK + M +L +++ R L R +V +L G++ + ++ Sbjct: 188 ALAKHYEDRLDDAGFFFPPEKVESMQMNLRNMWSRMPLTRADVQMLHGVLRQMVRW 243 >gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] Length = 257 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 141/240 (58%), Gaps = 1/240 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A P I+L+ PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A + Sbjct: 13 MPTDAPQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRL 72 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D V ++ IAD ++YATTAR R K V +P+ A RI G+ V +IFG Sbjct: 73 LDEAEVSDDVASGIADRTYVYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGP 132 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-P 186 ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E + V+ Q P Sbjct: 133 ERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRRAVAEVVDVVVQGQTVEP 192 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + ++ + + E L + G+F P K M +L +++ R + R +V +L G++ L Sbjct: 193 ADQRDIEALARHYEDRLNDAGFFYPEHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 252 >gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1] Length = 247 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 1/245 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP IILV PQL ENIG ARAM N L+ +R+V PR+GW SEKA ++++ AD V+ + +V Sbjct: 3 GPAIILVRPQLSENIGTAARAMLNCGLSDMRIVAPREGWLSEKAIAAASGADRVLLAAKV 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + K+A+ADL+ ++ATT R+R K V P+EAA + G G++FG ER GL Sbjct: 63 FESTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAADAEGLKFGVLFGPERTGLE 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + K PA+K +L Sbjct: 123 NDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQCEAAETLPAMTKGSEGPASKEKL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L + + Sbjct: 183 IFFFEHLERELDSCGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTYRHK 242 Query: 253 SSRRN 257 + Sbjct: 243 KGEKG 247 >gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] Length = 248 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 147/246 (59%), Gaps = 11/246 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A ++D + Sbjct: 8 PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEALLA 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ D F++ATTAR R K V P+ A + E+I SG+ V ++FG ER GL N Sbjct: 68 PDLPGALEDCTFVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGPERAGLEN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP------AT 188 E+IA +NAIIS PVNP F SLN+ Q VLL +E + ++V E T AT Sbjct: 128 EDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQA-----EDVPEVVTDLGKSDWAT 182 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ + +++ E L+E G+F P +K M ++F R L R +V +L G++ + + Sbjct: 183 GKDVEALVNHYEDRLDEAGFFFPPDKAPSMKVVFRNMFSRMPLTRADVQMLHGVMRQMVR 242 Query: 249 FSRQSS 254 + + S Sbjct: 243 WKEKDS 248 >gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis HTCC2601] gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. HTCC2601] Length = 247 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A + Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + ++ A+ D ++ATTAR R K V +P+EA ERI G V ++FG Sbjct: 61 LDDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186 ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + + ++ Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAEIEARRDEMAGAAW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ E+ ++ E LEE G+F P K M L +++ R L E+V L GI+ + Sbjct: 181 ASGIEVEKLAEHYEQRLEEAGFFFPDHKAPAMKLTLRNLWSRMPLTSEDVRTLHGILRQM 240 Query: 247 DKF 249 ++ Sbjct: 241 VRW 243 >gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] Length = 245 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 144/240 (60%), Gaps = 1/240 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A P I+L+ PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ A + ++ A + Sbjct: 1 MPTDAPQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRI 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D V +++ + IAD ++YATTAR R K V +P+ A RI G+ V ++FG Sbjct: 61 LDEAEVSTDVADGIADRTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-P 186 ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E + V+ Q P Sbjct: 121 ERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRRAVGEVVDVVVQGQTVEP 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + ++ + + E L++ G+F P K M +L +++ R + R +V +L G++ L Sbjct: 181 ADQRDIEALARHYEDRLDDAGFFYPDHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 240 >gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides ATCC 17029] gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 243 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 1/233 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193 E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + G E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 D+ E LE G+F P EK M +L +++ R L R +V L G++ + Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQI 237 >gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] Length = 247 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A + Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + ++ A+ D I+ATTAR R K V +P+EA RI +G V ++FG Sbjct: 61 LDDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186 ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + + ++ Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAGIEARRDEMAGAEW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ E+ ++ E L+E G+F P K M L +++ R L RE+V L GI+ + Sbjct: 181 ASAIEVEKLSEHYEERLDEAGFFFPDHKAPAMKLTLRNLWSRMPLTREDVRTLHGIMRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKERG 247 >gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 138/230 (60%), Gaps = 1/230 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PSVAEAIRDCDYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193 E++AL++AI++ PVNP F SLN++Q VLL+ +E + + + G E+ Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 D+ E LE G+F P EK M +L +++ R L R +V L G++ Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLALTRADVQTLHGML 234 >gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] Length = 258 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 151/260 (58%), Gaps = 3/260 (1%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ P P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+E+A + Sbjct: 1 MSDATPPSVTPGGQPAFVLVRPQMGENIGAAARAMWNFGLDRMRVVDPRDGWPNERAVAL 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A ++D+ ++ +L A++D +++ATTAR+R K ++ P+ A + G Sbjct: 61 ASGAGRLLDNAGLYQDLPGALSDCTYVFATTARDRGLTKPIVTPERAMEQTRAILAEGGK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKN 179 VG++FG ER GL N +IA ++AIIS VNP FPSLN++Q VLL +E + S V+ E Sbjct: 121 VGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQGSTVAPEVM 180 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + A+ E+ + E LEE G+F P K M L +++ R L R +V L Sbjct: 181 ALAKTDFASNLEVEKLGAHYEERLEEAGFFWPPAKADSMKLTLRNLWGRLNLTRADVQTL 240 Query: 240 RGIVSTLDKFSRQSSRRNNV 259 G++ + +++ RR ++ Sbjct: 241 HGVMRQMVRWA--EGRRKDL 258 >gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 248 Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 5/236 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + P IIL PQLGENIG AR M NF LT LRLV PRDGWPS A + SA A V Sbjct: 3 RAPAIILHAPQLGENIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQVS 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF L+EA+ L + ATTAR R K+V +A L + +GQ+ ++FG E+ GL Sbjct: 63 VFETLEEAMTGLTYTIATTARPRGMEKAVFGAPDAVGALKRQ--AGQSA-VLFGGEKSGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKG 190 NE +AL +AI+++PVNP F SLN++QAV + W + + PA + Sbjct: 120 PNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCHQWGASAGLEGKFDGTTEGLGAPALRE 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL+ ++ E LE GYF P EK M+ +L + +R + ++EV RG + L Sbjct: 180 ELIGMFEHFEAELERAGYFYPPEKTPVMVTNLRNALVRAQWTQQEVRTFRGAIKAL 235 >gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 1/235 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL PQ+ ENIG VAR M NF L LR+V+PRDGWP E+A + S+ A +D+ ++ Sbjct: 18 PCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSGAHWPLDNATIY 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAIADL+ +YATTAR R V P++ A G G++FG ER GL Sbjct: 78 ETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGLLFGAERAGLET 137 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193 +IAL ++I++ PV+P F SLN+SQAV ++++E ++ E K + PA +L Sbjct: 138 SDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWRLKVMDTPKEAFTKNMDQPAALEKLH 197 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE LE+ G+F P EKK+ M +L R +L +EV RG+V+ L K Sbjct: 198 GLYGHLEDELEKAGFFFPPEKKESMQRNLRVALNRAQLTEQEVRTWRGVVTALVK 252 >gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] Length = 243 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 136/230 (59%), Gaps = 1/230 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193 E++AL+NAI++ PVNP F SLN++Q LL+ +E + + + G E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 D+ E LE G+F P EK M +L +++ R L R +V L G++ Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGML 234 >gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] Length = 243 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 9/243 (3%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++ PVI+LV PQLGENIG ARAM NF L ++RLV PRDGWP+ +A +++ AD V+ Sbjct: 3 QPPSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIF 125 + +V+ ++ +A+AD +YATT R R K V+ P+EAA R VG +F Sbjct: 63 EQAKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAA-----REIHADTVGRAAFLF 117 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G ER GL +++A++ I++ P+NP F SLN++QAV+L+ +E + ++ E Sbjct: 118 GPERSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSKGVDLAQPPET-ELPP 176 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A + EL + LE L+ GYF P ++ L ++ +P +EV LRG++ST Sbjct: 177 VAPQFELDGMIGQLEEMLDGAGYFFPPDRTPATKRTLRTLLTKPGWSSQEVRTLRGVLST 236 Query: 246 LDK 248 L + Sbjct: 237 LAR 239 >gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] Length = 250 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 143/241 (59%), Gaps = 3/241 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A ++D ++ Sbjct: 11 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ D F++ATTAR+R+ K V +P+ A + I G+ V ++FG ER GL N Sbjct: 71 DDLAGAVGDAAFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLEN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPATKGEL 192 ++I+ +NAI+S PVNP F SLN++Q VLLM +E M + +V+ + + + A E+ Sbjct: 131 DDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMRAQGDVVAEQVEMAGTDW-ADNSEI 189 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + E L+ G+F P K M +L +++ R L R +V L G + + ++ + Sbjct: 190 EHLARHFEDRLDTAGFFYPEHKAASMKINLRNMWSRLPLTRADVQTLHGTLRQMVRWKER 249 Query: 253 S 253 Sbjct: 250 G 250 >gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus HTCC2654] gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2654] Length = 249 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 140/230 (60%), Gaps = 1/230 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAM NF L ++R+V PRDGWP+ KA + ++ A V+D+ V+ Sbjct: 11 PAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRVLDAAVVY 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+AD ++YATTAR+R K V P+ A G+ V ++FG ER GL N Sbjct: 71 DDLPAALADCDYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFGPERAGLEN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E+++ +NAII+ PVNP F SLN++Q+VLL +E +I ++ + + T AT+ E+ Sbjct: 131 EDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQTIDAAPEVMSLAKTDFATQVEVE 190 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + D+ E L+E G+F P K M L + + R L R +V + G++ Sbjct: 191 ALADHFERRLDEVGFFFPETKAAGMKLVLRNAWTRLSLTRADVQMFHGML 240 >gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 357 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 4/232 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVI+LV PQLGENIG ARAM NF LT++RLV+PRDGWP+ A ++A AD V+D +V+ Sbjct: 124 PVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAGADVVLDGAQVY 183 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+AD +YATT R R K V+ P+EAA ++ +G++ +FG ER GL Sbjct: 184 ETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHG--ATGRSA-FVFGPERSGLET 240 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +++AL+ I++ P+NP F SLN++QAV+L +E + + + ++ V + PA + EL Sbjct: 241 DDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQATL-AQPTVTDLGEPAPQDELEG 299 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 300 MIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 351 >gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] Length = 302 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 148/248 (59%), Gaps = 1/248 (0%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A Q + P +L+ PQ+GENIG ARAMWNF L ++R+ PRDGWP+ A + ++ Sbjct: 49 PKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAVAMAS 108 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++D V+ + +A+AD +++ATTAR R K V++P+ A + +++ +G+ V Sbjct: 109 GAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAGEKVA 168 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER G+ N++IA +NAIIS PVNP F SLN++Q VLL+ +E V+ Sbjct: 169 VMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQVAQIEHSRVEM 228 Query: 183 QNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 T A + E+ ++ E L++ G+F P +K M +L +++ R L + +V L G Sbjct: 229 IKTDWAEQIEIEKLTEHYEDRLDQAGFFYPEQKADGMKQNLRNLWSRMPLTKADVQTLHG 288 Query: 242 IVSTLDKF 249 ++ + ++ Sbjct: 289 VLRQMVRW 296 >gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] Length = 244 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 4/244 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV +LV PQ+GENIG ARAMWNF L ++R+ +PRDGWP++KA + ++ A ++D +F Sbjct: 4 PVFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEAGIF 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + A+ D ++ATTAR R K V+ P+ A + I G+ V ++FG ER GL N Sbjct: 64 DSTAGALQDRTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAGLEN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 +++ +N II+ PVNP FPSLN++Q VLL +E +++ ++ + T AT E+ Sbjct: 124 DDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRHTVETAPERTDMAGTQWATGIEVE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + E L+E G+F P K M +L +++ R L + +V L G+ L + R Sbjct: 184 KLSGHYEERLDEAGFFFPAHKADTMKLNLRNLWSRMPLTQADVQTLHGV---LRQMVRWK 240 Query: 254 SRRN 257 +RR+ Sbjct: 241 NRRD 244 >gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 231 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 149/234 (63%), Gaps = 8/234 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+GENIG ARAM NF L +LR++ PRDGWP+E+ARS++ A +ID+ +++ Sbjct: 3 PIIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++L+E I DL ++YATT R K + + L S VGI+FGRE GL+N Sbjct: 63 NSLEECIKDLEYLYATTCIKRAINKDYVFSQN----LTSDYPSLAKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEI+L+N II+ F SLNI+QAV+++ +E NS S +++ ATK E+ Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIVCYELFRNS--ESREDIYNIQKLATKEEIDH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLD 247 FL +L L++ G+F+ E+K M ++ +IF+R L E+ +L+GI+ +L+ Sbjct: 176 FLTHLFGKLDKAGFFKIPERKLIMQQNITNIFMRINNLSTPEIQILQGIIKSLN 229 >gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] Length = 231 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 142/227 (62%), Gaps = 1/227 (0%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +GENIG ARAMWNF L ++RLV+PRDGWP+ KA + ++ A ++D ++ ++ A+AD Sbjct: 1 MGENIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVAD 60 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F++ATTAR+R K V P+ A + E+I G+ V ++FG ER GL N+++A +NAI Sbjct: 61 TSFVFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAI 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 I+ PVNP F SLN++Q VLL+ +E M + S V+ + A++ E+ ++ E Sbjct: 121 INVPVNPQFASLNLAQCVLLVGYEWMRQQSDVAPVQEGLGDTQWASRDEIAKLAEHYEER 180 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +EE G+F P K M +L + + R L + ++ ++ G++ + ++ Sbjct: 181 MEEAGFFFPEHKAANMRRNLRNFWSRMPLTQADIRMMHGVMRQMVRW 227 >gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 139/240 (57%), Gaps = 14/240 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73 PV IL+ PQ+GENIG ARAM NF L+ LRLV+PRDGWP+ KA + +S A V+D V Sbjct: 7 PVFILIRPQMGENIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKVLDHAGV 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F EAIAD F++ATTAR R K + P+ A RI +GQ VG++FG ER GL Sbjct: 67 FPTTAEAIADCDFVFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPERTGLE 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG--- 190 N++I +NAII+ PVNP F SLN++QAVLL +E SE + P G Sbjct: 127 NDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQ---GSEAPAID---PGLAGAEM 180 Query: 191 ----ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ D+ E L++ G+F P K M +L +++ R L R +V L G++ L Sbjct: 181 ANALEIEKLGDHYEERLDQAGFFFPAGKAPMMKRNLRNMWSRFGLTRADVQTLHGMLRQL 240 >gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 8/233 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ +++ Sbjct: 3 PIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL+++I DL ++YATT R K + + ++ + VGI+FGRE GL+N Sbjct: 63 DNLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLSL----DYPNSAKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEI+L+N II+ F SLNI+QAV+++ +E N + +++ ATK E+ Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIICYELFRN--FTLREDIHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246 FL L L++ G+F+ +KK M ++ +IF R L EV +L+GI+ +L Sbjct: 176 FLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEVQILQGIIKSL 228 >gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa] gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa] Length = 230 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 8/235 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 3 PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSSEVQTLQGIIKSLNQ 230 >gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic] gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic] Length = 230 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 8/235 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 3 PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVPTLQGIIKSLNQ 230 >gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 230 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 8/235 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 3 PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L + Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVQTLQGIIKSLSQ 230 >gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM RHODOBACTER Sphaeroides Length = 249 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ GENIG ARA NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193 E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + G E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDXARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 D+ E LE G+F P EK +L + + R L R +V L G + + Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGXKLNLRNXWARLPLTRADVQTLHGXLRQI 237 >gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] Length = 232 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 1/230 (0%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +GEN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D R+ +L AI D Sbjct: 1 MGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIED 60 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F++ATTAR R K V +P+ A + E+I +G+ V ++FG ER GL NE+IA +NAI Sbjct: 61 CDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAI 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 IS PVNP F SLN+ Q VLL +E + V+ ++ A+ ++ + +++ E Sbjct: 121 ISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDWASHADVDALVNHYEDR 180 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L++ G+F P +K M ++F R L R +V +L GI+ + ++ + Sbjct: 181 LDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQMVRWKEK 230 >gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 233 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 145/235 (61%), Gaps = 8/235 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IIL+ PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 6 PIIILIAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 66 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEIA +N II+ F SLNI+QAV+++ +E NS + ++V ATK E+ Sbjct: 122 EEIAFANKIITINTTK-FSSLNIAQAVIIICYELFRNS--TPREDVHNIQKLATKEEIEH 178 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 179 FLVNLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSLNQ 233 >gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 231 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 8/233 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ +V+ Sbjct: 3 PVIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKVY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I DL ++YATT R K + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSAKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEI+L+N II+ F SLNI+QAV+++ +E NS + +++ ATK E+ Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIICYELFRNS--TPREDIYNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L Sbjct: 176 FLANLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228 >gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 253 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 3/237 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S + P IILV PQ+GENIG AR M NF L LR++NPRDGWP++KA + SA A Sbjct: 6 SNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGVE 65 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +VF L+ +ADL ++ ATTAR R K V +E L R G VG++FG E+ Sbjct: 66 AKVFDTLEAGLADLTYVLATTARPRGMEKPVFNAEEGIGALMSRPDVG--VGVMFGAEKA 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATK 189 GL NE++AL++ I+++PV+ F SLN++QAV + ++ ++K A + Sbjct: 124 GLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAHSWAARTLEGEAKKEFAGVGDSADR 183 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +L+ ++ E L+ G+F P EK+ M +L + FIR + +EV RG V L Sbjct: 184 EQLVRMFEHFEDELDRAGFFFPAEKRPVMTQNLRNAFIRAQWTNQEVQTFRGAVKAL 240 >gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1] Length = 155 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 74/139 (53%), Positives = 102/139 (73%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D+ V+ Sbjct: 4 PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAATVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + EAIADLH + ATTAR R K V AP+EA RI G+ VG++FGRER GL+N Sbjct: 64 ATVPEAIADLHHLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFP 153 +E++L++AI++FPV FP Sbjct: 124 DEVSLADAIVTFPVTEEFP 142 >gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 231 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 144/233 (61%), Gaps = 8/233 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV PQ+GENIG ARAM NF L++LR+V PRDGWP+E+ARS++ A +ID+ +++ Sbjct: 3 PVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL+E++ DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DNLEESVQDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+AL+N II+ F SLNI+QAV+++ +E N +++ ATK E+ Sbjct: 119 KEVALANKIITINTTE-FSSLNIAQAVIIICYELFRN--FKPREDIHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246 FL L L++ +F+ +KK M ++ +IF R L EV L+GI+ +L Sbjct: 176 FLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228 >gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 221 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 133/214 (62%), Gaps = 7/214 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 3 PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEIA +N II+ F SLNI+QAV+++ +E + NS + +++ ATK E+ Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDIHNIQKLATKEEIEH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 FL L L++ G+F+ +KK M + +IF R Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQSITNIFTR 209 >gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 249 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 136/238 (57%), Gaps = 4/238 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QNSA P IL PQLGENIG AR M NF L +L +V+PRDGWP++KA + SA + V+ Sbjct: 3 QNSAT-PAFILHTPQLGENIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGS-PVL 60 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + RV L +AI D +YATTAR R K V+ +EA + I +G+ V ++FG E Sbjct: 61 GNARVEYRLGDAIHDTTRLYATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGGE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 + GL NE + +++ II+ PV+ F SLN++QAV ++ +E +E + + A Sbjct: 121 KSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYEWTAGEGAPAE--FEPVSDVAK 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +L ++ E LE G+F P K M+ +L + FIR +EV RG V L Sbjct: 179 REDLERMFEHFETELERAGFFHPPSKTPLMVQNLRNAFIRGRWTEQEVRTFRGAVKAL 236 >gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 245 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 146/243 (60%), Gaps = 17/243 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILVD QL EN+G+VAR+M+NF T L+LV+P+ WPSEKA + + +A ++++++V+S+ Sbjct: 8 IILVDTQLPENVGLVARSMYNFGFTNLKLVSPKLEWPSEKALAVAVDAKNIVENIKVYSS 67 Query: 77 LKEAIADLHFIYATTARNRN-------NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L+EA++D + TAR R+ N K + KE I ++G++FG E Sbjct: 68 LREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKI--------NDSIGVVFGGEA 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188 GLTN+ ++L ++ + F SLN+S AV + + + + +E+ V + + P + Sbjct: 120 SGLTNDHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLF-SQVFKTEQLVDKNSEPHGS 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+ F D+LE LE RG+F+P EK KM +L +IF R +L E+ LRG+V L + Sbjct: 179 QNDLMYFFDHLEEELESRGFFQPEEKMPKMKQNLRNIFHRADLSEREIATLRGVVRVLSE 238 Query: 249 FSR 251 + + Sbjct: 239 YRK 241 >gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 137/236 (58%), Gaps = 4/236 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+LV PQLGENIG ARAM NF LT+LR+V PRDGWP+ A ++A AD V++ VF Sbjct: 1 MIVLVRPQLGENIGKAARAMLNFGLTRLRIVAPRDGWPNPSAGPAAAGADIVLEQAEVFD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD +YATT R R K V+ P+ AA + GQ I+FG ER GL + Sbjct: 61 TLADAVADCAHVYATTVRKRGVTKPVVTPEAAAREIIAA--PGQ-CAIVFGPERSGLETD 117 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++AL+ II+ P+NP F SLN++QAV+L +E +++ + + +E PA + E Sbjct: 118 DVALARTIITVPINPEFASLNLAQAVILCAYEWSKHADL-VQPTAEELLPPAPQEEFEGM 176 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L LE GYF P + L ++F + EV +RGI++TL + R Sbjct: 177 FAQLTTMLEPLGYFEPEIRAPVTRRTLRTMFTKAAWNHLEVRTMRGILTTLARKPR 232 >gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 278 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I+LV PQL ENIG ARAM N L LRLV PRDGWP E+A S+ A ++D+ Sbjct: 15 GESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQRILDAA 74 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130 V + +A+AD H ++AT R R+ V + AA L + + ++FG ER Sbjct: 75 TVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVLFGPERA 134 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPAT 188 GL N+++A ++ ++ +P+NP SLN++QAV+++ +E ++ + + + AT Sbjct: 135 GLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWNAAVDRTPPRQLMTNETHVAT 194 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 KGEL +FL+ L L+ G+ + K+ M+ +L F R E+ +E+ L G+V+ L + Sbjct: 195 KGELETFLNRLVSELDASGFLDNLPKRPGMVRNLRHWFQRGEVTEQELRTLHGVVTELSR 254 Query: 249 FSRQSSR 255 + R Sbjct: 255 GRMRRGR 261 >gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii] gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 102/153 (66%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +ILV+PQ GENIG ARAM NF L LR+V PRDGWP+ A ++S++A ++++ R++ Sbjct: 1 PAVILVEPQFGENIGAAARAMKNFGLHDLRVVRPRDGWPNPLAVATSSHAADLLEAARLY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ AIADL +YA TAR R K + K+ + G++FGRE GLTN Sbjct: 61 DSVEAAIADLDRVYAATARTRFMHKPFVTSKQGPADATDVAARMPRAGLMFGRESSGLTN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 EE+AL+N +++ NP++P LN++QA++ + +E Sbjct: 121 EEVALANKVLTIEANPVYPVLNLAQAIVCVSYE 153 >gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] Length = 256 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 8/239 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+IL PQ+ ENIG ARAM N L LR+V PRDGWP+ A +A +I++ +VF Sbjct: 12 PVVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVF 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A D+ F+ A TAR R+ P+ L ++ G+ V ++FG E GL N Sbjct: 72 DTLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQKAKKGR-VALLFGPEASGLDN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191 E+ L++ +S +NP +PSLN++QAVLL+ WE + I +++ ++ Sbjct: 131 NEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWRVAALSDIGDDDRSEPSDDSADDDDA 190 Query: 192 LLSFLDY----LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + DY LE +L++ G+F E + ++ ++ R R+E+ L GI+ L Sbjct: 191 PIKERDYFFQRLENALDDSGFFSSTEMAPAVKRNIRALINRATPSRQEIGTLHGIIQAL 249 >gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 168 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 104/158 (65%), Gaps = 5/158 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++F Sbjct: 3 PIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+N Sbjct: 63 DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EEIA + II+ F SLNI+QAV+++ +E + NS Sbjct: 119 EEIAFATKIITINTTE-FSSLNIAQAVIIICYELLRNS 155 >gi|218671238|ref|ZP_03520909.1| tRNA/rRNA methyltransferase protein [Rhizobium etli GR56] Length = 111 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 63/100 (63%), Positives = 84/100 (84%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI + Sbjct: 12 AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIAAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 +V+ L++AIADL+F+YATTAR+R+N+K V +P AA L Sbjct: 72 KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVLAAETL 111 >gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 223 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 4/214 (1%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M NF L ++RLV PRDGWP+ A ++A AD ++D +VF + EA+AD ++ATT R Sbjct: 1 MANFGLGEMRLVTPRDGWPNPSAGPAAAGADFILDKAQVFESTAEAVADCAHVFATTVRK 60 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R K V+ P++AA ++ G++ +FG ER GL E++AL+ I++ P++P F S Sbjct: 61 RGVTKPVVTPEQAADAIHAE--PGRSA-FLFGPERSGLETEDVALARTILTVPIDPEFGS 117 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 LN++QAV+L +E + ++ ++ PA + EL + +LE LE +GYF P + Sbjct: 118 LNLAQAVILCAYEWSKRKGLAQPPK-EDLLPPAPQDELEGLIAHLERMLEPKGYFLPESR 176 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + +P EV LRG++S+L++ Sbjct: 177 ADATRRTLRGVLTKPGWNHLEVRTLRGVLSSLER 210 >gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 249 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+ + R+ N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-AIALSCHATEVVKNARIVPN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ D+ ++ T+AR R V P K A +LN+ S + + I+FGRER G Sbjct: 69 LQEALDDIDYVVGTSARVRR----VSLPIEPISKVATNILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQ---NTPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + ++ +S K V E + A Sbjct: 125 LLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQTVEISDLKEVPEYTHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++LD Sbjct: 185 SVKELQGLYQHFEDSMLQSGFLDK-DKPGHVMDKMRRLFQRSELESQEVNILRGFLTSLD 243 >gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 237 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 135/241 (56%), Gaps = 10/241 (4%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S+ IL PQL ENIG AR M NFN +L +++P+ +P++K ++S A +I Sbjct: 2 SSTNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISK 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +VF NL+ A+ ++ ++ AT+AR RN N K + I ++I +FG E Sbjct: 62 SKVFDNLEPALKNIDYVIATSARFRNKNIKHIQLEDLKKIDFTKKI------AFLFGSEA 115 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPA 187 GL+N E++ +N + P NP F SLN+S + L+++ + + + I S N K+ A Sbjct: 116 SGLSNNEVSYANYTLQIPTNPDFKSLNLSHS-LIIIAQYVSSIIKSKTSNFKKSKKVKTA 174 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +K E+ + + +L+E +F+P EKK ML++L +IF + EL +E +L + ++L Sbjct: 175 SKKEIHAMTNLCIKNLDEINFFKPKEKKPIMLENLRNIFYKMELSAKETRILASVFASLG 234 Query: 248 K 248 K Sbjct: 235 K 235 >gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] Length = 262 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 139/243 (57%), Gaps = 7/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V NIG ARAM N L+ L LV+P D +PSE+A S +A A +++S RV ++ Sbjct: 25 IVMVRTWHPGNIGAAARAMKNMGLSDLVLVDPVD-YPSEQATSMAAGATDLLESARVVNS 83 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + AI D ++AT+AR+R++ + +EAA +N+ I G+ V I+FG ER GL NEE Sbjct: 84 IDVAIEDCQLVFATSARSRSHPWPIKEVREAAAHINDEIPQGK-VAIMFGPERMGLNNEE 142 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+ + P NP +P LN++QAV ++ +E S+ +++ + P EL F Sbjct: 143 LRLAQFHMDIPGNPDYPVLNVAQAVQVVCYELFMAQ--RSQPSIESKEYPQV-AELNKFY 199 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK-FSRQSSR 255 +LE +L G+ + ML +F R + E+ +LRG++S++DK RQS+ Sbjct: 200 SHLENTLTRAGFIIKAHPGQAML-RFKRLFNRARPEKIELNMLRGVLSSIDKLLERQSNE 258 Query: 256 RNN 258 N+ Sbjct: 259 SNH 261 >gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17] gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17] Length = 290 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 17/252 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L L +VNPR +P E + + +A A V+D+ V + Sbjct: 20 IVLVETSHSGNIGAVARAMKNMGLGNLWMVNPRS-FPDETSYARAAGASDVLDTATVVGS 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD + T+AR R V+ P +AA G V ++FGRE GL+NEE Sbjct: 79 LDEALADCVLVMGTSARGRKVPWPVMPPDQAATAAASHCGQG-TVALVFGRENHGLSNEE 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-------------- 182 + + I P NP + SLN++ AV +M +E + + E + + Sbjct: 138 LQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLKGLESDARRPYLERIAQPGDAGW 197 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PA+ G++ F +L+ LEE + R +K ++++ L +F R ++ + EV +LRG+ Sbjct: 198 DVAPASVGDVEGFFGHLQQVLEEIDFHR-RDKPRQLMARLRRLFQRAKMDQMEVNILRGV 256 Query: 243 VSTLDKFSRQSS 254 +S + K + S Sbjct: 257 LSAVQKTAGASG 268 >gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] Length = 258 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 6/255 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG VARAM N T L LV PR +P E+A +A+A V+D RV + Sbjct: 7 IVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPR-RFPDEEATWRAASAADVLDGARVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD HF+ T+AR R +L + AA+ + GQ V ++FGRE GLTN+E Sbjct: 66 VEEAIADCHFVVGTSARERRIPWPILDSRRAALQIRGEAARGQ-VAMLFGREDRGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTP-ATKGELL 193 + L + ++ P + + SLN++ AV ++ +E ++ S E+ +E + P ATK + Sbjct: 125 LKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQTLYDSLPERADEEWDAPFATKEAMQ 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F ++LE +L + + P ++++ L ++ R + E+ +LRG+++ K + Sbjct: 185 RFYEHLEQTLIDIEFLDP-SAPRQLMTRLQRLYNRMRIDEMELNILRGMLTETQKVVFER 243 Query: 254 SRRNNVLLQKTEKSE 268 S L QKT+ E Sbjct: 244 SALRAKLNQKTDDDE 258 >gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] Length = 247 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 9/237 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA+ + ++ T+AR R ++ P K A +LN+ S + + I+FGRER GL N Sbjct: 69 LEEALEGVDYVVGTSARVRR-VSLLIEPISKVATSILNKIQKSDEKIAILFGRERTGLLN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPATKG 190 EE+ +SN P N + SLN++QAV L+ +E + +I +S K V E N A+ Sbjct: 128 EELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKASVK 187 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 188 ELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] Length = 276 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N LT+L LV+P+D +PSE+A ++NA V+ S V Sbjct: 21 IVLVNTSHPGNIGGVARAMKNMGLTELYLVSPKD-YPSERAEWRASNALDVLQSATVVDT 79 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L +AIAD + T+AR R ++ P+E A +R + S V I+FGRE GLT Sbjct: 80 LDDAIADCGLVIGTSARARRIPWPLVTPRECA----DRSYHESSTHPVAIVFGREDRGLT 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATK 189 NEE+ N + P NP + SLN++ AV ++ +E C+ N PA Sbjct: 136 NEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVRMTCLNNQQGKPIHFDDWDMPPAKN 195 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L + ++L+ +LE+ G+ P E ++ + L ++ R L E+ +LRG+++ + F Sbjct: 196 NALEHYYEHLQSTLEKVGFLEP-ENPRQTMTRLRRLYSRVRLDEMELNILRGVLTAMQNF 254 Query: 250 SRQSSRRNNVLLQKTEKSE 268 ++ ++ N L +T + + Sbjct: 255 VYRTEKKLNDLEVRTNEDK 273 >gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] Length = 254 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P NIG ARAM L+ L LV P+ +P +A + + A V+ V + Sbjct: 12 VVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQ-FPDPEADTRATGAVDVLARATVTGS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LKEA+A F A +AR R+ + AP+E L +G +V ++FG E GLTNEE Sbjct: 71 LKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-----ATKGE 191 I A ++ P NP F SLN+ AV ++ +EC + + V+ TP AT E Sbjct: 131 ILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECRMAAFLEKPPVVEPGVTPFASPVATHDE 190 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 + +LE + + G++ P E+ ++ L +F R L ++E+ +LRGI+++ Sbjct: 191 IEGLYGHLETIMTDSGFYNP-EQPGRLFPKLRRLFGRVRLEKDEINILRGILAS 243 >gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] Length = 258 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV IL P G N+G RA+ N LRLV PR +P + +A I +++V Sbjct: 12 GPVFILDHPSHGGNVGAALRAITNMGFEHLRLVRPR-FFPHPDVEAWAAGTAARIPTIQV 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGL 132 F +L A ADL+ + A T R R V++P+E + L+ ++ + VGI+FG ER GL Sbjct: 71 FDSLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPKQQLASSRVGILFGTERTGL 130 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKG 190 ++ + I + P + SLN+SQAV+L+ +E M + + + + A++ Sbjct: 131 ETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELMLGQGLGEVPVHDPQRDDALASQD 190 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 E++ F D+L+ L + + +P ++ K+M+ L ++F R L R E+ +LRGI++ Sbjct: 191 EMVRFFDHLQDVLMQIDFIQP-DRYKQMMGTLKALFNRAALDRREITILRGILT 243 >gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] Length = 239 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 12/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM N L+ L LV+P D +PS++A S + A +++ V + Sbjct: 7 IVLIRTWHAGNIGATARAMKNMGLSNLVLVDPVD-FPSDEATSRAGQAVDLLEQANVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQN-VGIIFGRERWGLT 133 L+EAIAD + + T+AR+R S+ P A E+ S Q V I+FGRER GL+ Sbjct: 66 LEEAIADCNLVIGTSARDR----SIRLPALTAEACAEKACRESDQGTVAIVFGRERMGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-EL 192 NEEI + ++ NP +P LN+SQAV L+ WE + + SSE + P + EL Sbjct: 122 NEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFK--VASSETPPESDVEPYPRQREL 179 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F +L + E G+ P + M D L ++F R R+E+ +LRG +S++D+ + Sbjct: 180 EQFYQHLAKTSEATGFLNPAHPGQVM-DHLRALFRRARPTRKELSILRGFLSSIDQHT 236 >gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava] Length = 255 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 135/242 (55%), Gaps = 9/242 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L+ NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALTGCRLVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-------ATK 189 + + + P +P F SLN++ AV ++ +E + + +SE+ ++++ AT Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMSWLAASEQPAHDESSKMAHNAELATM 185 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ F +LE +L G+ P EK + ++ L +F R E+ E+ +LRGI++ K Sbjct: 186 DEMEGFYGHLEATLVAIGFLDP-EKPRHLMARLRRLFGRSEVEHSELSILRGILTETQKA 244 Query: 250 SR 251 +R Sbjct: 245 AR 246 >gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii] Length = 257 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P D +PS +A + ++ A ++D+ +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPED-FPSSEAVARASGATDILDNAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ T+AR+R +L P+E A E++ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NTPA 187 + + P +P F SLN++ AV ++V+E + + K++ + PA Sbjct: 126 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLNSQPA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 186 TMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGILTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48] gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas entomophila L48] Length = 251 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 10/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P+ +PS +A + ++ AD ++D+V+V Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPSAEASARASGADDLLDNVQVVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR R+ ++ P+E G+ + ++FGRE GLTNEE Sbjct: 66 LEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKNVKEQNTPATKG 190 + + + P NP F SLN++ AV + M W + + EK + + AT Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAGQGAATKVEK--VDASELATMD 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F D+LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ K + Sbjct: 184 EMELFYDHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQKVA 242 Query: 251 R 251 R Sbjct: 243 R 243 >gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] Length = 258 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P D +PS +A + ++ A ++D+ +V + Sbjct: 8 VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPED-FPSSEAVARASGATDILDNAQVVAT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ T+AR+R +L P+E A E++ G V ++FGRE GLTNEE Sbjct: 67 LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNT-----PA 187 + + P +P F SLN++ AV ++V+E + V S++ E PA Sbjct: 127 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLNSQPA 186 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 187 TMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGILTETQ 245 Query: 248 KFSR 251 K +R Sbjct: 246 KAAR 249 >gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] Length = 247 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P K A +LN+ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S+ K V E N A Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida W619] Length = 251 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 10/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N LT+L LV P++ +P+ A + ++ AD V+ +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKE-FPAADASARASGADDVLAGAQVVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR R+ ++ P+E E G+ + ++FGRE GLTNEE Sbjct: 66 LEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKNVKEQNTPATKG 190 + + + P NP F SLN++ AV + M W E + EK + + AT Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAEGTAQKVEK--ADASELATMD 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F ++LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ K + Sbjct: 184 EMELFYEHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQKVA 242 Query: 251 R 251 R Sbjct: 243 R 243 >gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] Length = 237 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I + +V L Sbjct: 9 ILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIINAKVHETL 68 Query: 78 KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ + ++ AT+AR RN N K + I N++I +FG E GL+N E Sbjct: 69 ESAVKKVDYVVATSARFRNKNIKHINLDDLKKIDFNKKI------AFLFGSEASGLSNNE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLSF 195 I+ +N + P NP F SLN+S +V+++ + K K + A+K ++ + Sbjct: 123 ISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASKKDIQAM 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K Sbjct: 183 TNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSK 235 >gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 237 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 134/236 (56%), Gaps = 14/236 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I + +V L Sbjct: 9 ILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAKNLIINAKVHETL 68 Query: 78 KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ + + AT+AR RN N K + I N++I +FG E GL+N E Sbjct: 69 ESAVKKVDCVIATSARFRNKNIKHINLDDLKKIDFNKKI------AFLFGSEASGLSNNE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKGEL 192 I+ +N + P NP F SLN+S +V+++ SI++ K VK ++ T A+K ++ Sbjct: 123 ISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVA--SIINL-KGVKYSKSKKVTLASKKDI 179 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K Sbjct: 180 QAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSK 235 >gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp. tularensis FSC033] gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis NE061598] Length = 247 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P K A +LN+ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S K V E N A Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501] gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501] gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 278 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV+P D +PS A + ++ A ++DS +V + Sbjct: 28 VVLVNTSHAGNIGGAARAMKNMGLSRLVLVDPED-FPSPDAVARASGATDILDSAQVVAT 86 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E A V E+ +G +V ++FGRE GLTNEE Sbjct: 87 LEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVALVFGREYAGLTNEE 146 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEK---NVKEQNTPA 187 + + P +P F SLN++ AV + M W E EK P Sbjct: 147 LQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVRMAWLAAEGRPTKVEKLETTAMLDAQPV 206 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL ++ +LE +L + G+ P K + ++ L ++ R + + E+ +LRGI++ Sbjct: 207 TVDELENYFGHLEQTLVDIGFLDPA-KPRHLMPRLRRLYGRSGISKLEMNILRGILTETQ 265 Query: 248 KFSR 251 K +R Sbjct: 266 KAAR 269 >gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella tularensis subsp. tularensis WY96-3418] gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P E A +LN+ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S K V E N A Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 8/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ A + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 + + + P +P F SLN++ AV ++ +E + SE+ + A EL + Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAVSERGEAPKTASAHSAELATMD 185 Query: 195 ----FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++ K + Sbjct: 186 EMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVA 244 Query: 251 R 251 R Sbjct: 245 R 245 >gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P K A +LN+ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + ++ +S+ K V E N A Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct] Length = 282 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 18/245 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 36 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 94 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P E A +LN+ S + + I+FGRER G Sbjct: 95 LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 150 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKG 190 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S K V E N K Sbjct: 151 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 210 Query: 191 ---ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL- 246 EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L Sbjct: 211 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 269 Query: 247 --DKF 249 DK+ Sbjct: 270 NQDKY 274 >gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida KT2440] Length = 251 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GLTNEE Sbjct: 66 LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 + + + P NP F SLN++ AV ++ +E + + E K + AT E+ Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELATMDEM 185 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K R Sbjct: 186 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243 >gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771] Length = 450 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%) Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AA L + +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM + Sbjct: 20 AAETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSY 79 Query: 167 ECMENSIVSSEK---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223 E M++ + E EQ P+TK +L D LE +L+ R YF P KK KM+D+L Sbjct: 80 EWMKSGMEDLEAVPFQALEQR-PSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLR 138 Query: 224 SIFIRPELMREEVFLLRG 241 ++ R +E+ +LRG Sbjct: 139 AVLSRRAFTEQEISVLRG 156 >gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 247 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDYE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P K A +LN+ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S K V E N A Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1] gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1] Length = 279 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ +V + Sbjct: 35 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 93 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GLTNEE Sbjct: 94 LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAGLTNEE 153 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 + + + P NP F SLN++ AV ++ +E + + E K + AT E+ Sbjct: 154 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELATMDEM 213 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K R Sbjct: 214 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 271 >gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1] Length = 283 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ +V + Sbjct: 39 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 97 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GLTNEE Sbjct: 98 LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 157 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 + + + P NP F SLN++ AV ++ +E + + E K + AT E+ Sbjct: 158 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPRKVEKVDAAELATMDEM 217 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K R Sbjct: 218 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 275 >gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida GB-1] Length = 251 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNALVVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE GLTNEE Sbjct: 66 LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192 + + + P NP F SLN++ AV ++ +E + + E K + AT+ E+ Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPEKVEKVDATELATMDEM 185 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ K R Sbjct: 186 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243 >gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 243 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato str. DC3000] gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 257 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ E TP Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYE-VRMAWLAASVQADEGETPKVASAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L G+ P EK + ++ L +F R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYGHLETTLVNIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 242 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b] Length = 257 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 6/246 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ V + Sbjct: 8 IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAAVVTNT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ I T+AR R L P A ++N++ + Q V I+FGRE GLTNEE Sbjct: 67 LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I+ P NP + SLN++QAV ++ +E + S + PAT E+ F Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK---FSRQS 253 ++L+ E + +P ++++ + +F R L + EV +LRG++S + K ++R+ Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLEWARKD 244 Query: 254 SRRNNV 259 +R N + Sbjct: 245 NRSNKI 250 >gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] Length = 245 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 3/227 (1%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L +L LV P + +P E A + ++ A ++D+ RV L+EA+AD F Sbjct: 22 NIGAAARAMKTMGLRELWLVAP-ESFPDEVATARASGAADLLDAARVVGTLEEALADTVF 80 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A TAR R L ++AA+ L R G V ++FG E GLTNEE AL + ++ Sbjct: 81 SAALTARRRELSLPRLQARDAALELVRRTQDGA-VALVFGNETSGLTNEEAALCSLPVTI 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206 P + F SLN+ AV ++ +E ++ + Q PAT + F+ +LE ++ Sbjct: 140 PTDAGFSSLNLGAAVQVLAYELRMAALGDAAAPADPQPEPATHADFEGFMAHLERAVTAS 199 Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 G+ P K++L + +F R L REEV LLRG+++T + R+ Sbjct: 200 GFHDPA-NPKRLLPRMRRLFNRVRLEREEVALLRGMLTTFETPRRRG 245 >gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] Length = 243 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 142/245 (57%), Gaps = 14/245 (5%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 NS IIL++ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D Sbjct: 2 NSLDQIQIILIETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEQGK-VAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQ 183 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + +KN V+E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLELQKNPQIRPLVEEK 178 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + P T+ L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++ Sbjct: 179 DYPNTEA-LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGML 233 Query: 244 STLDK 248 ++++K Sbjct: 234 TSVEK 238 >gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 257 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 134/242 (55%), Gaps = 14/242 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 ILV N+G ARA+ ++L LV PR D E+A + ++ A ++++ + Sbjct: 17 ILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILENALIVE 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLT 133 L+EA+ D HF A +AR R + P++ A + IF+G+ N ++FG ER+GL+ Sbjct: 77 TLEEALEDCHFAAALSARLREFSPPIFTPRQFA----DNIFTGEHANCALVFGSERYGLS 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPAT 188 NE++ +A+I+ P NP + SLN++QA+ ++ +EC + ++ + ++++ PA+ Sbjct: 133 NEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDEHIGFHGEPAS 192 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ +LE +L G+ P + KK++ L +F R L EEV +LRGI ++K Sbjct: 193 VDQINRMFIHLETALTTIGFLNP-DNPKKLMPRLRRLFSRSSLETEEVNILRGIARQIEK 251 Query: 249 FS 250 S Sbjct: 252 QS 253 >gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] Length = 257 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 6/246 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ V + Sbjct: 8 IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAAVVTNT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ I T+AR R L P A ++N++ + Q V I+FGRE GLTNEE Sbjct: 67 LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I+ P NP + SLN++QAV ++ +E + S + PAT E+ F Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK---FSRQS 253 ++L+ E + +P ++++ + +F R L + EV +LRG++S + K ++R+ Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLEWARKD 244 Query: 254 SRRNNV 259 +R N + Sbjct: 245 NRSNRI 250 >gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112] gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112] gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] Length = 247 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P E A +L++ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVR----RVSLPIEPISKIATNILSKIQESDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + +I +S+ K V E N A Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] Length = 239 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 5/238 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V ENIG VARAM N L L LV PRD WPS+ AR+ +A A V+D++ + + Sbjct: 3 VVMVRTFQSENIGAVARAMKNMGLNDLVLVAPRD-WPSDVARNRAAGAVDVLDNIALADS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD H++ AT+AR R + +++ R GQ V I+ G ER GL ++ Sbjct: 62 VEEAIADCHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSDS 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA-TKGELL- 193 + L + NP +P LN++QA ++ +E + S E + N P K E + Sbjct: 122 LRLCDQHCYISANPDYPVLNVAQAAQVLTYELYQASEAGGELPETPDSNRPRYPKHEAVE 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE +L G+ RP E L L + + ++ E+ +LRGI+S +++ R Sbjct: 182 HFYQHLESALTHIGFLRP-EHPGDTLVKLRRLLTKAQIEDSELNMLRGILSAIERLER 238 >gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] Length = 257 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 132/242 (54%), Gaps = 4/242 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+ L LVNP+ +P KAR +A AD V+D+ V + Sbjct: 8 IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAREMAAGADDVLDAAVVTNT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ I T+AR R L P A ++N++ + Q V I+FGRE GLTNEE Sbjct: 67 LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I+ P NP + SLN++QAV ++ +E + S + PAT E+ F Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++L+ E + +P ++++ + +F R L + EV +LRG++S + K S + +R+ Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQK-SLEWARK 243 Query: 257 NN 258 +N Sbjct: 244 DN 245 >gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1] Length = 247 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P K A +L++ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATNILSKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + ++ +S K V E N A Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKEVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E++++ +A A V+D+ ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQSQALAAGAKDVLDNAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 257 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 4/242 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ V + Sbjct: 8 IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKS-FPDLKAKEMAAGADDVLDAAVVTNT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ I T+AR R L P A ++N++ + Q V I+FGRE GLTNEE Sbjct: 67 LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSGNTQ-VAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I+ P NP + SLN++QAV ++ +E + S + PAT E+ F Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++L+ E + +P ++++ + +F R L + EV +LRG++S + K S + +R+ Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQK-SLEWARK 243 Query: 257 NN 258 +N Sbjct: 244 DN 245 >gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523] Length = 249 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+ + ++ +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-AIALSCHATEVVKNAKIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131 L EA+ + ++ T+AR R V P K A +L++ S + V I+FGRER G Sbjct: 69 LVEALEGVDYVVGTSARVR----RVSLPIEPISKVATNILSKIQKSDEKVAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L NEE+ +SN P N + SLN++QAV L+ +E + ++ +S K V E N A Sbjct: 125 LLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKIRRLFQRSELESQEVNILRGFLTSLN 243 >gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 243 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 140/238 (58%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ G+ + ML L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLGF---IHNDAVML-KLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] Length = 242 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V+++++ Sbjct: 8 IILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNVQIYAD 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + AIAD + T+AR R+ S++ P++ + +R G+ V I+FGRER GLTNEE Sbjct: 67 IDSAIADCQLVIGTSARLRHLQNSLVEPRQCGKLAIQRAEQGK-VAIVFGRERVGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELLSF 195 + + ++FP NP + SLN++ AV L +E + EK +++ T L F Sbjct: 126 LLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEALEHF 185 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + E +E G+ R + ++ L ++ R EL E+ LLRG+++ ++K+S Sbjct: 186 FAHTERLYKELGFIR----NEAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236 >gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTP-ATKG 190 + + + P +P F SLN++ AV ++ +E + ++E+ N AT Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEAFRPASAHNAELATMD 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F +LE +L G+F P EK + ++ L ++ R E+ R E+ +LRG+++ K + Sbjct: 186 EMEGFYIHLEATLVAIGFFDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQKAA 244 Query: 251 R 251 R Sbjct: 245 R 245 >gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 257 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTP-----A 187 + + + P +P F SLN++ AV ++ +E + S+ + + + + A Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGEAPKATSAHNAELA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++ Sbjct: 186 TMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188 + + + P +P F SLN++ AV ++ +E + ++E+ E + P AT Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQG--EASRPASAHNAELAT 183 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ K Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242 Query: 249 FSR 251 +R Sbjct: 243 AAR 245 >gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 255 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188 + + + P +P F SLN++ AV ++ +E + ++E+ E + P AT Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQQ-GEASKPASAHNAELAT 184 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ K Sbjct: 185 MDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 243 Query: 249 FSR 251 +R Sbjct: 244 AAR 246 >gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188 + + + P +P F SLN++ AV ++ +E + ++E+ E + P AT Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQG--EASRPASAHNAELAT 183 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ K Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242 Query: 249 FSR 251 +R Sbjct: 243 AAR 245 >gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 245 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+ NIG ARAM N NL++L LVNP+ G+PS A + ++ AD ++ + V Sbjct: 13 VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSAVATARASGADDLLANAVVCET 71 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+ H + +AR RN +K + + + GQ V ++FG E++GLTNE Sbjct: 72 LEEALQGSHLVIGASARQRNIKWKQMDVVGACSEIQQATTTEGQEVSVVFGTEKYGLTNE 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELLS 194 E+ L +++ P NP + SLN++ A+ + ++ + N+ EK+ N A+ EL Sbjct: 132 ELDLCQILMTIPGNPNYFSLNVASAIQVFAYQNYISNTTTEFEKS---SNELASFDELEG 188 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +L LE YF K+ ++ L F R E +EEV + RGI+ + F + Sbjct: 189 FYTHLTQVLEHIEYFEDKRPKELLMRRLRRFFGRSEPEKEEVAIFRGILRNIRPFKK 245 >gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 244 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 132/232 (56%), Gaps = 3/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P NIG ARAM L++L LV P+ +PSE+A + ++ A ++++ V + Sbjct: 6 VVLARPNHPGNIGSAARAMKTMGLSRLYLVEPKV-FPSEEANALASGAVDLLENATVVGS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA++D+ A T+R R + P++ L R G+ V ++FG E +GL+ EE Sbjct: 65 LREALSDVTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFGLSIEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + N +++ P NP + SLN++ AV +M +E ++ V E ++ + AT+ E+ Sbjct: 125 VEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSHTGVDVEY-LRAEGEAATQSEVDGMC 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +++E GYF+ ++++ + ++F R ++REE+ +LRG + + Sbjct: 184 GHLEQAMDEIGYFQR-RNSERLMRRMRTMFHRAGMLREEIDILRGFYKQVQR 234 >gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 257 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVCTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ + TP Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYE-VRMAWLAASVQAGQGETPKAASAHSAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] Length = 257 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ E TP Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYE-VRMAWLAASVQADEGETPKVASAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] Length = 241 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 8/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++ NIG ARAM N L++L LV P + +PSE+A S +A A ++DS V S Sbjct: 7 VVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEE-FPSEEADSRAAGAKDLLDSAIVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EAI+D + T+AR + F L A K A V+ E SG+ V ++FGRE GL N Sbjct: 66 LEEAISDCQLVIGTSARTKRTFDLPLLNARKGAERVVAE-AQSGE-VALVFGRETMGLHN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+ N + P NP +P LN+SQA+ L+ +E ++ + V+E+ P K E+ Sbjct: 124 HELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEIFMSAENKTYSEVEEE-YPRHK-EMAL 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +++E L + P + + K+L+ L+ F R R E+ +LRGI++++++ Sbjct: 182 FYEHMEKVLRLTNFIIP-QHEGKVLEKLHRFFNRSRPERTELNMLRGILTSVEE 234 >gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 257 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 136/245 (55%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILESAKVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ + ++ TP Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 139/238 (58%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 254 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 8/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 + + + P +P F SLN++ AV ++ +E + ++E+ + A EL + Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGDASRPASAHNAELATMD 185 Query: 195 ----FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ K + Sbjct: 186 EMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQKAA 244 Query: 251 R 251 R Sbjct: 245 R 245 >gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7] Length = 254 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188 + + + P +P F SLN++ AV ++ +E + ++E+ E + P AT Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQG--EASRPASAHSAELAT 183 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ K Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242 Query: 249 FSR 251 +R Sbjct: 243 AAR 245 >gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 8/234 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ NIG ARA+ N ++L LVNPR D E+A + ++ A ++ S R+ Sbjct: 10 VLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILASARIVG 69 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++EA+AD ++ A TAR R V+ P+E A L + +G +IFG ER+GL NE Sbjct: 70 SIEEALADCNYAAAVTARLREFSPPVITPRELATRLADE--AGLQAAVIFGNERFGLPNE 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKGEL 192 + N +I+ P NP + SLN++QAV ++ +E +IV S+ N+ Q A ++ Sbjct: 128 IVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAAGMAQI 187 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +LE +L + + KK++ L +F R +L EEV +LRGI + Sbjct: 188 EGMYAHLEQALVAIDFLD-ADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 240 >gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 274 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 16/253 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM N L L LV PR ++ + ++ AD ++ + RV + Sbjct: 22 IVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESHARASGADALVSNARVHAT 81 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQN--VGIIFGRERWG 131 L+EA++D F+ +AR R+ +L P+ L ER+ + +N ++FGRE G Sbjct: 82 LEEAVSDCTFVVGASARVRHLPWPMLTPR----ALGERLPRECAPENARAALVFGREDSG 137 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNT 185 +TN E+ +A + P NP F SLN++ AV ++ +EC + S ++ V+ N Sbjct: 138 MTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLAFLGSDAEDTETPFGVEWDNP 197 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT +L F ++LE +L + + P + ++++ L +F+R + E+ +LRGI+ Sbjct: 198 PATHDDLERFFEHLERTLIDIDFHDP-DNPRQLMARLRRLFLRTHIDSMEMNILRGILGA 256 Query: 246 LDKFSRQSSRRNN 258 ++K SR + R + Sbjct: 257 VNKQSRALAARKD 269 >gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549] Length = 247 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V+++ + +N Sbjct: 10 IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ + ++ T+AR R V P E A +L++ S + + I+FGRER G Sbjct: 69 LEEALEGVDYVVGTSARVR----RVSLPIEPISKIATNILSKIQKSDEKIAILFGRERTG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187 L N E+ +SN P N + SLN++QAV L+ +E + ++ +S+ K V E N A Sbjct: 125 LLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNHLHKKA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL + E S+ + G+ +K ++D + +F R EL +EV +LRG +++L+ Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243 >gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 242 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 132/235 (56%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V+++++ Sbjct: 8 IILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNVQIYAD 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + AIAD + T+AR R S++ P++ + +R G+ V I+FGRER GLTNEE Sbjct: 67 IDSAIADCQLVIGTSARLRYLQNSLVEPRQCGKLAIQRAEQGK-VAIVFGRERVGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELLSF 195 + + ++FP NP + SLN++ AV L +E + EK +++ T L F Sbjct: 126 LLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEALEHF 185 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + E +E G+ R + ++ L ++ R EL E+ LLRG+++ ++K+S Sbjct: 186 FAHTERLYKELGFIR----NEAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236 >gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] Length = 252 Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 16/244 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L VNP++ P + + SA A VI + + ++ Sbjct: 17 IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVNS 75 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 + EAI + T+AR+R +LAP+E ER + V IIFGRER GLT Sbjct: 76 IDEAIEGCGLVIGTSARSRTLSWPMLAPRECG----ERCVMEAKHKPVAIIFGRERTGLT 131 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT----- 188 NEE+ + + P NP + SLN++ AV L+ +E ++ EK +E+N+P+ Sbjct: 132 NEELQKCDFHLYVPTNPEYGSLNLAMAVQLVSYEIRMAALAQEEK--QEENSPSEIDYPP 189 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE L E G+ RP + +++ L +F R +E+ +LRGI+++++K Sbjct: 190 ADDIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSVEK 248 Query: 249 FSRQ 252 ++++ Sbjct: 249 WAKK 252 >gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] Length = 241 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV NIG ARAM L+ LRLV P+ +PS +A + ++ AD ++ + +F N Sbjct: 7 IILVGITHPGNIGAAARAMKTMGLSHLRLVQPKH-FPSAEATARASGADDLLSNALLFDN 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++++ D H ++ T+ R R VL P A + + + V ++FGRE+ GLTN+E Sbjct: 66 FEDSLKDCHLVFGTSTRQRMIAWPVLTPIACA---EKALECPKPVALVFGREQSGLTNKE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQN--TPATKGE 191 + L N ++ P N F SLN++ AV ++ +E + + I+ ++ N + + PA+ Sbjct: 123 LDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRKTNEAFIIKNDTNALKNSLPAPASLQA 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F +LE +L + + P +K K ++ L+ +F R +L+ EV +LRG+++ K Sbjct: 183 MAQFYQHLEQTLIDIEFLDP-QKPKLLMRHLHRLFNRVQLLDSEVQILRGLLTAAQK 238 >gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 257 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILESAKVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSE-----KNVKEQNTP-A 187 + + + P +P F SLN++ AV ++ +E ++ SE K V N A Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAALAHSEQGETPKAVSAHNAELA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 186 TMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803] gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803] Length = 240 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 12/241 (4%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 ++PQ N+G +ARAM N L +L LVNPR + S +A++ + +A V+ +V +L Sbjct: 1 MEPQGERNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLAT 60 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+ D I AT+AR R + P++A L + ++FGRE GLTNEE+ Sbjct: 61 ALGDRQRIIATSARERILQSPMETPRQALPWL---LAPNLKSALVFGREDSGLTNEELNQ 117 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTP--ATKGE 191 ++ + PV+P +PSLN+SQAV++ +E + S+ N +++ +T AT + Sbjct: 118 AHRFVRIPVHPQYPSLNLSQAVMVCTYELYQASLAMETNNQVPGDRLEDGSTMPLATNAQ 177 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L S+ +LE +L P + KM I+ R L EEV LLRGI+ +D ++ Sbjct: 178 LDSYCQHLEKTLLNIEVLYPHTARSKMA-KFRRIYQRAALNSEEVALLRGILGQIDWLAQ 236 Query: 252 Q 252 Q Sbjct: 237 Q 237 >gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 257 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ + ++ TP Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGGTPKAVSAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 281 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P + E A SA A+ V+++ V + L Sbjct: 39 VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 97 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNEE+ Sbjct: 98 ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 157 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193 L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ +L Sbjct: 158 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 217 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+E + + + M L +F + EL ++E+ LLRG++S + + Sbjct: 218 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 271 >gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] Length = 246 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N + L LV P+ +PS A S ++ AD V+ V + Sbjct: 7 IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPKI-FPSADATSRASGADDVLAGATVCAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134 L+EAIAD + +AR R + P+E A +++NE G V I+FGRE GL N Sbjct: 66 LQEAIADCQVVIGASARGRTISWPEMTPRECAEKVLINE---PGNKVAIVFGRENSGLKN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPATKG 190 E+ L + ++ P N + SLNI+ A ++ +E S ++ ++ + K ++ AT Sbjct: 123 HELDLCHFLLRIPCNSEYSSLNIAAAAQVVCYELFVASGLAEQEQIVVGDKGEDPLATAT 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ SF +L +L + G+ P K K ++ L I+ R ++ +E+ +LRGI+ + S Sbjct: 183 QMESFYTHLAEALTDIGFMHPA-KSKSIMRRLRRIYNRVQMDTKELDILRGIL----RMS 237 Query: 251 RQSSRRNNV 259 + R N+V Sbjct: 238 QGHKRNNDV 246 >gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] Length = 263 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P + E A SA A+ V+++ V + L Sbjct: 21 VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNEE+ Sbjct: 80 ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 139 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193 L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ +L Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+E + + + M L +F + EL ++E+ LLRG++S + + Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253 >gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23] gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa M23] gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 263 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P + E A SA A+ V+++ V + L Sbjct: 21 VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNEE+ Sbjct: 80 ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEEL 139 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193 L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ +L Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+E + + + M L +F + EL ++E+ LLRG++S + + Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253 >gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] Length = 252 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P + E A SA A+ V+++ V + L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNEE+ Sbjct: 69 ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193 L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ +L Sbjct: 129 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 188 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+E + + + M L +F + EL ++E+ LLRG++S + + Sbjct: 189 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 242 >gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] Length = 250 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 12/246 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L++L LV PR +P E+A +A+A V+D+ V + Sbjct: 8 IVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQ-FPDEQADWRAASAADVLDTAVVTES 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+EAIAD F+ T+AR R +L P++ A ER+ N V ++FGRE GLT Sbjct: 67 LEEAIADCQFVVGTSARGRRIPWPLLDPRQCA----ERMALASNDEQVAVLFGREDRGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGE 191 N+E+ L N ++ P + + SLN++ AV ++ +E + NS + + +E +TP T GE Sbjct: 123 NDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELRMLLNSPLLPKTEDEEWDTPFTTGE 182 Query: 192 -LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + F +LE +L + + P ++ M+ L ++ R L E+ +LRGI++ K+ Sbjct: 183 NMERFYSHLEETLTDIEFLDPAAPRQLMV-RLRRLYSRVRLDEMELNILRGILTETQKWV 241 Query: 251 RQSSRR 256 +S + Sbjct: 242 SKSKNK 247 >gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 262 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 11/251 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV P D +PS A + ++ A V+D+ +V Sbjct: 10 VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPED-FPSGDAVARASGATDVLDAAQVVGT 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E + E+ +G V ++FGRE GLTNEE Sbjct: 69 LEEALVGCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAAGGEVALVFGREYAGLTNEE 128 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKEQNTPA 187 + + P NP F SLN++ AV ++ +E + +S E + A Sbjct: 129 LQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLETTAMLSSQAA 188 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL SF +L L G+ P +K + ++ L ++ R + + E+ +LRGI++ + Sbjct: 189 TADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNILRGILTETE 247 Query: 248 KFSRQSSRRNN 258 K R + Sbjct: 248 KAVRGEPHKQG 258 >gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] Length = 238 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ + ++ Sbjct: 9 IILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL-DEQAEALAAGAKDVLDNAQCYAT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EAIAD + T+AR R+ +++ P++ ++ R G+ V I+FGRER GLTNEE Sbjct: 68 FDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRTNLGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKN--VKEQNTPATKGELL 193 + ++FP NP + SLN++ AV L +E M S EK +++ P + L Sbjct: 127 LLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQA-LE 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K Sbjct: 186 HFFAHTERLYTELGFIR----NDSVMLKLRRLYQRAELETNELNLLRGMLTAVEK 236 >gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 257 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ + ++ TP Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ + ++ Sbjct: 9 IILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL-DEQAEALAAGAKDVLDNAQCYAT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EAIAD + T+AR R+ +++ P++ ++ R G+ V I+FGRER GLTNEE Sbjct: 68 FDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRANLGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKN--VKEQNTPATKGELL 193 + ++FP NP + SLN++ AV L +E M S EK +++ P + L Sbjct: 127 LLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQA-LE 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K Sbjct: 186 HFFAHTERLYTELGFIR----NDSVMLKLRRLYQRAELETNELNLLRGMLTAVEK 236 >gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 263 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P + E A SA A+ V+++ V + L Sbjct: 21 VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNEE+ Sbjct: 80 ADAVADCTFVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 139 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193 L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ +L Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L+E + + + M L +F + EL ++E+ LLRG++S + + Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253 >gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 135/231 (58%), Gaps = 14/231 (6%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + ++AIAD Sbjct: 16 LPANIGSAARAMKTMRLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDSFEQAIAD 74 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + T+AR R+ S++ P+E + ER G+ V I+FGRER GLTNEE+ + Sbjct: 75 CQLVIGTSARLRHLQNSLIEPRECGKLAVERAEQGK-VAIVFGRERVGLTNEELLKCHYH 133 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGELLSFLD 197 ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ L F + Sbjct: 134 LNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA-LEHFFN 191 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 192 HTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR] gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR] Length = 240 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 5/233 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM L++L LV+P P A + +A A ++ S + Sbjct: 7 IVLVNTSHTGNIGSVARAMKTMGLSKLTLVDPVQ-EPDSHASALAAGATDILASATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EAIAD + AT+ARNR +L P+E AA VL E S V ++FGRE GLTNE Sbjct: 66 LQEAIADCGLVIATSARNRTLDWPLLGPRECAAKVLEET--SQHQVALVFGRENSGLTNE 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ S + P NP + SLN++ AV + +E + S ++ + +L F Sbjct: 124 ELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQWLESKQRAPENLPEYPRAEDLERF 183 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++LE +L + G+ P + +++ L +F R E+ +LRGI++++DK Sbjct: 184 YEHLEKTLGQTGFIVP-QHPGQVMTKLRRLFNRARPEENEINILRGILASVDK 235 >gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 14/239 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV P++ E+A + +A A ++D+ ++F+ Sbjct: 9 IILVETSLSANIGSAARAMKTMGLSNLRLVRPKNPL-DEQATALAAGAKNILDNAQIFNT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135 AIAD I T+AR R+ +++ P+E +++N + + +IFGRER GLTNE Sbjct: 68 FDAAIADCQLIIGTSARLRHLQSTLVEPRECGKLIINNT--NQHKIALIFGRERIGLTNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKG 190 E+ + ++ P NP + SLN++ AV L +E + +K + +E+N P T Sbjct: 126 ELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIRMAWLELQKKPIIQPLTEEKNYP-TAA 184 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + F D+ E +E G+ R ++ L ++ R +L E+ LLRG+++ ++K Sbjct: 185 AMAHFFDHTERLYKELGFIR----NDAVMLKLRRLYQRAKLEENELNLLRGMLTAVEKH 239 >gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 20/246 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L VNP++ P + + SA A VI + + Sbjct: 7 IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 + +AI + T+ARNR +LAP+E ER + + V +IFGRER GLT Sbjct: 66 IDDAIEGCGLVIGTSARNRTLSWPMLAPRECG----ERCVKEAANKPVAVIFGRERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------P 186 NEE+ + + P NP + SLN++ AV L+ +E ++ EK +E+N P Sbjct: 122 NEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEK--QEENASSEIDYPP 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A ++ F +LE L E G+ RP + +++ L +F R +E+ +LRGI++++ Sbjct: 180 AE--DIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSV 236 Query: 247 DKFSRQ 252 +K++++ Sbjct: 237 EKWAKK 242 >gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 242 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 20/246 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L VNP++ P + + SA A VI + + Sbjct: 7 IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 + +AI + T+ARNR +LAP+E ER + + V +IFGRER GLT Sbjct: 66 IDDAIEGCGLVIGTSARNRTLSWPMLAPRECG----ERCVKEAANKPVAVIFGRERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------P 186 NEE+ + + P NP + SLN++ AV L+ +E ++ EK +E+N P Sbjct: 122 NEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEK--QEENASSEIDYPP 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A ++ F +LE L E G+ RP + +++ L +F R +E+ +LRGI++++ Sbjct: 180 AE--DIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSV 236 Query: 247 DKFSRQ 252 +K++++ Sbjct: 237 EKWAKK 242 >gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 257 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 134/245 (54%), Gaps = 13/245 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LENALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + + + P +P F SLN++ AV ++ +E + + +++ + ++ TP Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243 Query: 247 DKFSR 251 K +R Sbjct: 244 QKAAR 248 >gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 242 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 138/238 (57%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 138/238 (57%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ + ++F + Sbjct: 9 IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++AIAD + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE Sbjct: 68 FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190 + + ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++++K Sbjct: 186 -LEHFFNHTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 6/184 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V + AR + + ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGST-VYQEPAARWVAHGSGDILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LADALADVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V SE PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMDVKSEA-----VQPAVAGQLSALH 178 Query: 197 DYLE 200 D L+ Sbjct: 179 DRLD 182 >gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421] gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421] Length = 246 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 8/249 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV Q N+G +AR + NF+L++L LV P E+AR + +A V+D R+ ++ Sbjct: 5 IVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARIVAS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD + TTAR R L P E A L R G +FG E GL+NEE Sbjct: 65 LSQALADCTRVAGTTARTRTVSDPPLLPAEGARWL--RADKG-TAAYVFGPEDRGLSNEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL-SF 195 +A + P +PSLN++QAV + + +S S QN P + E+L F Sbjct: 122 LAHCQRTVQIPTGAAYPSLNLAQAVGICAYALFTDSKPPSPVF---QNEPMPEAEVLEGF 178 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 +LE +L GY + ++K L+ +F R L +EV LLRG++ +D S Q+ Sbjct: 179 YGHLERTLLAIGYLQEHTAERK-LEKFRRLFNRAGLTAQEVALLRGVLRQIDWASTQNPA 237 Query: 256 RNNVLLQKT 264 R L T Sbjct: 238 RQLPLTPDT 246 >gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina ymp] Length = 262 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 126/251 (50%), Gaps = 11/251 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV P D +PS A + ++ A V+D+ +V Sbjct: 10 VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPED-FPSGDAVARASGATDVLDAAQVVDT 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E + E+ G V ++FGRE GLTNEE Sbjct: 69 LEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGGEVALVFGREYAGLTNEE 128 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKEQNTPA 187 + + P NP F SLN++ AV ++ +E + +S E + A Sbjct: 129 LQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLETTAMLNSQAA 188 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL SF +L L G+ P +K + ++ L ++ R + + E+ +LRGI++ + Sbjct: 189 TADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNILRGILTETE 247 Query: 248 KFSRQSSRRNN 258 K R + Sbjct: 248 KAVRGEPHKQG 258 >gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus capsulatus str. Bath] Length = 247 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L+ L LV+P+ +PSE+A + ++ AD ++ + R+F + Sbjct: 7 IVLVETTHPGNIGGVARAMKNMGLSDLALVSPKI-FPSEQATARASGADDLLAAARLFGS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK+AIAD + +AR R L P+ AA + + G I+FGRE GLTN E Sbjct: 66 LKDAIADCQLVIGASARLRTIAWPELDPRTAAAEIAG-LPEGTRSAIVFGREHSGLTNGE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LLSF 195 + + ++ NP F SLN++ AV ++ +E + + + ++ P GE + SF Sbjct: 125 LEQCHFLLHIASNPEFSSLNLACAVQVVAYELY---LAAGQGGSGRRSPPLADGEQMASF 181 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 D+LE +L + + ++ L IF + +E+ LLRGI++ Sbjct: 182 FDHLERTLYDIRFLHARRSSPSIMRRLRRIFNSARIEAQEIHLLRGILTA 231 >gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] Length = 254 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 140/256 (54%), Gaps = 8/256 (3%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P++ + K ++L P NIG ARAM L++L LV P+ +PS +A + ++ A Sbjct: 4 PEVPDFLKNIRVVLARPSHPGNIGSAARAMKTMGLSRLYLVEPKT-FPSPEADTLASGAV 62 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ V + L EA++D+ A T+R R + P++ L R G+ V ++F Sbjct: 63 DLLQHAVVVNTLAEALSDVTVACALTSRRRELTTPLSTPRQTTPELVARARDGEQVALVF 122 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G E +GL+ +E+ N +++ P NP + SLN++ AV +M +E ++ V + ++ + Sbjct: 123 GNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSHTGVDVDY-LRAEAE 181 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIV 243 AT+ E+ F +L+ +L + GY+ E++ ++++ L ++F R L+REE+ +LRG + Sbjct: 182 SATRDEVEGFCGHLDQTLADIGYY---ERRNGERLMRRLRTLFNRAHLLREEIDILRGFL 238 Query: 244 STLDKFS-RQSSRRNN 258 + + + R RR Sbjct: 239 KQVQRVAHRDDGRRQQ 254 >gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas fluorescens Pf-5] Length = 257 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 136/244 (55%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV PR +PS +A + ++ A ++++ +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-VFPSHEADARASGATDILENAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+A ++ T+AR+R +L P+E+ + + E G V ++FGRE GLTN+E Sbjct: 66 LEDALAGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTP-----A 187 + + + P +P F SLN++ AV ++ +E + + + + K E +P A Sbjct: 126 LQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVRMSWLAAQGQPSKVEKDEVASPRSDELA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F ++L+ +L + P EK + ++ L ++ R + R E+ +LRGI++ Sbjct: 186 TMDELERFYEHLQQTLVAIDFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 251 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 6/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+ + +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLGNAQVVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR R+ ++ P+E G+ + ++FGRE GLTNEE Sbjct: 66 LEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192 + + + P NP F SLN++ AV ++ +E + + ++ + + AT E+ Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAGVAPAQVEKVDASELATMDEM 185 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE +L G+ P K K ++ L ++ R + R E+ +LRGI++ K R Sbjct: 186 ELFYDHLEKTLVGIGFLDPA-KPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243 >gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 6/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+ NIG ARAM N NL++L LVNP+ G+PS A + ++ AD V+ V + Sbjct: 14 VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSATATARASGADDVLSDAIVCES 72 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+ H + +AR RN ++ + + Q V +IFG E+ GLTN+ Sbjct: 73 LEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLTNK 132 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194 E+ L +++ P NP + SLN++ A+ + + +N I ++ KE + A+ EL S Sbjct: 133 ELDLCQILMTIPGNPDYFSLNVASAIQVFAY---QNYIYNTPTEFKENVSKLASFDELES 189 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +L LE YF+ + ++ L F + E EEV + RGI+ + F R Sbjct: 190 FYTHLTQVLEHIEYFKDQHSQTLLMRRLRCFFTKVEPKIEEVSIFRGILKNIKPFKR 246 >gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] Length = 248 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM N L +L LV PR+ +P+ +A +A A V+ + + Sbjct: 12 IVLVNTTHPGNIGGAARAMKNMGLAELYLVQPRE-YPAPRAVWRAAGARDVLAGATIVES 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133 + EAIAD + T+AR R +L P+E E+I+S ++FGRE GLT Sbjct: 71 VDEAIADCALVVGTSARERRIPWPLLNPRECG----EKIYSEAAEHKTALLFGREDRGLT 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189 N+E+ + + P NP + SLN++ AV ++ +E S+ + N+ P T Sbjct: 127 NDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVRMASLADDQGNLPSLSEWDQPPVTA 186 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 G+L F ++L ++ E ++ P E K++L + +F R + + EV +LRG++S + + Sbjct: 187 GDLEFFHEHLATTMAELQFYDP-ENPKQLLTRMRRLFNRVRMDQMEVSILRGLLSAVQR 244 >gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] Length = 241 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ R + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFIR----NQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] Length = 251 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 13/241 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E+A S +A A V+D+ + F++ Sbjct: 16 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQPI-DEQAVSLAAGAKDVLDNAQTFAS 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAIAD H + T+AR R+ +++ P++ + + G+ V ++FGRER GLTNEE Sbjct: 75 FEEAIADCHIVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGK-VALVFGRERIGLTNEE 133 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-------ATK 189 + + ++ P NP + SLN++ AV L +E + + Q +P + Sbjct: 134 LLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVRMAWLAQQDLQKNSQISPLAERAAYPSN 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L F ++ E +E G+ R ++ L ++ R L E+ LLRG+++ ++K+ Sbjct: 194 EALEYFFEHTERLYKELGFIR----NDAVMLKLRRLYQRARLETNELNLLRGMLTAVEKY 249 Query: 250 S 250 Sbjct: 250 H 250 >gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter uraniireducens Rf4] Length = 245 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 7/237 (2%) Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +KG + I+LV Q NIGMV RAM N LT LRLVNP E + + + D ++DS Sbjct: 3 SKGTIAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNPCQVDHPEALKFAVSARD-LLDS 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R+FS+L+EA+ D ATT R+ + + P+E A +N + V ++FGRE Sbjct: 62 ARIFSSLEEALEDCEISVATTRRHGKYRQEISTPEEIAARVNAQA-GMHRVALVFGREDS 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLT +E+A+ + P + SLN++QAVL+ +E ++ VS E A Sbjct: 121 GLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFKDKGVSP---ASEPRPLAGSA 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + S +E +L G+ P + ++ L I+ R EL EV +LRG++S +D Sbjct: 178 AMESLYGQMERTLLRIGFLNP-QNPAHLMRTLRRIYSRAELDEREVAVLRGMMSQID 233 >gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893] gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893] Length = 284 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 17/257 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L L LVNP +P E + + +A A ++D V S Sbjct: 20 IVLVETSHSGNIGAVARAMKNMGLGNLWLVNPVS-FPDEASYARAAGASDILDKATVVST 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + T+AR R V+AP AA +++ +GQ V ++FGRE GL+NEE Sbjct: 79 LDEAIADCVCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQ-VALVFGRENHGLSNEE 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKG- 190 + + I P NP + SLN++ AV +M +E + + E +K P +G Sbjct: 138 LQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLKGLEGGDGSPYLKPMMAPGDEGW 197 Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ F +LE L + + R + ++++ L +F R L + E+ +LRGI Sbjct: 198 DVPPAPVRDVEGFFSHLEQVLVDVDFHR-RDNPRQLMTRLRRLFQRAGLDQMEINILRGI 256 Query: 243 VSTLDKFSRQSSRRNNV 259 ++ + K + + N Sbjct: 257 LTAVQKSAGAAETAKNT 273 >gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis DSM 16069] Length = 277 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 27/267 (10%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + PQL +S K I+L NIG ARAM L L LV P+D +PSE+A S+ Sbjct: 11 FDPQLLDSIK---IVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPKD-YPSEEAMVRSSG 66 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A V+++ +V ++EA+AD I T++RNR ++ P+E ++ E + + V I Sbjct: 67 ALDVLENAQVVDTVEEALADCRLIIGTSSRNRALPWPLIEPREMGELIKEHV-EARPVAI 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------ 177 +FGRE GL NEE+ L + ++ P NP + SLN++ AV L+ +E S + +E Sbjct: 126 MFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIRLASKMIAEIVRKDS 185 Query: 178 ---------------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222 ++ KE A+ E+ ++LE ++ + ++ P E+ K + + Sbjct: 186 QPVDAELGYDAQAESEHDKESEQLASFEEVDGLYNHLESTMNKTEFYNP-EQPKLLPARI 244 Query: 223 YSIFIRPELMREEVFLLRGIVSTLDKF 249 I + L + EV +LRG +S++DK+ Sbjct: 245 RRILAKARLNKGEVNILRGFLSSIDKY 271 >gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus DSM 2379] Length = 251 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 5/231 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+PQ NIGMV RAM N L++LRLV D + E + + + D +++ ++ + Sbjct: 14 IVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGCDRFHPESLKFAVSAKD-LLERAELYDD 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD TT R+ + +L+P + A +L R ++FGRE GLT +E Sbjct: 73 LASALADCALTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSGLTTDE 132 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 ++L + P + + SLN+SQAVLL C E S PAT E+ + Sbjct: 133 LSLCRWHATIPTSSEYGSLNLSQAVLLF---CYELGKASDSPGGGRTEIPATSAEMETLF 189 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ SL+ G+ + ++ L I R EL E+ +LRG+ S +D Sbjct: 190 SQMDTSLQRIGFLNE-QNPGHIMRSLRRILFRSELDNRELAILRGMFSQVD 239 >gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1] gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58] gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 257 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 11/251 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA++ + T+AR+R +L P+E A E + + V ++FGRE GLTNEE Sbjct: 66 LEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187 + + P +P F SLN++ AV ++ +E + + K K + NT Sbjct: 126 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 186 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 244 Query: 248 KFSRQSSRRNN 258 K +R S + + Sbjct: 245 KVARGLSYKRS 255 >gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia HI2424] Length = 289 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ ++FG ER GL NE Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAATQASAQVGTG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + S + E T A E Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSDE 224 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275 >gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 7/244 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 AP L ++ V +LV N+G ARA+ N LRLV PR D + + ++ Sbjct: 15 APSLDDT----VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFAS 70 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A+ V+ + +V L +A+AD + A +AR R+ + P+ + G+ V Sbjct: 71 GAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVA 130 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +FG ER+GL+N ++ +A++S P NP + SLN++QAV ++ WE + + + + + Sbjct: 131 FVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKGIGLHAVRPAQA 190 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ AT GE+ L ++E +L P +K+L L + R EL R+EV +LRG+ Sbjct: 191 ESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGV 249 Query: 243 VSTL 246 + + Sbjct: 250 CTAV 253 >gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] Length = 244 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 13/242 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM L QL LV+P+ E+A S +A A V+D+ + F++ Sbjct: 9 IVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQPI-DEQAVSLAAGAKDVLDNTQTFAS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAIAD + T+AR R+ +++ P++ + + G+ V ++FGRER GLTNEE Sbjct: 68 FEEAIADCQLVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGK-VALVFGRERIGLTNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE----- 191 + + ++ P NP + SLN++ AV L +E + + Q P T+ Sbjct: 127 LLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIRMAWLAQQDLQKNSQIVPLTESSDYPSN 186 Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L F ++ E +E G+ R ++ L ++ R L E+ LLRG+++ ++K+ Sbjct: 187 EALEYFFEHTERLYKELGFIR----NDAVMLKLRRLYQRARLETNELNLLRGMLTAIEKY 242 Query: 250 SR 251 R Sbjct: 243 RR 244 >gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12] Length = 249 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 15/242 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM N +L LV P++ +PS+ A S A +++ +F+ Sbjct: 17 IVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKE-FPSDVATYRSKAAKDILEEAEIFNT 75 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134 L++A+AD + T+AR+R +L PKE+A +V N Q V ++FGRE GLTN Sbjct: 76 LEQAVADCELVIGTSARDRKVPWPILNPKESAETVVKN---LPQQKVALVFGREDRGLTN 132 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ L N + P +P + SLN++QAV ++V+E S+ +E +V+ NT T+ Sbjct: 133 EELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIRVASLSDTEDKNYWDVELANTQQTEM 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L++ +D L +E F V+ +K+L + F R + E + RG+ +T+ K Sbjct: 193 -LINHMDELMQQVE----FYDVDNPRKLLLRVRRFFKRSNIDVMEANIFRGLFATIQKKL 247 Query: 251 RQ 252 +Q Sbjct: 248 KQ 249 >gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] Length = 256 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG VARAM N LT+L LV PR +P +A + ++ A+ +++ +V + Sbjct: 7 VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRL-FPHHEADARASGANDILEKAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR+R +L P+E + E G + ++FGRE GLTNEE Sbjct: 66 LEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKN---VKEQNTPA 187 + + + P +P F SLN+ AV + M W E EK+ + A Sbjct: 126 LQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVRMAWLAAEGQPSKVEKDEVASIKSGELA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI++ Sbjct: 186 TMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans ATCC 25259] Length = 256 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 8/235 (3%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L+QL LV+P +P+ +A + ++ A V+ RV L EA+AD Sbjct: 24 NIGAAARAMKTMGLSQLVLVDPAV-FPNSQADAMASGAVDVLAGARVCPTLTEALADTTL 82 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAII 144 +AR R+ VL P EAA+ L + Q V ++FG E GL+NEE++L ++ Sbjct: 83 ALGVSARRRDIVAEVLNPAEAALRL---LGEAQRAPVALVFGNETSGLSNEELSLCQGLV 139 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204 + P NP + SLN++ AV ++ +E + + E + A+ E+ F +LE +L Sbjct: 140 TIPANPDYSSLNLAAAVQVLSYEIRQAWLDRPSWPAPEIDA-ASGDEVEKFYGHLEAALA 198 Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259 + + P K ML L +F R L +EEV +LRGI+S R + R V Sbjct: 199 DLEFLNPGSPGKLML-KLRRLFARTRLAKEEVNILRGILSAAQDAKRAARRSGTV 252 >gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As] Length = 260 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 7/244 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 AP L ++ V +LV N+G ARA+ N LRLV PR D + + ++ Sbjct: 15 APSLDDT----VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFAS 70 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A+ V+ + +V L +A+AD + A +AR R+ + P+ + G+ V Sbjct: 71 GAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVA 130 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +FG ER+GL+N ++ +A++S P NP + SLN++QAV ++ WE + + + + + Sbjct: 131 FVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKEVGLHAVQPAQT 190 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ AT GE+ L ++E +L P +K+L L + R EL R+EV +LRG+ Sbjct: 191 ESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGV 249 Query: 243 VSTL 246 + + Sbjct: 250 CTAV 253 >gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2846] Length = 241 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810] Length = 241 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae] gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] Length = 241 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella frigidimarina NCIMB 400] Length = 240 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P ++ + +A A ++ ++ + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPR-AEPDGQSIALAAGASDILKNLTRVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + AT+AR+R +L P+EA + L + +G V I+FGRE GL+NEE Sbjct: 66 LEEAIADCSLVIATSARSRTLDWPMLDPREAGLKLTQESLNGP-VAIVFGRENHGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + +E P T EL F Sbjct: 125 LQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTETPAVTDEYPLTS-ELERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L + G F +++ L ++ R + E+ +LRGI++++DK Sbjct: 184 VHLESTLSKTG-FVIKNHPGQVMTKLRRLYTRARIEAPEMNILRGILTSIDK 234 >gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] Length = 241 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 8/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ N+G +ARAM N LT L LV+P D +PSE+A S +A A ++++ + S Sbjct: 7 IVLINTFHPGNVGAIARAMKNMGLTNLYLVDPND-YPSEEATSRAAGAVDLLENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EAIAD + T+AR+R ++ +E A V+ E + NV I+FGRE GL N+ Sbjct: 66 LEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAV--DHNVAIVFGRETTGLLND 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194 EIA + + N +P LNISQAV ++ +E M N + E KE K ++ Sbjct: 124 EIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIWMANQ--NKENYKKETPEYPHKKDMDL 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE +L F K+LD L+ F R ++E+ +LRG+++ + + Sbjct: 182 FYEHLEETLYGIN-FIIRSHPGKVLDKLHRFFNRSRPEKQELGILRGVLAAVQR 234 >gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1] gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1] gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] Length = 257 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTNEE Sbjct: 66 LEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187 + + P +P F SLN++ AV ++ +E + + K K + NT Sbjct: 126 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 186 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 244 Query: 248 KFSRQSSRRNN 258 K +R S + + Sbjct: 245 KVARGLSYKRS 255 >gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] Length = 235 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P+ N+GMVARAM NF L +L LV P SE R SS D V++ R+ Sbjct: 4 VVLVGPREAANVGMVARAMKNFGLKELVLVAPEIRDMSEAYRLSSRAHD-VLERARIVPT 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + TTAR R + + A AA L + V ++FGRE +GL NEE Sbjct: 63 LDEAIADCVLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENFGLFNEE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + ++ P P + SLN++QAVLL+ +E + S+ + PA L ++ Sbjct: 123 LDRCHYVLHIPTAPDYASLNLAQAVLLVAYE-----LFQSQAGALPETDPAPAASLEAYF 177 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 LE L E GY P + ++ + + L EEV +LRG++ Sbjct: 178 RDLEAYLIEIGYTDP-PRLPSVMRHFRRMAHKALLTEEEVRMLRGLL 223 >gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336] gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus 2336] Length = 246 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 133/240 (55%), Gaps = 18/240 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L QL LV P+ G E+A + +A A+ V+ S V + Sbjct: 7 IVLVETSHSGNIGSAARAMKTMGLNQLCLVAPKQGI-DEQAVALAAGAEDVVKSAVVADS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQNVGIIFGRERWGLT 133 +A+AD I T+AR R+ +++ P+E A E++ S Q V I+FGRER GLT Sbjct: 66 FSQAVADCSLIIGTSARLRHLQSTLIEPRECA----EKVIQSLSSQKVAIVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTPAT 188 N+E+ + ++ P NP + SLN++ AV L+ +E + + ++S K +K+ N T Sbjct: 122 NDELLKCHYHLTIPANPEYSSLNLAMAVQLISYE-LRLAWLASLKELKQPFSVIANNYPT 180 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F + E ++ G+ + + ++ L ++ R +L + E+ +LRG++S ++K Sbjct: 181 FQELEHFFAHTEQLYQQLGFI----QNQGVMKKLRRLYQRVQLEKNELNILRGMLSAVEK 236 >gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] Length = 247 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 3/234 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM N L L LV PR + S ++ AD ++ + R N Sbjct: 7 IVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNARTVDN 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 L++A+ D + +AR+RN ++ P+E L + S Q V ++FGRE GLTN Sbjct: 67 LEDAVGDCTLVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDSGLTNT 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194 E+ +A + P NP F SLN++ AV ++ +EC S + + P A+ EL Sbjct: 127 EMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLACQAESPEMQEPDAAPLASHEELEH 186 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +LE +L + G+ P + ++++ L +R R E+ +LRGI+S + Sbjct: 187 YFAHLERTLIDIGFHDP-DMPRQLMARLRRFTLRAHPERMELNILRGILSATQR 239 >gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] Length = 253 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 22/222 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 ++LV + ENIGM ARA N +RLV P + W EKAR ++ V+D V+V Sbjct: 8 VVLVQTRFPENIGMAARACVNMGSRSIRLVAP-ERWDREKARPLATPKGQGVLDDVQVLP 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ A+AD + TTAR +S+L+P++AA + + + G+ V I+FG E GL N+ Sbjct: 67 DVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDND 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELL 193 I +++ P NP SLN++Q+VLL+++EC + ++ + + + TPA G ++ Sbjct: 127 AIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAK-AVRARQHEAAGEKTPAEGGSGRVI 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 S DY +++LD+L + +R + + + Sbjct: 186 SSADY-----------------ERLLDNLKDMLLRLDCLHGD 210 >gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2] Length = 251 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 1 MVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTNEE Sbjct: 60 LEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 119 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187 + + P +P F SLN++ AV ++ +E + + K K + NT Sbjct: 120 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 180 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 238 Query: 248 KFSRQSSRRNN 258 K +R S + + Sbjct: 239 KVARGLSYKRS 249 >gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 228 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 17/227 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGST-VHQEPAARWVAHGSGDILDNVQMFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPEA-----TQPAVAGQLSALR 178 Query: 196 --LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 +D L ++L VE +K+ D L+ R E R+ L R Sbjct: 179 DRMDRLLVTL-------AVEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217 >gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20] gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 241 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 65 FDEAVDDCPLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] Length = 247 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L L LVNP+ +P +A + ++ AD ++ +V ++ Sbjct: 8 IVLVETTHPGNIGAAARAMRTMGLCHLYLVNPKR-FPCAEATAMASGADKLLAQAKVCTS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI ++ +AR+R+ VL +++ +++ + G V I+FGRE GL+N E Sbjct: 67 LAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENSGLSNLE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + N + P NP + SLN++ AV +M +E S++ ++ E + A+ GE+ F Sbjct: 127 LDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVRMASMMDDSRHSAESPS-ASIGEIEGFF 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L + + K ++ L +F R L E+ +LRGI++ + K Sbjct: 186 RHLEQTLIKIDFLNS-SNPKLLMRRLRCLFFRAHLNVREINILRGILTAVQK 236 >gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] Length = 245 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 8/237 (3%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S G +ILV+PQ NIGMV RAM N L++LRLV D E + + + D +++ Sbjct: 4 SLTGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVAGCDHLHPEAFKFAVSARD-LLEQ 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +F +L +A+AD+ ATT R+ + +L+P +AA L + + + ++FGRE Sbjct: 63 AELFDSLADALADISVSVATTRRSGKYRQELLSPPQAAQALLQ---APGSAALVFGREDH 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+ +++L + P + + SLN++QA L+ +E ++ + + TPA G Sbjct: 120 GLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYELFG---AATAETGSLRRTPAPSG 176 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL ++E +L G+ P + ++ L IF R L EV +LRG++S +D Sbjct: 177 ELEPLFTHMEQTLLRIGHLNP-QNPGHIMRSLRRIFFRSGLDSREVAILRGMLSQID 232 >gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 246 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+ L LVNPR +P +A +A A VID+ RV + Sbjct: 7 IVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPRS-FPDAEATRLAAGATDVIDNARVVEH 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQN--VGIIFGRERWGL 132 + +A+ D + +AR +S+ P + + +E I Q+ V ++FGRER+GL Sbjct: 66 IAQAVGDCVQVVGASAR----LRSLPLPHFDDPEPMASELIEHAQDAPVALVFGRERFGL 121 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKG 190 TN+EI +S P NP + LN++QAV ++ +E Q P+ T+ Sbjct: 122 TNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRRAWRHHQASPATSQTPPSLPTRD 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +L +L G+ + + D L ++F R + R+E+ +LRG++STL+K Sbjct: 182 QMAHFEAHLHEALVTSGFL--TQPHARTEDHLRALFARAQPSRKELSILRGVLSTLEK 237 >gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] Length = 289 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R LAP+ AA ++ +G ++ ++FG ER GL NE Sbjct: 106 TLGDALSGVHWSIALTARTREYGPPRLAPRAAATQACAQVGTG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E++ S + E T A E Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEHASEPSAQPSGEAGTLAQSDE 224 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRG+ Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 275 >gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] Length = 256 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 19/248 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG VARAM N LT+L LV PR +P +A + ++ A+ +++ +V + Sbjct: 7 VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRV-FPHHEADARASGANDLLEKAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR+R +L P+E + G + ++FGRE GLTNEE Sbjct: 66 LEDALVGCNLVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------------MENSIVSSEKNVKEQ 183 + + + P +P F SLN+ AV ++ +E ME V+S K+ Sbjct: 126 LQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVRMAWLAAAGQPSKMEKEEVASTKS---- 181 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 AT EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI+ Sbjct: 182 GELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240 Query: 244 STLDKFSR 251 + K +R Sbjct: 241 TETQKAAR 248 >gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] Length = 258 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 13/250 (5%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60 P PQ +A+ +LV+P N+G ARA+ +QL LV PR + +A + Sbjct: 8 PAPPQAFRAAR---FVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAIAM 64 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ + R+ + L EA+A + + A TAR+R LAP+ AA R G Sbjct: 65 ASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPR-AAAGEARRQLDGGE 123 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSS 176 + +FG ER GL+NE + +AI P NP + SLN+SQA+ ++ +E +E ++ Sbjct: 124 IAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQ--AA 181 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 E + T A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 182 EHHDGAAGTLAQADEIEKMFAHLEQALVALEFLDP-RNPKKLMPRLRRLFSRAGLEREEV 240 Query: 237 FLLRGIVSTL 246 +LRG+ + Sbjct: 241 NILRGVAKHI 250 >gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163] gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 228 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 13/225 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGST-AHQEPAARWVAHGSGDILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F+ P E +L E+I + ++FGRE GLTNEE Sbjct: 64 LADALADVDFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLSF 195 + L++ + P+ +PSLN+ QAV++ ++ ++ VK + PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVFCYQ------LAGLMQVKPDAVQPAVAGQLSAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 D L+ L VE +K+ D L+ R E R+ L R Sbjct: 178 HDRLDRLLVNLA----VEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217 >gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxidans DMS010] gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxydans DMS010] Length = 253 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV NIG ARAM L+ L LV+P+ +PS +A + ++ AD ++ + +V +L Sbjct: 21 VLVGTTHPGNIGAAARAMKTMGLSNLHLVSPK-LYPSAEATARASGADDILHTAQVHDSL 79 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+ H +A +AR R+ V+ P++A L E+ ++ I+FGRE GL+NEE+ Sbjct: 80 DEALVGCHHAFAMSARLRHLPVPVVNPRQAVEQL-EKFDDNTHIAIVFGREHSGLSNEEL 138 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLSFL 196 +I+ P NP + SLN++ AV ++ +E M + EQ T +L Sbjct: 139 DRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSFQPQIDFGRIGEQREAITNDDLAHLY 198 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 D+ E SL G+ P E + ++ + +F R +L + E+ ++ GI+ Sbjct: 199 DHFERSLTTIGFLDP-ENPRHLMRRIKRLFNRADLDKNELHIMHGIL 244 >gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] Length = 245 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 ++LV Q NIGMV RAM N L+ LRLVNP D + K S+ N ++DS R+F Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLDAVKFAVSARN---LLDSARIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWG 131 ++L++AIAD F ATT R+ + P E + ER + + ++FGRE G Sbjct: 66 TSLEDAIADCEFSVATTRRHGKYRNEISTPAE----IVERFSACAPASRMALVFGREDSG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT +E+AL + F SLN+SQAVL+ +E ++ + VK+ A Sbjct: 122 LTTDEVALCRWQATIETADEFGSLNLSQAVLIFCYEFLKG---VAPAPVKQARDIAGSAS 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L ++E S GY P + M+ L IF R EL EV LRG++S +D Sbjct: 179 LEPLYQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQID 233 >gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] Length = 248 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 15/248 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+QL LV+P+ P+E++ + SA AD V+ + S+ Sbjct: 8 IVLVETSHPGNIGSAARAMKTMGLSQLYLVSPKV-LPNEESIALSAGADDVVKQAHIVSS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAIAD + T+AR R+ + + P++ + R G+ V I+FGRER GLTNEE Sbjct: 67 FEEAIADCSLVIGTSARARHLTTTAVTPRDCGELAIVRSAHGK-VAIVFGRERIGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-----PA---T 188 + + ++ P NP + SLN++ AV L+ +E + + + ++ + ++ PA Sbjct: 126 LLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-VRMAYLQKQQGYQLHHSRVAEMPAEGVV 184 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F E ++ G+ + ++ L +++R + R E+ +L+G+++ ++K Sbjct: 185 AEELEYFFHKTEQVYQQLGFI----QNSAVMKKLRRLYLRTAIQRNELNILQGMLTAVEK 240 Query: 249 FSRQSSRR 256 +S R+ Sbjct: 241 VITESHRK 248 >gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 228 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 17/227 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPEA-----AEPAVAGQLSALR 178 Query: 196 --LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 +D L ++L VE +K+ D L+ R E R+ L R Sbjct: 179 DRMDRLLVTL-------AVEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217 >gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] Length = 261 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 134/247 (54%), Gaps = 13/247 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+ NIG ARAM N L++L LV+P++ +P+EKA +A A V+++ RV S Sbjct: 11 MVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKE-FPAEKAVWRAAGATDVLENARVVST 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L EAI+D + T+AR R +L P+E +R + + V ++FGRE GLT Sbjct: 70 LDEAISDCGLVIGTSARERRIPWPLLTPRECG----DRCWFEAAKHPVAVVFGREDRGLT 125 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATK 189 NEE+ N + P NP + +LNIS A+ ++ +E +++ + E + PA Sbjct: 126 NEELHKCNYHVHIPSNPEYSALNISAALQVICYEIRMSALTAQEGKAPHFDDWDMPPADN 185 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 G L + +LE +L + + P + ++ + L +F R + + E+ +LRG+++++ + Sbjct: 186 GALEHYYAHLEDTLIKLEFLNP-DNPRQTVTRLRRLFNRIRMDQMELNILRGMLTSVQNY 244 Query: 250 SRQSSRR 256 + + Sbjct: 245 IYHTDEK 251 >gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+PQ NIG V RAM NF + LRLVNP + AR + A +++ R+F Sbjct: 7 CVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGARLFP 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----SGQNVGIIFGRERWG 131 +L A+AD + Y TT R + L P +AA R F G V +FGRE G Sbjct: 67 DLPSALADCNLAYGTTRRFGKYREDFLHPDDAA-----REFIPATQGGRVAWVFGREDKG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L E+ L ++ P + PS+N++Q+V + ++E + ++ K ++T ++ Sbjct: 122 LETSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSRVAAIACGKTAGRKST-SSIAT 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + ++ +L + G+ P + +L IF R L EV +LRG+ S LD + Sbjct: 181 LEAMYRHMRDTLTDIGFLDP-QNPDHILRSFRRIFGRAGLNDREVRILRGLWSRLDWLNG 239 Query: 252 Q 252 Q Sbjct: 240 Q 240 >gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] Length = 243 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 9/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+ L LVNP P A + SA A VI + ++ ++ Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHAIALSAGASDVIGNAKIVTS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + T+AR+R ++ P+E + ++ + V IIFGRER GLTNEE Sbjct: 66 LDEALEGCKLVIGTSARSRTLPWPMVEPRECGVKSVQQ-SNESPVAIIFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKGE 191 + N + P NP + SLN++ AV L+ +E + +EKN V E P + + Sbjct: 125 LQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAINEKNTQKSAVDEVEYPPAE-D 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K+++ Sbjct: 184 LERFYVHLETVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEKWAK 242 Query: 252 Q 252 + Sbjct: 243 K 243 >gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7] gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7] Length = 308 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV + Sbjct: 58 VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDS 116 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R +L P+E A E + + ++FGRE GLTNEE Sbjct: 117 LEEALVGCSVVLGTSARDRRIPWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTNEE 176 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187 + + P +P F SLN++ AV ++ +E + + K K + NT Sbjct: 177 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 236 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 237 TADELELYYAHLEKTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 295 Query: 248 KFSR 251 K +R Sbjct: 296 KVAR 299 >gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146] gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri 93-146] Length = 238 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 9/181 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P EN+G ARAM T LR+V+ R DG AR + A ++D F Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSRADG--ESAARWVAHGAGDILDGACHFD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ D+ F A+TAR+R F P+E VL E+ N ++FGRE GLTN+ Sbjct: 63 TLAQALEDIDFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + P+ +PSLN+ QAV++ ++ +SS V+ PA +G+ L+ Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ------LSSLMQVQAALAPAAQGDQLTA 176 Query: 196 L 196 L Sbjct: 177 L 177 >gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21] gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21] Length = 245 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 ++LV Q NIGMV RAM N L+ LRLVNP D + K S+ N ++DS R+F Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLDAVKFAVSARN---LLDSARIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWG 131 ++L++A+AD F ATT R+ + P E + ER + + ++FGRE G Sbjct: 66 TSLEDALADCEFSVATTRRHGKYRNEISTPAE----IVERFSACAPASRLALVFGREDSG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT +E+AL + F SLN+SQAVL+ +E ++ + K +E A Sbjct: 122 LTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGVAPAPAKQAREL---AGSAS 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L ++E S GY P + M+ L IF R EL EV LRG++S +D Sbjct: 179 LEPLYQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQMD 233 >gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] Length = 241 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 19/246 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+ L LV PR E+A + SA A+ V+ + + Sbjct: 7 IVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQAI-DEQAIALSAGAEDVVKQAVIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+AD + T+AR R+ +++ P++ A+ E + SGQ V I+FGRER GLTNEE Sbjct: 66 FDKAVADCSLVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQ-VAIVFGRERIGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELL-- 193 + ++ P NP + SLN++ AV L+ +E + + +S VKE + + +T G++ Sbjct: 125 LLKCRYHLTIPANPEYSSLNLAMAVQLVCYE-LRMAFLS----VKEMSLSLSTIGKIYPN 179 Query: 194 -----SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F + E E G+ + + ++ L ++ R EL + E+ +LRG++S ++K Sbjct: 180 FSDIEHFFQHTERLYTELGFI----QNQSVMQKLRRLYQRAELEKNELNILRGMLSAVEK 235 Query: 249 FSRQSS 254 + SS Sbjct: 236 RIKSSS 241 >gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] Length = 255 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 1 MTPYAPQLQNSAKGPV-----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M YAP L N K + I+L++ NIG ARAM LT L LV P+ G + Sbjct: 1 MVEYAPLL-NKIKMIMLENIRIVLIETSHSGNIGSTARAMKTMGLTDLVLVAPKQGV-DD 58 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A + +A A+ V+ S V N EA+AD + T+AR R+ S++ P+E Sbjct: 59 QAIALAAGAEDVVKSAVVVENFSEAVADCSLVIGTSARLRHLQNSLIEPRECGEKAINHA 118 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIV 174 SG+ V I+FGRER GLTNEE+ + ++ P NP + SLN++ AV L+ +E M Sbjct: 119 ISGK-VAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAT 177 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 E+N K T + LDY E+ + + ++ L ++ R E+ + Sbjct: 178 QREENQKMTQTQPDVYPQMQELDYFFTRTEQLYQSLGFIQNQGVMQKLRRLYSRAEVEKT 237 Query: 235 EVFLLRGIVSTLDK 248 E+ +L G++S ++K Sbjct: 238 ELHILLGMLSAVEK 251 >gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493] gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493] Length = 240 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S RV + Sbjct: 7 IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ + ++ T+AR+R + P+E A + + N+ I+FGRER GLTNEE Sbjct: 66 LTAALEGCNLVFGTSARSRTLPWPLKTPRECA---EQSVQHQGNIAIVFGRERSGLTNEE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 +A ++ P F SLN++QAV ++ +E + + + + QNTP AT ++ Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIRMAKLNAVDP--RHQNTPIQQLATADQM 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + + P ++ K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7] gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7] Length = 241 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV NIG ARAM L+ L L PR + ++ +D + V+V S Sbjct: 7 VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE GLTNEE Sbjct: 66 LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSGP-VAIVFGRENHGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + +E E+ P + +L F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-ADLERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234 >gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 287 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 142/268 (52%), Gaps = 19/268 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L L LVNP+ +P E + + +++A V+D +V S+ Sbjct: 22 IVLVETTHSGNIGAVARAMKNMGLGNLWLVNPKS-FPDEASYARASSASDVLDRAQVVSS 80 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++D + T+AR R V++P +AA+ E G V ++FGRE GL+NEE Sbjct: 81 LDEALSDCVLVMGTSARGRKVPWPVISPPQAAVTAAENSARGP-VALVFGRESNGLSNEE 139 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----VSSEKNVKEQNTPATKG- 190 + + I P NP + SLN++ AV ++ +E + + V S ++ P +G Sbjct: 140 LQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLRGLEEVESSPYLESMVEPGDRGW 199 Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ F +LE L++ + R E ++++ L +F R +L + E+ +LRGI Sbjct: 200 DVPPATVNDVEGFFGHLEQVLQDVDFHR-RENPRQLMTRLRRLFQRAKLDQMEINILRGI 258 Query: 243 VSTLDK--FSRQSSRRNNVLLQKTEKSE 268 ++++ K +R+ RN ++ + Sbjct: 259 LTSVQKATVAREGVGRNTTAAGAVDEGQ 286 >gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 228 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 6/184 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V + A+ D ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGSTVHQEPAARWVAHASGD-ILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTN+E Sbjct: 64 LAEALVDVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAEFMQVKPEA-----VQPAVAGQLSALR 178 Query: 197 DYLE 200 D L+ Sbjct: 179 DRLD 182 >gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1] gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 264 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 16/260 (6%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 +P AP + + + ++LV+ NIG ARAM N L++L LV+PR +P +A + + Sbjct: 3 SPRAPAVLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPRV-FPHHEADARA 58 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A ++++ +V + L++A+ + + T+AR+R +L P+E + E G + Sbjct: 59 SGAGDILENAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEI 118 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVS 175 ++FGRE GLTN+E+ + + P +P F SLN+ AV + M W + Sbjct: 119 ALVFGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAQGQPTK 178 Query: 176 SEK----NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 EK +VK AT EL F ++LE +L + P EK + ++ L ++ R + Sbjct: 179 IEKEEVASVKSAEL-ATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSV 236 Query: 232 MREEVFLLRGIVSTLDKFSR 251 R E+ +LRGI++ K +R Sbjct: 237 SRAEMNILRGILTETQKAAR 256 >gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 257 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 13/247 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+V P N+G ARA+ L LV PR D A+S ++ A V+ SVR+ Sbjct: 11 IMVRPSHPGNVGAAARAIKTMGFHDLCLVAPRFPDVLELPDAQSLASGATDVLASVRIVP 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R ++AA V + + S ++ V I+ G ER GLT Sbjct: 71 TLEEALAPITLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAIVLGTERSGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------SIVSSEKNVKEQNT 185 NE++AL I P NP + SLN+SQA+ L WE + S+E E + Sbjct: 131 NEDVALCQRICHIPANPEYSSLNVSQALQLAAWELRYTLASAASLPLLPSTEGQANEGDQ 190 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A ++ + + + E ++ E G+ P KK++ + +F R L +EV +LRG+ + Sbjct: 191 AAPGEKVQALMTHWEQAITEVGFLDPAH-PKKLMPRMRHMFGRNGLTHDEVDMLRGLCTA 249 Query: 246 LDKFSRQ 252 + K +++ Sbjct: 250 MIKAAKK 256 >gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] Length = 251 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 12/234 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV Q NIGMV RAM N L LRLVNP +A + +A V+D R+F++ Sbjct: 15 IVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNPCQ-VDHPEAHKFAVSARDVLDGARLFTS 73 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133 L++A+ D ATT R+ + + P+E A ER+ S V ++FGRE GLT Sbjct: 74 LEDALRDCEISVATTRRHGKYRQEISTPQEIA----ERVRSQAAMHRVALVFGREDSGLT 129 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 EE+AL + P + SLN++QAVL+ +E + VS ++ + A + Sbjct: 130 TEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQEVSPAQDTR---LLADSAAME 186 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + +E +L + G+ P E ++ L I+ R EL EV +LRG++S +D Sbjct: 187 AMYRQMEKTLLKIGFLNP-ENPAHIMRTLRRIYSRAELDEREVAVLRGMMSQID 239 >gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] Length = 243 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 9/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + +V + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNAKVVKS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + T+AR+R ++ P+E + E+ V I+FGRER GLTNEE Sbjct: 66 LDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQAKDAP-VAIVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNTPATKGE 191 + N + P NP + SLN++ AV L+ +E + +EKN + E P + + Sbjct: 125 LQRCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAIAEKNTQTSVDDEVEYPPAE-D 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K+++ Sbjct: 184 LERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEKWAK 242 Query: 252 Q 252 + Sbjct: 243 K 243 >gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] Length = 248 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 16/242 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N + +L LV P+ +P A + ++ A ++++ V Sbjct: 7 IVLVNTTHPGNIGGVARAMKNMDFAELHLVEPKK-FPHVNADARASGATDLLENALVHET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + T+AR R+ V+ P+E A ++ + + + I+FGRE GLTNEE Sbjct: 66 LEEAIADCQLVVGTSARGRHIPWPVVDPRELAAIVGP-VMDEKKIAIVFGREDRGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 + L + + P NP F SLN++ AV ++ +E S+ ++E ++ P Sbjct: 125 LHLCHYHVHIPSNPEFSSLNLAAAVQVITYELRMASLYAAE---NAEHRPQWGTDWDIDL 181 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A G+L +LE +L + + P E ++++ L +++R + EV +LRGI++ Sbjct: 182 ADSGDLERLFAHLEETLVDIEFLDP-ENPRQLMPRLRRLYLRAIPDKVEVNVLRGILTAT 240 Query: 247 DK 248 K Sbjct: 241 QK 242 >gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] Length = 239 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L QL LV P+ +P A +++A ++ V Sbjct: 8 IVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQ-SFPHINASVRASHAIDILADAIVVDQ 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTN 134 L+EA+ D ++ T+ R R L P+ AA E+I + Q + I+FG+ER GLTN Sbjct: 67 LEEALGDCQLVFGTSTRVREFNWVSLTPRVAA----EKIMNHCQQKIAILFGQERCGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 +E+ + ++ P NP + SLN++ AV ++ +E + N+ + EKN+K++ P A + Sbjct: 123 KELQRCHFQMTIPANPEYNSLNLAAAVQIVCYE-LRNAFL-QEKNIKKRTVPLADVKQHD 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F L+ L++ + +P + + ++D L IF R EL +E+ +L+GI S L+K Sbjct: 181 YFYGQLQKRLKKIEFLKP-NRSQHVMDKLRRIFSRAELDSDEIKILQGIFSALEK 234 >gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae BGR1] Length = 284 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ + R+ Sbjct: 45 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVAGVLADPEAVAMASGADDVLAATRIVP 104 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+A + + A TAR+R LAP+ AA ++ SG+ + +FG ER GL+NE Sbjct: 105 TLADALAGVQWSVALTARSREYGPPRLAPRAAAETARAQLASGE-IAFVFGNERVGLSNE 163 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGEL 192 + +AI P NP + SLN+SQA+ ++ +E + +++S + T E+ Sbjct: 164 HVERCSAIAHIPANPEYSSLNLSQAIQVLAYE-LRVALLSGSPGGRHDGAAGTLARADEI 222 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 223 EGMFAHLEAALVALDFLDP-RNPKKLMPRLRRMFSRAGLEREEVNILRGIA 272 >gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] Length = 260 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 132/256 (51%), Gaps = 23/256 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P NIG ARAM LT+L LV+P + S + +A A VID ++ N Sbjct: 7 IILVEPSHPGNIGSAARAMKTMGLTELYLVDPLEKIDSHTI-ALAAGASNVIDKAKIVDN 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+A+ I T+AR+R + +L P+E + ++E F+ V ++FGRER GLTN Sbjct: 66 LDQAVAECSLIIGTSARSRTHAWPMLHPRECGVKSVSEAHFA--PVALVFGRERSGLTNH 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPAT----- 188 E+ + + P NP + SLN++ AV ++ +E + N+ + + + V E N P++ Sbjct: 124 ELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYE-IRNAWLDATRVVTEPPSNLPSSLPSCA 182 Query: 189 ----------KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 +L F LE L + G+ R +++ L +F R L E+ + Sbjct: 183 VKQKTALYPPNEDLERFYQCLEQVLGDIGFIRQAH-PGQIMTKLRRLFTRARLETVELHI 241 Query: 239 LRGIVSTLDKFSRQSS 254 LRGI+ +D+ + + Sbjct: 242 LRGILHLIDESKKHHA 257 >gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2866] Length = 241 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 EA+ D + T+AR R+ +++ P+E A E++ + + + I+FGRER GLTNE Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGKIAIVFGRERIGLTNE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKGE 191 E+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E++ P T + Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKSYP-TVDQ 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++K Sbjct: 180 LAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232 >gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 279 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-MYPHPDIQALAAGAQDLLEQVEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 +AL+N ++ PVN + LN++QA+ ++ +E + + E P T+G+ + Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLTQGQSMQWD 196 Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 256 SRVQALTSGKWKKASSDKED 275 >gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3] gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3] Length = 241 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV NIG ARAM L+ L L PR + ++ +D + V+V S Sbjct: 7 VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GLTNEE Sbjct: 66 LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLTGP-VAIVFGRENHGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + +E E+ P + +L F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-ADLERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234 >gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 256 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++ + +V + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPRL-FPHHEADARASGAGDILANAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ + + T+AR+R +L P+E + E G + ++FGRE GLTN+E Sbjct: 66 LEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECME---NSIVSSEKNVKEQNTPA 187 + + + P +P F SLN+ AV + M W E + I +E T A Sbjct: 126 LQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAEGKPSKIEKTEVTSPRSETLA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F ++LE +L + + P EK + ++ L ++ R + R E+ +LRGI++ Sbjct: 186 TMDELERFYEHLEQTLVDIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244 Query: 248 KFSR 251 K +R Sbjct: 245 KAAR 248 >gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] Length = 255 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 4/241 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P N+G VAR NF + QLRLV+PR E+AR + + V+D + Sbjct: 6 VVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQAALHP 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L A+AD H + AT+ R + P+ + L+ Q V ++FGRE GL+N Sbjct: 66 DLASAVADCHRVVATSGRRDGEPLPLQGPETSLAWLSGGPCD-QTVALVFGREDRGLSNG 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGELL 193 E+ + +++ P + SLN+S AV L + W + + +E P +GEL Sbjct: 125 ELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQRTAHAAEPPEEVLEPCRRGELE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + + E L E G+ P +M + ++ R + EV LLRG+V L SRQ Sbjct: 185 ALVADAEALLLEVGFLYPHTADARM-AKVRALLQRGGISSGEVALLRGMVRQLRWASRQG 243 Query: 254 S 254 + Sbjct: 244 A 244 >gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] Length = 243 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 5/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ NIG ARAM L+QL LV+P P EK+ + +A A+ ++ ++R+ Sbjct: 8 IILVNTSHTGNIGSAARAMKTMGLSQLVLVDPVQP-PDEKSTALAAGANDILANLRIVPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAI+D + +AR+R +L P++A L + + + V ++FGRER GLTNEE Sbjct: 67 LAEAISDCSLVIGASARSRTLAWPMLDPRQAGQQLADGALN-KTVALVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELLS 194 + + ++ P NP + SLN++ AV + +E + + E V ++N + + Sbjct: 126 LQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIRMSWLAQQETVVSPADENEYPPQASMEL 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE +L + + M+ L +F R E+ +LRGI++++ K SR S Sbjct: 186 FYTHLEETLRQTQFLHSDHPGHVMM-RLRRMFTRLRPDNNELNILRGILTSVQKSSRNS 243 >gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 240 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 136/245 (55%), Gaps = 13/245 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +QN + I+LV+ NIG ARAM N L L LV P++ +PS++A S ++ A + Sbjct: 1 MQNKVR---IVLVNTSHPGNIGGAARAMKNMGLADLYLVAPKE-YPSDEAVSRASGATDI 56 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126 +D+ + + L+EA+AD + T+AR RN ++ P++AA +V +E G +FG Sbjct: 57 LDNAVIVNTLEEALADCQLVIGTSARERNIPWPLVDPRQAADLVFDE----GLVTAFVFG 112 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQN 184 RE GLTNEE+ N + P F SLN+ AV ++ +E +++ + V + + Sbjct: 113 REDRGLTNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELRMKTLLMKDAPVVASKWD 172 Query: 185 TPATKGELLSF-LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 PA E + + L++LE L + + P E +++ +F R L ++EV +LRG++ Sbjct: 173 VPAANIEQIDYLLEHLEKVLVQTEFLDP-EMPMQVMTRFRRMFQRSRLDQQEVGMLRGML 231 Query: 244 STLDK 248 ++++K Sbjct: 232 TSMEK 236 >gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12] gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12] Length = 251 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 3/241 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L L LV+P+ +P KAR +A AD ++++ V Sbjct: 8 VVLVATSHPGNIGSTARAMKTMGLNSLYLVSPKS-FPDYKAREMAAGADDLLETAVVTET 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ I AT+AR R L P +A +++++ S Q + I+FGRE GLTNEE Sbjct: 67 LDEALVGCQLILATSARPRGLSLPGLIPSSSAELVSKQAESTQ-IAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I P NP + SLN++QAV ++ +E + + + AT E+ F Sbjct: 126 LLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELRMKLLAPKAEVALRSDEYATADEIEQFY 185 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++L+ E + R ++++ + +F R L + EV +LRG++S + K +S+R Sbjct: 186 EHLKEVFIEIKFLREA-NPRRLMQRVRRLFNRVNLEKMEVSILRGMLSQVQKSLEWASKR 244 Query: 257 N 257 Sbjct: 245 G 245 >gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 242 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 132/231 (57%), Gaps = 14/231 (6%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 L NIG ARAM L+ LRLV P + E+A++ SA A V+ + ++F + ++AIAD Sbjct: 16 LPANIGSAARAMKTMGLSNLRLVAPLNPI-DEQAQALSAGARDVLANAQIFDSFEQAIAD 74 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + T+AR R+ S++ P++ + ER G+ V I+FGRER GLTNEE+ + Sbjct: 75 CQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEELLKCHYH 133 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGELLSFLD 197 ++FP NP + SLN++ AV L +E + + + +KN V+E++ P T+ L F + Sbjct: 134 LNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA-LEHFFN 191 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E ++ + R ++ L ++ R EL E+ LLRG++++++K Sbjct: 192 HTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] Length = 271 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 10 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 69 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 128 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183 +AL+N ++ PVN + LN++QA+ ++ +E +E V+S+ ++++ Sbjct: 129 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 188 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 189 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 247 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 248 SRVQALTSGKWKKASSDKED 267 >gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] Length = 279 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183 +AL+N ++ PVN + LN++QA+ ++ +E +E V+S+ ++++ Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 256 SRVQALTSGKWKKASSDKED 275 >gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] Length = 253 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 5/231 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR M N L +L LVNPR S++A+ + + +++ +++ ++ Sbjct: 11 IILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDILEQLQLVNS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ ATT+R R + P++A L + SG +IFG E GL+NEE Sbjct: 71 LPQALTGCQRAIATTSRMRTLPTVLETPRDALPWL---LDSGVKGALIFGPEDRGLSNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP +PSLN++QAV + V+E + ++ K K ++ A+ +L + Sbjct: 128 LNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKR-KSEDESASLEDLERYY 186 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 LE L + GY P +M + ++ + L REE+ +LRGI+ ++ Sbjct: 187 QDLETLLLKIGYLYPHTASARM-EKFRRMYYKANLNREELAMLRGILRQMN 236 >gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB900] gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB056] gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB058] gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB059] gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] Length = 279 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183 +AL+N ++ PVN + LN++QA+ ++ +E +E V+S+ ++++ Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 256 SRVQALTSGKWKKASSDKED 275 >gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] Length = 244 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +AIA + T+AR+R +L P+E + + G++ V ++FGRER GLTN Sbjct: 66 LDDAIAGCSLVVGTSARSRTLPWPMLEPRECGV---RAVHEGEHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTP-ATKGEL 192 +E+ + ++ P NP + SLN++ AV ++ +E + + V + + TP +L Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQVGVPQLEETPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L+ G+ RP + M L +F R +E+ +LRG++++++K + Sbjct: 183 ERFYQHLEQTLQHSGFIRPAHPGQVM-SRLRRLFTRARPEAQELNILRGMLTSIEKQDKH 241 Query: 253 SS 254 Sbjct: 242 QG 243 >gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] Length = 279 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 77 LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183 +AL+N ++ PVN + LN++QA+ ++ +E +E V+S+ ++++ Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKVLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 256 SRVQALTSGKWKKASSDKED 275 >gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1] gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1] Length = 279 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 15/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 +AL+N ++ PVNP + LN++QA+ ++ +E +++ + + P +G+ + Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEQVDQNVDEMPLVQGQSMQWD 196 Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 STLDKFS 250 S + + Sbjct: 256 SRVQALT 262 >gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] Length = 249 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 132/243 (54%), Gaps = 6/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG VARAM L++L LV+P + S A + +A A V+ + V + Sbjct: 8 VVLVNTSHTGNIGSVARAMKTMGLSKLYLVDPVNQIDSH-ASALAAGATDVLGNAVVVDD 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIAD + T+AR+R ++ P+E +L + G V ++FGRE GL+NEE Sbjct: 67 LAQAIADCSLVIGTSARSRTLSWPMVEPRECGQMLVDGAKKGP-VALVFGRENSGLSNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194 + + + + P NP + SLN++ AV + +E + EK V+ T P+++ +L Sbjct: 126 LQMCHYHVCIPANPEYSSLNLAMAVQTLTYEVRMAFLQQQEKKVEVDETVYPSSQ-QLEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 F +L+ +LE G+ + ++ L +F R E+ +LRGI++++DK Q++ Sbjct: 185 FYQHLQNTLENTGFIIK-QHPGLVMTKLRRLFNRARPEDGELNILRGILTSVDKLDSQAT 243 Query: 255 RRN 257 + N Sbjct: 244 KNN 246 >gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] Length = 256 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + ENIGM ARA N + L LV+P + + ++A+A +++SVRV Sbjct: 7 VVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRVTHG 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD H ++ TTAR KS++ P EA + + G+ V ++FG E GL NEE Sbjct: 67 LAAALADAHVVFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLENEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELL 193 I + +++ P SLN++QAVL++++EC S ++ V E++ AT E Sbjct: 127 IQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQSQPAGHAAHDQVAERH--ATHAEQE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + + ++ +L + +P + L + F + +L R E +L GI Sbjct: 185 ALMANIQETLSAIDFLKP-QNPDYWLLPVRRFFAKLDLRRSEFNMLMGIC 233 >gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 Length = 244 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 131/238 (55%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARA LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 10 IVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 EA+ D + T+AR R+ +++ P+E A E++ + G+ + I+FGRER GLTN Sbjct: 68 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 123 EELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQNNKKNSLSLIEKNYPTTD- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F DY E + G+ + +K L ++ R +L + E+ +L G +S ++K Sbjct: 182 QLAYFFDYTERIYQSLGFIQNQGVXRK----LKRLYYRAKLEKNELNILNGXLSAVEK 235 >gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] Length = 236 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 14/204 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ EN+GMVARAM N +L LV P S AR + +A+ +++ RV Sbjct: 4 VILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVCET 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + A T R+ L E L E F+G++V ++FGRER GLT+EE Sbjct: 64 LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGRDVALVFGRERTGLTSEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I++ P + PSLN++QAV+++++E M S +S P + +L +L Sbjct: 122 VQACDLILTIPSSGACPSLNLAQAVMVVLYELMRASFLSL--------APRREEDLRPYL 173 Query: 197 DYLEIS----LEERGYFRPVEKKK 216 D + LE+ GY+R + ++K Sbjct: 174 DEAVVRAREVLEKLGYYRNIPEEK 197 >gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 18/254 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ NIG ARA+ ++L LVNPR D ++A + ++ A V+ + R+ Sbjct: 17 VLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQNARIVG 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++EA+ +F A +AR R V++P+E A L+ +G N ++FG ER+GL NE Sbjct: 77 SVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRD--TGLNAALLFGNERFGLPNE 134 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----------MENSI-VSSEKNVKEQ 183 + NA+++ P NP + SLN+SQAV ++ +EC M+ S S V Sbjct: 135 VVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPGEVGFH 194 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A+ E+ +LE +L + P + KK++ L +F R +L EEV +LRGI Sbjct: 195 GQSASVAEIEGMFAHLEQALVAIDFLNP-DNPKKLMPRLKRMFSRAQLETEEVNILRGIA 253 Query: 244 -STLDKFSRQSSRR 256 L+ ++ RR Sbjct: 254 RQILEPKQAKAGRR 267 >gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 12/244 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 ILV N+G ARA+ +L LV PR + E+A + ++ A V++ + Sbjct: 17 ILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGAQDVLEKAEIVD 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ + F A TAR R VL P++ A VL+++ + ++FG ER+GL N Sbjct: 77 TIDQALENCQFAAAITARLREFSPPVLTPRQFAETVLSDK---KKPCALVFGSERYGLPN 133 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATK 189 E + A+I+ P NP + SLN++QA+ ++ +EC +EN + ++ PA+ Sbjct: 134 EVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVDHIGFHGDPASV 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +LE L G+ P + KK++ L +F R L EEV +LRGI ++K Sbjct: 194 EQINGMFAHLESVLTAIGFLNP-DNPKKLMPRLRRLFSRTGLETEEVNILRGIARQMEKQ 252 Query: 250 SRQS 253 +R S Sbjct: 253 ARYS 256 >gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 290 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA ++ +G ++ ++FG ER GL NE Sbjct: 106 TLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACAQVGTG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKG 190 + +A+ P NP + SLN++QAV ++ +E + + + + E T A Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQQASDAQQPPAGEAGTLAQSD 224 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E+ +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 225 EIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 276 >gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4] gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4] Length = 241 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV NIG ARAM L+ L L PR + ++ +D + V+V S Sbjct: 7 VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE GLTNEE Sbjct: 66 LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSGP-VAIVFGRENHGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + + E+ P + +L F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTAAPQVEEEYPLS-ADLERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234 >gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu] Length = 269 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 28 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 87 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R LAP+ AA ++ +G ++ ++FG ER GL NE Sbjct: 88 TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACAQVGTG-DIALVFGNERTGLANE 146 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E++ S + E T A E Sbjct: 147 HVDQCSALAHIPANPAYSSLNLAQAVQVLAYELRIAFLEHASASLPR--PEAGTLAQSDE 204 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +LE +L + P KK++ L +F R L REEV +LRGI + SR Sbjct: 205 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKSR 263 Query: 252 QSSR 255 R Sbjct: 264 TPDR 267 >gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 260 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 21/250 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ +V ++ Sbjct: 7 IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-AYPSVEATARASGAGDVLEAAQVCNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QN--VGIIFGRERWGLT 133 + EA+ + T+AR R L P++ A L+ + + QN + ++FGRE GLT Sbjct: 66 VDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGREDRGLT 125 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185 N+E+ N +S P NP + LN++ AV L+ +E + +++ + ++E + Sbjct: 126 NDELRRCNLHVSVPTNPEYGVLNVASAVQLISYE-LRLALLGDDFELQESRSRREVMPLP 184 Query: 186 -------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 PAT + FLD+LE + + G+ P E+ +++ + +F+R + E+ + Sbjct: 185 EMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-EQPGQVMTRMRRLFMRARPDKMEMSI 243 Query: 239 LRGIVSTLDK 248 LRG++ L+K Sbjct: 244 LRGVLVALEK 253 >gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 ILV+ NIG ARA+ N T+L LVNPR D E+A + ++ A ++ + R+ Sbjct: 17 ILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDILQAARIVG 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++EA+ D +F A TAR R V++P+ A L E +G ++FG ER+GL NE Sbjct: 77 SIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEE--TGLRAAVVFGNERFGLPNE 134 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELL 193 + N +I+ NP + SLN++QAV ++ +E ++ + ++ Q A+ ++ Sbjct: 135 IVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATDIGFQGEAASMAQID 194 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +LE +L + KK++ L +F R +L EEV +LRGI + Sbjct: 195 GMYAHLEQALVAIDFL-DANNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 246 >gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 279 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 17/248 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQ---------- 183 +AL+N ++ PVNP + LN++QA+ ++ +E + S + EK NV E Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYE-LRMSALEQEKVDQNVDEMPLVQGQSMQW 195 Query: 184 NTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + P T+ ++ F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 196 DEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGI 254 Query: 243 VSTLDKFS 250 S + + Sbjct: 255 FSRVQALT 262 >gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 244 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 4/235 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL L P+ P ++ + +A A ++ ++ V + Sbjct: 7 IVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVA-PDGQSIALAAGASDLLKNLVVTDD 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L AIAD + T+AR+R +L +EA + L +G V ++FGRE GL+NEE Sbjct: 66 LASAIADCSLVIGTSARSRTLSWPMLDAREAGVKLASEANTGP-VALVFGRENSGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLSF 195 + + + + P NP + SLN++QAV L+ +E + +E+ E T+G++ Sbjct: 125 LQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQTEQPSPEAEVEYPTQGQMEGL 184 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LE +L G+ + M + L +F R + E+ +LRG+++++DK + Sbjct: 185 YQHLEQTLSHTGFIIKAHPGQVM-NKLRRLFNRARPEQTELAILRGVLTSVDKTT 238 >gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624] gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624] Length = 279 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 20/260 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV+P+ +P ++ +A A +++ V + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + A+ + GQ + I+FGRE GLTNEE Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 +AL+N ++ PVN + LN++QA+ ++ +E + + E + P +G+ + Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKESVSDDGQMPLAQGQSMQWD 196 Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F +LE L E + P E + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 S-----TLDKFSRQSSRRNN 258 S T K+ + SS + + Sbjct: 256 SRVQALTSGKWKKASSDKED 275 >gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] Length = 241 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 131/240 (54%), Gaps = 16/240 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM N L +L LV P+ +PS++A S ++ A ++++ V Sbjct: 6 IVLVNTSHPGNIGAAARAMKNMGLARLYLVAPK-VFPSDEADSRASGATDILENAVVVDT 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + T+AR R+ ++ P++AA +++E +FGRE GLTNEE Sbjct: 65 LEEAIADCQLVVGTSARERHIPWPLVDPRQAAEMVHEEQLES---AFVFGREDRGLTNEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE-------CMENSIVSSEKNVKEQNTPATK 189 + + + P F SLN+ AV ++ +E + IV+S+ +V AT Sbjct: 122 LQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLALQDAPIVASKWDVP----AATA 177 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L L +LE L + + P + ++++ +F R +L ++EV +LRG+++++DK Sbjct: 178 DQLDHMLTHLESVLSKTEFLDP-KAPRQVMTRFRRLFQRAQLDQQEVGMLRGMLTSVDKL 236 >gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT+L LV+P+ P + A + +A A V+ + RV S Sbjct: 7 IVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQT-LPDDSAHALAAGASDVLANARVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIAD + T+AR+R +L P+EA + + G V ++FGRER GLTN Sbjct: 66 LDEAIADCGLVIGTSARSRTLSWPMLDPREAG---EKAVGEGMKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ + ++ P NP + SLN++ AV + +E + V+ + + +L Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVRMCWLQDQAPEVESEADYPSAHQLEG 182 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ + +++ L +F RPE + E+ +LRGI++++ K Sbjct: 183 FYQHLEQTLLKTGFIAD-DHPGQVMSKLRRLFNRARPEAI--ELNILRGILTSIQK 235 >gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda FL6-60] Length = 235 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 3/152 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P EN+G ARAM T LR+V+ + DG P+ AR + A ++D R F Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSKADGEPA--ARWVAHGAGDILDGARHFD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD+ F A+TAR+R F P+E VL E+ + ++FGRE GLTN+ Sbjct: 63 TLAQALADVDFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL + + P+ +PSLN+ QAV++ ++ Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ 154 >gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] Length = 267 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 10/256 (3%) Query: 2 TPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 +P PQ + GP I+LV Q NIG ARAM L++L LV+P + A Sbjct: 4 SPIQPQ-HAAGPGPGDIRIVLVGTQHPGNIGAAARAMKTMGLSRLVLVSPEKPL-DDTAY 61 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 SA A+ V+DS V++ L EA+AD + TAR+R L P AA + G Sbjct: 62 RRSAGAEDVLDSAPVYATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAEG 121 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVS 175 V ++FGRER GLTNEE+ L +A + P +P F SLN++ AV ++ +E + + + Sbjct: 122 -PVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELRLAVLAADPA 180 Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + PA+ ++ F L +L++ + + M L +F+R L E Sbjct: 181 PAEPPPPDAQPASHEQVEGFFAQLADTLDDIDFHKGRSPDSAM-RKLRRLFLRTGLTVHE 239 Query: 236 VFLLRGIVSTLDKFSR 251 V LLRG+++ + +R Sbjct: 240 VRLLRGVLADAQRMAR 255 >gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345] gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana ATCC 700345] Length = 254 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 136/251 (54%), Gaps = 14/251 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P + + +A A ++ S+ Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAITVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GLTNEE Sbjct: 66 VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALNGP-VAIVFGRENNGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENS---IVSSEKNVKEQNTP 186 + + ++ P NP + SLN++QAV ++ +E ++NS ++ +E +++ P Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQNSAEAVIETESEEAQEDFP 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++K E +F ++LE +L + +++ L +F R + R+E+ +LRGI++++ Sbjct: 185 SSK-ERENFFEHLENTLFSTNFIVK-NHPGQIMTKLRRLFSRTRIERQEMNILRGILTSI 242 Query: 247 DKFSRQSSRRN 257 DK +S ++ Sbjct: 243 DKVVAKSETKD 253 >gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] Length = 244 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 131/250 (52%), Gaps = 24/250 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73 ++LV+PQ N+G VARAM NF L +L LVNP R G P + +A + +A+ ++D Sbjct: 10 VVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHAEEILDRAVA 69 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 +L EA+AD+ + ATT R R + + + P A + R+ S + V ++FGRE +GL Sbjct: 70 VDSLMEALADVELVVATTGRPRKLYPAPVVP---AWEVPARVLSVEGEVALVFGRETFGL 126 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----AT 188 TNEE+AL++ I + P P PSLN++QAV++ +E K V E P A Sbjct: 127 TNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELF--------KAVGEGRFPREELAQ 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L +F + L + E G F + + L IF + L EV +LRG++ Sbjct: 179 VAALEAFFEDLGRYVLEIG-FTDQNRFPHAMRRLRRIFHKARLTPGEVQMLRGLLHQ--- 234 Query: 249 FSRQSSRRNN 258 SR R+ + Sbjct: 235 -SRYQMRKKD 243 >gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 271 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 15/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + + Sbjct: 10 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE Sbjct: 69 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGREDRGLTNEE 128 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 +AL+N ++ PVNP + LN++QA+ ++ +E +++ + + + P +G+ + Sbjct: 129 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQEVDEMPLVQGQSMQWD 188 Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F +LE L E + P + + + L +F R +L R E LLRGI Sbjct: 189 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 247 Query: 244 STLDKFS 250 S + + Sbjct: 248 SRVQALT 254 >gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 268 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P L NIG ARAM LT+L LVNPR +P +A + ++ A V+ V + Sbjct: 25 VVLARPSLPANIGSAARAMKTMGLTRLYLVNPRR-FPDPEADTLASGAVDVLQQAVVTGS 83 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + A T+R R + AP+ A L + GQ V ++FG E +GL+ EE Sbjct: 84 LGEALDGVALACALTSRKREITTPLAAPRIACAELLDAARQGQQVALVFGNETFGLSIEE 143 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 N +++ NP + SLN++QAV +M +E + + +++ Q A++ E+ Sbjct: 144 AGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELF-SQLDFPLDHLRFQTERASRDEVEGLY 202 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L+ +L G++ ++++ L ++F R +L R+E+ +LRGI+ +++ Sbjct: 203 GHLDHTLSGIGFYE-RRNSERLMRRLRTLFDRADLERQEIDILRGILKQVER 253 >gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] Length = 243 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 13/243 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM L+ L LVNP+ P A + SA A VI + + ++ Sbjct: 7 IILVETSHTGNMGSTARAMKTMGLSNLYLVNPQV-QPDSHAIALSAGASDVIGNATIVNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ + T+AR+R ++AP+E + + + V IIFGRER GLTN Sbjct: 66 LDEALEGCKLVIGTSARSRTLSWPMVAPRECG---EKSVMQAKTAPVAIIFGRERIGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATK 189 EE+ + P NP + SLN++ AV L+ +E + EKN E P + Sbjct: 123 EELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLALEEKNAVNSEEDEVEYPPVE 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ F +LE L E G+ R +++ L ++ R + +E+ +LRGI+++++K+ Sbjct: 183 -DIERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLYTRAHIETQELHILRGILTSMEKW 240 Query: 250 SRQ 252 +++ Sbjct: 241 AKK 243 >gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568] gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +AIA + T+AR+R +L P+E I + G++ V ++FGRER GLTN Sbjct: 66 LDDAIAGCSLVVGTSARSRTLPWPMLEPRECGI---RAVHEGEHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTP-ATKGEL 192 +E+ + ++ P NP + SLN++ AV ++ +E + + + + TP +L Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQAGAPQLEETPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K + Sbjct: 183 ERFYQHLEQTLQHSGFIRP-SHPGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDKH 241 Query: 253 SS 254 Sbjct: 242 QG 243 >gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164] gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164] Length = 280 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 27/262 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L +L LV PR +P + + +A A +I+ +++ Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLCRLILVAPR-TYPHQDIDALAAGAQDLIEQIQIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 L+EAI D H ++ T+AR+R +L + AA + + S Q + I+FGRE GLTNE Sbjct: 77 LEEAIQDCHLVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDRGLTNE 136 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL+N ++ PVN + LN++QA+ ++ +E ++ + +E N G+ S Sbjct: 137 ELALANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLELVDTPPQETNQMPVTGK--SM 194 Query: 196 LDYLE--ISLEERGYFRPVEKKKKMLDDLYSIFIRP-----------------ELMREEV 236 +D+ E ++ E+ F P +KML+++ F+ P +L R E Sbjct: 195 MDWDEPLVTHEQMEQFYP--HLEKMLEEIE--FLDPNNKRLLPLRLRRLFGRIQLDRMEY 250 Query: 237 FLLRGIVSTLDKFSRQSSRRNN 258 LLRGI S + + + +++N Sbjct: 251 HLLRGIFSRVQALNNGTWKKSN 272 >gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 331] gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 11/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S RV + Sbjct: 7 IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ + ++ T+AR+R + +E A + + N+ I+FGRER GLTNEE Sbjct: 66 LTAALEGCNLVFGTSARSRTLPWPLKTARECA---EQSVQHQGNIAIVFGRERSGLTNEE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 +A ++ P F SLN++QAV ++ +E + + + + QNTP AT ++ Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDP--RHQNTPIQQLATADQM 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + + P ++ K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4] gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica PV-4] Length = 252 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P ++ + +A A ++ Sbjct: 7 VVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVA-PDGQSVALAAGASDILKHAVTVDC 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AIAD + AT+AR+R +L P++A L +G V I+FGRE GL+N+E Sbjct: 66 LEDAIADCSLVIATSARSRTLDWPMLDPRQAGEKLAGAAVNGP-VAIVFGRESNGLSNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + N ++ P NP + SLN++QAV ++ +E + + V+EQ P K E +F Sbjct: 125 LQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAK-EQENFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ + +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLEKTLLSTGFIIK-QHPGQVMTKLRRLFSRARIESQEMNILRGILTSVDK 234 >gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] Length = 248 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 13/235 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVF 74 +ILV+PQ N+GMV RAM N L +LR+V G P + +A + +A +++ RVF Sbjct: 11 VILVEPQSPGNVGMVCRAMKNMGLAELRIVK---GCPLDHPEAYKFAVSAKDLLEGARVF 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGL 132 +L+EA+AD ATT R+ + + +P E A IV N +G ++FGRE GL Sbjct: 68 PSLEEALADTELSVATTRRHGKYRQEIYSPGEIAGKIVTN---LAGNRAALVFGREDSGL 124 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T +E++L + P + + SLN++QAVL+ +E + E T A Sbjct: 125 TTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYELFAG--LGEGTVAGEARTLAGSAAQ 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + +E +L G+ P + ++ + IF R EL EV +LRG+++ +D Sbjct: 183 EALFGQMERTLLRIGFLNP-QNPDHIMRTVRRIFSRAELDDREVAILRGMMTQID 236 >gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 241 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAI+ + T+AR+R+ +L P+E I + + GQ+ V ++FGRER GLTN Sbjct: 66 LDEAISGCSLVVGTSARSRSLPWPMLDPRECGI---KSVEEGQHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E S+ + + + P + Sbjct: 123 EELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQSVEAPQAQCDDSPYPLVD-D 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++E + + G+ R + M + +F R R+E+ +LRG++S+L+K Sbjct: 182 LERFYQHMEKMMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 21/243 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + GQ+ V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191 +E+ + ++ NP + SLN++ AV ++ +E + + +EQ PA + E Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAA-----QEQAQPAVEHEEAP 177 Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F D+LE +L G+ RP ++++ L +F R +E+ +LRG++++ Sbjct: 178 YPLVDDLERFYDHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236 Query: 246 LDK 248 +++ Sbjct: 237 IEQ 239 >gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 244 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 21/243 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + GQ+ V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191 +E+ + ++ NP + SLN++ AV ++ +E + + +EQ PA + E Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAA-----QEQAQPAVEHEEAP 177 Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F D+LE +L G+ RP ++++ L +F R +E+ +LRG++++ Sbjct: 178 YPLVDDLERFYDHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236 Query: 246 LDK 248 +++ Sbjct: 237 IEQ 239 >gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena XCL-2] gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira crunogena XCL-2] Length = 268 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ NIG VARAM N L+QL LVNP+D +PS+ A + ++ A V++ +V Sbjct: 16 IVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKD-FPSQVASARASGAADVLNDAKVVET 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----NVGIIFGRERWG 131 L++A+AD + +AR R L ++ A + E + GQ V I+FGRE G Sbjct: 75 LEQAVADCKLVVGASARLRKVSWPQLDVRQTAELAMETV--GQEDEDNQVAILFGREDSG 132 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKG 190 L+N E+ + + P NP + SLNI+ AV + V+E M I S + ++ A+ Sbjct: 133 LSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYELLMATDIKSVHEAEGYRHKLASSD 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ F D+L +L++ + P K + + + +F R +L +E+ +LRG+++ + + Sbjct: 193 QMEGFYDHLYQALQDIEFLDPT-KNARFMRRMRRLFNRSQLDVKEIDILRGVLTAAQRQT 251 Query: 251 RQ-SSRRNNVLLQKTE 265 +Q + R L K E Sbjct: 252 KQLDTYRQQASLSKEE 267 >gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 12/246 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV+PQ NIG V RAM NF + LRLVNP+ ++AR + A V++S ++S Sbjct: 15 AIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAVKAGYVLESATIYS 74 Query: 76 NLKEAIADLHFIYATT-----ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L+EA+ + + TT R+R++F L P AA ++ + ++FGRE Sbjct: 75 SLEEALHGCQYAFGTTRRFGRYRDRDDF---LYPDAAAQMI-AGFDHDTHTALVFGREDC 130 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL NEE+ L ++ P PS+N++Q+V L ++E + + + + +K + Sbjct: 131 GLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQGLEARGELLKPNLAEIDQT 190 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E S L +++ +L Y P + +L +F + L +V +LRG+ S +D+ Sbjct: 191 E--SMLQHMKETLTRIDYLDP-QNPDHILRSFRRLFGKNGLTDRDVRILRGLWSRIDRVQ 247 Query: 251 RQSSRR 256 + +R Sbjct: 248 LELEKR 253 >gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] Length = 244 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 16/245 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM L+ L LVNP P A + SA A VI + + + Sbjct: 7 IILVETSHTGNMGSAARAMKTMGLSNLYLVNPLV-QPDSNAIALSAGASDVIGNATIVNT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L EA+A + T+AR+R ++ P+E ER N V I+FGRER GLT Sbjct: 66 LDEALAGCELVIGTSARSRTLPWPMVEPRECG----ERCVKASNHSPVAIVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK------EQNTPA 187 NEE+ + + P NP + SLN++ AV L+ +E + EK+ K E P Sbjct: 122 NEELQKCHYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAFQEKSEKTVSPEHETEYPP 181 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + ++ F + E L E G+ R V ++++ L ++ R +E+ +LRGI+++++ Sbjct: 182 IE-DMERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSME 239 Query: 248 KFSRQ 252 K++++ Sbjct: 240 KWAKK 244 >gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] Length = 262 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 20/241 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR M N L QL LVNP + +AR + + V++S + + Sbjct: 8 IILVEPAGALNVGSVARVMKNMGLNQLWLVNPHCNPRASEARQMAVHGVEVLESAQQVAT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI--VLNERIFSGQNVGIIFGRERWGLTN 134 L EA+ ATTAR R + + L P A+ +L E I S +IFG E GL+N Sbjct: 68 LPEALEGCQRAIATTARTR-HLPTTLEPPRLALPWLLAENITS----ALIFGPEDRGLSN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------KNVKE 182 +E+ + + P NP +PSLN++QAV + +E + + +SS+ + Sbjct: 123 DELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQLTSLSSQTRHSTSLQAPQTHHGTS 182 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 +T A+ + ++ +LE L + GY P +M + ++ R L E+V +LRGI Sbjct: 183 LHTTASLDAIEAYFQHLEAVLLKIGYLHPHTATSRM-EKFRRLYYRAMLTPEDVAMLRGI 241 Query: 243 V 243 + Sbjct: 242 L 242 >gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8] gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 244 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 16/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73 I+LV+PQ N+G VARAM NF L++L +VNP R G P +++A + +A+ V++ +V Sbjct: 6 IVLVEPQEPMNLGAVARAMRNFGLSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVLEKAQV 65 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWG 131 +L EA+ + ATT R R + + +AP A + +R+ F G+ V ++FGRE +G Sbjct: 66 AGSLLEALRGAQLVVATTGRPREVYPAPVAP---AWEVADRVAAFPGE-VALVFGRETFG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ L++ I P P PSLN++QAV++ +E + ++E PA Sbjct: 122 LTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQ--GKGVGLREGGEPAPVEA 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +F L + E G F + + L IF + L EV +LRG++ SR Sbjct: 180 LEAFFQDLGRYILEIG-FTDERRFPYAMRRLRRIFHKAGLTLGEVQMLRGLLHQ----SR 234 Query: 252 QSSRRNN 258 + RR + Sbjct: 235 FAQRRKD 241 >gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] Length = 273 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 18/258 (6%) Query: 1 MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 WPSE--KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 + +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E + Sbjct: 125 QACTQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYE-L 182 Query: 170 ENSIVSSEKNVKEQ----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 + + ++E T A E+ +LE +L + P KK++ L + Sbjct: 183 RVAFLEQGSELREAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRL 241 Query: 226 FIRPELMREEVFLLRGIV 243 F R L REEV +LRGI Sbjct: 242 FARTGLEREEVNILRGIA 259 >gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 228 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 5/189 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM TQLR+V+ + + D +ID++ VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGD-IIDNINVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L E+ ++ ++FGRE GLTNEE Sbjct: 64 LADALHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATKGELL 193 +AL++ + P+ +PSLN+ QAV++ ++ + I KNV+ E A + +L Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ-LAGLIQQPAKNVEVTDELQLQALRARVL 182 Query: 194 SFLDYLEIS 202 L L +S Sbjct: 183 RLLATLNVS 191 >gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 236 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 6/200 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ EN+GMVARAM N +L LV P S A+ + +A+ +++ RV Sbjct: 4 VILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVCET 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + A T R+ L E L E F+G+ V ++FGRER GLT+EE Sbjct: 64 LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGREVALVFGRERTGLTSEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I++ P + PSLN++QAV+++++E M S +S N +E P + ++ Sbjct: 122 VQACDLILTIPSSGSCPSLNLAQAVMVVLYELMRASFLSLAPNREEDLRPYLEEAVVRAR 181 Query: 197 DYLEISLEERGYFRPVEKKK 216 + LE+ GY+R + ++K Sbjct: 182 EV----LEKLGYYRNIPEEK 197 >gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus Ueda107] Length = 286 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 17/253 (6%) Query: 8 LQNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + N+A P I+LV+ NIG ARAM N L +L LV P++ +PS+KA +A Sbjct: 1 MSNAANAPFANIRIVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKE-YPSDKAVWRAAG 59 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQN- 120 A V+D+ V L EAIA + T+AR R +L P++ E I++ G++ Sbjct: 60 ATDVLDNAVVVETLDEAIAGCSLVVGTSARERRIPWPLLDPRQCG----ESIWAEAGEHE 115 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178 V ++FGRE GLTNEE+ + P N + SLN++ AV ++ +E + + E Sbjct: 116 VAVVFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIRMAYLQAVEGKS 175 Query: 179 --NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 N PA G L ++ +LE +L + G+ P + K+ + L ++ R L + E+ Sbjct: 176 LPNHHWDMPPADAGALENYYQHLEQALVDLGFLDP-DNPKQTMTRLRRLYNRVRLDQMEL 234 Query: 237 FLLRGIVSTLDKF 249 +LRG+++ + + Sbjct: 235 NILRGVLTAMQNY 247 >gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 287 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 20/256 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N L L LVNP +P E + + +A A V+DS V S+ Sbjct: 20 IVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-SSFPDEASYARAAGASDVLDSAHVVSS 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD + T+AR R V AP EAA E SG V ++FGRE GL+N+E Sbjct: 79 LDEALADCVLVMGTSARGRKVPWPVCAPPEAAAAAAEHAGSGP-VAMVFGRENHGLSNDE 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKG- 190 + + I P NP + SLN++ AV +M +E + S E +K P +G Sbjct: 138 LQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLRSLEGGEGSPYLKSMTRPGDEGW 197 Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ F +LE L + + R E ++++ L +F R L + E+ +LRGI Sbjct: 198 DVPPAKVHDVEGFFGHLEQVLIDVDFHR-RENPRQLMTRLRRLFQRARLDQMEINILRGI 256 Query: 243 VSTLDKFSRQSSRRNN 258 ++ + K + RNN Sbjct: 257 LTAVQK---AAGTRNN 269 >gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 I+LV + ENIGM ARA N + L LV+P + W EKAR ++ ++D V+V++ Sbjct: 10 IVLVKTRFPENIGMAARACVNMGCSSLSLVDP-ERWDKEKARPLATPKGQDLLDDVKVYA 68 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+A + + TTAR +S+L+P AA + E + G+ V ++FG E GL NE Sbjct: 69 DLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDRGLNNE 128 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 EI + +++ P +P SLN++QAVLL+++EC + Sbjct: 129 EITHCHKLVTIPTDPAASSLNLAQAVLLLLYECAD 163 >gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 278 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 21/268 (7%) Query: 9 QNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 QN+ P+ I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 6 QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I+ + + L++AI D H ++ T+AR+R +L + AA QN+ I+ Sbjct: 65 QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIV 124 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VS 175 FGRE GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E ++ + Sbjct: 125 FGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTTN 184 Query: 176 SEKNVKEQNTP------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 + +K+Q T T+ ++ F + E L E + P + + + L +F R Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDP-DNPRLLPLRLRRLFGRI 243 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRN 257 +L R E LLRG+ S + + S +++ Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKS 271 >gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 261 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 21/250 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ +V ++ Sbjct: 7 IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQS-YPSVEATARASGAGDVLEAAQVCNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133 + EA+ + T+AR R L P++ A L+ + + + ++FGRE GLT Sbjct: 66 VDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGREDRGLT 125 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185 N+E+ N +S P NP + LN++ AV L+ +E + +++ + ++E + Sbjct: 126 NDELRRCNLHVSVPANPEYGVLNVASAVQLISYE-LRLALLGDDFELQESRSRREVMPLP 184 Query: 186 -------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 PAT + FLD+LE + + G+ P ++ +++ + +F+R + E+ + Sbjct: 185 EMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-QQPGQVMTRMRRLFMRARPDKMEMSI 243 Query: 239 LRGIVSTLDK 248 LRG++ L+K Sbjct: 244 LRGVLVALEK 253 >gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 11/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S RV + Sbjct: 7 IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ + ++ T+AR+R + +E A + + N+ I+FGRER GLTNEE Sbjct: 66 LTAALEGCNLVFGTSARSRTLPWLLKTARECA---EQSVQHQGNIAIVFGRERSGLTNEE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192 +A ++ P F SLN++QAV ++ +E + + + + QNTP AT ++ Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDP--RHQNTPIQQLATADQM 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + + P ++ K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] Length = 256 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR M N L +L LVNP+ S++AR + + +++ ++ ++ Sbjct: 11 IILVEPAGALNVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDILEQLQQVNS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ ATT R+R +P+ A L + IIFG E GL+N E Sbjct: 71 LPQALVGCQRAIATTGRSRTLPTHFESPRAALPWL---LTPHSTSAIIFGPEDRGLSNSE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194 + + + P NP +PSLN++QAV + +E + ++ +S + E N+ AT L + Sbjct: 128 LNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQAALTTSASEL-EVNSLETATLDALEA 186 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + LE L + GY P + +M + + ++ + L +EE+ +LRGIV +D Sbjct: 187 YYQDLETLLLKIGYLYPHTARARM-EKIRRLYYKAHLHQEELAMLRGIVRQMD 238 >gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 245 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+ L LVNP P +A S SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E + + V ++FGRER GLTNEE Sbjct: 66 LDEALAGCSLVIGTSARSRTLPWPMLEPRECG-EHSAKAAQTAPVALVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTP-ATKGEL 192 + N + P NP + SLN++ AV ++ +E + +++ ++ + TP +L Sbjct: 125 LQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLALLEAAKPQIEYEETPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L E G+ R + M L +F R +E+ +LRGI+++++K Sbjct: 185 ERFYQHLEKTLLETGFIRQAHPGQVM-SKLRRLFTRARPESQELNILRGILTSIEK 239 >gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis MR-1] Length = 241 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV NIG ARAM L+ L L PR + ++ +D + V+V S Sbjct: 7 VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GLTNEE Sbjct: 66 LQEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTEGITGP-VAIVFGRENHGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + E + P + +L F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQMEAPQAVEEYPLS-ADLERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRMFSRARIESQEMNILRGILTSIDK 234 >gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] Length = 257 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 7/254 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCNLVIGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192 + + ++ P NP + SLN++ AV ++ +E ++ + + +E+ +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQAAITPLSEEEEAPYPLIDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L + G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYQHLEQVLSQTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243 Query: 253 SSRRNNVLLQKTEK 266 NN ++K ++ Sbjct: 244 QKSANNAHMKKDKE 257 >gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105] gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105] Length = 269 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 12/239 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 I+LV N+G VARAM L LRLV P+ D +E+A S ++ A V++ R++ Sbjct: 12 IVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVLEQARIY 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD +A +AR R+ S+ +P+EAA SG +FG ER GL+N Sbjct: 72 NTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAERTGLSN 131 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV------WECMENSIV---SSEKNVKEQNT 185 +E+ + N ++ NP++ SLN+SQAV ++ W E ++ S +V++ Sbjct: 132 DELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALRTEWAAGEFAVTDQGSLADSVRQGGK 191 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT + + ++E + P +K KK++ L + + L +EEV +LRG S Sbjct: 192 LATVKAVADLQAHWLEAMEAVDFLNP-DKPKKVVQRLARMLAKTPLEQEEVDMLRGFFS 249 >gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 256 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV Q N+G ARA+ L +L LV P E+A SA A+ V+ V + Sbjct: 12 FVLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVAT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD + TAR R P +AA + G V ++FGRER GLTNEE Sbjct: 71 LAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191 + L +A + P +P F SLN++ AV ++ +E +E +EQ A+ + Sbjct: 131 LQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA--ASHEQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + SF L +L+E + + + M L +F+R E +EV LLRGI++ + +R Sbjct: 189 MESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMAR 247 >gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 239 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 134/242 (55%), Gaps = 16/242 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM N L++L LV+P+ +PSE+A S ++ A ++DS V Sbjct: 7 IVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPK-VFPSEEAVSRASGASDLLDSAVVVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI+D + T+AR R+ +L P+E+A + + G +FGRE GLTNEE Sbjct: 66 LEEAISDCQLVIGTSARERHIPWPLLDPRESAELTYK---EGLETAFVFGREDRGLTNEE 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-------ENSIVSSEKNVKEQNTPATK 189 + + + P F SLN++ AV ++ +E ++ IV S+ +V AT Sbjct: 123 LQRCHYHVHIPSVEAFSSLNLATAVQVIAYELRMKLLSLGDSPIVQSKWDVP----AATS 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ L++LE L E + P + ++++ ++ R ++ ++E+ +LRG+++ ++K Sbjct: 179 EQMDHMLEHLENVLGEIEFLDP-KAPRQVMTRFRRLYQRAQMDQQEMGMLRGVLTAIEKQ 237 Query: 250 SR 251 R Sbjct: 238 CR 239 >gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908] gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC 51908] Length = 254 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 12/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P + + +A A ++ + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGHSVALAAGASDILKHAVTVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GLTNEE Sbjct: 66 VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVSSALTGP-VAIVFGRENNGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187 + N ++ P NP + SLN++QAV ++ +E + +++ V+ +N Sbjct: 125 LQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPADYVEPENEYP 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E +F +LE +L G+ + +++ L +F R L ++E+ +LRG+++++D Sbjct: 185 FASERENFFTHLEKTLLNTGFIVK-QHPGQVMTKLRRLFSRARLEKQEMNILRGMLTSID 243 Query: 248 K 248 K Sbjct: 244 K 244 >gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp. PRwf-1] Length = 286 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 1/186 (0%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 ++P L+ I++V+ L NIG ARAM LT L +VNP+ E + + +A Sbjct: 19 HSPDLRQRLNSVRIVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKHPI-DEDSIAHAAG 77 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A V+ RV L EA++D ++A ++R R+ + V+ P EAA ++ +R V I Sbjct: 78 AQSVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGETKVAI 137 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FGRE GLTNEE+AL++ I NP +P LN++ AV ++ + S + + Sbjct: 138 LFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVIASFFYSRFLQHSHSKLNQT 197 Query: 184 NTPATK 189 N A K Sbjct: 198 NDTADK 203 >gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 9/246 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q N+G ARA+ L +L LV P E+A SA A+ V+ V + L Sbjct: 13 VLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVATL 71 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R P +AA + G V ++FGRER GLTNEE+ Sbjct: 72 AEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEEL 131 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGEL 192 L +A + P +P F SLN++ AV ++ +E +V S V+E A+ ++ Sbjct: 132 QLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPVVESGTGVRE--PVASHEQM 189 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 SF L +L+E + + + M L +F+R E +EV LLRGI++ + +R Sbjct: 190 ESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMARL 248 Query: 253 SSRRNN 258 + N Sbjct: 249 AQAGNK 254 >gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 243 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 6/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+ NIG ARAM N +L+ L LVNP+ G+PS A + ++ AD V+ + V + Sbjct: 10 VVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPK-GYPSAIATARASGADDVLSNAVVCES 68 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 LKEA+ ++ + +AR RN ++ + + + + Q V +IFG ER GLTNE Sbjct: 69 LKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGLTNE 128 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELLS 194 E+ L +++ P N + SLN++ A+ + ++ + N+ + +K+ N A EL + Sbjct: 129 ELDLCQILMTIPGNSHYFSLNVASAIQVFAYQNYVYNTTIEFKKST---NKLANFDELEN 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +L LE YF K ++ L F R +EEV + RGI + F + Sbjct: 186 FYAHLAQVLEYIEYFEDKRPKALLMRRLRRFFTRAMPEKEEVAIFRGIFRNIKPFKK 242 >gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] Length = 241 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 EAIA + T+AR+R +L P+E + + G+ V ++FGRER GLTN Sbjct: 66 FDEAIAGCSLVVGTSARSRTLPWPMLEPRECGV---RAVQEGEQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKG 190 +E+ + ++ P NP + SLN++ AV ++ ++ +E + +E P Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVRVAYLERQQADAPPAPQEAAYPLVD- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ RP + M L +F R +E+ +LRG+++++DK Sbjct: 182 DLERFYQHLEQTLSTTGFIRPTHPGQVM-SRLRRLFTRARPEAQELNILRGMLTSIDK 238 >gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont] Length = 228 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM ++LR+V D W AR + A ++D V+ + Sbjct: 5 LILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDHVKTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD+ F ATTAR+R F+ P +A +L E+ + ++FGRE GLTNEE Sbjct: 64 LSAALADVDFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + + P+ +PSLN+ QAV++ ++ Sbjct: 124 LEQVDLLTGIPMAQDYPSLNLGQAVMVYCYQ 154 >gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sulfurreducens PCA] gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter sulfurreducens KN400] Length = 255 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+PQ N+GMV RAM N L +LR+V R P +A + +A +++ RVF Sbjct: 17 AIVLVEPQSPGNVGMVCRAMKNMGLGELRIVKGCRLDHP--EALKFAVSARDLLERARVF 74 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++A++D ATT R+ + + +PKE + +G ++FGRE GLT Sbjct: 75 ESLEDALSDTELSVATTRRHGKYRQEIFSPKEIVSKFAANL-AGNRAALVFGREDNGLTT 133 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 +E++L + P + + SLN++QAV++ +E S+ S + V ++ P A E Sbjct: 134 DELSLCRWHATIPSSEEYGSLNLAQAVMVFCYELF-TSLGS--RTVGGEDRPLAGSAETE 190 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +++E +L GY P + ++ L IF R EL EV +LRG+++ +D Sbjct: 191 PLFEHMERTLMRIGYLNP-QNPAHLMRSLRRIFARSELDSREVAILRGMMTQID 243 >gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] Length = 254 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 130/235 (55%), Gaps = 6/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG VARAM L++L LV P + +P ++A + A+ V++S V + Sbjct: 8 IVLVEPSHPGNIGAVARAMKTMGLSRLVLVAP-EQFPDQQATWRAVWANDVLESATVVAT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD F+ T AR+R VL P+ AA + + G+ V I+FGRE GL+N+E Sbjct: 67 LDEAIADCGFVVGTCARDRRLPWPVLDPRRAASEMAAKSRQGE-VAILFGREDNGLSNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 + N ++ P + + SLN++ AV ++ +E + S + ++ N + AT+ + Sbjct: 126 LMRCNLHLAIPTSEAYNSLNLAMAVQIVCYELHMLVVESSLPTQSNAQWDEPLATQENIE 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE ++ + G+ P ++++ L ++ R + E+ +LRGI++ K Sbjct: 186 RFYVHLEETMSQIGFLNPA-APRQLMPRLRRLYNRLGMDEMELNILRGILTETQK 239 >gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 242 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAIALAAGASDVIGEAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R+ +L P+E I + + GQ V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRSLPWPMLDPRECGI---KSVQEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + + S++ V+ E++ + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQIIAYE-VRMAFLQSQETVQPEYEESPYPLVDD 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++E + G+ R +++ + +F R R+E+ +LRG++S+L K Sbjct: 182 LERFYQHMEQMMTHSGFIRE-GSPGQVMSKMRRLFTRARPERDELNILRGMLSSLQK 237 >gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024] gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024] Length = 279 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 15/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L +L LV P+ +P ++ +A + + + + + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGSQDLFEHLEIVDT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE GLTNEE Sbjct: 77 LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194 +AL+N ++ PVNP + LN++QA+ ++ +E +++ + P +G+ + Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQQNLDQDADEMPLVQGQSMQWD 196 Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F +LE L E + P + + + L +F R +L R E LLRGI Sbjct: 197 EPLVTQKQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255 Query: 244 STLDKFS 250 S + + Sbjct: 256 SRVQALT 262 >gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] Length = 275 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 9/240 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV Q N+G ARA+ L +L LV P E+A SA A+ V+ V + Sbjct: 31 FVLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVAT 89 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD + TAR R P +AA + G V ++FGRER GLTNEE Sbjct: 90 LAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEE 149 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191 + L +A + P +P F SLN++ AV ++ +E +E +EQ A+ + Sbjct: 150 LQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA--ASHEQ 207 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + SF L +L+E + + + M L +F+R E +EV LLRGI++ + +R Sbjct: 208 MESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMAR 266 >gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396] gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396] Length = 257 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 15/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG AR M N L++L LV P D +P + A S ++ A V+ S +V ++ Sbjct: 7 IVLVNTSHPGNIGATARVMKNMRLSRLVLVEP-DRFPDDDATSRASGALDVLGSAQVVAS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNE 135 L+EAI + T+AR R+ V P++ A + +R+ + + +V I+FGRE GLTN+ Sbjct: 66 LEEAIDGCVLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREERGLTND 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTP------ 186 E+ + + P NP + SLN++ A ++ +E ++ +E+N ++ + P Sbjct: 126 ELQRCHLHVHIPSNPDYSSLNVAMAAQVICYELHMRWLLENEENQSYIQRLDGPGDAGWD 185 Query: 187 ---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 AT E+ +L +LE +L + + P E ++++ L ++ R L + E+ +LRGI+ Sbjct: 186 VEAATADEIERYLAHLEQTLVDIEFHDP-ENPRQLMSRLRRLYQRARLDKMEINILRGIL 244 Query: 244 STLDKFS 250 + K + Sbjct: 245 RSTQKMA 251 >gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] Length = 244 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 21/243 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + GQ+ V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191 EE+ + ++ NP + SLN++ AV ++ +E + + +EQ PA E Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT-----QEQAQPAVDHEEAP 177 Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F +LE +L G+ RP ++++ L +F R +E+ +LRG++++ Sbjct: 178 YPLVDDLERFYGHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236 Query: 246 LDK 248 +++ Sbjct: 237 IEQ 239 >gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 252 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 14/242 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P + + +A A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-QPDGHSVALAAGASDILKHAVIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAIAD + AT+AR+R +L P+EA L G V I+FGRE GL+NEE Sbjct: 66 VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALDGP-VAIVFGRENNGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-------- 188 + N +S P NP + SLN++QAV ++ +E + + EK E+ PA Sbjct: 125 LQKCNYHVSIPANPEYTSLNLAQAVQIICYEA-RVAHLEHEKREFEKGRPADYVEEKIEY 183 Query: 189 --KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E +F +LE +L G+ + +++ L +F R L R+E+ +LRG+++++ Sbjct: 184 PFAKERENFFGHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSI 242 Query: 247 DK 248 DK Sbjct: 243 DK 244 >gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha C91] Length = 248 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 11/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARAM L +L L+NP+ +P +A + ++NA ++++ V SN Sbjct: 12 IVLSHTSHPGNIGATARAMKTMGLNKLYLINPK-SFPDSEADARASNARDILETAHVCSN 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EA+ D A TAR R+ ++AAI E I Q+ V ++FGRE GLT Sbjct: 71 LEEALGDTFLAAALTARRRDLPHPTCNARQAAI---ELIRHAQHHPVALLFGRESAGLTA 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191 EI+ + P NP SLN++ AV +M +E +E + + + A+ E Sbjct: 128 AEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELRMVLEEDAAAHYFASRLPDA-ASLHE 186 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +LE + G+ P ++ K ++ + +F R L +EEV LLRG+++ +D + Sbjct: 187 IEGLHYHLERVMIHSGFMDP-DQPKHLMRRIRRLFARTRLEKEEVNLLRGLLTAVDPHNS 245 Query: 252 QSS 254 S Sbjct: 246 SKS 248 >gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 228 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + R + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRRVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 245 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 9/195 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM +QLR+V D W AR + A ++D+V+ F+ Sbjct: 16 LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGEILDNVQTFAT 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE Sbjct: 75 LAEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATKGE 191 + + + P+ +PSLN+ QAV++ ++ +E + S+ Q A + Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSKLNQVEAPVASAADG---QQLQALRQR 191 Query: 192 LLSFLDYLEISLEER 206 L L++S +E+ Sbjct: 192 FHQLLAQLDVSDDEK 206 >gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 245 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 9/195 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM +QLR+V D W AR + A ++D+++ F+ Sbjct: 16 LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGDILDNIQTFAT 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE Sbjct: 75 LADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATKGE 191 + + + P+ +PSLN+ QAV++ ++ +E + S+ Q A + Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSTLNQVEAPVASAADG---QQLQALRQR 191 Query: 192 LLSFLDYLEISLEER 206 L LE+S +E+ Sbjct: 192 FHQLLAQLEVSDDEK 206 >gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrosomonas europaea ATCC 19718] Length = 246 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARAM L++L LVNP+ +P +A + ++NA +++S V ++ Sbjct: 12 IVLSHTSHPGNIGATARAMKTMGLSRLYLVNPKS-FPDSEADARASNARDILESACVCTS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D A TAR+R+ ++AA L R V ++FGRE GLT+ E Sbjct: 71 LEEAMGDTFLAAALTARSRDLSHPTRNARQAAGELI-RYAHHHPVALLFGRESAGLTSAE 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 I+ + P N + SLN++ AV +M +E +E +V+ E + + PA+ E+ Sbjct: 130 ISHCQLTVQIPANSAYSSLNLAAAVQIMAYELRMVLEEGVVADEPD-PQLPEPASLQEIE 188 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +LE + + G+ P + K+ M + +F R L +EEV +LRG+++ ++ Sbjct: 189 GLHHHLEQVMVQSGFLDPTQPKRLMR-RMRRLFARTRLEKEEVNILRGLLTAVN 241 >gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii] gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 13/153 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVF 74 V+ILV+P+ GENIG AR M NF L +LRLV P G WP+EKAR+ +A A +ID+ +V+ Sbjct: 1 VVILVEPKRGENIGAAARGMKNFGLRELRLVRPAGGEWPNEKARAVAARAVDLIDAAKVY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ADL ++YA + R R L P +G +G++FGRE GL N Sbjct: 61 DDLDAALADLQYVYAASGRPRAQVCDALPP------------AGTRIGVMFGREDNGLYN 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +E+ +NAI++ +P F SLN+ QAVL+ +E Sbjct: 109 DELVRANAILTIDTDPNFYSLNLGQAVLITCYE 141 >gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 241 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 126/243 (51%), Gaps = 15/243 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L LVNP P A + SA A VI + + Sbjct: 7 IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGHATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 L +A+A + T+AR+R ++ P+E ER +V I+FGRER GLT Sbjct: 66 LDKALAGCGLVIGTSARSRTLSWPMVEPRECG----ERSVQQAEHASVAIVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189 NEE+ + ++ P NP + SLN++ AV L+ +E + +K EQ T + Sbjct: 122 NEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKT--EQKTDEVEYPLA 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+S+++K+ Sbjct: 180 DDMERFYHHLECVLNDSGFIRKAH-PGQIMNRLRRLFTRARPEMQELNILRGILSSVEKW 238 Query: 250 SRQ 252 +++ Sbjct: 239 AKK 241 >gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 241 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA + + T+AR+R+ +L P+E + + + GQ V ++FGRER GLTN Sbjct: 66 LDEATSGCSLVVGTSARSRSLPWPMLDPRECGL---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E S+ + + E + P + Sbjct: 123 DELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQYHESSYPLVD-D 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++E + + G+ R + M + +F R R+E+ +LRG++S+L+K Sbjct: 182 LERFYQHMEKMMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas sp. SN2] Length = 255 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV NIG ARAM L+ L LVNP P +A + +A A V+ + ++ S Sbjct: 7 IILVSTSHTGNIGSTARAMKTMGLSSLYLVNPVH-EPDGQASALAAGAGDVLANAKIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA++D + T+AR+R + +L P+E L + + S V ++FGRE GL+NEE Sbjct: 66 LEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEV-SNFPVALVFGRENSGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP + SLN++ AV + +E + E+ P + +L F Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYPLNE-DLERFY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +LE + R ++ L +F R +E+ +LRGI++++DK Sbjct: 184 THLETTLESTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDK 234 >gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18] Length = 245 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 12/234 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV Q NIGMV RAM N L LRLVNP + + + + D +++S R+F++ Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNPCQVDHLDAIKFAVSARD-LLESARIFTS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 L++A+AD + ATT R+ + P E + ER G + ++FGRE GLT Sbjct: 68 LEDALADSEYSVATTRRHGKYRSEICTPPE----IVERFAGCAPGSRLALVFGREDSGLT 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 +E+AL + F SLN+SQAVL+ +E ++ + + K +E A L Sbjct: 124 TDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGAAPAPVKAAREL---AGSSSLE 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++E + GY P + M+ + IF R EL EV LRG++S +D Sbjct: 181 PMYSHMEKTFLRIGYLNP-QNPDHMMRTMRRIFSRAELDEREVASLRGLLSQID 233 >gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 228 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + R + + +ID++ VFS Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AYLEPATRWVAHGSGDIIDNIAVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D+ F ATTAR+R + P E +L E+ ++ ++FGRE GLTNEE Sbjct: 64 LEEALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + + A + ++S Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDASADQYQLRALRERVMS 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469] gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469] Length = 228 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 5/189 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++R+V+ + + + D +ID++ VFS+ Sbjct: 5 IILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFSS 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P E +L E+ +V ++FGRE GLTNEE Sbjct: 64 LAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 +AL++ + P+ +PSLN+ QAV++ ++ M+ I + + + + Q T A + ++ Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLT-ALRTRVM 182 Query: 194 SFLDYLEIS 202 L L+++ Sbjct: 183 RLLSTLDVA 191 >gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] Length = 259 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 21/250 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P ++ + SA A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKV-EPDGQSIALSAGASDILKHLTRVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + AT+AR+R +L P+EA I L +G V I+FGRE GL+NEE Sbjct: 66 LAEAIADCSLVIATSARSRTLDWPMLDPREAGIKLTAEALNGP-VAIVFGRENNGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----------MENS--------IVSSEK 178 + ++ P NP + SLN++QAV ++ +E M++S IV +E Sbjct: 125 LQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQLAKMDDSEAAPQAAAIVEAET 184 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 +E +L F +LE +L G+ + M+ L +F R + +E+ + Sbjct: 185 APEEPQAYPLSADLERFYTHLESTLLATGFVIKNHPGQIMM-KLRRLFSRARVEEQEMNI 243 Query: 239 LRGIVSTLDK 248 LRGI++++DK Sbjct: 244 LRGILTSIDK 253 >gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150] gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150] Length = 251 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV NIG ARAM L L LV P+ +P +A+ +A AD +++S V + Sbjct: 8 IILVATSHPGNIGSTARAMKTMGLKSLYLVKPKS-FPDLRAQEMAAGADDLLESAVVTES 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ I T+AR R L P A ++N++ + I+FGRE GLTNEE Sbjct: 67 LDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQA-DNTEIAIVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + I+ P NP + SLN++QAV ++ +E + + Q+ AT E+ F Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIITYELRMKLLAPKAEVALRQDDYATAEEIEQFY 185 Query: 197 DYLE---ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 ++L+ I ++ F ++++ + +F R L + EV LLRG++S + K + Sbjct: 186 EHLKEVFIKIQ----FLKASNPRRLMQRVRRLFNRVSLEKMEVNLLRGMLSQVQKSIEWA 241 Query: 254 SRRN 257 S+R Sbjct: 242 SKRG 245 >gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591] gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 233 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 6/181 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM +LR+V+ AR + + ++D VF Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRLRIVDS-TAHLEPAARWVAHGSGDILDGAEVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F +P + VL E+ ++ ++FGRE GLTNEE Sbjct: 64 LTDALADVEFTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ + S + + TPA G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVAAAEPTPAESGQLSALR 178 Query: 197 D 197 D Sbjct: 179 D 179 >gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] Length = 238 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 9/181 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P EN+G ARAM T LR+V+ + D P+ AR + A ++D+ F+ Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSQADREPA--ARWVAHGAGDILDNACHFA 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L++A+AD+ F A+TAR+R F P E +L E+ + ++FGRE GLTN+ Sbjct: 63 TLEQALADVEFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + P+ +PSLN+ QAV++ ++ +SS V PA +GE L+ Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ------LSSLMQVHAVAEPAAQGEQLAA 176 Query: 196 L 196 L Sbjct: 177 L 177 >gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter aphrophilus NJ8700] Length = 244 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 15/238 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LT L LV P+ G ++A + +A A+ ++ S V N Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQGV-DDQAIALAAGAEDLVKSAVVVEN 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+AD + T+AR R+ S++ P+E +G+ V I+FGRER GLTNEE Sbjct: 66 FLQAVADCSLVIGTSARLRHLQNSLIEPRECGTKTVAHAMNGK-VAIVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA------TKG 190 + + ++ P NP + SLN++ AV L+ +E + ++ + +TPA + Sbjct: 125 LLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAAT---AEVTSTPANVDIYPSMQ 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F + E + G+ + + ++ L ++ R EL + E+ +L G++S ++K Sbjct: 182 ELEYFYHHTEQLYQSLGFI----QNQGVMQKLRRLYGRAELEKTELNILLGMLSAVEK 235 >gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 241 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAI+ + T+AR+R+ +L P+E + + + GQ V ++FGRER GLTN Sbjct: 66 LDEAISGCSLVVGTSARSRSLPWPMLDPRECGL---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELL 193 +E+ + ++ NP + SLN++ AV ++ +E + S E + TP E L Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQTQPDETPYPLVEDL 182 Query: 194 S-FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++E + + G+ R + M + +F R R+E+ +LRG++S+L+K Sbjct: 183 ERFYQHMEKIMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65] gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65] Length = 253 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 13/248 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRV 73 I+L+ NIG ARAM + L LV P+ P+ + A + ++ A ++ S +V Sbjct: 7 IVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLLASAKV 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S ++AI D + +AR+R+ ++ P++AA E + GQ V ++ GRER GLT Sbjct: 67 VSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRERTGLT 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---------NVKEQN 184 N+E+A+ I P NP + SLN++ A ++ +E ++ + V N Sbjct: 127 NDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVRMAALDHQQALEPEYEGDWGVSWDN 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT+GE+ F +LE +L + + P K+++ L +F R + EV +LRGI+ Sbjct: 187 ELATQGEMNGFFQHLEETLVDIQFLDP-NNPKQLMPRLRRLFQRAMPDKVEVNILRGILK 245 Query: 245 TLDKFSRQ 252 + + ++Q Sbjct: 246 MVLRNNKQ 253 >gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046] gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046] Length = 282 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 29/263 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ + + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATDLIEQIEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-----IVLNERIFSGQNVGIIFGRERWG 131 L +AI D H ++ T+AR+R +L + AA V+N++ Q+V ++FGRE G Sbjct: 77 LADAIKDCHLVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQ----QDVAVVFGREDRG 132 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190 LTNEE+A++N ++ PVN + LN++QA+ ++ +E ++ + E E T P T Sbjct: 133 LTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLAAVESGKDETATMPVTDT 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDL---------------YSIFIRPELMREE 235 E + + + L ++ E+ F P +KML ++ +F R +L R E Sbjct: 193 ESMQWDEPL-VTHEQMEQFYP--HIEKMLAEIEFLDPKNPRLLPLRLRRLFGRIQLDRME 249 Query: 236 VFLLRGIVSTLDKFSRQSSRRNN 258 LLRGI S + + + +++N Sbjct: 250 YHLLRGIFSRVQALNNGTWKKSN 272 >gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 271 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 21/269 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L+QL LV P+ +P + +A A +++ +++ Sbjct: 6 IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPK-TYPHPDIDALAAGAQDLVEKIKIVDT 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135 L++AI D H ++ T+AR+R +L + AA + ++ I Q + I+FGRE GLTNE Sbjct: 65 LEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGLTNE 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENSIVSS--------EKNV 180 E+AL+N ++ PVN + LN++QA+ ++ +E ++N SS EK Sbjct: 125 ELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTEKIE 184 Query: 181 KEQNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + + P ++ F +LE L + + P + + + L +F R +L R E LL Sbjct: 185 MDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDP-QNPRLLPLRLRRLFGRAQLDRMEYHLL 243 Query: 240 RGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 RGI S + S ++ L K E+S+ Sbjct: 244 RGIFSRVQALSHGKWKKTA--LDKEEQSD 270 >gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 248 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 9/246 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+ + T+AR+R +L P+E ++ I Q+ V I+FGRER GLTN Sbjct: 66 LDQALEGCGLVVGTSARSRTLPWPMLEPRECGVL---SIQEAQHAPVAIVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTP-ATKGEL 192 EE+ + ++ P NP + SLN++ AV ++ +E + ++ V + +P +L Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQQGEVAHEESPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K + Sbjct: 183 ERFYQHLEDTLLHTGFIRQ-SHQGQVMNKLRRLFTRARPETQELNILRGILSAITKTTPS 241 Query: 253 SSRRNN 258 +NN Sbjct: 242 DPSQNN 247 >gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] Length = 228 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 6/176 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+ F+ Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGEILDGVQTFAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P++ L ER ++FGRE GLTNEE Sbjct: 64 LSQALADVDFTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + L++ + P+ +PSLN+ QAV++ ++ E VS+ Q T A +G+L Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMNVSA-----PQETMANEGQL 174 >gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 234 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 3/187 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM ++LR+V D W AR + A ++DSV+ + Sbjct: 5 LILVSPARPENIGAAARAMKTMGFSELRIV-ASDAWQDPAARRVAHGAGEILDSVKTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F+ P + +L E+ + ++FGRE GLTNEE Sbjct: 64 LSEALQDVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKE-QNTPATKGELLS 194 + + + P+ +PSLN+ QAV++ ++ N +V+ V + Q A + Sbjct: 124 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSALNQVVAQPAAVADGQQLQALRARFQQ 183 Query: 195 FLDYLEI 201 L LE+ Sbjct: 184 LLVRLEV 190 >gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121] gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121] Length = 247 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 9/240 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ N+G +ARAM N L+ L LV+P D +PSE+A S +A A ++++ + Sbjct: 7 IVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSEEATSRAAGAVDLLENATIVET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134 +EAIAD + T+AR+R ++ +E A V+ + Q + I+FGRE+ GL N Sbjct: 66 FEEAIADCSLVVGTSARHRTFQLPIMNARECAESAVIEA---TNQPIAIVFGREKTGLLN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193 +EIA + + N +P LNISQAV ++ +E M + S+ +V+ P KG++ Sbjct: 123 DEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMASQNKSANTDVEVAEYP-RKGDMD 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE +L + F K+L+ L F R + E+ +LRG+++ + + + ++ Sbjct: 182 LFHTHLEETLYDIN-FVIKNHPGKVLEKLQRFFNRSRPEKSELGILRGVLAAVQRETEKA 240 >gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185] gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195] gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223] gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS185] gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS195] gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS223] gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS678] Length = 242 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 3/234 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P + + +A A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVKVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + AT+AR+R +L P+EA + L G V I+FGRE GL+NEE Sbjct: 66 LAEAIADCSLVIATSARSRTLDWPMLEPREAGVRLATEALKGP-VAIVFGRENHGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + E +E + F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQKEVAEEELTEYPLAADQERFF 184 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LE +L G+ + M+ L +F R + +E+ +LRGI+++++K + Sbjct: 185 AHLETTLLSTGFIIKNHPGQVMM-KLRRLFSRARIESQEMNILRGILTSIEKVT 237 >gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 266 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDSV 71 ++LV + EN+GMVARA N + LV+P DG P++ ++ ++ V Sbjct: 7 VVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDILSGV 66 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV L EA+AD ++ TTAR + +L+P+ AA + G V ++FG E G Sbjct: 67 RVVGTLAEAVADCAVVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVFGPEDRG 126 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190 LTN+EI + +++ P P SLN++QAVL++++EC++ + + ++ A Sbjct: 127 LTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYECLKGTATHPFRPGPAPDSRLANHA 186 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL D L +L Y R + + + R L R E L+ G+ + + Sbjct: 187 ELELLHDTLRDTLLAIDYLR-ADNPDYFMMPVRRFLGRTRLRRHEFDLVMGVCRQVKRM 244 >gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 252 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 8/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ N+G +ARAM N L+ L LV+P D +PS++A S +A A ++++ + S Sbjct: 7 IVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSDEATSRAAGAVDLLENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EAI+D + T+AR+R ++ +E A V+ E +V I+FGRE GL NE Sbjct: 66 LEEAISDCSLVIGTSARHRTFQLPIMNARECAETVIPEA--KQHDVAIVFGRETTGLLNE 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194 EIA + + N +P LNISQAV ++ +E M N + KE K E+ Sbjct: 124 EIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMANQ--DQSIHAKETAEYPRKKEMDL 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE +L + K+L+ L F R ++E+ +LRG+++ + + Sbjct: 182 FHEHLEETLYGLNFIIK-NHPGKVLEKLQRFFNRSRPEKQELGILRGVLAAVQR 234 >gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] Length = 245 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++++ R+ N Sbjct: 13 VILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILENARIVDN 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+A AT R+ N + +P+ A +L E S + G+IFGRE GLTN+ Sbjct: 73 LTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLAE---SEKPAGLIFGREDRGLTNQ 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 EI + ++S P +P + SLN++ AV + +E + S+++ E AT L S+ Sbjct: 130 EINYAQKLVSIPTSPEYTSLNLATAVSICCYE-LSQSLMTMEPGKMPTRDIATLDVLESY 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 LE L GY P +M + ++ R EL EV +LRGI+ Sbjct: 189 YQELESLLLSIGYLYPHTTSSRM-EKFRHLYNRSELTTTEVAMLRGIL 235 >gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MC40-6] Length = 273 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 20/259 (7%) Query: 1 MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 WPSE--KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 + +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 170 -----ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224 + S + + E T A E+ +LE +L + P KK++ L Sbjct: 184 VAFLEQGSGLHHAQ--AEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRR 240 Query: 225 IFIRPELMREEVFLLRGIV 243 +F R L REEV +LRGI Sbjct: 241 LFARTGLEREEVNILRGIA 259 >gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica] Length = 259 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 13/242 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L LVNP P A + SA A VI S + + Sbjct: 25 IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGSATIVDS 83 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L +A+A + T+AR+R ++ P+E ER V I+FGRER GLT Sbjct: 84 LDKALAGCELVIGTSARSRTLSWPMVEPRECG----ERSVQAAEHVPVAIVFGRERVGLT 139 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190 NEE+ + ++ P NP + SLN++ AV L+ +E + +K E P Sbjct: 140 NEELQKCHFHLNIPTNPEYSSLNLAMAVQLVSYEIRMAYLARQDKVEPAADETEYPLVD- 198 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+++++K++ Sbjct: 199 DMERFYHHLEHVLHDSGFIRKAH-PGQIMNKLRRLFTRARPEMQELNILRGILTSVEKWA 257 Query: 251 RQ 252 ++ Sbjct: 258 KK 259 >gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] Length = 248 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 +IL P+ ENIG VARA N Q+ LV P + W KA ++ +A +++++R+ Sbjct: 7 VILFRPKYPENIGSVARACLNMGCGQIVLVEPWN-WDQGKALPLATHHAGHLLENIRIHG 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A F Y TTAR + + P+EAA + E+ +G V I+FG E GLTNE Sbjct: 66 TLAEALAPYSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDKGLTNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E L N +++ P SLN+SQAV+++++EC + S+ K Sbjct: 126 ETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAKPFK 168 >gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] Length = 273 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 16/257 (6%) Query: 1 MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 WPSEK--ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 + A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPDAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGTG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + + E T A E+ +LE +L + P KK++ L +F Sbjct: 184 VAFLEQGSELHQAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242 Query: 227 IRPELMREEVFLLRGIV 243 R L REEV +LRGI Sbjct: 243 ARTGLEREEVNILRGIA 259 >gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155] gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS155] Length = 242 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 3/234 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P + + +A A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVKVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + AT+AR+R +L P+EA + L +G V I+FGRE GL+NEE Sbjct: 66 LAEAIADCCLVIATSARSRTLDWPMLEPREAGVRLATEALNGP-VAIVFGRENHGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + E +E + F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQKEVAEEELTEYPLAADQERFF 184 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LE +L G+ + M+ L +F R + +E+ +LRGI+++++K + Sbjct: 185 AHLETTLLSTGFIIKNHPGQVMM-KLRRLFSRARIESQEMNILRGILTSIEKVT 237 >gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] Length = 244 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 16/243 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L LVNP P + + SA A VI + + + Sbjct: 7 IILVETSHTGNMGSAARAMKTMGLTNLYLVNPLV-QPDSHSIALSAGASDVIGNATIVNT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L EA+A + T+AR+R ++ P+E ER V ++FGRER GLT Sbjct: 66 LDEALAGCELVIGTSARSRTLSWPMVEPRECG----ERCIKAAGHSPVAVVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PA 187 NEE+ N + P NP + SLN++ AV L +E + EK+ ++T P Sbjct: 122 NEELQKCNYHLYIPTNPEYGSLNLAMAVQLASYEIRMAYLAVQEKSEHVESTEHEVEYPP 181 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + ++ F +LE L + G+ R ++++ L ++ R +E+ +LRGI++++ Sbjct: 182 VE-DMERFYQHLEQVLNDSGFIRKAH-PGQIMNKLRRLYTRARPETQELNILRGILTSMG 239 Query: 248 KFS 250 K+S Sbjct: 240 KWS 242 >gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 249 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 9/243 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+ + T+AR+R +L P+E + I Q V I+FGRER GLTN Sbjct: 66 LDQALEGCGLVVGTSARSRTLPWPMLEPRECGV---RSIQEAQRAPVAIVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192 EE+ + ++ P NP + SLN++ AV ++ +E + S ++ E++ +L Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDSQQQGEPAHEESPYPLADDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L G+ R + + M + L +F R +E+ +LRGI+S + K + Sbjct: 183 ERFYQHLEETLLHTGFIRQAHQGQVM-NKLRRLFTRARPENQELNILRGILSAITKTASS 241 Query: 253 SSR 255 + + Sbjct: 242 TDK 244 >gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 267 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 127/257 (49%), Gaps = 17/257 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+V P N+G ARA+ +L LV+PR D +A + ++ A V+++ R+ + Sbjct: 11 IMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARICA 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R+ ++AA + E + + V I+ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTARVRDLGPPPCDIRQAATLSREHLDQKPDGCVAIVLGTERSGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIV-----SSEKNVKEQN 184 NE+I L I P NP + SLN++QA+ L WE +E + S Sbjct: 131 NEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELRYALLEAAGATLLPPSKAHQPDPGA 190 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+ + + L + E +L + P KK++ + +F R EL R+E+ ++RG+ + Sbjct: 191 QPASSEAVQAMLAHWEQALVAVEFLNPAH-PKKLMPRMRHLFTRAELSRDEIDMMRGVCT 249 Query: 245 T-LDKFSRQS--SRRNN 258 LD R R+NN Sbjct: 250 AMLDIAGRAGPRQRKNN 266 >gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] Length = 292 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 31/255 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR + +A + ++ AD V+ V Sbjct: 25 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAMASGADDVLACAHVVP 84 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R P+ AA + + G+ + ++FG ER GL+NE Sbjct: 85 TLADALSGVHWSVALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 143 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG---- 190 ++ +A+ P NP + SLN++QAV ++ +E N + S E+ +V T +T Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMNYLTSGEEAHVHTHATASTSAGRAP 203 Query: 191 ----------------------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 E+ S +LE +L + P KK++ L +F R Sbjct: 204 HAPGAAPAGSAAEPAGPRAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRLFAR 262 Query: 229 PELMREEVFLLRGIV 243 L REEV ++RGI Sbjct: 263 SGLEREEVNIVRGIA 277 >gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3] gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis HAW-EB3] Length = 254 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 12/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P + + +A A ++ + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVA-PDGHSVALAAGASDILKHAVTVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GL+NEE Sbjct: 66 VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALTGP-VAIVFGRENNGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187 + N ++ P NP + SLN++QAV ++ +E + +++ V+ N Sbjct: 125 LQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPEGYVEPVNEYP 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E +F +LE +L G+ + +++ L +F R L R+E+ +LRG+++++D Sbjct: 185 FAKERENFFSHLEETLLNTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSID 243 Query: 248 K 248 K Sbjct: 244 K 244 >gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] Length = 244 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM N L++L LV PR+ +P+ +A +A+A V++S R+ + Sbjct: 8 IVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPRE-FPAPEATWRAASASDVLNSARIVDS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134 + EAIAD F+ T+AR R VL P+ A + ++ R + V I+FGRE GLTN Sbjct: 67 VDEAIADSQFVVGTSARGRRIPWPVLDPRRCAERLAVSSRT---ERVAILFGREDRGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTP-ATKGE 191 EE+ N P + + SLN++ AV ++ +E + E ++ + P T E Sbjct: 124 EELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELRMWGLAERLPEAADEDWDVPFVTTEE 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F +LE +L + G+ P ++++ L +F R + E+ +LRGI++ K Sbjct: 184 MTRFYRHLEETLTDIGFLDPA-APRQLMPRLARLFNRVRIDDMEMGILRGILTEAQK 239 >gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] Length = 243 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 I+LV NIG ARAM L + LV P DG +A + +A A + ++ R+ Sbjct: 7 IVLVGTTHSGNIGSAARAMKVMGLKHMVLVAPECKVDG----QAIALAAGASDIANNARI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++EA+AD + T+ARNR+ +L P+E I E V +FGRER GLT Sbjct: 63 VDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEA-PQHPVAFVFGRERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKGE 191 NEE+ N ++ P NP + SLN++ AV + +E I S + VKEQ+ P + + Sbjct: 122 NEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEARMAWIDSQAYKGEVKEQSYPLAE-D 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE L++ G+ ++ L +F R +E+ +LRG++S+++K + Sbjct: 181 LERFYVHLEQVLDKTGFINK-SHPGMVMTKLRRLFNRARPESQELNILRGVLSSVEKQMK 239 Query: 252 QSSR 255 ++ + Sbjct: 240 EAQK 243 >gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 241 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+ + T+AR+R +L P+E V + + V ++FGRER GLTNEE Sbjct: 66 FDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 + + ++ P NP + SLN++ AV ++ +E + + + + +E P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVD-DLE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ RP + + M + L +F R +E+ +LRGI+S++ K Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPESQELNILRGILSSVQK 237 >gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1] Length = 250 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+PQ NIG VAR M N L QL +V+PR E A+ + +A+ V+ V + Sbjct: 9 IVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQQANVTDS 68 Query: 77 LKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+ A+AD ++AT R+ + P++AA ++ + ++FGRE GLTN Sbjct: 69 LEAALADCQRVFATVGRDVADLALPCWTPRQAA----PQLLAVVQSALVFGREDRGLTNA 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ ++ ++ P +PSLN++QAV + +E + S E + P + L F Sbjct: 125 ELECAHGLVKIPTANTYPSLNLAQAVAVCCYELWLTACDSGETFPQGDAVPFER--LQGF 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 D+LE L + G+ P +M + S+ R EV LLRG+V ++ Sbjct: 183 YDHLEQVLLQIGFLYPHTAASRM-AKVRSLLGRAYPTEAEVALLRGMVRQVE 233 >gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria AMMD] Length = 273 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 18/258 (6%) Query: 1 MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-- 49 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 50 DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 + +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 NVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC- 168 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 169 ---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 +E E T A E+ +LE +L + P KK++ L + Sbjct: 184 VAFLERGSELHHAQA-EVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRL 241 Query: 226 FIRPELMREEVFLLRGIV 243 F R L REEV +LRGI Sbjct: 242 FARTGLEREEVNILRGIA 259 >gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 241 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+ + T+AR+R +L P+E I + V ++FGRER GLTNEE Sbjct: 66 FDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRSAQEAEHAP-VALVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 + + ++ P NP + SLN++ AV ++ +E + + + + +E P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVD-DLE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ RP + + M + L +F R +E+ +LRGI+S++ K Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPESQELNILRGILSSVQK 237 >gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + I + V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSISEAEQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192 EE+ + ++ NP + SLN++ AV ++ +E + + EK V KE+ +L Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKPVEPKEETAYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L G+ R + M + L +F R +E+ +LRGI++++++ +++ Sbjct: 183 ERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRMFTRARPESQELNILRGILASIEQKNKE 241 >gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568] gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 228 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+ F+ Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGDILDGVQTFAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD+ F ATTAR+R F P++ L+ER ++FGRE GLTNEE Sbjct: 64 LEQALADVDFTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + L++ + P+ +PSLN+ QAV++ ++ E VS+ Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMKVSA 163 >gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] Length = 253 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 9/238 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV PQ+ ENIG VARAM N L++L +V+P++ ++++ + V++ + + N Sbjct: 12 VVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDMDISRN 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ ++ TTARN ++ P+ A L I G +V I+FG E GL+N++ Sbjct: 72 LREALVPFQYLVGTTARNGTLRPALTQPRTLAQKLIP-ISQGNSVAILFGPEDRGLSNDQ 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194 + + I++ P F SLN++QAV+++ +E ++++ +E P A EL Sbjct: 131 LRFCHTILTVPTAS-FSSLNLAQAVVIVCYEL----FLATDGEHREPPVPRLANSFELEG 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+L L + G+ P + + L ++ R L EV ++RGI +D + Q Sbjct: 186 MYDHLREMLSKIGFLDP-QNPEHWLLNIRRFLARVPLRAREVRIIRGICRQMDWYVSQ 242 >gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 20/254 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN 76 +V+P N+G ARA+ ++L LV P+ D +A + ++ A V+++ R++ + Sbjct: 1 MVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTTQPEAIALASGALDVLENARIYPS 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---IFGRERWGLT 133 L+EA+A + +A TAR R+ ++AA + E + +G G+ + G ER GLT Sbjct: 61 LEEALAPVTMAFALTARVRDLGPPPCDIRQAADLAREHL-AGTAEGVAAVVLGTERAGLT 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---------SSEKNVKEQN 184 N +IAL + I P NP + SLN++QA+ L WE +V S+ + Sbjct: 120 NAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVEQGAALLPASTAQEPSRGA 179 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+ + +FL + E +L + P KK++ + +F RP L R+EV ++RG+ + Sbjct: 180 EPASGEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRPALTRDEVDMMRGVCT 238 Query: 245 TLDKFSRQSSRRNN 258 + ++RRN Sbjct: 239 AM----LATARRNG 248 >gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 252 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 10/240 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM L +L LV P + R S A A+ V+ V L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGLARLVLVAPECSVDVDAYRRS-AGAEDVLQQAPVLPTL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD + TAR+R L P +AA L + V ++FGRER GLTNEE+ Sbjct: 69 ADALADCRLVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGRERTGLTNEEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQNTPATKGE 191 +A + P +P F SLN++ AV ++ +E E ++ ++ ++E PA+ + Sbjct: 129 QQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLTQLRSEAAVPAAAPGLRE--APASHAQ 186 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L++ + + + M L +F+R L +EV LLRG++S + +R Sbjct: 187 LEGLFGQLAETLDDIDFHKGRAPESAM-RKLRRLFLRNALSEQEVRLLRGVLSDAQRMAR 245 >gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] Length = 254 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 12/242 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P + + +A A ++ + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVA-PDGHSVALAAGASDILKHAVTVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD + AT+AR+R +L P+EA L E +G V I+FGRE GLTNEE Sbjct: 66 VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVESALTGP-VAIVFGRENNGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187 + + ++ P NP + SLN++QAV ++ +E + +K V+ N Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQKEFESNKLEGFVEPDNEYP 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E +F +++E +L + + +++ L +F R + R+E+ +LRGI++++D Sbjct: 185 FSKERENFFEHMENTLLSTNFIVK-QHPGQVMTKLRRLFSRARIERQEMNILRGILTSVD 243 Query: 248 KF 249 K Sbjct: 244 KI 245 >gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 250 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 21/253 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A S +A A VI ++ + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEAKIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIA + T+AR+R+ +L +E + + + GQ V ++FGRER GLTN Sbjct: 66 LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191 EE+ + ++ NP + SLN++ AV ++ +E + S +EQ +PA K E Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQS-----QEQASPAPKYEESP 177 Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ Sbjct: 178 YPLVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSS 236 Query: 246 LDKFSRQSSRRNN 258 +K + +N Sbjct: 237 FEKRKNEKKEADN 249 >gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] Length = 253 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L++L L+NPR +P +A + +A AD V+ + V +++ EA+ + Sbjct: 22 NIGAAARAMKAMGLSRLYLINPRH-FPDPQASAMAAGADDVLQNAVVCASIDEALDGVVL 80 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 TAR R+ V P+EA + ++ + Q V ++FG E GLTNEE + + +++ Sbjct: 81 TVGMTARQRDISNEVSVPREAMPQVVQQAQTLQ-VALLFGTEMSGLTNEEASRAQMLVNI 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELLSFLDYLEISLEE 205 P NP F SLN++ AV ++ +E S+ + EQ+ PA ++ F+ +LE +L E Sbjct: 140 PANPEFSSLNLAAAVQVISYEL---SVAAQNYQPVEQSLQPAAHQQVEGFMSHLEKTLHE 196 Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 G+F + +M+ L ++ R +E+ +LRGI+S ++ Sbjct: 197 IGFFT-TQNPARMMQRLRRLYARARPEADEINILRGILSVTTEY 239 >gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 3/243 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ ENIGMVARA N + +L +V P P + ++ V++SVR Sbjct: 8 VVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATPKGVPVLESVRHEDT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+A + TTAR + +L+P+ AA V+ + + +G V I+FGRE GLTNEE Sbjct: 68 LAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRGLTNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLSF 195 + + +++ P + SLN++QAVL++++EC + S K+ + T E Sbjct: 128 TEVCSRLVTIPTSEA-SSLNLAQAVLILLYECFKLSDARPFHKSAGALSRVVTHEEQEIL 186 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 L+ +L + Y R ML + + L R E +L GI + + +R ++ Sbjct: 187 FAALQDTLLDIDYLREDNPDYFML-PVRRFMQKASLRRHEFDMLMGICRQVRRLARVAAE 245 Query: 256 RNN 258 + + Sbjct: 246 KED 248 >gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 234 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 4 IIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+ Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 241 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATLVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ + + T+AR+R +L P+E V + + V ++FGRER GLTN+E Sbjct: 66 LDQALEGCNLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 + + ++ P NP + SLN++ AV ++ +E + + + + +E P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVD-DLE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ RP + + M + L +F R +E+ +LRGI+S++ K Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237 >gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] Length = 463 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 40/228 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------------ 51 VI+LV+P+ GENIG AR M NF L +LRLV P G Sbjct: 152 VIVLVEPKRGENIGAAARGMKNFGLRELRLVRPMAGAGGGGGGGGGGGGGGGGDRAVDAG 211 Query: 52 -------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104 WP EKAR+ +A A V+DS +V+ L A+ADL ++YA + R R K LA Sbjct: 212 GGSGGWYWPDEKARAVAARAVDVVDSAKVYDTLDAALADLQYVYAASGRPRAQDK--LA- 268 Query: 105 KEAAI---VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 K+ + V + +G +G++FGRE GL NEE+ +NAI++ +P F SLN+ QAV Sbjct: 269 KDVVLLRQVQDSLPPAGTRIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAV 328 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYF 209 L++ +E + + A++ E+ LD L +L+ R +F Sbjct: 329 LIVCYELFR---APRRPGLGAKRDRASRREVEGMLDRLFRALDARAFF 373 >gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans ATCC 17616] Length = 289 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL NE Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + +++ + T A E Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSDE 224 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 225 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275 >gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 276 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL NE Sbjct: 93 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + +++ + T A E Sbjct: 152 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSDE 211 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 212 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 262 >gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661] gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661] Length = 233 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 9/191 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P+ EN+G ARAM +LR+VN + AR + A ++D+ + + Sbjct: 5 LILVSPRRPENVGAAARAMKTMGFDELRIVNSQ-AHLEPAARWVAHGAGEILDNATHWDS 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD+ F ATTAR+R F+ P++ +L E+ Q+ ++FGRE GLTNEE Sbjct: 64 LDAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195 +AL + + P+ +PSLN+ QAV++ C + S + +KE PA +L + Sbjct: 124 LALVDVLTGIPMAADYPSLNLGQAVMVY---CYQLSALRQVSAIKE--APADAQQLDALR 178 Query: 196 --LDYLEISLE 204 LD L +SLE Sbjct: 179 QRLDRLLVSLE 189 >gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103] gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103] Length = 247 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F Sbjct: 20 LILVSPARAENIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRVAHGAGDILDRIKTFDT 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE Sbjct: 79 LAEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEE 138 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + + P+ +PSLN+ QAV++ ++ Sbjct: 139 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQ 169 >gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 233 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 6/176 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM +LR+V+ R AR + + ++D+V VF Sbjct: 5 IILVAPARPENVGAAARAMKTMGFGRLRIVDSR-AHLEPAARWVAHGSGDILDAVDVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE Sbjct: 64 LADALADIDFTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 +AL++ + P+ +PSLN+ QAV++ ++ + S + + PA G+L Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVAVAEPMPAESGQL 174 >gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72] Length = 242 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L+QL LV P + +P A + ++ AD ++ + RV +L EA+A Sbjct: 22 NIGAAARAMKTMGLSQLWLVAP-ESFPDPVADARASGADDLLRNARVVGSLAEALAGTVL 80 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A TAR R + AA+ L R +V ++FG E GL+NE++ L +S Sbjct: 81 AAAVTARRRELALPRRDARAAAVEL-LRFAEQGDVALVFGNETSGLSNEDVLLCGMPVSI 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206 P NP F SLN+ AV L+ +E M + + + + AT E+ FL +LE ++ E Sbjct: 140 PANPAFSSLNLGAAVQLLCYE-MRMAALQPQLDADPAPRLATHDEVEGFLQHLEQAVTES 198 Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 G+ P +++L L +F R L +EEV +LRG++S+ + Sbjct: 199 GFHEP-SNPRRLLPRLRRLFGRVRLEKEEVGILRGMLSSFQR 239 >gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617] Length = 241 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAI+ + T+AR+R+ +L P++ + + + GQ V ++FGRER GLTN Sbjct: 66 LDEAISGCSLVVGTSARSRSLPWPMLDPRQCGL---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192 +E+ + ++ NP + SLN++ AV ++ +E + S E + TP +L Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQPDETPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++E + + G+ R + M + +F R R+E+ +LRG++S+L+K Sbjct: 183 ERFYQHMEKIMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227] Length = 228 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 105/189 (55%), Gaps = 5/189 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++R+V+ + + + D +ID++ VFS+ Sbjct: 5 IILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFSS 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 +AL++ + P+ +PSLN+ QAV++ ++ M+ I + + + + Q T A + ++ Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLT-ALRTRVM 182 Query: 194 SFLDYLEIS 202 L L+++ Sbjct: 183 RLLSTLDVA 191 >gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2] gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis Aspo-2] Length = 248 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 2/158 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 +IL P+ ENIG ARA N +++L +V P + +KAR ++A+A ++DS RV Sbjct: 7 VILFRPKYPENIGSAARACLNMGVSRLIIVAPYN-LDMDKARPLATAHARHILDSARVVE 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ +Y TTAR K +++P A V++ER+ SG V I+FG E GLTN+ Sbjct: 66 TLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGPEDTGLTND 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E ++ + +++ P + SLN++QAV+++++EC + ++ Sbjct: 126 ETSVCSGLMTIPTSREGTSLNLAQAVVVVLYECFKRAL 163 >gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 228 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 3/192 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S E A + L Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADELQLQALRARFLR 183 Query: 195 FLDYLEISLEER 206 L LE + + + Sbjct: 184 LLTTLEAADDHK 195 >gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] Length = 254 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 12/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P + + +A A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-QPDGHSIALAAGASDILKHAVIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAIAD + AT+AR+R +L P+EA L G V I+FGRE GLTNEE Sbjct: 66 VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALEGP-VAIVFGRENNGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKN-----VKEQNTPA 187 + + ++ P NP + SLN++QAV ++ +E +E+ +K V+E+ Sbjct: 125 LQKCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLEHEKRELDKGRSVDYVEEKIEYP 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E +F ++LE +L G+ + +++ L +F R L R+E+ +LRG+++++D Sbjct: 185 FAKERENFFEHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSID 243 Query: 248 K 248 K Sbjct: 244 K 244 >gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L L L+NPR +P +A + +A AD V+ S V S++ EA+ + F Sbjct: 22 NIGAAARAMKTMGLQHLYLINPR-YFPDAQATAMAAGADDVLQSAVVCSSIDEALQGVVF 80 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A TAR R+ V AP+EA + + S V ++FG E GLTNEE+ + ++ Sbjct: 81 TVAMTARLRDISIEVKAPREAMPEVLQHAASNP-VALLFGTEMSGLTNEEMGKAQLGVNI 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206 P NP F SLNI+ AV +M +E N S Q PAT + +LE +L E Sbjct: 140 PANPDFSSLNIAAAVQVMAYEL--NVAAQSFTPAIPQIEPATHERVEGLYAHLEKTLFEI 197 Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 G+F + +++ L ++ R L EE+ +LRG+++ +++ + +R Sbjct: 198 GFFT-TQNPARLMQRLRRLYSRTRLEDEEINILRGMLTVATEYNARLRKR 246 >gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella halifaxensis HAW-EB4] Length = 251 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 11/248 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L P+ P + + +A A ++ + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAITVGS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GLTNEE Sbjct: 66 VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALTGP-VAIVFGRENNGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-------EQNTPATK 189 + + ++ P NP + SLN++QAV ++ +E + E V+ ++ P+++ Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVESGVEPAPVDENDEAYPSSR 184 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E +F ++LE +L + +++ L +F R + R+E+ +LRGI++++DK Sbjct: 185 -ERENFFEHLENTLLSTNFIVK-NHPGQIMTKLRRLFSRTRIERQEMNILRGILTSIDKV 242 Query: 250 SRQSSRRN 257 ++ ++ Sbjct: 243 VDKTETKD 250 >gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355] Length = 234 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F Sbjct: 7 LILVSPARAENIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRLAHGAGDILDRIKTFDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE Sbjct: 66 LAEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + + P+ +PSLN+ QAV++ ++ Sbjct: 126 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQ 156 >gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 261 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 4/238 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ NIG ARAM L+ L LV+P + P +A + +A A V+ + ++ Sbjct: 7 IILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVN-EPDGQASALAAGAGDVLANAKIVGT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE GLTNEE Sbjct: 66 LEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP + SLN++ AV + +E + + ++ E + T +L F Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYE-IRMAFLNRETYPSVEETYPLNEDLERFY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 +LE +LE + R ++ L +F R +E+ +LRGI++++DK + +S Sbjct: 184 AHLETTLEGTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDKSVKSAS 240 >gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227] gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94] gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae CDC 74-1112] gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC 796-83] gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74] Length = 228 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] Length = 242 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 5/189 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM TQLR+V+ + + D +ID++ VF Sbjct: 19 IILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGD-IIDNINVFPT 77 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNEE Sbjct: 78 LAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNEE 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELL 193 +AL++ + + +PSLN+ QAV++ ++ + I KN+ E A + +L Sbjct: 138 LALADVLTGVTMVADYPSLNLGQAVMVYCYQ-LAGLIQQPAKNIDVTDELQLQALRARVL 196 Query: 194 SFLDYLEIS 202 L L +S Sbjct: 197 RLLATLNVS 205 >gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401] gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 228 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas atlantica T6c] Length = 241 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+QL LV+P P K+ + +A A V+ + ++ S Sbjct: 7 IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVS-PPDGKSSALAAGAGDVLANAKIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 + EA+AD + T+AR+R +L P+E E++ S V ++FGRE GL+ Sbjct: 66 VAEAVADCGLVVGTSARSRTLSWPMLEPRECG----EKLVSEVPKYPVALVFGRENNGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEE+ + + P NP + SLN++ AV + +E + + + Q +L Sbjct: 122 NEELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRREANVQEEYPLADDLE 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE +L + + P + ++ L +F R +E+ +LRGI+++++K S+ + Sbjct: 182 GFYSHLEQTLHKTNFIIP-QHPGMVMTKLRRLFNRARPETQELNILRGILASIEKSSKDN 240 Query: 254 S 254 + Sbjct: 241 T 241 >gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] Length = 278 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 21/269 (7%) Query: 9 QNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 QN+ P+ I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 6 QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I+ + + L++AI D H ++ T+AR+R +L + AA + QN+ I+ Sbjct: 65 QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIV 124 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--------VSS 176 FGRE GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E ++ S+ Sbjct: 125 FGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTSN 184 Query: 177 EK-NVKEQNTP------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 E+ +K+Q T T+ ++ F + E L E F + + L +F R Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIE-FLDPNNPRLLPLRLRRLFGRI 243 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 +L R E LLRG+ S + + S +++ Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272 >gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 256 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + S +G I+LV+P NIG ARAM L L LV+PR +P +A + ++ A+ + Sbjct: 2 IGTSLQGLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPR-FFPDPEATALASGAEDI 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++S +V +NL A+ H +Y T+AR R +EAA + + +G + ++FGR Sbjct: 61 LESAQVCTNLDTALQGCHKVYGTSARGRRIQWPASNAREAAGEILADLDTG-DCALLFGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS------EKNVK 181 ER GLTN E+ ++ P + SLN+ QAV ++ +E ++ + ++V Sbjct: 120 ERTGLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYELHMAALTAQPAQDVPAEDVP 179 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 EQ PA ++ F +L+ L G+ + + + +M+ L +F R + EV +LRG Sbjct: 180 EQ--PAPIEDMEGFYGHLQHVLRRSGFLQEI-RATRMMRRLRRLFDRARPSQNEVNILRG 236 Query: 242 IVSTLDKFSRQSSRRNN 258 I++ +++++ + R++ Sbjct: 237 ILTEIERWASKVDRKDQ 253 >gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] Length = 241 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL NIG ARAM L+ L L+NP+ +P ++A + +A +++ +RV + Sbjct: 12 IILSHTSHPGNIGAAARAMKTMGLSSLYLINPKT-FPDKEADVRAVSARDILEKIRVCTT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + A TAR R+ V ++ A L R V ++FG E GLT E Sbjct: 71 LDEALDNTVLTAAMTARPRDLSHDVFNARQGAREL-LRYARQHPVALLFGTETSGLTTAE 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ II P NP F SLN++ AV +M +E + +++ +++ V PA+ EL Sbjct: 130 VSKCQMIIHIPANPEFTSLNLASAVQVMTYE-LRMALIENDEPVPLAGFPASFNELELLY 188 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE + + P +K + ++ + +F R L +EEV +LRGI++ L K Sbjct: 189 AHLEQVMIASDFLDP-QKPRLLMQRIRRLFGRARLEKEEVRILRGILTALGK 239 >gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82] Length = 228 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D VID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPA 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 263 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 14/252 (5%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP L+ I+LV+ NIG ARAM L +L LV P +P +A + + Sbjct: 15 APLAPDLR-------IVLVETSHPGNIGSAARAMKVMGLERLVLVRPHR-FPDAQATALA 66 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A+ +++ V+ +L A+AD +Y TTAR+R+ L + AA + + + V Sbjct: 67 SGAEDLLERAEVYDDLAAALADCRRVYGTTARDRHIAWPQLTARPAAAEIVA-LGASAPV 125 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 I+FG ER GL+N E+ L +I P + SLN++QAV ++ +E + + Sbjct: 126 AILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYELLLAQRETRHPAPS 185 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLL 239 T A + + F +L L + G+ + ++ M+ L +F RP+L EV++L Sbjct: 186 VLETAAPRAAMEGFYGHLAQVLRQAGFLQ-APRETHMMRRLRRLFDRARPDL--NEVYIL 242 Query: 240 RGIVSTLDKFSR 251 RGI++ ++++++ Sbjct: 243 RGILTEVERWAQ 254 >gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] Length = 243 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNATIVKT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + T+AR+R ++ P+E + E+ V I+FGRER GLTNEE Sbjct: 66 LDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQ-SKESPVAIVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKGE 191 + + P NP + SLN++ AV L+ +E + +EKN E P ++ + Sbjct: 125 LQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLSMNEKNTVISADDEVEYPPSE-D 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++K+++ Sbjct: 184 VERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHIETQELHILRGILTSMEKWAK 242 Query: 252 Q 252 + Sbjct: 243 K 243 >gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] Length = 245 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-RPDSQAIALAAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EAIA + T+AR+R+ +L P+E + V I+FGRER GLTN+E Sbjct: 66 FDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRAAQE-SEHAPVAIVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELL 193 + + + P NP + SLN++ AV ++ +E + + V E+ P +L Sbjct: 125 LQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKYPPVGEEAYPLVD-DLE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK+ Sbjct: 184 RFYSHLEQTLHHTGFIRE-KNPGQVMNRLRRLFTRARPEAQELNILRGILASIDKY 238 >gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 155-74] Length = 245 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39] gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39] Length = 246 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLRATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 241 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ + T+AR+R +L P+E V + + V ++FGRER GLTN+E Sbjct: 66 LDQALEGCSLVVGTSARSRTLPWPMLDPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + + ++ P NP + SLN++ AV ++ +E + + K E++ +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQVGKPEHEESPYPLVDDLER 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ RP + + M + L +F R +E+ +LRGI+S++ K Sbjct: 185 FYQHLEETLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237 >gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 228 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 234 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+ Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] Length = 246 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 228 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 4 TIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+ Sbjct: 63 TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 228 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a] gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972] gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073] gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a] gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972] gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli WV_060327] gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 228 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 238 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 13/237 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L QL LV P+ E A + SA A+ V+ ++ ++ Sbjct: 7 IVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPL-DEHAIALSAGAEDVLKQAKIVAS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 EA+AD + T+AR R+ S++ P+E ++ Q V I+FGRER GLTNE Sbjct: 66 FDEAVADCALVIGTSARLRHLQNSLIEPRECGT--RAIAYAKQAPVAIVFGRERIGLTNE 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ ++ P NP + SLN++ AV L+ +E + + +S + + NT T E Sbjct: 124 ELLKCRYHLTIPANPDYSSLNLAMAVQLICYE-LRLAFLSQQAMTESLSTIDNTYPTHTE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F + E G+ + + ++ L ++ R +L + E+ +LRG+++ ++K Sbjct: 183 IEHFFQHTERLYTALGFI----QNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEK 235 >gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 228 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli CFT073] Length = 235 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 12 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 71 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161 >gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 241 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 16/239 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+Q+ LV+P+ P + A + +A A ++ + R+ S Sbjct: 7 IVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQ-AQPDDNAYALAAGASDLLANARIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIAD + T+AR+R +L P+EA L + G V ++FGRER GLTN Sbjct: 66 LDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKL---VTEGMQHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA---TKGE 191 +E+ + ++ P NP + SLN++ AV + +E + + ++ V E + + + Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWL--QQEQVGETDMAVDYPSAEQ 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 L F +LE +L + G+ + +++ L +F RPE + E+ +LRGI++++ K Sbjct: 181 LEGFYQHLEQTLLKTGFIAD-DHPGQVMSKLRRLFNRARPEAV--ELNILRGILTSVQK 236 >gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 15/237 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ NIG ARAM T L LVNPR D ++A + ++ A V+ + R+ Sbjct: 17 VLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDVLANARIVG 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLT 133 +++EA+ D ++ A +AR R V P++ A + N + V ++ G ER+GL Sbjct: 77 SIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAAL----RVALVLGNERFGLP 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189 NE + N +I+ P NP + SLN+ QAV ++ +EC + + +++E V A+ Sbjct: 133 NEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATE--VGFHGDAASL 190 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++ +LE +L + +P + KK++ L +F R L EEV +LRGI + Sbjct: 191 TQVEGMYQHLEQALVAIDFLKP-DSPKKLMPRLKRLFARTGLETEEVNILRGIAKQI 246 >gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] Length = 252 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 22/237 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73 I+LV+PQ N+G VARAM NF L++L LVNP R G P + +A + +A+ V+D Sbjct: 7 IVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVLDRAVA 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 +L EA+ + F+ ATT R R + AP A + + S + V ++FGRE +GL Sbjct: 67 VESLGEALEGVSFVVATTGRPRELYP---APVVTAREVPAHVLSVKGEVALVFGRETFGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPA 187 TNEE+ L++ I + P P PSLN++QAV++ +E + S VS E+ + A Sbjct: 124 TNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQAWLQQGSTVSQEELA---DVAA 180 Query: 188 TKGELLSFLDY-LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +G Y LEI F + + L IF + L EV LLRG++ Sbjct: 181 LEGFFADLGRYVLEIG------FTDEHRHPYAMRRLRRIFHKARLSPGEVQLLRGLL 231 >gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGESEPAPAAATGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247 Query: 252 QSSRRNN 258 + + N Sbjct: 248 LAKQAEN 254 >gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] Length = 257 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTNEE Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + ++ ++E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPVIEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQGKY 243 Query: 253 SSR 255 R Sbjct: 244 PQR 246 >gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 244 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L++L LVNP P +A S +A A VI + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLVK-PDSQAISLAAGASDVISHATIVET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ + T+AR+R +L P+E ++ E V I+FGRER GLTN+E Sbjct: 66 LDQALEGCSLVIGTSARSRTLQWPMLEPRECGVLSAEEARHAP-VAIVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192 + + ++ P NP + SLN++ AV L+ +E ++N + +E+ E++ +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIRVAWLDN--LKAEEPAYEESPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 F +LE +L + G+ R + +++ L +F R +E+ +LRGI+S++ Sbjct: 183 ERFYQHLEQTLLQTGFIRH-SHQGQVMHKLRRLFTRARPESQELNILRGILSSI 235 >gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 241 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+ + T+AR+R +L P+E V + + V ++FGRER GLTN+E Sbjct: 66 FDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193 + + ++ P NP + SLN++ AV ++ +E + + + + +E P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVD-DLE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ RP + + M + L +F R +E+ +LRGI+S++ K Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237 >gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1] Length = 239 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 18/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ NIG ARAM L+ L LV+P+ E++ + +A AD ++ + ++ + Sbjct: 7 IILVETSHSGNIGSAARAMKTMGLSNLYLVSPKS--VDEQSIALAAGADDLVRNAQIVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 ++AI D + T+AR R+ +++ P+E A E+ + GQ V I+FGRER GLTN Sbjct: 65 FEQAIEDCSLVIGTSARLRHLQSTLIEPRECA----EKACAYQGQ-VAIVFGRERVGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKG 190 EE+ + ++ P NP + SLN++ AV L+ +E M + ++ E+ +N T Sbjct: 120 EELLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-MRMAFLAKERTESTLSTIENIYPTAQ 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F + E + G+ + + ++ L ++ R L + E+ +LRG++S ++K Sbjct: 179 EMEYFFAHTEQVYQSLGFI----QNQGVIQKLRRLYNRSSLEKNELNILRGMLSAVEK 232 >gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046] gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B] gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736] gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G] gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D VID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86] gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D VID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] Length = 274 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S Sbjct: 31 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 90 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL NE Sbjct: 91 TLGDALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + +++ + T A E Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPAQQPAADTGTLAQSDE 209 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 210 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 260 >gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 16/179 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDS 70 IILV P EN+G ARAM LR+V+ P GW + ++ ++ + Sbjct: 5 IILVSPARPENVGAAARAMKTMGFASLRIVDSEAHLKPEAGWVAHGSQD-------ILQN 57 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 FS L EA+AD+ F ATTAR+R F P+E + L E+ + ++FGRE Sbjct: 58 ALHFSTLAEALADIDFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDS 117 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTNEE+ L++ + P+ +PSLN+ QAV++ C + S ++ +VK +N A + Sbjct: 118 GLTNEELELADVLTGVPMVADYPSLNLGQAVMVF---CYQLSSLNQVTSVKPENAEAGQ 173 >gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] Length = 257 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + + ++ ++E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAHLDRLQAAAPIIEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243 Query: 253 SSR 255 R Sbjct: 244 PQR 246 >gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 246 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPILDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] Length = 246 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-KHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM 6242] gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242] Length = 231 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 24/239 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P NIG VARAM NF + L LVNP + +AR+ +++A +++S + Sbjct: 7 IILVEPLYQGNIGSVARAMKNFGFSDLILVNPCE--LKMEARAFASHAYDILESAKTVET 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQN--VGIIFGRER 129 ++EA+ + ATT + P++ + FSG + + +IFGRE Sbjct: 65 IEEALEGSDLVIATTGITGMKIDEHIRMPPYTPRDLKVK-----FSGMSGTIAVIFGRED 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 G TNEE+ LS+ I+S P + ++P +N+S AV ++++E + I++ E N+ A Sbjct: 120 HGFTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEM--SQILAGE------NSLADG 171 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L ++++ L++ Y P KK+K IF R +LM EV LRG + + K Sbjct: 172 FDLRLLFEHIDEVLDDIDY--PAHKKEKTHLMFKRIFGRAQLMPREVQTLRGFIGKVQK 228 >gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Glaciecola sp. HTCC2999] Length = 238 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 16/242 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+ L LV+P P K+ + +A A V+ + + S+ Sbjct: 7 IVLVNTSHTGNIGSTARAMKTMGLSDLYLVDPVSA-PDGKSSALAAGAGDVLANATIVSD 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D I T+AR+R +L P+E + + + G V ++FGRE GL+NEE Sbjct: 66 LSEAVKDCSLIVGTSARSRTLPWPMLTPRECGVKMVQEGQKGP-VALVFGRENNGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L + + P NP + SLN++ AV + +E + E + P ++ +L F Sbjct: 125 LQLCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMGYLNLDSYPDMESDYPLSE-DLERFY 183 Query: 197 DYLEISLEERGYF---RP---VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LE +L E G+ P + K +++++ RPE +E+ +LRGI+S +DK + Sbjct: 184 VHLENTLTETGFIVKNHPGVVMTKLRRLVNR-----ARPE--SQELNILRGILSAIDKKN 236 Query: 251 RQ 252 +Q Sbjct: 237 KQ 238 >gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205] gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205] Length = 281 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 132/258 (51%), Gaps = 21/258 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ +++ Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLILVAPK-TYPHPDIDALAAGAQDLIEKIQIVDT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H ++ T+AR+R +L + AA + QN+ I+FGRE GLTNEE Sbjct: 77 LEQAIEDCHLVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFGREDRGLTNEE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186 +AL+N ++ PVNP + LN++QA+ ++ +E ++ +++N +Q P Sbjct: 137 LALANYHLTIPVNPSYGVLNVAQAIQVVCYELRMAALELNQQNT-DQTDPQEHMQLKQNQ 195 Query: 187 --------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 T+ ++ F +LE L E F + + L +F R +L R E L Sbjct: 196 SMQWDEPLVTQKQMEEFYPHLEKMLTEIE-FLDPNNPRLLPLRLRRLFGRIQLDRMEYHL 254 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRGI S + + S ++ Sbjct: 255 LRGIFSRVQALANGSWKK 272 >gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 228 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863] gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509] gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +S Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERAMS 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii ATCC 27126] Length = 254 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ NIG ARAM L+ L LV+P + P +A + +A A V+ + ++ S Sbjct: 7 IILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVN-EPDGQASALAAGAGDVLANAKIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE GLTNEE Sbjct: 66 LEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP + SLN++ AV + +E + E+ P +L F Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYPLND-DLERFY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +LE + R ++ L +F R +E+ +LRGI++++DK Sbjct: 184 THLETTLEGTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDK 234 >gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] Length = 257 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 7/247 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + ++ V+E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243 Query: 253 SSRRNNV 259 R +V Sbjct: 244 PQRGADV 250 >gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 14/243 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG VARAM N LT+L LV P+ +P+ +A +A+A+ V+ + V Sbjct: 8 VVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPK-AFPAPEALWRAASAEDVLANATVVET 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----SGQNVGIIFGRERWGL 132 ++EA+ FI T+AR R + P + A ER++ G+ V I+FGRE GL Sbjct: 67 VEEAVQGAQFIVGTSARERR----IPWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGL 122 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTP-ATK 189 NEE+ L N P + +PSLN++ AV ++ +E + + S ++ +TP A Sbjct: 123 LNEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLAGSSATEEDAAWDTPFAPA 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-TLDK 248 ++ F +LE +L + + P + ++++ L +F R L E+ +LRG++S T K Sbjct: 183 EDMARFYTHLEQTLIDIEFLDP-KAPRQLMRRLKRLFNRVRLDEMELNILRGVLSETQKK 241 Query: 249 FSR 251 SR Sbjct: 242 TSR 244 >gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 12/242 (4%) Query: 10 NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADC 66 N A PV I+L+ P+ EN+G VARAM NF L + + D AR + +A+ Sbjct: 5 NPAAPPVRIVLLRPRNPENLGAVARAMKNFGLADWAIAELGTHD---FATARRVAVHAED 61 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++D R+ L EA+AD ++ T++R R K L+P E A ER +G+ ++FG Sbjct: 62 LLDRPRLVRTLDEAVADCAWVVGTSSR-RVRGKRRLSPAEVAREAMERAPAGRTA-LVFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ER GL N+E+ + + + P + PS+N++QAVLL +E ++ + E Sbjct: 120 DERSGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRRAALATREPAPAAAG-- 177 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT GEL + L +L E G+ ++ + DL S R L R EV L + T+ Sbjct: 178 ATDGELRGLEEMLRAALRETGFL--AGPERHAVRDLLSPLRRARLTRSEVRLWTAALRTM 235 Query: 247 DK 248 + Sbjct: 236 GR 237 >gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGCTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] Length = 244 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNAALVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 + +AI + T+AR+R +L P+E + + +G++ V ++FGRER GLTN Sbjct: 66 VDDAINGCSLVVGTSARSRTLPWPMLEPRECGV---RAVQAGEHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192 +E+ + ++ P NP + SLN++ AV ++ +E + + ++ TP +L Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYELRVAYLDRQQTGGTPQEETPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L+ G+ RP + M L +F R +E+ +LRG++++++K Sbjct: 183 ERFYQHLEQTLQRTGFIRPAHPGQVM-SRLRRLFTRARPEEQELNILRGMLTSIEK 237 >gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606] gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606] gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] Length = 278 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 17/241 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR +A + ++ AD V+ S V Sbjct: 25 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMASGADDVLASAHVVP 84 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R AP+ AA V E+ G+ + ++FG ER GL+NE Sbjct: 85 TLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-IALVFGNERTGLSNE 143 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------- 186 ++ +A+ P NP + SLN++QAV ++ +E + + P Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATTAAHAAPRAAAGPAEP 203 Query: 187 ----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A E+ S +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 204 AGARAASDEIESMFMHLESALVALEFLDPA-NPKKLMSRLRRLFARSGLEREEVNIVRGI 262 Query: 243 V 243 Sbjct: 263 A 263 >gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1] gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88] gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1] gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88] gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli LF82] gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146] gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252] gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6] Length = 261 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + ++D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSSD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103] gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103] gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355] Length = 248 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 13/248 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A S +A A VI ++ + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEAKIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIA + T+AR+R+ +L +E + + I GQ V ++FGRER GLTN Sbjct: 66 LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSIEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190 +E+ + ++ NP + SLN++ AV ++ +E + + E + A+ Sbjct: 123 DELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQAQENQTPKPQYDASPYPLVD 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L F ++E + E G+ R +++ L ++ R R+E+ +LRG++S+ +K Sbjct: 183 DLERFYQHMENMMLESGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFEK-- 239 Query: 251 RQSSRRNN 258 R+ +R + Sbjct: 240 RKGTRTDG 247 >gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] Length = 245 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVT-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89] gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli UTI89] gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 235 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 12 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 71 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161 >gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] Length = 271 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 12/252 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L N+G VARAM N L +L LV+P+ ++A +++ +A ++++ R N Sbjct: 22 IVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTAI-DDQALATAKHAADILNTARQVDN 80 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD ++ATTAR R+ V++ ++AA + +G + I+FG ER GLTN+E Sbjct: 81 LPDALADSVEVWATTARPRDLHLPVMSARDAAETIAASPSTGV-ISIVFGAERTGLTNQE 139 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGELLS 194 I+ + II P NP +P LN+ QAV ++ W + S+ + + AT + + Sbjct: 140 ISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWRMAHGTARSAPQPNIDSTELATTAQWAA 199 Query: 195 FLDYLEISLEERGYFR---PVEK-----KKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 F L L+ +F EK +++++ L + R R E+ +++GIV L Sbjct: 200 FEKRLTEQLDRTSFFHRTGSAEKDIAANRERLMARLRVLCRRANPTRNELAVMQGIVRAL 259 Query: 247 DKFSRQSSRRNN 258 + + S N Sbjct: 260 TESTATQSGANT 271 >gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W] gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301] gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1] gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1] gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017] gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri 2a str. 2457T] gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671] gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71] gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella flexneri 2930-71] Length = 228 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 154 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] Length = 244 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S Sbjct: 1 MLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVS 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ ++FG ER GL NE Sbjct: 61 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANE 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + S + E T A E Sbjct: 120 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPPAEAGTLAQSDE 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRG+ Sbjct: 180 IERMYVHLEHALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 230 >gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15] Length = 246 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLASGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia enterocolitica W22703] Length = 257 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + + + V+E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVSFLDRQQAAAPIVEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243 Query: 253 SSR 255 R Sbjct: 244 PQR 246 >gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 228 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 257 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 21 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 79 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 EAIA + T+AR+R+ +L P+E ++ V I+FGRER GLTN Sbjct: 80 FDEAIAGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGEL 192 EE+ + ++ P NP + SLN++ AV ++ +E + +++ + V E+ +L Sbjct: 137 EELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIRVAHLDRIAAHEPVPEEEPYPLVDDL 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L G+ RP ++ L +F R +E+ +LRGI+++++K Sbjct: 197 ERFYAHLEETLHATGFIRPTH-PGNIMSRLRRLFTRARPEAQELNILRGILASIEK 251 >gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218] Length = 228 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTALAVA 191 >gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] Length = 245 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++++ R+ N Sbjct: 13 VILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILETARIVDN 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+A AT R+ N + +P+ A +L E S + G+IFGRE GLTN+ Sbjct: 73 LTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLGE---SEKPGGLIFGREDRGLTNQ 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 EI + ++ P +P + SLN++ AV + +E + S+++ E AT L S+ Sbjct: 130 EINYAQKLVFIPTSPEYISLNLATAVSICCYE-LSQSLMTMETGKMPTRNIATLDMLESY 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 LE L GY P +M + ++ R EL EV +LRGI+ Sbjct: 189 YQELESLLLSIGYLYPHTASSRM-EKFRHLYNRSELTTTEVAMLRGIL 235 >gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 EDL933] gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046] gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A] gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1] gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9] gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str. EDL933] gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046] gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli] gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1] gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B] gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. G5101] gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. 493-89] gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. H 2687] gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. USDA 5905] gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. LSU-61] gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella sonnei 53G] gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120] gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1044] gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 5216-82] gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] Length = 245 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304] Length = 261 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 246 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905] Length = 245 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANIPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40] gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40] Length = 267 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ NIG ARAM N L +L LV+P+ +P+EKA +A+A V+D V + Sbjct: 12 IVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQ-YPAEKAVWRAASATDVLDDAVVVGS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + T+AR R +L P+E G+ V I+FGRE GLTNEE Sbjct: 71 LDEAIADCTLVVGTSARERRIPWPLLTPRECGDKAWAEAGKGE-VAIVFGREDRGLTNEE 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATKGEL 192 + + + P NP + SLNI+ A+ ++ +E + E + PA + ++ Sbjct: 130 LQKCHYHVHIPSNPDYSSLNIAAAIQVLCYEIRMTHLAEKEGKPIHFDDWDVPPAKQQDM 189 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +LE +L + F + ++ + + +F R + E+ +LRG+++++ Sbjct: 190 EYYYAHLEETLAKLD-FLDLSNPRQTVTRIRRMFNRIRMDEMEISILRGMLTSI 242 >gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739] gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482] Length = 246 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101] gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101] gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] Length = 228 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E] gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E] Length = 244 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 26/244 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM L L LV+P+ G E+A + SA A+ V+ + + Sbjct: 7 LVLVETSHSGNIGSAARAMKTMGLANLYLVSPKQGI-DEQAVALSAGAEDVLRKAVIVKS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA+AD + T+AR R+ +++ P+E + + GQ + I+FGRE++GLTN+E Sbjct: 66 FDEAVADCSLVIGTSARLRHLQSTLIEPRECGKISIQEAHCGQ-IAIVFGREKFGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVW------ECMENSIVSSEKNVKEQN 184 + ++ P NP + SLN++ AV L M W E M +S+ ++K Sbjct: 125 LLKCRYHLNIPANPDYSSLNLAMAVQLVSYELRMAWLNGRQSESMSDSVEIAQK------ 178 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 T EL F + E + G+ + + ++ L ++ R L + E+ +LRG++S Sbjct: 179 --PTALELEYFFAHTEKLYQSLGFI----QNQGVMQKLRHLYNRVNLKKNELNILRGMLS 232 Query: 245 TLDK 248 ++K Sbjct: 233 AVEK 236 >gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] Length = 244 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 3/235 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++LV+P N+G VAR NF + LRLV PR E+A + + V+ + Sbjct: 2 GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L EAI D + A+ R + + +A + E + SG V ++FGRE GL+ Sbjct: 62 FETLLEAIGDCQRVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGREDRGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191 NEE+ LS ++ + +PSLN+S AV +++ + ++ + Q P A + + Sbjct: 122 NEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQRCKLLIRSDHPCPQLEPEAAAQPQ 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 L + + L E G+ P K +M + S+ R + +E+ +LRG+V L Sbjct: 182 LDDCMQDAQELLLEAGFLLPHTAKARMA-KIRSLLQRARIRPQELAMLRGMVRQL 235 >gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073] gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227] gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89] gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401] gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1] gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS] gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5] gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88] gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a] gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989] gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026] gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972] gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952] gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606] gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B] gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354] gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50] gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101] gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736] gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli CFT073] gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227] gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89] gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401] gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1] gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989] gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88] gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a] gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026] gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli LF82] gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972] gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)] gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella flexneri 2002017] gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354] gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101] gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146] gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2a str. 2457T] gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W] gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1] gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 3431] gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83] gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli LT-68] gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli RN587/1] gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520] gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252] gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263] gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489] gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007] gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167] gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86] gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 3594-74] gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88] gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 4343-70] gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-671] gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2747-71] gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71] gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri VA-6] gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-218] gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-272] gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-227] gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-304] Length = 246 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC 51142] Length = 247 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 4/231 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VAR M N L QL LV P S++A+ + + V++ +V Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAKLMAVHGIDVLEKSQVVHT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EA+ H I ATT R+ + + P+EA L F N ++FG E GL NEE Sbjct: 71 IPEALQGCHRIIATTGRSLSLPTHLETPREALPWLLTENF---NTALLFGPEDRGLNNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P N + SLN++QAV + +E + + E + PA+ L + Sbjct: 128 LNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQAAQNPIESKLDPSFEPASFEALEGYY 187 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +LE L + GY P K + L+ ++ + L EEV LLRGI+ +D Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTNEEVALLRGILRQVD 237 >gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] Length = 255 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 9/248 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ VF+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGISRLVLVAPERAL-DEDAYRRSAGAEDVLGDAPVFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P A + V I+FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PATKG 190 L +A + P +P F SLN++ AV ++ +E + + + T PA+ Sbjct: 129 QLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLAQLEAGQAEPAPAATTGALREGPASHA 188 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L L +L++ + + + M L + +R E+ +EV LLRGI+S + + Sbjct: 189 QLEGMFAQLGETLDDIDFHKGRAPESAMR-KLRRLLLRTEMSEQEVRLLRGILSDAQRMA 247 Query: 251 RQSSRRNN 258 + R N Sbjct: 248 MLAKRAGN 255 >gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 254 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + + ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGQAERAPAAAPGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247 Query: 252 QSSRRNN 258 + + N Sbjct: 248 LAKQAGN 254 >gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042] Length = 246 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70] Length = 261 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTALAVA 191 >gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 257 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + ++ V+E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243 Query: 253 SSR 255 R Sbjct: 244 PQR 246 >gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8801] Length = 243 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ + S+ Sbjct: 8 IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ ATT R R + S+ PK A +L + S +IFG E GL+NE Sbjct: 68 LPEALQGCQRAIATTGRPRTS-TSLETPKNALPWLLTPHLTS----ALIFGPEDRGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + P N +PSLN++Q+V + +E + + PA+ L + Sbjct: 123 ELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPQNVPPYPATEPASLDILEGY 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +LE L + GY P KM + ++ R L EEV LLRGIV +D Sbjct: 183 YQHLETFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHIDAL 235 >gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582] gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582] Length = 225 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 7/180 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM + LR+V+ D AR + A ++D+V+ F Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFSSLRIVD-SDAHLQPAARWVAHGAGEILDAVQTFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD+ F ATTAR+R F P+ L+ER ++FGRE GLTNEE Sbjct: 64 LEQALADVDFTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ +S+ +V +P G L L Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQ------LSALMSVAAPPSPTADGGQLQAL 177 >gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A] gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS] gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739] gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042] gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli EC4100B] gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14] gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180] gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520] gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120] gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] Length = 353 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 122/256 (47%), Gaps = 17/256 (6%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 86 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 145 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ S V L +A++ +H+ A TAR R P+ AA + E+ G+ Sbjct: 146 ASGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE- 204 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + + Sbjct: 205 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTMYLSAGSGAA 264 Query: 181 KEQ-------------NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 Q A E+ S +LE +L + P KK++ L +F Sbjct: 265 AAQTAPQAAAGEGEAVGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 323 Query: 228 RPELMREEVFLLRGIV 243 R L REEV ++RGI Sbjct: 324 RSGLEREEVNIVRGIA 339 >gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026] gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026] gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] Length = 256 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 6/242 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VKPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELL 193 + + ++ P NP + SLN++ AV ++ +E + + V+E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAPIVEEEEAPYPLVDDLE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 RFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKYP 243 Query: 254 SR 255 R Sbjct: 244 QR 245 >gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter sp. 1501(2011)] Length = 300 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 1/145 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG ARAM LT L +V+PR E + + +A A V+D+ V + Sbjct: 30 IVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRHPI-DEDSVAHAAGAKSVLDNCTVVDS 88 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD H ++A ++R R+ + V+ P AA ++ R V ++FGRE GLTN+E Sbjct: 89 LEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFGREDRGLTNQE 148 Query: 137 IALSNAIISFPVNPLFPSLNISQAV 161 +A+++ I NP +P LN++ A+ Sbjct: 149 LAMADYHIQIDANPDYPVLNVASAI 173 >gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354] gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli] gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11] gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989] gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9] gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11] gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989] gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010] gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357] gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167] Length = 228 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus taiwanensis LMG 19424] gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 10/236 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG----WPSEKARSSSANADCVIDSVRV 73 +LV+ N+G VARA+ L LV+PR+ P A +S AD V+ + + Sbjct: 26 VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVAMAS--GADDVLAAAVI 83 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A+A A TAR R L P+ AA + + +V +FG ER+GL Sbjct: 84 VDGVDAALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSGDVAFVFGNERYGLP 143 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKG 190 NE + NA+ P NP + SLN++QAV L+ +E + ++ + N+ PAT Sbjct: 144 NEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMRLTLLDAAPDAGANIGYAGEPATAE 203 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++ + +L+ LE G+ P +K++ L + R L REEV +LRGI + Sbjct: 204 QVEAMFGHLQTGLEAIGFLDP-SNPRKLMTRLRRLLARSGLEREEVNILRGIAKHM 258 >gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] Length = 228 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68] Length = 268 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] Length = 228 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli] gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC1212] gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1125] gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1044] Length = 228 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227] Length = 228 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 250 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 21/253 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A S +A A VI ++ + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGDAKIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIA + T+AR+R+ +L +E + + + GQ V ++FGRER GLTN Sbjct: 66 LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191 EE+ + ++ NP + SLN++ AV ++ +E + S +EQ +P K E Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQS-----QEQASPPPKFEESP 177 Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ Sbjct: 178 YPLVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSS 236 Query: 246 LDKFSRQSSRRNN 258 +K + +N Sbjct: 237 FEKRKNEKKEPDN 249 >gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua] gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516] gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F] gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola] gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1] gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92] gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516] gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua] gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92] gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F] gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis IP 31758] gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis Angola] gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis PB1/+] gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004] gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038] gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 257 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 17/248 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK------- 189 + + ++ P NP + SLN++ AV ++ +E + + + ++ N P + Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYE-----VRVAYLDRQQANAPVEEEEEAPYP 179 Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIE 238 Query: 248 KFSRQSSR 255 K + R Sbjct: 239 KQDKYPQR 246 >gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9] gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9] Length = 235 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 12 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 71 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 190 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 191 LLTTLAVA 198 >gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei 91] gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ A +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAVASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII] gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis YPIII] Length = 257 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 17/248 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK------- 189 + + ++ P NP + SLN++ AV ++ +E + + + ++ N P + Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYE-----VRVAYLDRQQANAPVEEEEEAPYP 179 Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIE 238 Query: 248 KFSRQSSR 255 K + R Sbjct: 239 KQDKYPQR 246 >gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 228 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADVLHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] Length = 378 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 30/254 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR +A + ++ AD V+ S V Sbjct: 112 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHVVP 171 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R P+ AA + + G+ + ++FG ER GL+NE Sbjct: 172 TLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 230 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTP-------- 186 ++ +A+ P NP + SLN++QAV ++ +E + S +E N P Sbjct: 231 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAEVNASASRAPQASTGSAA 290 Query: 187 -----------------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 A E+ S +LE +L + P KK++ L +F R Sbjct: 291 SAASTAAAASAEPAGPRAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFARS 349 Query: 230 ELMREEVFLLRGIV 243 L REEV ++RGI Sbjct: 350 GLEREEVNIVRGIA 363 >gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1180] Length = 245 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFSRARPESQELNILRGILASIEQ 238 >gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863] gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509] gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227] gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli STEC_7v] Length = 246 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272] Length = 261 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z] gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus succinogenes 130Z] Length = 249 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 18/242 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM LT L LV P+ ++ A + SA A+ VI + + + Sbjct: 7 IVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSRIDAQ-AVALSAGAEDVIKNAVLVPS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA+AD + T+AR R+ S++ P+E E + I+FGRER GLTN+E Sbjct: 66 FDEAVADCSLVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---------CMENSIVSSEKNVKEQNTP- 186 + ++ P NP + SLN++ AV L+ +E M S++ +N+ + +P Sbjct: 126 LLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLKVRTMPFSVI---ENMNQMPSPL 182 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT EL F ++LE + + + + ++ L ++ R ++ + E+ +LRG++S + Sbjct: 183 ATARELEYFYEHLERLYTQLNFI----QNQSVMHKLRRLYQRADIEKNELNILRGMLSAV 238 Query: 247 DK 248 +K Sbjct: 239 EK 240 >gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] Length = 228 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D VID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] Length = 233 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM ++R+V+ AR + + ++D V VF Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRMRIVDS-TAHLEPAARWVAHGSGDILDGVDVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE Sbjct: 64 LADALADIEFTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 +AL++ + P+ +PSLN+ QAV++ ++ + S + V + T A G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVVAAEPTQAEFGQLAAL 177 >gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] Length = 246 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + V+ TP + Sbjct: 123 EELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60] Length = 245 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 +AIA + T+AR+R+ +L P+E ++ V I+FGRER GLTN Sbjct: 66 FDDAIAGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191 +E+ + + P NP + SLN++ AV ++ +E + + V+E P + Sbjct: 123 DELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLAD-D 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK Sbjct: 182 LERFYAHLEQTLHHTGFIRE-KNPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237 >gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] Length = 228 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL+ P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILIAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] Length = 243 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ + S+ Sbjct: 8 IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ ATT R R + S+ PK A +L + S +IFG E GL+NE Sbjct: 68 LPEALQGCQRAIATTGRPRTS-TSLETPKNALPWLLTPHLTS----ALIFGPEDRGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + P N +PSLN++Q+V + +E + + PA+ L + Sbjct: 123 ELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPHNVPPYPATEPASLDILEGY 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +LE L + GY P KM + ++ R L EEV LLRGIV +D Sbjct: 183 YQHLESFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHIDAL 235 >gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli] gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str. 493-89] Length = 228 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQVHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5] gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] Length = 228 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + ++D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSSD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] Length = 314 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 11/239 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFS 75 +LV+ N+G VARA+ L LV+PR+ E A + ++ AD V+ + Sbjct: 52 VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVREHPDAVAMASGADDVLAGAVIVD 111 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLT 133 +++ A+ A TAR R L P++AA E + + G + +FG ER+GL Sbjct: 112 SIEAALEGATQTVAMTARQREFGPPRLLPRDAAARGAESLAARAGDEIAFVFGNERYGLP 171 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC------MENSIVSSEKNVKEQNTPA 187 N+ + A+ P NP++ SLN++QAV L+ +E + N+ PA Sbjct: 172 NDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMRLALLDRAQAAPDDSGNIGYAGEPA 231 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 T ++ S +L+ LE G+ P +K++ L + R L REEV +LRGI + Sbjct: 232 TAEQVESMFGHLQQGLEAIGFLDPA-NPRKLMTRLRRLLARAGLEREEVNILRGIAKHM 289 >gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus maricopensis DSM 21211] Length = 261 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 13/241 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ N+G ARAM N ++LRLV PR S +AR+ + +A ++++ RV+ Sbjct: 4 AVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVYG 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD T+AR R++ L P L + + ++FG E GL+++ Sbjct: 64 TLAEALADRDVAVGTSARERSD----LPPPRTPATLRPMVRAAARPALVFGPEETGLSSD 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ L A + P + SLN++QAVLL+ +E ++ + V + A + E Sbjct: 120 DLQLCQATVRIPTGE-YASLNLAQAVLLVCYEFLQG----GDDTVVARKV-ADRAEYEGM 173 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLY-SIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 +L ++ E GY V + M L+ + R +L EV L+RG++ +RQ Sbjct: 174 YAHLYTTMLEVGYTDDVRGRHTM--RLWRAALDRAQLSTPEVRLVRGLLQQARWAARQPD 231 Query: 255 R 255 R Sbjct: 232 R 232 >gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] Length = 246 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 I+L + EN+G ARAM N L LV P W EKAR ++ +++ + Sbjct: 7 IVLFGTKFPENVGSSARAMTNMGCENLTLVRPAS-WDMEKARPLATVKGRDIVEKALIAD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D +Y TTAR K V+ P AA ++ E++ +G+ V ++FG E GLTN+ Sbjct: 66 ELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDRGLTND 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E L + +I+ P + SLN+SQAVL++++EC +N++ Sbjct: 126 ETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKNAL 163 >gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1] Length = 228 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39] gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952] gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655] gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39] gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952] gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1] Length = 228 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197] gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] Length = 228 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E + D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] Length = 235 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D +ID+++VF Sbjct: 12 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 71 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161 >gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] Length = 276 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR + +A + ++ AD V+ SV V Sbjct: 25 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAMASGADDVLASVHVVP 84 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L +A+A +H+ A TAR R P+ AA + G+ + ++FG ER GL+NE Sbjct: 85 SLADALAGVHWSIALTARLREYGPPQWTPRAAAAAAHAEALHGE-IALVFGNERTGLSNE 143 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------- 186 ++ +AI P NP + SLN++QAV ++ +E + + + +++ P Sbjct: 144 DVERCSAIAHIPANPAYSSLNLAQAVQVLAYE-LRTAYLGTDQTTDGAPAPGARIAPAES 202 Query: 187 -------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 A E+ S +LE +L + P KK++ L +F R L REEV ++ Sbjct: 203 AGTRAQMAASDEIESMFVHLESALVALEFLDP-SNPKKLMSRLRRLFARSGLEREEVNIV 261 Query: 240 RGIV 243 RGI Sbjct: 262 RGIA 265 >gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297] gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297] Length = 254 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 14/244 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L LV P+ +PS+ A + ++ A +++ V Sbjct: 16 VVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKT-FPSDDAIAMASGATDILEQAVVVET 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPK---EAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+EA+AD F+ +AR+RN ++ P+ E A+ L + V ++ GRER GLT Sbjct: 75 LEEAVADCGFVVGASARSRNLPWPLVHPRQMAEQALALPDNT----RVALVLGRERSGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTPAT 188 N+E+A + ++ P NP + SLN++ AV ++ +E ++++S+ + V+ PAT Sbjct: 131 NDELARCHCHVNIPANPDYSSLNVAAAVQVLCYELRMSAVLSTGEETPLWGVEWDQPPAT 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 G + S + E L + + P + ++ + + + + E +LRG++S + K Sbjct: 191 AGAMESLFAHWERVLVDIDFLDPT-NPRTLMSKIRRLMAKAQPDEVEANILRGMLSHVQK 249 Query: 249 FSRQ 252 R+ Sbjct: 250 HLRK 253 >gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] Length = 228 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PS N+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSFNLGQAVMVYCYQ 154 >gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 241 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + + V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEAEQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192 +E+ + ++ NP + SLN++ AV ++ +E + + EK KE+ +L Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKVAEPKEETAYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L G+ R + M + L +F R +E+ +LRGI++++++ +++ Sbjct: 183 ERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQKNKE 241 >gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] Length = 206 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] Length = 263 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 29 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 87 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A + T+AR+R +L P+E + ++E + + V ++FGRER GLTN+ Sbjct: 88 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAVQA--PVALVFGRERVGLTND 145 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKGEL 192 E+ + ++ NP + SLN++ AV ++ +E + + EK +E+ +L Sbjct: 146 ELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKARTEPQEEKAYPLVDDL 205 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++++ Sbjct: 206 ERFYGHLEQTLLSTGFIRQ-DHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 260 >gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327] gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + + + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQAEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 17 IILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P LGE N+G VAR NF + QLRLV+PR + + ++++ ++ S Sbjct: 10 VVLVEP-LGEINLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDLLENAQIHS 68 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL EAI D + AT R ++ + L E A+ + S + IIFGRE GL+N+ Sbjct: 69 NLLEAIDDCVRVVATCGR-IDHGEIPLHSSETALNWLLQGSSKDPIAIIFGREDRGLSNQ 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELL 193 E+ L+ +I+ P + +PSLN+S AV +++ + + S S KN KE ++ +T EL Sbjct: 128 ELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQKYEYSIKN-KELHSLSTPKELS 186 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + LD E L E G+ K +M + + R E+ EEV L+RGI+ Sbjct: 187 NCLDQTEDFLLEIGFLHKHTSKSRM-SKIKGLLQRAEVRSEEVALIRGIL 235 >gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli EPECa14] Length = 245 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 EE+ + ++ NP + SLN++ A ++ +E + + E + V+ + TP + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] Length = 254 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 6/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG VARAM L +L LV P + +P E+A + A V++S V Sbjct: 8 IVLVEPSHPGNIGAVARAMKTMGLGRLVLVAP-EQFPHEEATWRAVWARDVLESAVVVDT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIA+ F+ T AR++ VL P+ +A+ ++ G+ V I+FGRE GL+NEE Sbjct: 67 LDEAIAECGFVVGTCARDQRLPWPVLDPRRSALEVSANSRRGE-VAILFGREDNGLSNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTP-ATKGELL 193 + N ++ P + + SLN++ AV ++ +E + N + + E + P A++ + Sbjct: 126 LMRCNLHLAIPTSDAYSSLNLAMAVQIVCYELHMLANGDALPQTSNAEWDEPLASQENIE 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L + G+ P +K++ L ++ R + E+ +LRGI++ K Sbjct: 186 RFYVHLEETLSQIGFLNPA-APRKLMPRLRRLYNRLGMDEMELNILRGILTETQK 239 >gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 4/241 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VAR M N +L QL LV P E+AR + + V++ +V Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEARLMAVHGIDVLEKSQVVDT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +A+ H I ATT R+ + + P+ A L + N +IFG E GL NEE Sbjct: 71 IPQALQGCHRIIATTGRSLSLPTHLETPRNALPWL---LTDDLNTALIFGPEDRGLNNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + + P N + SLN++QAV + +E + + E PA L + Sbjct: 128 LSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQVAQNPLENTSNPSFDPAAFEALEGYY 187 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 +LE L + GY P K + L+ ++ + L EEV LLRGI+ +D + S + Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTTEEVALLRGILRQVDWACQDFSSK 246 Query: 257 N 257 N Sbjct: 247 N 247 >gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 3431] gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM + LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1001] Length = 277 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 17/241 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR +A + ++ AD V+ S + Sbjct: 25 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHIVP 84 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R P+ AA + + G+ + ++FG ER GL+NE Sbjct: 85 TLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 143 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-------------EKNVKE 182 ++ +A+ P NP + SLN++QAV ++ +E + S + Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAKANAPANPAPQAAAPAEP 203 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A E+ S +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 204 SGPRAASDEIESMFSHLERALVALEFLDPA-NPKKLMSRLRRLFARSGLEREEVNIVRGI 262 Query: 243 V 243 Sbjct: 263 A 263 >gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] Length = 248 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+ + T+AR+R +L P+E + + Q+ V ++FGRER GLTN Sbjct: 66 LDQALEGCGLVVGTSARSRTLPWPMLEPRECGV---RSVQEAQHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192 EE+ + ++ P NP + SLN++ AV ++ +E + ++ E++ +L Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQRGEPAHEESPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K Sbjct: 183 ERFYQHLEETLLHTGFIRQ-PHQGQVMNKLRRLFTRARPENQELNILRGILSAITK 237 >gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum STM815] Length = 276 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV+PR D +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVKNDPEAIAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ + A TAR R LAP+ AA E G ++ ++FG ER GL+N+ Sbjct: 93 TLADALSGASWSLALTARAREYGPPQLAPRAAATQAREHAAHG-DIALVFGNERTGLSND 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKGEL 192 ++ +A+ P NP + SLN+SQA+ ++ +E +V +++ A E+ Sbjct: 152 DVERCSALAHIPANPAYSSLNLSQAIQVLSYELRMAYLVEGDTADPASGSAGALAASDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMYVHLENALIALDFLDP-GNPKKLMSRLRRLFARSGLEREEVNIVRGIA 261 >gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 226 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 3/153 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + ILV P GEN+G ARAM ++LR+V D SE+A + + +++ F+ Sbjct: 5 IFILVSPARGENVGAAARAMKTMGFSRLRVVGS-DAHKSEQASWVAHGSGTILEEAESFA 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD+ ATTAR R + + + P EAA + S V ++FG E GL+NE Sbjct: 64 TLAEALADVDLSLATTARRRGDKRRLHTPAEAAQQVRALGNSVNTVAVVFGCEESGLSNE 123 Query: 136 EIALSNAIISFP-VNPLFPSLNISQAVLLMVWE 167 ++AL + + + P VNP +PSLN+ QA++L +E Sbjct: 124 DLALVDLLTTIPLVNP-YPSLNLGQAIMLYAYE 155 >gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T] gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV + ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVKVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia MC0-3] Length = 289 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ ++FG ER GL NE Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGAG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + S + E T A E Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSDE 224 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275 >gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] Length = 227 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 7/154 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ G N+G +AR M NF+ +LR+V ++ E A + +A ++++ + + Sbjct: 4 VVLVNPKYGGNVGSIARVMMNFDFKELRIVGSKEILNKE-AYMMAVHAKDILNNAKFYDT 62 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +EAI DL F+ AT+ +RN + + PKE A+ L E G NVGI+FGRE GLT Sbjct: 63 FEEAIKDLDFVIATSGARGGDRNLKRVPITPKELALQLLE--IEG-NVGIVFGREDDGLT 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NEE+ + ++S P + L+P +N+S AV ++++E Sbjct: 120 NEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYE 153 >gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804] gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii] Length = 255 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 14/242 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+V P N+G ARA+ L LV PR D +A + ++ A V++ RV + Sbjct: 11 IMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVCA 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R+ ++AA + ++ + + + ++ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTP-- 186 N +IAL I P NP + SLN++QA+ L WE N + +Q P Sbjct: 131 NAQIALCQRICHIPANPEYSSLNVAQALQLAAWELRYALLRANGATLLPASTAQQPDPGA 190 Query: 187 --ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT + +FL + + +L + P KK++ + +F R L R+E+ +LRG+ + Sbjct: 191 ALATSEAVQAFLAHWQEALVHVQFLDPAH-PKKLMPRMRHLFSRSALTRDEIDMLRGVCT 249 Query: 245 TL 246 + Sbjct: 250 AM 251 >gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 10/239 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+QL LV+P P KA + +A A V+ + ++ S Sbjct: 7 IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVS-PPDGKASALAAGAGDVLANAKIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 L EA+AD + T+AR+R +L P+ E++ S V ++FGRE GL+ Sbjct: 66 LAEAVADCGLVVGTSARSRTLSWPMLEPRGCG----EKLVSEVPKYPVALVFGRENNGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + + P NP + SLN++ AV + +E + + + ++ P + +L Sbjct: 122 NDELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRRESVQEEYPLAE-DLE 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L + + P + ++ L +F R +E+ +LRGI+++++K S++ Sbjct: 181 GFYSHLEQTLFKTNFIIP-KHPGMVMTKLRRLFNRARPETQELNILRGILASIEKTSKE 238 >gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1] gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32] gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. W3-18-1] gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens CN-32] gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens 200] Length = 241 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L L PR P ++ + +A A ++ + + Sbjct: 7 VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGQSIALAAGASDILKHLVKVDS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + AT+AR+R +L P+EA L +G V I+FGRE GL+NEE Sbjct: 66 LAEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTESVTGP-VAIVFGRENHGLSNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ P NP + SLN++QAV ++ +E + E + P + F Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAGIESAQEPTEYPLAADQ-ERFF 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 184 VHLENTLFSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234 >gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] Length = 293 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ + +F L Sbjct: 49 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGNAPLFDTL 107 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 108 SEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 167 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + ++ PA+ + Sbjct: 168 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGGAEPVPAAASGLRDGPASHAQ 227 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 228 LEGMFGQLGETLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 286 Query: 252 QSSRRNN 258 + R N Sbjct: 287 LAKRAGN 293 >gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] Length = 289 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 46 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ ++FG ER GL NE Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANE 164 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + S + E T A E Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEVGTLAQSDE 224 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275 >gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581] gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581] Length = 244 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 9/225 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM LT L LVNPR +P +A +A A+ V+D RV ++ Sbjct: 7 IVLVQTYHPGNIGASARAMKTMGLTDLVLVNPR-CFPDPEASRLAAGAEDVVDQARVVTS 65 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD + +AR R+ P E A L + V ++FGRER+GLTN+ Sbjct: 66 LSEAVADCVQVVGASARLRSYPLPHYDEPAEMATSLVDNAREAP-VALVFGRERFGLTND 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---ENSIVSSEKNVKEQNTP-ATKGE 191 EI + +S P NP + LN+SQAV ++ +E S ++ + + P T+ + Sbjct: 125 EIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRLPDSDYQHPRHASVPLPTRQQ 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 L F D+L ++ G+ + + + L ++F R + R ++ Sbjct: 185 LGHFHDHLSRVMQASGFI--TQPHARTEEQLRALFDRAQPTRRDI 227 >gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895] Length = 228 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM +R+V+ + + +AD +ID++ V+ Sbjct: 5 IILVAPARAENIGAAARAMKTMGFGDMRIVDSQAHLEPATRWVAHGSAD-IIDNISVYPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAEALHDVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] Length = 251 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 132/245 (53%), Gaps = 9/245 (3%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K I+L +PQ+ ENIG ARAM N L +L +V P+ + ++A A +IDS+ Sbjct: 8 KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPKSLAQEKIYPMATAGARHLIDSME 67 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWG 131 V +LK A+ + +++ TTAR ++ K++ AA +++ +G+N V ++FGRE G Sbjct: 68 VVDDLKTALKEFNWVVGTTARLGSHRKAMTVENMAAKLIS---MTGENRVALVFGREDRG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+ E++ L + +++ F SLN++QAVLL+ +E + S+K + A K + Sbjct: 125 LSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFK---AGSDKPRESTPKLANKFD 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + D L L + P E + +D++ F R L +V ++RGI +D ++ Sbjct: 181 LEAMYDQLSELLVRIDFINP-ENPEHWMDNIRRFFTRHPLTARDVKIVRGICRQVDWYTE 239 Query: 252 QSSRR 256 + ++ Sbjct: 240 RRFKK 244 >gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEATNSPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190 EE+ + ++ NP + SLN++ AV ++ +E + + E + +E P Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQESDKTIDYEEAEYPLVD- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R + M + L +F R +E+ +LRGI++++++ Sbjct: 182 DLERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] Length = 243 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEATNSPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191 EE+ + ++ NP + SLN++ AV ++ +E + + E + + A + Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R + M + L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 242 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 130/241 (53%), Gaps = 10/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+A + T+AR+R +L P+E + + + ++ V ++FGRER GLTN Sbjct: 66 LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAEHAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TP-ATKGE 191 +E+ N ++ NP + SLN++ AV ++ +E + + E K ++ TP + Sbjct: 123 DELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQENGDKAEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ ++ Sbjct: 183 LERFYGHLEQTLLATGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGILASIEQKNK 241 Query: 252 Q 252 + Sbjct: 242 E 242 >gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15] Length = 259 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ R Sbjct: 1 MLVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADAR 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V + EA+A + A TAR R + P+ AA + + + G V +FG ER+G Sbjct: 61 VVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185 L NE + + + P NP + SLN+SQAV L+ +E + + V Sbjct: 121 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAETGTGDTRVDGVGFVGE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 181 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMSRLRRLFARTQLEAEEVNILRGIAKR 239 Query: 246 L 246 + Sbjct: 240 M 240 >gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 265 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 7/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARAM +++L LVNP+ +P ++A + +A AD ++ +V + Sbjct: 19 IVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPKR-FPDDEAVARAAGADDILGQAQVCTT 77 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD ++ A +AR+RN L ++AA+ L R +G+ V ++FG E GL+N E Sbjct: 78 LDAALADTVWVCAVSARHRNLGPPALPARQAAVDLVARAGAGE-VALLFGNETAGLSNAE 136 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGEL 192 + + P +P + SLN++ AV L+ +E + S V + PA ++ Sbjct: 137 VQRCRQTVFIPADPGYTSLNLAAAVQLLCYELRLAAFAGSPPVVTRTMPFASPPAVHQDV 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + P E+ +++L L +F R EL +E+ +LRG++ +++ Sbjct: 197 ERFYAHLERVMVASDFLDP-ERPRRLLPKLRRLFGRTELESDEINILRGLLDAVER 251 >gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] Length = 241 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ + S+ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSI-DEQALALAAGASDIAENATIVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+AD + ++AR+R +L P+E + + GQN V ++FGRER GLTN Sbjct: 66 LAEAVADCALVVGSSARSRTLEWPMLEPRECG---QKFVEEGQNAPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192 +E+ + + P NP + SLN++ AV + +E + ++ +EQ+ EL Sbjct: 123 DELQTCHFHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLEKEQQQYTPQEQSEYPRHKEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + F E+ K+++ L +F R +E+ +LRGI+++++K Sbjct: 183 ELFFEHLE-KVAVSTQFISEEQPGKVMNKLRRLFNRARPEAQELNILRGILTSIEK 237 >gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 4/233 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM L+ L LVNP P K S +A A +I+ + Sbjct: 10 IVLVETSHPGNIGSVARAMKTMGLSDLYLVNPSKK-PDAKTISLAAGAADLIERSTLVDT 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+A+ + + +AR+R + PK+ A+ + SG V ++FG ER GL+N E Sbjct: 69 LDTALAECNLVIGASARSRTLSWPEIDPKQCALYSLHQAESGP-VALVFGCERTGLSNLE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATKGELLSF 195 + + + P NP + SLN++ AV ++ +E + S SE + + EL F Sbjct: 128 LQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIRLAYLKSASESQISKIPNYPLVNELECF 187 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE L G+ P + ++M+ L +F R L +E+ +LRGI++ + K Sbjct: 188 YQHLEEVLLHVGFIHPA-RPRQMMHQLRRLFTRARLENKELNILRGILTCIKK 239 >gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] Length = 286 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD-GWPSE-KARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR+ G S A + ++ AD V+ R Sbjct: 29 VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPGAQSHPDAVAMASGADDVLAGAR 88 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V + EA+A + A TAR R + P+ AA + + S G V +FG ER+G Sbjct: 89 VVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLASPGATVAFVFGNERFG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185 L NE + + + P NP + SLN+SQAV L+ +E + + V Sbjct: 149 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGVGFVGE 208 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE +L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 209 PATAEQIDGMFAHLERALVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267 Query: 246 L 246 + Sbjct: 268 M 268 >gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 247 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 18/239 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LVD Q G NIG RAM +T+L LV R+ + + R+ + +A V D+ + F Sbjct: 12 IVLVDTQDGANIGSTCRAMKTMGITRLVLVGERE-YDENRVRTLALHASDVWDNAKRFPT 70 Query: 77 LKEAIADLHFIYATTARNRNNFK--SVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLT 133 LKEA+A A T R R F+ S L+P + A + + +GQ V I+FGRE GLT Sbjct: 71 LKEALAQSVLSVAAT-RRRGKFRKNSALSPLQLASTIQQ---TGQGLVSIVFGRESDGLT 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL- 192 ++E+A + +++ P + FPSLN+SQAV ++ + ++ + K + P T+ Sbjct: 127 DDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTF-----TLFDTIKTYPVEANPVTQDRCE 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + L E +L+E GYF+ ++K L F+R L E+ + +V K SR Sbjct: 182 KAALASCE-ALDEIGYFKLAQEKLWTFRFLRDTFVRAGLTESEI---QKMVKVFVKMSR 236 >gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F + E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703] gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 232 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 7/180 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM LR+V+ + AR + + +++ + FS+ Sbjct: 5 IILVAPARAENVGAAARAMKTMGFECLRIVDSQ-AHREPAARWVAHGSSDILERAQTFSS 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P++ V+ E+ ++V ++FGRE GLTNEE Sbjct: 64 LADALVDVDFTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ +SS V PA LS L Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ------LSSLMQVTAGAAPAADSGQLSAL 177 >gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNASIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A + T+AR+R +L P+E + ++E + V I+FGRER GLTN+ Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATHA--PVAIVFGRERVGLTND 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTP-ATKGE 191 E+ + ++ NP + SLN++ AV ++ +E + S + E+ TP + Sbjct: 124 ELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLASQDAQTPAPGEEETPYPLVDD 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L F +LE L G+ RP ++++ L +F R +E+ +LRG++++++ Sbjct: 184 LERFYGHLEQVLLSTGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLASIE 238 >gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GL NEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLANEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146] gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 245 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-RPDSQAIALSAGASDVIGNATIVGS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 +AI + T+AR+R+ +L P+E ++ V I+FGRER GLTN Sbjct: 66 FDDAIVGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191 +E+ + + P NP + SLN++ AV ++ +E + + V+E P + Sbjct: 123 DELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLAD-D 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK Sbjct: 182 LERFYAHLEQTLHHTGFIRE-KSPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237 >gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ + + + D +ID++ VF Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTA +R F +P E +L E+ ++ ++FGRE GLTN+E Sbjct: 64 LADALHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM 1279] gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM 1279] Length = 257 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 14/251 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--------SANADCVI 68 I+LV Q NIG ARAM NF ++ L LV P + AR + +A+ V+ Sbjct: 9 IVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPGGSLAYRLAVHAEDVL 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGR 127 D +RV L EA+AD + TT R R + V+ P+ A+ + + G+ V ++FGR Sbjct: 69 DRMRVVDTLPEAVADARLVVGTTVREREIYTGPVVGPRPMALRVAQVAPRGR-VAVVFGR 127 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GLT +EI LS I+ P +P PSLN++QAVLL+ C E V+ E A Sbjct: 128 ETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLL---CYEIFGVAQAPPPPEPLQLA 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ L D L+ + G F ++ + + + L EV LLRG + Sbjct: 185 SQAALQQLFDDLKEYILRIG-FTDEKRLPYAVRRFRRLLHKARLTPGEVQLLRGFLHQSR 243 Query: 248 KFSRQSSRRNN 258 +++ R+ + Sbjct: 244 WYAQHGRRKTD 254 >gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] Length = 257 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 7/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAHEAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + ++ ++E+ P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQATAPAIEEEEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 239 >gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247 Query: 252 QSSRRNN 258 + + N Sbjct: 248 LARQAGN 254 >gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis JLW8] Length = 247 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 13/233 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L NIG ARAM L L LVNP +P +A S + A ++++ V S+ Sbjct: 12 VVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPLH-FPDPQATSLATGAADLLETATVCSS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 L+EA+ +AR R ++ +EAA R S Q + ++FG E GL+ Sbjct: 71 LQEALTGCVLAIGMSARKRQISHELVNVREAA----HRAASLAQNQPIALVFGTEMSGLS 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191 N E+ + P NP + SLN++ AV +M +E + +I+ + E N P AT Sbjct: 127 NAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYE-IRMAILEGKLEAAE-NPPELATNEA 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 L F +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++ Sbjct: 185 LEGFYGHLEETLVKIGYLNPT-APKKLSERIRRIYARAKLEKEEVNLLRGILT 236 >gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 287 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD-GWPSE-KARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR+ G S A + ++ AD V+ R Sbjct: 29 VLVETSHPGNVGSTARALKTMGFCESGSYVLVRPREPGAQSHPDAVAMASGADDVLADAR 88 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A + A TAR R + P+ AA + + + G V +FG ER+G Sbjct: 89 VVDDVGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185 L NE + + + P NP + SLN+SQAV L+ +E + + V Sbjct: 149 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGVGFVGE 208 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267 Query: 246 L 246 + Sbjct: 268 M 268 >gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAVGEAEPAPAAASGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247 Query: 252 QSSRRNN 258 + + N Sbjct: 248 LARQAGN 254 >gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] Length = 257 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 7/246 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM L+ L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + + T+AR+R +L P+E V + R V ++FGRER GLTNEE Sbjct: 66 LDEALAGCNLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192 + + ++ P NP + SLN++ AV ++ +E + ++ V+E P +L Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLDRQQAAAPLVEEVEAPYPLVDDL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ R +++ L +F R +E+ +LRG++++++K + Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKC 243 Query: 253 SSRRNN 258 R + Sbjct: 244 PPRATD 249 >gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 228 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T++R+V+ R + D +++++ ++ Sbjct: 5 IVLVSPARAENIGAAARAMKTMGFTEMRIVDSVAHREPGAQRVAHGAGD-ILENITTWAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P+E +L E+ Q+ ++FGRE GLTN+E Sbjct: 64 LAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247 Query: 252 QSSRRNN 258 + + N Sbjct: 248 LARQAGN 254 >gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 254 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGEAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246 >gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L++L LV+P S+ A + +A A V+ + + Sbjct: 8 IVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSQ-ASALAAGATDVLGNAVIVGT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++EAIAD T+AR+R ++ P+E L +G V ++FGRE GLTNEE Sbjct: 67 VEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAVNGP-VALVFGRENSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194 + L N + P NP + SLN++ AV + +E + K V+E + P++K L Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLSYETRMAFLNQQPKKVEEDDAVYPSSKQTEL- 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE +L + G+ + ++ L +F R E+ +LRGI+++++K Sbjct: 185 FYEHLEETLFKTGFIIK-QHPGLVMTKLRRLFNRAHPEDAEMNILRGILTSINK 237 >gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.] Length = 256 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 8/242 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVF 74 I++V P+ ENIG ARAM N + L +V+P + + EK R + + VID +++F Sbjct: 10 TIVMVRPRFPENIGSSARAMLNMGIRNLVVVSP-ENYDLEKIRKLGTHFSSDVIDGIQLF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NLKEA+A +++ TTAR + P A L + + + I+FG E GL N Sbjct: 69 ENLKEALASYNYVVGTTARLGGERAILSTPSGMAERLAD-LSQNNKIAILFGSEDRGLVN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+I L + +I+ P + F SLN+SQAVLL+ C E + E+ K A++ EL Sbjct: 128 EDIRLCHELINIPSSD-FSSLNVSQAVLLV---CYELFLAGIEEKTKYSPRLASRHELDG 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + ++ L Y E ++ L F R +L EV ++RGI +D + + S Sbjct: 184 MYEQVKDILVRIDYINN-ENPDYWMNKLRHYFTRLKLRAGEVSIIRGICRQIDWYGKSSY 242 Query: 255 RR 256 ++ Sbjct: 243 KK 244 >gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 228 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM + LR+V+ + + R + + ++D+ + F+ Sbjct: 5 IVLVAPARPENIGAAARAMKTMGFSSLRIVDSQ-AYLEPATRWVAHGSGDILDNAQHFNT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD+ F ATTAR+R + +P+E +L E+ + I+FGRE GL+NEE Sbjct: 64 LEAALADVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVFCYQ 154 >gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032] gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter turicensis z3032] Length = 239 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 5/186 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M PY ++ + P IILV P EN+G ARAM T+LR+V AR Sbjct: 1 MYPYHRITESLMRLP-IILVSPARPENVGAAARAMKTMGFTELRIVESA-AHLDPAARRV 58 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + A ++D+ + + L A+ D+ F ATTAR+R F P++ +L E+ Sbjct: 59 AHGAGDILDNTKRYDTLAAALEDVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPV 118 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSE 177 ++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++ M+N+ ++ Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLTALMQNTPTAAP 178 Query: 178 KNVKEQ 183 + ++Q Sbjct: 179 QADQQQ 184 >gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 304 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 60 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 118 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 119 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 178 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 179 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQ 238 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 239 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 297 Query: 252 QSSRRNN 258 + + N Sbjct: 298 LARQAEN 304 >gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 286 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 32/270 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL++ N+G ARAM L LV PR WP+ E+ ++ A V+D R+ Sbjct: 13 ILINTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLDKCRI 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------------AAIVLNERI 115 L EA+ + + AT R+ P+E A +++E Sbjct: 71 VETLDEALDGITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAHIPSAPGADLMSESS 130 Query: 116 FSGQ-NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 GQ +G +FG ER+G+ NE++ + +S P NP F SLNI A+ ++ +E + Sbjct: 131 PKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEW---RLA 187 Query: 175 SSEKNVKEQNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 V TP A ++ L +LE SL G+ P KK++ L ++F R ++ Sbjct: 188 LGGFGVHAATTPSHLADAAQVTGMLTHLEQSLVHLGFLDPA-SPKKLMPRLNALFNRAQV 246 Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261 +EE+ +LRGI + + QS R+ L+ Sbjct: 247 TQEEIHILRGIAKAILQQGPQSPARSADLV 276 >gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933] gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 228 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P ENIG ARAM ++LR+V+ + + + D +ID+++VF Sbjct: 5 IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN QAV + ++ Sbjct: 124 LALADVLTGVPMVADYPSLNXGQAVXVYCYQ 154 >gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein [Achromobacter xylosoxidans A8] Length = 263 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 22/256 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+V+P N+G ARA+ ++L LV P+ D +A + ++ A V+++ R+ Sbjct: 11 IMVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTSQPEAVALASGALDVLENARIHD 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----GIIFGRERWG 131 +L+EA+A + +A TAR R+ ++AA + R G+ ++ G ER G Sbjct: 71 SLEEALAPVTMAFALTARVRDLGPPPCDIRQAAEL--ARAHLGETAEGVAAVVLGTERAG 128 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---------SSEKNVKE 182 LTN +IAL + I P NP + SLN++QA+ L WE +V S+ + Sbjct: 129 LTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQEAPR 188 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PA+ + +FL + E +L + P KK++ + +F R L R+EV ++RG+ Sbjct: 189 GAAPASSEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRHALSRDEVDMMRGV 247 Query: 243 VSTLDKFSRQSSRRNN 258 + + ++RRN Sbjct: 248 CTAM----LATARRNG 259 >gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGEAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246 >gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 243 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIRE-SHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-3-3Ab] Length = 269 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 18/248 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P N+G +AR M N L Q LV+P+ +A + + +A ++ R Sbjct: 17 LVLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTMAVHATDLLRQARQVPT 76 Query: 77 LKEAIADLHFIYATTARNRNNFK---SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ ++ T R R + + +P++A E + +G ++FG E GL+ Sbjct: 77 LAEALQGCVQVFGTAGR-REPYPPEWQIQSPRQA---FPELLAAG-PAALVFGPEDRGLS 131 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPAT 188 NEE+AL + I P +P +PSLN++QAV + +E C + + + PA Sbjct: 132 NEELALCHRQIQIPTDPAYPSLNLAQAVGICCYELRTLLCQNLPPPVTSSGI---SKPAP 188 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE L + GY P ++KML L ++F R L+ EV LLRGI+ L + Sbjct: 189 FELLEGFFGHLEALLLQIGYLHPHTARRKML-KLRALFHRAGLIVSEVALLRGILRQL-Q 246 Query: 249 FSRQSSRR 256 +S++SS R Sbjct: 247 WSQKSSPR 254 >gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] Length = 242 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L++L LVNP +P +A + ++ AD ++ + ++ Sbjct: 8 IVLVGTTHPGNIGAAARAMHTMGLSRLYLVNPAR-FPCAEATARASGADELLAQAEICTS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA ++ +AR+RN L + + + G+ V I+FGRE GL+N E Sbjct: 67 LPQAIAGCRMVFGLSARSRNISWPALDARACGALTVQEALEGE-VAIVFGREHSGLSNIE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194 + + + P NP + SLN++ AV +M +E ++ + + ++ PA+ E+ Sbjct: 126 LDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVRMAAMAGASPPARRPTESPPASVDEVEG 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 F +LE +L E G+ P K ++ L +F R L EV +LRGI++ Sbjct: 186 FFQHLEQTLIEIGFLNP-SNPKLLMRRLRRLFFRAHLEIREVNILRGILTA 235 >gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 254 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F+ L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R L P E A + V +FGRER GLTN+E+ Sbjct: 69 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191 L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ + Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQ 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L L +L+E + + + M L + +R E+ +EV L+RGI+S + + Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246 >gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] Length = 250 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 16/246 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + ++++ ++F + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKILENCKIFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129 L++AI D + A+ R + K++ V +E IF N+ IIFGRE Sbjct: 72 LQKAIFDCDLVLASCGR-------IDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFGRED 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN E+ L+N S P + PSLN+S AV ++++E ++S + +K N ++K Sbjct: 125 RGLTNSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +FLD E+ L GY K K + + +R E+ +LRGIV ++ F Sbjct: 185 EVHDTFLDIEEMLL-RVGYLLKHTSKAK-ISKFKNFILRANTSMHEINVLRGIVHQINWF 242 Query: 250 SRQSSR 255 S + Sbjct: 243 LNNSKK 248 >gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] Length = 278 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 17/256 (6%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ V L +A++ +H+ A TAR R P+ AA + ++ G+ Sbjct: 70 ASGADDVLACAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + + Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATA 188 Query: 181 -------------KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + A E+ S +LE +L + P KK++ L +F Sbjct: 189 TAHAAPRAAAGPGEPAGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 247 Query: 228 RPELMREEVFLLRGIV 243 R L REEV ++RGI Sbjct: 248 RSGLEREEVNIVRGIA 263 >gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54] Length = 263 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 14/248 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+V+P N+G ARA+ ++L LV P+ D +A + ++ A V+++ R++ Sbjct: 11 IMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGALDVLENARIYD 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R+ ++AA + + I+ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAIVLGTERAGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185 N +I L + I P NP + SLN++QA+ L WE +V + +T Sbjct: 131 NAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQAPSRGA 190 Query: 186 -PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+ + +FL + E +L + P KK+L + +F R L R+EV ++RG+ + Sbjct: 191 EPASGEAVQAFLAHWEEALVGVRFLDPAH-PKKLLPRMRHLFSRVALTRDEVDMMRGVCT 249 Query: 245 TLDKFSRQ 252 + +R+ Sbjct: 250 AMLAAARR 257 >gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] Length = 255 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 133/257 (51%), Gaps = 22/257 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VARAM NF + L LVNP + +AR+ +++A V++ R+ S Sbjct: 10 VVLVEPMYQGNVGSVARAMKNFGYSDLVLVNPCE--LEGQARAMASHARDVLEGARITST 67 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132 L+EA+ ADL + T A + + + P A E+I +SG + ++FGRE G Sbjct: 68 LEEAVRGADL-LVGTTGASSLKTGEHIRLPLYPAREFKEKIKEYSG-TIAVLFGREDNGF 125 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 N+E+ + +I+ P + ++P +N+S AV ++++E E ++ N P +G Sbjct: 126 NNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYELSE---------LEGGNNPLAEGFD 176 Query: 193 LSFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L +L+ LEE Y P KK K L I R L EV LRGI+ ++ Sbjct: 177 LQLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKTERKMG 234 Query: 252 QSSRRNNVLLQKTEKSE 268 ++ N LQK E SE Sbjct: 235 FATEAEN--LQKVEDSE 249 >gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] Length = 241 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 21/242 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ ++ S+ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQALALAAGASDIAENAKIVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA++D + ++AR+R +L P+E + E GQ+ V ++FGRER GLTN Sbjct: 66 LTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEE---GQSAPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT------ 188 +E+ + + P NP + SLN++ AV + +E V KEQ+ AT Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYE------VRMAFLEKEQSQYATTELVEY 176 Query: 189 --KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL F ++LE + ++ F ++ K+++ L +F R +E+ +LRG+++ + Sbjct: 177 PRHKELEMFFEHLE-KVAQKTQFISEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAI 235 Query: 247 DK 248 +K Sbjct: 236 EK 237 >gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1] gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1] Length = 254 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 21/247 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V N+G ARAM + LRLV P D + KA + ++ A ++ + R F Sbjct: 9 IVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLLAARQFDT 68 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+AD ++ +AR R + + P A +VL E + V ++FGRE GLTNE Sbjct: 69 LEEALADCSLVFGASARKRTIPWPLITPPVMADLVLKEPVEG--RVAVLFGREDNGLTNE 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----------NVKEQN 184 E++L + ++ P + + LN+SQA+ ++ ++ + S+V K ++E + Sbjct: 127 ELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQ-LRQSLVERPKGEEAALDTGSFGLREWD 185 Query: 185 T-PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRG 241 PAT E+ F +LE +L + + E +++ + +F IRP+ M EV +LRG Sbjct: 186 APPATGEEMERFFRHLEETLVALEFLKH-ENPGQLMTRMRRMFGRIRPDHM--EVNVLRG 242 Query: 242 IVSTLDK 248 +++ + K Sbjct: 243 VLTAMQK 249 >gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 242 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 11/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 7 IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-LPDSQAIALSAGASDVIGQATIVET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L++A+ + + T+ R R + P+E + I N V IIFGRER GLTN Sbjct: 66 LEQALLGCNLVIGTSVRARTLSWPQVTPRECG---EKTIHQAINSPVAIIFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190 EE+ + P NP + SLN++ AV L+ +E + +EK N + Sbjct: 123 EELQKCQYHLHIPTNPEYGSLNLAMAVQLISYEIRMAYLAINEKKSAVDNKDKVQYPPIE 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ F +LE L G+ R ++++ L +F R +E+ +LRG++++++K+ Sbjct: 183 DIERFYIHLEAVLNASGFIRK-RHPGQIMNKLRRLFTRAHPEVQELHILRGVLTSIEKWH 241 Query: 251 R 251 + Sbjct: 242 K 242 >gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 246 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LT L LV P+ E+A + +A A+ V+ S + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSV-DEQAIALAAGAEDVVKSAVTAES 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+AD + T+AR R+ S++ P+E +G+ V I+FGRER GLTNEE Sbjct: 66 FSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNGK-VAIVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQ-NTPATKGE 191 + + ++ P NP + SLN++ AV L+ +E + +I S +N++ N E Sbjct: 125 LLKCHYHVTIPANPDYASLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYPQMEE 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F + E G+ + + ++ L ++ R + + E+ +L G++S ++K Sbjct: 185 LEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAVEK 237 >gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 258 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM LT+L LV P E A SA A+ V+ +F L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKAL-DEDAYRRSAGAEDVLSDAPIFETL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R LAP A + V I+FGRER GLTN+E+ Sbjct: 69 AEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC----------MENSIVSSEKNVKEQNTPA 187 L +A + P +P F SLN++ AV ++ +E + + + PA Sbjct: 129 QLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAPAAPAADSAGPRELPA 188 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + ++ L +L+E + + M L + +R E+ +EV LLRGI++ Sbjct: 189 SHAQMEGLFGQLGQTLDEIDFHKGRAPDSAMR-KLRRLLLRAEMTEQEVRLLRGILADAQ 247 Query: 248 KFS 250 + + Sbjct: 248 RMA 250 >gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTNE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154 >gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 258 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 12/243 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV Q NIG ARAM LT+L LV P E A SA A+ V+ +F L Sbjct: 10 VLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKAL-DEDAYRRSAGAEDVLSDAPIFETL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD + TAR R LAP A + V I+FGRER GLTN+E+ Sbjct: 69 AEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTNDEL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----------QNTPA 187 L +A + P +P F SLN++ AV ++ +E + + + + PA Sbjct: 129 QLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAQAAPAADSAGPRELPA 188 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + ++ L +L+E + + M L + +R E+ +EV LLRGI++ Sbjct: 189 SHAQMEGLFGQLGQTLDEIDFHKGRAPDSAMR-KLRRLLLRAEMTEQEVRLLRGILADAQ 247 Query: 248 KFS 250 + + Sbjct: 248 RMA 250 >gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] Length = 244 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 127/237 (53%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P++ E++ S V ++FGRER GLT Sbjct: 67 LEAAVADCRLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191 N+E+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ E Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINMLRGILTSMQK 238 >gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] Length = 242 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENAVIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ D + ++AR+R +L P+E A + GQ V ++FGRER GLTN Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECA---EKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192 EE+ + + P NP + SLN++ AV + +E +V+S+ + Q+ EL Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYKPQPQDEYPRHEEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + +K ++++ L +F RPEL +E+ LRGI+++++K Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237 >gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708] Length = 245 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 13/250 (5%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G I+LV+P N+G +AR M NF L L LVNP+ S A + +A +++S Sbjct: 2 GSAGIRIVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILES 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +F L EA+ + AT R+ + + +P+ + L E + + V +IFGRE Sbjct: 62 AVIFPTLPEALQGCVRVIATIGRDYSGHIPLESPRTSLPWLLEE--TEKPVALIFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NEE+ ++ +I P NP +PSLN++ AV + +E + + K P T+ Sbjct: 120 GLSNEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAKIFTTPKPPTTE- 178 Query: 191 ELLSFLDYLEISLEER-------GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ++ +D LE +E GY P +M + ++ R + EV +LRGI+ Sbjct: 179 --MAPVDMLEPYYQELESLLLFIGYLYPHTAASRM-EKFRHLYNRAHIQTTEVAMLRGIL 235 Query: 244 STLDKFSRQS 253 ++ R S Sbjct: 236 RQIEWAIRNS 245 >gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 242 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM L++L LV P +P A + ++ A V++S V +L EA+ Sbjct: 22 NIGAAARAMKTMGLSRLYLVAP-SAFPDPVADARASGATDVLESACVVDSLDEALHGTIL 80 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A TAR R V + +EAA L G +V ++FG E GLTN+E+ + +S Sbjct: 81 SAAITARRRERSVPVRSAREAAPELVAFAEKG-DVALVFGTEMSGLTNDEVERCSMPVSI 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206 P NP F SLN+ AV L+ +E + + +S + AT E+ F +LE ++ Sbjct: 140 PANPAFSSLNLGAAVQLLCYE-LRMAALSPTPPAEPLPDLATFEEIEGFHRHLERAMTAS 198 Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 G++ P K+ + L +F R L +EEV +LRGIV L++ Sbjct: 199 GFYDPANPKRLLQ-RLRRLFGRVRLEKEEVNILRGIVGALER 239 >gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 228 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ AR + + ++D++ ++ Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDST-AHLEPAARWVAHGSGDILDNITTYAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + L++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LELADVLTGAPMVADYPSLNLGQAVMVYCYQ 154 >gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] Length = 248 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 4/231 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VAR M N L QL LV P ++AR + + V++ +V Sbjct: 11 IVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEARLMAVHGVDVLEQSQVVET 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EA+ I ATT R+ + + P+ A L + G N ++FG E GL NEE Sbjct: 71 IPEALQGCQRIIATTGRSLSLPTHLETPRGALPWL---LAEGLNSALMFGTEDRGLNNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + +S P NP +PSLN++QAV + +E + + E A+ L + Sbjct: 128 LKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQAAQDPLESETDSYFEGASFELLEGYY 187 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +LE L + GY P K + L+ ++ + L EEV LLRGI+ ++ Sbjct: 188 QHLEEVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTPEEVALLRGILRQVN 237 >gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 262 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTNE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154 >gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus profundus DSM 14977] gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus profundus DSM 14977] Length = 240 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 6/193 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N+G ARAM NF L +L LVNP R ++ A V++ R + Sbjct: 4 VVLVEPREPRNVGAAARAMKNFGLEELVLVNPERPLDEAAYRLATRGAADVLEQARTVAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A ++ AT+AR R + V P+E A + G V ++FGRE +GL+NE Sbjct: 64 LDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEGP-VALLFGRENFGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ ++A+ P + SLN++QAVLL+ +E + +E + PA EL F Sbjct: 123 EMDRAHAVWRIPTGG-YASLNLAQAVLLVAYEVF---LARAELTETARPRPAAAEELERF 178 Query: 196 LDYLEISLEERGY 208 LE L E Y Sbjct: 179 FADLEAYLIEIRY 191 >gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] Length = 256 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 10/233 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74 ++L P+ EN+G ARA N L+LV P W E+A ++ V+ S+ + Sbjct: 12 TVVLFQPKFAENVGSTARACANLGCPNLKLVQP-PAWDLERAAPLATGRGKEVLHSLTLH 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A++ H +Y TTAR K++ P++ A + ++ +G V ++FG E GL+N Sbjct: 71 PDLPSALSPHHTVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPEDRGLSN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKG 190 EEI + +++ P SLN+SQAVLL+++E + SS K P T Sbjct: 131 EEIDICGQLLTIPTASEATSLNLSQAVLLVLYEWFK---ASSGKRFLRTTPPQSRLCTHE 187 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E + L ++ +L +F+ ML + F R EL R E LL GI Sbjct: 188 ERETLLTSVQEALLRLDFFKDDNAAYWML-PVRRFFQRFELRRHEFNLLMGIC 239 >gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] Length = 243 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 19/242 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM L++L LV P +P +A++++ +A V+ + V ++ Sbjct: 8 IVLLGTTHPGNIGSAARAMKTMGLSRLHLVAPLY-YPDPRAQATAGHAADVLGAAHVHAD 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERWGLTN 134 L A+ D + TAR R L + A+ + E R + V ++FGRE GLTN Sbjct: 67 LAAALHDTRLVLGLTARPRRLAAEALDARCGALQIAEASRAYP---VALLFGREDSGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPAT 188 +++ + ++ P NP +P LN++ AV ++ +E C+E E + PA Sbjct: 124 AQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYELFLAGRCLEGE--RGEPSGSSAAPPAP 181 Query: 189 KGELLSFLDYLEISLEERGY--FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL F +L+ ++ GY RP + RPE R E+ LLRGI++ + Sbjct: 182 MEELEGFYCHLQRIMQASGYSRHRP-DALLMRRLRRLFNRARPE--RAELNLLRGILTAI 238 Query: 247 DK 248 ++ Sbjct: 239 ER 240 >gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B] gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis SB2B] Length = 240 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 18/239 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG VARAM L+ L L PR P ++ + +A A ++ ++ + Sbjct: 7 VVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPR-CEPDGQSVALAAGACDILKNLTRVES 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAI D + T+AR+R +L P++A L SG V I+FGRE GL NEE Sbjct: 66 LHEAIKDCALVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSGP-VAIVFGRENHGLYNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVS-SEKNVKEQNTPATK 189 + N + P NP + SLN++QAV ++ +E +EN +E + E+N Sbjct: 125 LQACNYHVFIPANPEYMSLNLAQAVQIICYETRIAHLALENQAAEVTEYPLMEENE---- 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE +L G+ +++ L +F R + E+ +LRGI+++++K Sbjct: 181 ----RFFEHLERTLTGTGFIIK-NHPGQVMTKLRRLFTRARIENHEMNILRGILTSIEK 234 >gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571] gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus petrolearius DSM 11571] Length = 247 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 16/230 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P NIG AR M NF L L+NP D ++AR+ S++A V+++ R ++ Sbjct: 6 IVLCEPLYEGNIGFAARVMKNFGFYNLTLINPPD--IGDEARARSSHARDVLENARHVTS 63 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTN 134 L E I + + + ATT ++ ++ P L + I + V IIFGRE WGL+N Sbjct: 64 LDEVIEESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGRENWGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 EEI + I + P +P +P +NIS AV ++V+E N+ P A++ E+ Sbjct: 124 EEIMKCDIICTIPTSPEYPIVNISHAVGVIVYEL---------ANIPRGTYPMASRIEVD 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +F D+L+ L+ + P K++ L + IF R L EV + GI+ Sbjct: 175 AFYDHLDRFLDTINH--PDYKRENTLTMMRRIFGRTNLTIREVSTMHGIL 222 >gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str. Hildenborough] gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1] Length = 254 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72 G +++V + EN+GMVARA N + LV+P + W +KAR ++A + +++ V+ Sbjct: 4 GLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDP-ERWEIDKARPLATAKGEPLLERVK 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V L EA+AD ++ TTAR + +L P++A + + G+ V ++ G E GL Sbjct: 63 VVGTLSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDRGL 122 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N+EI +++ P P SLN++QA L++++EC + S+ Sbjct: 123 NNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYECHKASL 163 >gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp. ND132] gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio desulfuricans ND132] Length = 252 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 6/244 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L P+ ENIG ARA N +++L +V+P + + ++A+A ++ S R+ Sbjct: 6 VVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARHILTSARIVD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ ++ TTAR K ++ P+ A V+++R+ +G V ++FG E GLTNE Sbjct: 66 TLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDKGLTNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLS 194 E ++ + +++ P + SLN++QAV+++++EC + S+ + + P T E + Sbjct: 126 ETSVCSGLVTIPTSREDTSLNLAQAVVVVLYECFKRSLAGPFVPDGPPEERPTTIKEQEA 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST----LDKFS 250 L+ +L + + ML + F + L R E LL G+ +DK+ Sbjct: 186 LFGNLQETLLAIDFLKDDNPDYWML-PVRRFFSKINLKRNEFNLLMGVCRQVRWFVDKYG 244 Query: 251 RQSS 254 Q+ Sbjct: 245 PQAG 248 >gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 267 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M NF L+ +V PR +AR + +A +++ + N Sbjct: 27 IVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVDN 86 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ++ ATT + + + + P E+ + + G +IFGRE GL E Sbjct: 87 LPSALEGCQWVAATT--GQRDLRDL--PLESPTQILPWLRQG-PAALIFGREDSGLQRSE 141 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192 ++L+ ++FP +P +PSLN++QAV L + S S +++++PA +L Sbjct: 142 LSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQL 201 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + LE L GY +M + + +I R L EEV LLRG+V L+ Sbjct: 202 HGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLN 255 >gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] Length = 245 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M NF L+ +V PR +AR + +A +++ + N Sbjct: 5 IVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVDN 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ++ ATT + + + + P E+ + + G +IFGRE GL E Sbjct: 65 LPSALEGCQWVAATT--GQRDLRDL--PLESPTQILPWLRQG-PAALIFGREDSGLQRSE 119 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192 ++L+ ++FP +P +PSLN++QAV L + S S +++++PA +L Sbjct: 120 LSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQL 179 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + LE L GY +M + + +I R L EEV LLRG+V L+ Sbjct: 180 HGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLN 233 >gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] Length = 257 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 9/237 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 7 IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E V + R V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVIGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKGE 191 + + ++ P NP + SLN++ AV ++ +E + + + ++ V E+ + Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYE-VRVAFLERQQAVLPVIETEEAPYPLVDD 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 184 LERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEVQELNILRGMLTSIEK 239 >gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2] gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 3/232 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+PQ NIG V RAM NF +QL LVNP + + AR + +A +++ V Sbjct: 7 TVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSALPILEKAVVVD 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + H + TT R + L+P++ L E + Q ++ GRE GL Sbjct: 67 TLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQ-CALVMGREDHGLYTS 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L ++ P + S+N+S A L++++ + N PAT EL Sbjct: 126 ELELCQRFVTIPTENAYGSMNLSHATALLLYQASMALGRTIPLNTGS-TPPATSHELAGM 184 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 D++ SL + + + +L IF R L R EV ++RG++ +D Sbjct: 185 YDHMTKSLCDIDFLN-TQNPDHLLRTFRRIFGRAGLDRREVAIIRGLMGRID 235 >gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 243 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNGQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] Length = 242 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ D + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECG---QKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192 +E+ + + P NP + SLN++ AV + +E +V+S+ ++Q+ EL Sbjct: 123 DELQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + +K ++++ L +F RPEL +E+ LRGI+++++K Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237 >gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 241 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L++L LV+P S A + +A A V+ + + + Sbjct: 8 IVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALAAGATDVLGNAVIVDS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +AIAD T+AR+R ++ P+E L +G V ++FGRE GLTNEE Sbjct: 67 VADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVGEAVNGP-VALVFGRENSGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT---PATKGELL 193 + L N + P NP + SLN++ AV + +E + K V+E++ P++K L Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKAVQEEDDTLYPSSKQTEL 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE +L + G+ +++ M + L +F R E+ +LRGI+++++K Sbjct: 186 -FYEHLEDTLFKTGFI--IKQHPGMVMTKLRRLFNRARPEDAEMNILRGILTSINK 238 >gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] Length = 242 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ D + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECG---QKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192 +E+ + + P NP + SLN++ AV + +E +V+S+ ++Q+ EL Sbjct: 123 DELQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + +K ++++ L +F RPEL +E+ LRGI+++++K Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237 >gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 243 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + A + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEAPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC 35316] gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cancerogenus ATCC 35316] Length = 228 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T+LR+V + + D ++D++ + Sbjct: 5 IVLVQPARAENIGAAARAMKTMGFTELRIVGSVAHLEPATRWVAHGSGD-IVDNITTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P+E +L E+ + ++FGRE GLTN+E Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638] gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 244 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A + T+AR+R +L P+E + V ++FGRER GLTN+E Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTAEAEHAP-VALVFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELL 193 + + ++ NP + SLN++ AV ++ +E + + EK + + TP +L Sbjct: 125 LQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEKGETAEPEETPYPLVDDLE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 F +LE +L G+ R ++++ L +F R +E+ +LRG+++++ Sbjct: 185 RFYGHLEQTLLTTGFIR-ASHPGQVMNKLRRLFTRARPETQELNILRGMLASI 236 >gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAVNTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + + + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L G+ R + M + L +F R +E+ +LRGI++++++ Sbjct: 183 LERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 244 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 126/241 (52%), Gaps = 10/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENPDAAAHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ R ++++ L +F R +E+ +LRG+++++++ + Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGMLASIEQLKK 241 Query: 252 Q 252 + Sbjct: 242 E 242 >gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 241 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LT L LV P+ ++A + +A A+ V+ S + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQS-EDDQAIALAAGAEDVVKSAVTAES 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+AD + T+AR R+ S++ P+E +G+ V I+FGRER GLTNEE Sbjct: 66 FSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNGK-VAIVFGRERVGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQ-NTPATKGE 191 + + ++ P NP + SLN++ AV L+ +E + +I S +N++ N E Sbjct: 125 LLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYPQMEE 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F + E G+ + + ++ L ++ R + + E+ +L G++S ++K Sbjct: 185 LEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAVEK 237 >gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 247 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM L+ L LVNP P +A S +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLVK-PDSQAISLAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EAIA + T+AR+R+ +L +E I + + GQ V ++FGRER GLTN Sbjct: 66 LDEAIAGCSLVVGTSARSRSLPWPMLDSRECGI---KSVEEGQQAPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190 EE+ + ++ NP + SLN++ AV ++ +E + + EK + + Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLDAQEKATPQPQFAESPYPLVD 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L F ++E + G+ R +++ L ++ R R+E+ +LRG++++ +K Sbjct: 183 DLERFYQHMEQMMLNSGFIRE-GNPGQVMSKLRRLYTRARPERDELNILRGMLASFEK-- 239 Query: 251 RQSSRRNN 258 R+ S N+ Sbjct: 240 RKGSEGNS 247 >gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34] gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus metallidurans CH34] Length = 289 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 22/245 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ----LRLVNPRD-GWPSE-KARSSSANADCVIDS 70 ++LV+ N+G VARA+ L LV+PR+ G S A + ++ AD V+ S Sbjct: 30 VVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDAVAMASGADDVLAS 89 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGR 127 + +++ A+A F A TAR R L P+ AA+ + V +FG Sbjct: 90 ATIVDSIEAALAGTAFTVAMTARQREFGPPRLLPR-AAVAKARSVLEADPATTVAFVFGN 148 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--------- 178 ER+GL N+ + +A+ P NP++ SLN++QAV L+ +E M +++ +++ Sbjct: 149 ERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYE-MRLALLEAQETAGGLPDVA 207 Query: 179 -NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 ++ PAT ++ + +L+ L G+ P +K++ L +F R L REEV Sbjct: 208 GDIGYAGDPATTEQIEAMFGHLQAGLAAIGFLDPA-NPRKLMPRLRRLFARTGLEREEVN 266 Query: 238 LLRGI 242 +LRGI Sbjct: 267 ILRGI 271 >gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] Length = 276 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 19/258 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR + +A + Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ SV V L +A+ +H+ A TAR R P+ AA V +E G+ Sbjct: 70 ASGADDVLASVHVVPTLADALTGVHWSVALTARLREYGPPQWTPRAAAAVAHEEAVHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--- 177 + ++FG ER GL+NE++ +AI P NP + SLN+ QAV ++ +E + E Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELRTAYLCDDETTD 188 Query: 178 ------------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 ++ + A E+ S +LE +L + P KK++ L + Sbjct: 189 GAPALRAGAGQAESTGTRAQMAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRL 247 Query: 226 FIRPELMREEVFLLRGIV 243 F R L REEV ++RGI Sbjct: 248 FARSGLEREEVNIVRGIA 265 >gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] Length = 245 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 8/237 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM +T L LV P + +P A + ++ AD ++ RV + Sbjct: 10 VVLVGTTHPGNIGSAARAMKAMGITDLVLVAP-ERFPHADATALASGADDLLAGARVVDD 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A++D ++ T+AR R + VL P AA + + G V ++FGRE GLTN E Sbjct: 69 LAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQAAEGP-VALVFGREHSGLTNAE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKE----QNTPATKGE 191 + NA + P P F SLN++ +V +M + ++ S + E ++ A++ E Sbjct: 128 LDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALRMAALAGESARTAAEPEDARDPLASQAE 187 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + E +L P E + ++ L +++R L EV +LRGI++ ++ Sbjct: 188 MEGLFSHFEKALTTIEVLDP-ENPRHLMRRLRHLYMRAGLSASEVRMLRGILTHTER 243 >gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] Length = 244 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 127/237 (53%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P++ E++ S V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191 N+E+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ E Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] Length = 253 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 16/247 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKAR 58 P L +S + ++LV PQ N+G VARAM NF L L LV P + + KA Sbjct: 3 PSLLDSIR---VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAKAY 59 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFS 117 + A+ ++D R L EA+ D + TT R+R+ + S+++P+ + + Sbjct: 60 HLAVRAEVILDQARRSKTLLEAVQDCVLVVGTTVRSRDVYPGSLVSPRTLTPQVLKAAQR 119 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G+ V ++FGRE +GLTN+E+ L+ I+ P P +LN++QAVLL+ +E I + Sbjct: 120 GK-VALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYELF---IGAEN 175 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + PAT+ L + D LE + E G+ P + L I + L EV Sbjct: 176 PPEPPADQPATRDALEALFDDLERYVLEIGFTDP-RRLPYTRRRLRRILHKATLTDPEVK 234 Query: 238 LLRGIVS 244 +LRG + Sbjct: 235 MLRGFLH 241 >gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 243 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTPATKG 190 +E+ + ++ NP + SLN++ AV ++ +E + + E + +E P Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEMPYPLVD- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 182 DLERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 >gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301] Length = 257 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L NIG ARAM L L LV P D +P A + S A ++++ V Sbjct: 23 VVLCQTSHPGNIGSAARAMKTMGLKHLYLVKP-DKFPDAHATALSTGAADLLENAIVTET 81 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ +AR R ++ +EAA+ + +I + Q + ++FG E GL+N E Sbjct: 82 LSEALQGCVLAIGMSARKRQISHELVNVREAAMRAS-KIAASQPIALVFGTEMSGLSNAE 140 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + P NP + SLN++ AV +M +E M +++ + + AT L Sbjct: 141 LDCCQLLAMIPANPEYSSLNLAAAVQVMCYE-MRMAVLECKLDEITPTEYATNEALEGLY 199 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++ Sbjct: 200 AHLEDTLIKIGYLNP-NAPKKLSERIRRIYARAKLEKEEVNLLRGILT 246 >gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 228 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154 >gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira halophila SL1] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 2/228 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L L LV+P+ +A + +A A V++ R + Sbjct: 8 IVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLERARTAPD 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ + +AR+R + L + AA + G ++ +FGRER GLTN E Sbjct: 68 LATALTGCRLAFGLSARSRAERQPRLELRPAAESAVAQGGDG-DLAWVFGRERTGLTNAE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + ++ P +P + SLN++Q+V L+ WE + + + PA L F Sbjct: 127 LDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELRMAAAAGGPVQGQAEEPPAAVDTLERFF 186 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 D+LE GY + L +IF R L +EV +LRG++S Sbjct: 187 DHLEEMAGRVGYL-DRHNPALTMRRLRNIFRRAWLTEDEVRMLRGLIS 233 >gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter turicensis z3032] gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter turicensis z3032] Length = 246 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNASIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A + T+AR+R +L P+E + ++E + V I+FGRER GLTN+ Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAAHA--PVAIVFGRERVGLTND 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTP-ATKG 190 E+ + ++ NP + SLN++ AV ++ +E + + + +E+ TP Sbjct: 124 ELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVRMAWLATQDAQAPAHAEEEETPYPLVD 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L G+ R ++++ L +F R +E+ +LRG++++++ Sbjct: 184 DLERFYGHLEQVLLTTGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGMLASIE 239 >gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] Length = 274 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 31 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 90 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++ + + A TAR R LAP+ AA ++ SG ++ ++FG ER GL NE Sbjct: 91 TLGEALSGVQWSIALTARTREYGPPRLAPRAAAAHARTQVESG-DIALVFGNERTGLANE 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191 + +A+ P NP + SLN++QAV ++ +E +E + +++ + A E Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGALAQSDE 209 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 210 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 260 >gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VAR NF + +LRLV+PR +AR + + ++ + FS Sbjct: 12 VVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAMLKQAKQFSC 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD H + A+ R + + P++A L E + S V ++FGRE GLTNEE Sbjct: 72 LLDAVADCHRVVASCGRLDHGNIPLQTPEQAVPWLLESM-SAAPVALVFGREDRGLTNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATKGEL 192 + L+ +++ + +PSLN+S AV +++ E + ++E + PA+ +L Sbjct: 131 LQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQR---CQGQGTLREGQSAWPDPASPRQL 187 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L + L E G+ + +M + + R + EEV LLRG+V L Sbjct: 188 DACLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQL 240 >gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 249 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 9/234 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VAR NF + +LRLV+PR +AR + + +++ + FS Sbjct: 12 VVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAMLEQAKQFSC 71 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD H + A+ R + N L P E A+ V ++FGRE GLTNE Sbjct: 72 LLDAVADCHRVVASCGRLDHGNIP--LQPPEQAVPWLLESMGAAPVALVFGREDRGLTNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192 E+ L+ +I+ + +PSLN+S AV +++ E C + ++ PA+ +L Sbjct: 130 ELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQRCQGQGTLRGGQSAWPD--PASPRQL 187 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L + L E G+ + +M + + R + EEV LLRG+V L Sbjct: 188 DACLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQL 240 >gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] Length = 184 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 11/177 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + RV + Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 EA+ D + T+AR R+ +++ P+E A E++ + + + I+FGRER GLTNE Sbjct: 65 FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGKIAIVFGRERIGLTNE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPAT 188 E+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177 >gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] Length = 243 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 18/236 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VARAM NF T L LVNP +AR+ S++A V++ R+ S Sbjct: 10 IVLVEPMYQGNVGSVARAMKNFGYTDLVLVNP--CKLEGEARAMSSHARDVLEGARIVST 67 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133 L+EA+ + TT + + + P + L ER+ +SG + I+FGRE G Sbjct: 68 LEEAVKGANLRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSG-TIAILFGREDTGFR 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + + + P + ++P +N+S AV ++++E +++ N+P G L Sbjct: 127 NDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYEL---------SDMEGGNSPLADGFDL 177 Query: 194 SFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L +++E LEE Y P KK K L I R L EV LRGI+ ++ Sbjct: 178 QLLYEHMEKLLEEIDY--PPHKKDKTYLMLRRILGRAGLTPREVQTLRGIIKKTER 231 >gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAEALRDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154 >gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] Length = 239 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 126/237 (53%), Gaps = 16/237 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+ L LV+P+ E++ + +A AD V+ + + Sbjct: 7 IVLVETSHSGNIGSAARAMKTMGLSNLYLVSPKS--VDEQSIALAAGADDVMRNAHIVDT 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 ++AI D + T+AR R+ +++ P++ A E+ + Q V I+FGRER GLTNE Sbjct: 65 FEQAIEDCSLVIGTSARLRHLQSTLIDPRKCA----EKASAHQGQVAIVFGRERVGLTNE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ + ++ P NP + SLN++ AV L+ +E M + ++ +K ++ T E Sbjct: 121 ELLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-MRMAFLAKDKTENALSMIEDIYPTAQE 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F + E G+ + + ++ L ++ R L + E+ +LRG++S ++K Sbjct: 180 MEYFFAHTEQVYLSLGFI----QNQGVMQKLRRLYNRSSLEKNELNILRGMLSAVEK 232 >gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 228 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ AR + + ++D++ + Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDSV-AHLEPAARWVAHGSGDILDNITTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L+E+ + ++FGRE GLTN+E Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGAPMVADYPSLNLGQAVMVYCYQ 154 >gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 243 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 10/231 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV+ ++ EN+G ARA+ T LRLV PR SEKA+ + + V+ + ++ NL Sbjct: 6 ILVESEVPENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAAPIYQNL 65 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+ D+ F ATTAR+R ++ +E L + + Q V +FG ER GL +I Sbjct: 66 SDALHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFGGERSGLNRHDI 125 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + I + P +PSLN++QAV++ + E+++ ++K+Q T L + + Sbjct: 126 DCCDLITTIPQGNPYPSLNLAQAVMVYSFMLSESAV-----HIKDQRLNRTPMPPLEYAN 180 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 SL+ E+ +K Y L E+++LL I + +D+ Sbjct: 181 LKHSSLQLMERIGLAERYQK-----YVTRGLARLGTEDLYLLHNIRACIDR 226 >gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 242 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 15/243 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+Q+ LV P ++ ++ +D +++ +V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQMVLVAPECAVDAQAIALAAGASDIALNA-QVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A+ + ++AR+R +L P++ + GQ V ++FGRER GLTN Sbjct: 66 LSEAVAECGLVVGSSARSRTLEWPMLDPRQCG---EQFAIEGQTHPVAVVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-----K 189 EE+ L + + P NP + SLN++ AV + C E + E +P Sbjct: 123 EELQLCHYHVCIPANPEYSSLNLAMAVQTL---CYEIRVAHLTHQQGEFPSPTMVDYPRH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F +LE L E + P + ++++ L +F R +E+ +LRG+++ ++K Sbjct: 180 QELDRFYQHLERVLLESEFISP-SQPGQVMNKLRRLFSRARPEAQEINILRGVLTAVEKK 238 Query: 250 SRQ 252 RQ Sbjct: 239 MRQ 241 >gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] Length = 247 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72 G I+LV + ENIGM ARA N +RLV+P + W EKA ++ ++D VR Sbjct: 5 GVQIVLVKTRFPENIGMAARACANMGCPAIRLVDP-ERWDREKAGPLATPKGQSLLDGVR 63 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L A+A+ + TTAR +++LAP +AA + + + V ++FG E GL Sbjct: 64 VSPDLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPEDRGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 NEEI +++ P + SLN++QAVLLM++EC Sbjct: 124 NNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYEC 159 >gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 10/239 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARAM L L LVNPR +P ++A + A ++ +V Sbjct: 30 IVLSHTSHPGNIGGAARAMKTMGLDSLYLVNPR-FFPDKEAERRATGALDILHKAKVCDT 88 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++ A TAR R+ V ++ A L + + V ++FG E GLT E Sbjct: 89 LDEALSGTVLAAAVTARQRDLSHEVFDGRQGATKLLD-LAQKDFVALVFGTEMSGLTTLE 147 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----C---MENSIVSSEKNVKEQNTPATK 189 ++ II P NP + SLN++ AV +M +E C +E S + AT Sbjct: 148 VSKCQIIIHIPANPEYSSLNLASAVQVMAYELRMACRDLLETPPASPTLTLHGGGMAATF 207 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ +LE G+ P ++ K+++ + +F R L +EEV +LRGI+S +K Sbjct: 208 DEIELLYAHLEQVAISSGFLDP-QEPKRLMQRMRRLFARARLEKEEVNILRGILSACEK 265 >gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii C-113] Length = 246 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L +L LVNPR +P +A + ++ AD ++ +V ++ Sbjct: 8 IVLVETTHPGNIGAAARAMRTMGLHRLYLVNPRR-FPCAEATAMASGADELLVQAKVCTS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA ++ +AR+RN VL + + ++ + G+ V I+FGRE GL+N E Sbjct: 67 LAQAIAGCQKVFGLSARSRNISWPVLNTRASGALVVQEALKGE-VAIVFGRENSGLSNFE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + N + P NP + SLN++ AV +M +E S+ ++ E ++ A+ E+ F Sbjct: 126 LDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIRMASMTDDFRHSGESSS-ASIDEIEGFF 184 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L + + K ++ L +F R L E+ +LRGI++ K Sbjct: 185 SHLEQTLIKIDFLNS-SNPKFLMRRLRRLFFRAHLNTPEINILRGILTAAQK 235 >gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9] gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 243 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 10/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L+ NIG ARAM LT L LV+P ++ ++ AD V+ + ++ Sbjct: 7 VVLIGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDAKSLALAAGAAD-VVTNAKIVKT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAIAD + ++AR+R L P+E+ I E + V I+FGRER GLTNEE Sbjct: 66 LDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEA-AAHPVAILFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192 + + + P NP + SLN++ AV + +E +E + EK + E P K EL Sbjct: 125 LQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAFLETQKYTGEKIINEY--PRAK-EL 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + F + ++ L +F R ++E+ +LRGI+++++K Sbjct: 182 ELFYEHLE-KVTTQTQFINKKHPGMVMTKLRRMFTRARPEQQELNILRGILTSVEK 236 >gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. MP688] Length = 254 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P NIG ARAM L L+LVNP + +P +A + + A ++++ +V S Sbjct: 13 VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCST 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132 L+EA++ +AR R +++ +EAA E + + + ++FG E GL Sbjct: 72 LEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFGTEMSGL 131 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATK 189 +N E+ + P +P + SLN++ AV +M +E + +++ ++ + + TPAT Sbjct: 132 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYE-VRMALLDEQQPLPHAGLKATPATN 190 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI+ TL + Sbjct: 191 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGIL-TLTQH 248 Query: 250 SR 251 R Sbjct: 249 PR 250 >gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16] gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16] Length = 299 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 6/234 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ N+G VARA+ L LV+PR D A + ++ AD V+ + Sbjct: 53 VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDVLAGALIVD 112 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A+A A TAR+R L P+ AA + + V +FG ER+GL NE Sbjct: 113 QVDAALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGNERYGLPNE 172 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192 + NA+ P NP + SLN++QAV L+ +E + + + N+ PAT ++ Sbjct: 173 VVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMRLALLEAAPDAGANIGYAGEPATAEQV 232 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +L+ LE G+ P ++ M + L REEV +LRGI + Sbjct: 233 EAMFGHLQTGLEAIGFLDPSNPRRLMTRLRRLLARS-GLEREEVNILRGIAKHM 285 >gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 244 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 20/242 (8%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M L++L LV+P+ +P ++ +A A +++ V + L+EAI D H ++ T+AR+ Sbjct: 1 MKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +L + A+ + GQ + I+FGRE GLTNEE+AL+N ++ PVN + Sbjct: 60 RTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGV 119 Query: 155 LNISQAVLLMVWE----CMENSIVSSE---------KNVKEQNTPATKGELLSFLDYLEI 201 LN++QA+ ++ +E +E V+S+ ++++ T+ ++ F +LE Sbjct: 120 LNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEK 179 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-----TLDKFSRQSSRR 256 L E + P E + + L +F R +L R E LLRGI S T K+ + SS + Sbjct: 180 MLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDK 238 Query: 257 NN 258 + Sbjct: 239 ED 240 >gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon] Length = 234 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 14/230 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P+ EN+G VAR NF + L +VNP + KA S +A+A V+ S ++ + Sbjct: 5 IILVEPKSEENVGAVARVTKNFGFSDLYIVNPPE--IGIKALSVAAHAYDVLQSCKIVDS 62 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTN 134 L AIA+ + TTA+ + K + P + L +++ + + I+FGRE GL N Sbjct: 63 LPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVGLLN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ L + ++S P +P +P +N+S AV ++++E + ++I + + ++ +L + Sbjct: 123 DELKLCDLVVSIPTSPEYPVMNLSHAVAVILYE-LSDTISGTLELAPVEDRERLYMQLKT 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 FLD E GY KK K L L I R EL +E+ L+GI+ Sbjct: 182 FLD-------EIGYRE--HKKAKTLLMLRRILGRAELTTKELQTLQGIIG 222 >gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. SIP3-4] Length = 258 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 11/242 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P NIG ARAM L L+LVNP + +P +A + + A ++++ +V S Sbjct: 17 VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCST 75 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132 L+EA+ +AR R +++ +EAA E + + + ++FG E GL Sbjct: 76 LEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFGTEMSGL 135 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATK 189 +N E+ + P +P + SLN++ AV +M +E + +++ ++ + + TPAT Sbjct: 136 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYE-VRMALLDEQQALPHAGLKATPATN 194 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI+ TL + Sbjct: 195 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGIL-TLTQH 252 Query: 250 SR 251 R Sbjct: 253 PR 254 >gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] Length = 276 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 11/239 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P+ ENIG ARA N L++L +V P + ++ +A +I ++ V+ + Sbjct: 26 VILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQERMLKMATGSAAELIHNLVVYHD 85 Query: 77 LKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ HFI TTAR N + S + P++ A L + + + ++FG E WGLTNE Sbjct: 86 LGTALGPFHFIVGTTARIGGNVRQSPVTPRDIAQQLIPLSYHNR-IALLFGPENWGLTNE 144 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELL 193 E+A +A+++ P F SLN++QAVLL+ +E I + ++ +++ TP A EL Sbjct: 145 ELAFCHALVTIPTAA-FRSLNLAQAVLLVAYE-----IFLARQDQRDRFTPRLANSWELE 198 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + L+ +L + Y + M+ L F R L EV ++RGI +D + R+ Sbjct: 199 AMYADLQDTLIKINYIGHQNPQHWMM-RLRRFFSRHGLRAVEVQVIRGICRQIDWYVRR 256 >gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12J] Length = 282 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 122/258 (47%), Gaps = 14/258 (5%) Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55 TP P+ L+ A +LV+ N+G ARA+ + LV PR D Sbjct: 7 TPADPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHA 66 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A + ++ AD V+ + RV ++ EA+A A TAR R + P+ AA + + Sbjct: 67 DAVAMASGADDVLAAARVVDDIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALL 126 Query: 116 FS-GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + Sbjct: 127 AAPDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 186 Query: 175 SSE------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 + + V PAT ++ ++LE L E G+ P + KK++ L +F R Sbjct: 187 GTGTGDTRMEGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 245 Query: 229 PELMREEVFLLRGIVSTL 246 +L EEV +LRGI + Sbjct: 246 TQLETEEVNILRGIAKRM 263 >gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM LT L LV+P E+A + +A A ++++ + Sbjct: 7 IVLIGTSHSGNIGSAARAMKVMGLTNLVLVDPACEI-DEQAMALAAGASDIVENATIVKT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L E I D + ++AR+R L P+E+ I +NE + V I+FGRER GLTN+ Sbjct: 66 LDETIGDCGLVIGSSARSRTLEWPQLDPRESGIKTVNES--ASHPVAILFGRERTGLTND 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELL 193 E+ + + P NP + SLN++ AV + +E + + + + K + P K EL Sbjct: 124 ELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIRMAHLDAIKYQGDAKVEEYPRAK-ELE 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI--RPELMREEVFLLRGIVSTLDK 248 F +LE L + F V++ ++ L +F RPEL +E+ +LRG++S+++K Sbjct: 183 LFYQHLEKIL-VKTQFINVKQPAMVMAKLRRLFTRARPEL--QELNILRGVLSSVEK 236 >gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] Length = 288 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 16/244 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL +P NIG ARA+ LR+V PR D E+A + + ++ V+++ + Sbjct: 12 CFILCEPAHPGNIGSAARAIKTMGFRDLRVVAPREADYRTHEEALAYATSSADVLEASKS 71 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQ-NVGIIFGRERWG 131 ++ L +A+ + + +A T +R F + L P ++AA R+ + + ++ +FG ER G Sbjct: 72 YATLAQALEGVTYAWAMTGYDRE-FGAPLTPMRQAASETASRLSALEGSIAFVFGTERSG 130 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------E 182 LTNEE+ L + P +P PSLN+SQAV + +E M+ +++ + + Sbjct: 131 LTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYE-MQLALLDARGDAGALYDWQGRFA 189 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PA + F D+ E ++ G P +K + ++ +F R L + E+ LLRG+ Sbjct: 190 HEEPAPLEAVEGFFDHWERAMAACGAHDP-KKPRHFMEVSRRLFGRAGLTKNELDLLRGV 248 Query: 243 VSTL 246 + + Sbjct: 249 CAAV 252 >gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum DSM 180] Length = 260 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 10/241 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+ NIG VARAM L++L LV PR P +A + ++ AD ++ V NL Sbjct: 15 VLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQ-RPDAEALARASGADDLLARAGVHENL 73 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+A + +AR R+ +L P E A L G+ V ++ GRE GLTN+E+ Sbjct: 74 TDALAGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGE-VALMLGRESSGLTNDEL 132 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELLSFL 196 A + ++ P NP F SLN++ A ++ +E + V+ E+ + AT + F Sbjct: 133 ARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRRAARAVAGERLTETPRDLATAEAMEGFY 192 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS------TLDKFS 250 +L +L G+ P E+ + + L +F R + R E+ +LRGI+S T ++F+ Sbjct: 193 AHLTETLVRIGFSDP-EQSRTLTRRLRRLFNRAQPDRVELNILRGILSAAQGRKTPERFA 251 Query: 251 R 251 R Sbjct: 252 R 252 >gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 255 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+ L LVNP P +A + SA A +I + V N Sbjct: 7 IVLVETSHTGNIGSTARAMKTMGLSNLYLVNPLHK-PDAQAIALSAGASDIIGNASVVDN 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+A + T+AR+R +L P+E + + V ++FGRER GLTN+E Sbjct: 66 LDQALAGCSLVVGTSARSRTLPWPMLEPRECGVKSIQEAAQAP-VALLFGRERVGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGELLS 194 + + + P N + SLN++ AV ++ +E + S ++ V+E + +L Sbjct: 125 LQKCHFHVQIPANHEYSSLNLAMAVQILAYEVRVAWLDSQRQDATVQEASVYPVAEDLER 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE L G+ R M + L +F R +E+ +LRG++++++ + Sbjct: 185 FYQHLEQVLSGTGFIRRAHPGLVM-NKLRRLFNRARPESQELNILRGMLTSIEHTQK 240 >gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] Length = 246 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L G NIG ARAM L+ L LV P+ +PS+ A + +A AD ++D + + Sbjct: 13 VVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPKH-FPSDDAYALAAGADDILDKAIIVGS 71 Query: 77 LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++AI D H TAR R K++ + I + E Q + ++FG E GL+ Sbjct: 72 LEDAIKDSHIAIGFTARRRELSQPHKNIRESAQNLIAIAE----DQKISLVFGNETNGLS 127 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGE 191 N+EI + N + SLN++QAV + E S + N +N E Sbjct: 128 NDEIKHCQLLSFIDANKSYSSLNLAQAVQICCHELRVALDFSKDNAINRGTRNDFVPHSE 187 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE L + G+ R ++ ++++ L +F R +L ++EV ++RGI + + K Sbjct: 188 LNGFFIHLESMLNDIGFLRKIQ-GERLMQRLRLLFNRTQLDQDEVNIMRGIFTEIQK 243 >gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] Length = 237 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 G NIG ARA+ + L + N + + ++ A + ++NA + +V+V NL EA++ Sbjct: 7 GGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKVKDNLNEALS 66 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSN 141 D++ +A TAR R +F+S+ + A + LN I S N+ I+ G E+ GL N + N Sbjct: 67 DINMAFALTARARRDFESIDVRQMATVALNHLIESKNHNIAIVMGNEQSGLDNNSLYNFN 126 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPATKGELLSFLDY 198 I+S P NP + SLN++QA+ + WE N + + +V AT G+ + Sbjct: 127 YIVSIPANPEYSSLNVAQALQITAWELRYKYINQLNNINFDVSAIKDSATIGQCDYLIKT 186 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LE GY + +K ++ + + ++ +E+V + GI+ L+K Sbjct: 187 IIEKLESSGYDK--DKLNSIVLKTKHLLRKSQISKEDVQMFLGIIKHLEK 234 >gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia vietnamiensis G4] Length = 276 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ V Sbjct: 31 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLAGAHVVP 90 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A++ +H+ A TAR R LAP+ AA ++ +G ++ ++FG ER GL NE Sbjct: 91 TLGDALSGVHWSIALTARTREYGPPRLAPRAAAAQARAQVGAG-DIALVFGNERTGLANE 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNV--KEQNTPATK 189 + +A+ P NP + SLN++QA+ ++ +E +E+ S+ E T A Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAFLEHGGAQSQSQPVQAEVGTLAQS 209 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E+ +LE +L + P KK++ L +F R L REEV +LRG+ Sbjct: 210 DEIERMYGHLERALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 262 >gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC 29413] Length = 243 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++LV+P N+G +AR M NF L QL LVNP+ SE+A + +A +++S Sbjct: 5 GVRVVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESAIT 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ ATT R+ + ++ P+ A L E + Q +IFGRE GL+ Sbjct: 65 VPTLPEALHGCVRAIATTGRDNDRGLTLETPRIALPWLLEE--TSQPSALIFGREDRGLS 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEE+ + I P +P + SLN++ AV + +E +N + + E A+ + Sbjct: 123 NEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNLTPPETQTISETEF-ASLEFME 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ LE L GY P +M + ++ R L EV +LRGI+ ++ Sbjct: 182 AYYQQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIE 234 >gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 242 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALTGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEATNTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192 +E+ + ++ NP + SLN++ AV ++ +E + + E + + + TP +L Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAEHEETPYPLVDDL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L G+ R ++++ L +F R E+ +LRG+++++++ Sbjct: 183 ERFYSHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESLELNILRGMLASIEQ 237 >gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] Length = 266 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 12/229 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ NIG ARAM N + LRLV PR S++AR+ + +A+ +++ V++ Sbjct: 18 AVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEELLERAPVYA 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD T+AR R + P L R+ + + ++FG E GL N Sbjct: 78 TLAEALADRDLSIGTSARERADMPRPQHP----AALRGRVRAATSPALVFGPEETGLLNA 133 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ A + P + SLN++QAVLL+ +E ++ E+ + AT+GE+ Sbjct: 134 DLEQCQATVRIPTAD-YASLNLAQAVLLVTYEFLQG----GEEPAGGERKTATRGEMEEM 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFI-RPELMREEVFLLRGIV 243 +L + GY + + + L+ + + R ++ E L RG++ Sbjct: 189 YGHLVDVMHLTGYTDAMRARHTL--RLWRLMLDRAQMSSAESRLFRGLL 235 >gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 220 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 12/216 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V +LV+P GENIG ARA+ +LRLVNP D A+ + +++ V++ + Sbjct: 4 VFVLVEPARGENIGAAARAIKTMGFKELRLVNPGD---MRAAQWVAHHSNDVLEQAVIVD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD+ A TAR+R + A ++ + S Q V I+FGRE GLT + Sbjct: 61 TLDQALADVDLSIACTARHRLQKDRYVDADRCAELVAGKGNSVQRVAIVFGREASGLTGD 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+A + S P+ PSLN+ QAV++ WE + V+ + P T G Sbjct: 121 EVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKRP-----ATVQPEADPTTFGHTRQA 175 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 L L +L+ +P E + +D+L + EL Sbjct: 176 LHQLLAALQ----IQPTENLHQWVDELLPLASDREL 207 >gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 250 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 8/236 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ N+G ARA+ LRLVNP+ D +A + ++ A V+++ V Sbjct: 12 VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L++A+ + + T+R+R L + A +++E + + V ++FG ER GL NE Sbjct: 72 SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW---ECMENSIVS--SEKNVKEQNTPATKG 190 +AL + NP +PSLN++QA+++ + E EN + + ++ + A Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALRETFENRTQTTLTSADINDGVDFADPI 191 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + L++ LE GY P KK++ ++F R L +EE+ LLRGI + Sbjct: 192 AVAAMLEHWREGLEAIGYLDPAH-PKKLMPRFQALFARSRLRKEEIDLLRGIAKQM 246 >gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 257 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 8/253 (3%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCV 67 Q++ + II+V + ENIGM ARA N +L LV+P W EKAR ++A + + Sbjct: 7 QDALRHLEIIMVGTKFPENIGMAARACANTGCGRLTLVSPA-WWDKEKARPLATAKGEPL 65 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D++ V L +A+A + TTAR + +L P++AA + + G V I+FG Sbjct: 66 LDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHEGSRVAIVFGC 125 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNV----KE 182 E GL+N +I +++ P SLN++QA+L++ +ECM+ S V + ++ + Sbjct: 126 EDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSRVDPQPSLGNDPGQ 185 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 Q+ T E L+ +L Y + + L L + L R E+ +L GI Sbjct: 186 QSRRITHEEQALLYARLKETLLAIDYLKS-DNPDYFLMPLRRFLGKSGLRRHEMDMLMGI 244 Query: 243 VSTLDKFSRQSSR 255 +D +++ + Sbjct: 245 CRQVDNLRKEAGK 257 >gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 287 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ S R Sbjct: 29 VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLASAR 88 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A A TAR R + P+ AA + + S V +FG ER+G Sbjct: 89 VVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185 L N+ + + + P NP + SLN+SQAV L+ +E + ++ + V Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 208 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P K KK++ L +F R +L EEV +LRGI Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267 Query: 246 L 246 + Sbjct: 268 M 268 >gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 8/242 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S KA+ + +D ++F N Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDN 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE---AAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ AI D + A+ R + SV E + I+ E+I N+ IIFGRE GL+ Sbjct: 72 LENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKI---NNLAIIFGREDRGLS 128 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N E+ L+N + P + PSLN+S AV ++++E ++S + K ++ N ++K Sbjct: 129 NNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFNLASSKQIHD 188 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 SF++ E+ L GY K K + + R E+ +LRGIV ++ F S Sbjct: 189 SFVEIEEMLL-GVGYLLEHTSKAK-ISKFKNYLSRANTTMHEINVLRGIVHQINWFLNNS 246 Query: 254 SR 255 R Sbjct: 247 KR 248 >gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12D] gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] Length = 294 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ R Sbjct: 36 VLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHADAVAMASGADDVLAGAR 95 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A A TAR R + P++AA + + + V +FG ER+G Sbjct: 96 VVDDIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAALLAAPDTTVAFVFGNERFG 155 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185 L NE + + + P NP + SLN+SQAV L+ +E + + V Sbjct: 156 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAGTGTGDTRMDGVGFVGE 215 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ ++LE L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 216 PATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 274 Query: 246 L 246 + Sbjct: 275 M 275 >gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] Length = 326 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ S R Sbjct: 68 VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLASAR 127 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A A TAR R + P+ AA + + S V +FG ER+G Sbjct: 128 VVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 187 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185 L N+ + + + P NP + SLN+SQAV L+ +E + ++ + V Sbjct: 188 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 247 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P K KK++ L +F R +L EEV +LRGI Sbjct: 248 PATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEEVNILRGIAKR 306 Query: 246 L 246 + Sbjct: 307 M 307 >gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] Length = 244 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P + E++ S V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPPQCG----EKLIAEASQHTVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191 N+E+ L + + P NP + SLN++ AV L+ +E S+ S+ +++ E Sbjct: 123 NDELQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894] Length = 228 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM T+LR+V + AR + A ++D+ R + Sbjct: 5 IILVSPARPENVGAAARAMKTMGFTELRIVA-SEAHLDPAARRVAHGAGDILDNTRHYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ++ F ATTAR+R F P++ +L E+ ++FGRE GLTN+E Sbjct: 64 LAAALEEVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia psychrerythraea 34H] Length = 273 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 27/258 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+QL LV+P + P+ +A++ +A A V+ + +V S Sbjct: 23 IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIE-MPNGQAQAMAAGATDVLANAKVVST 81 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L EAI D + T+AR+R +L P+ E++ + + V ++FGRE GLT Sbjct: 82 LAEAIEDCGLVVGTSARSRTLPWPMLEPRGCG----EKMIAEADEYPVALVFGRENSGLT 137 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PA 187 NEE+ L + + P NP + SLN++ AV + +E + +++ ++N +E++T Sbjct: 138 NEELQLCHFHVQIPANPEYSSLNLAMAVQTLSYEVRTSYLLAHDQNYQERSTGNGNSIAK 197 Query: 188 TKG----------ELLSFLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEV 236 TK E F + E +L+ G+ VE + + L +F R +E+ Sbjct: 198 TKNEDDELYPVIEETERFYQHFEKALKATGFI--VENHPGLVMTKLRRLFNRARPDVKEI 255 Query: 237 FLLRGIVSTLDKFSRQSS 254 ++RGI +++++ S++ S Sbjct: 256 KMMRGIFASMERSSKEKS 273 >gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC 9905] Length = 228 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 3/188 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV ENIG ARAM ++LR+V+ + D VID+++VF Sbjct: 5 IILVALARAENIGAAARAMKTMGFSELRIVDSQAHLEPAIRWVVHGFGD-VIDNIKVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + S+ + A + +++ Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183 Query: 195 FLDYLEIS 202 L L ++ Sbjct: 184 LLTTLAVA 191 >gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 250 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 24/250 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +AR + + RVF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCRVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129 L++A+ D + A+ R + K++ V +E IF N+ IIFGRE Sbjct: 72 LQKAVFDCDLVLASCGR-------IDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFGRED 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ----NT 185 GLTN E+ L+N + P + PSLN+S AV ++++E + SS+KN+ + N Sbjct: 125 RGLTNNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYELNK----SSKKNLNNESRAFNL 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 ++K +F++ E+ L GY K K + + +R E+ +LRGIV Sbjct: 181 ASSKAVHDTFMEIEEM-LMRVGYLLKHTSKAK-ISKFKNFTLRANTSMHEINVLRGIVHQ 238 Query: 246 LDKFSRQSSR 255 ++ F S + Sbjct: 239 INWFLNNSKK 248 >gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] Length = 244 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 19/241 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPA 187 N+E+ L + + P NP + SLN++ AV L+ +E ++ S+ SS ++ P Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSS---TLQEEYPR 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ Sbjct: 180 HQ-ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRVFTRARPEAQEINILRGILTSVQ 237 Query: 248 K 248 K Sbjct: 238 K 238 >gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] Length = 242 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV P ++ +S AD ++++ V ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNAL-VVNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTN 134 L+EA+AD + ++AR+R +L P E A + + GQ +V ++FGRER GLTN Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECA---EKFVQEGQTSHVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGEL 192 +E+ + + P NP + SLN++ AV + +E + + Q T EL Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K Sbjct: 183 ELFYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEK 237 >gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 246 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 6/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P S ++ AD V+++ ++ Sbjct: 7 VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAAD-VVENAKIVET 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135 L EA++D + ++AR+R L P+E I V+ E NV I+FGRER GLTNE Sbjct: 66 LDEAVSDCGLVVGSSARSRTLEWPQLDPRENGIKVVAES--EHHNVAILFGRERTGLTNE 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS- 194 E+ + + P NP + SLN++ AV + +E + S + K Q + E L Sbjct: 124 ELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLESQKHTGKTQVEEYPRAEELER 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + F ++ L +F R ++E+ +LRGI+S+++K Sbjct: 184 FYVHLE-HVTRQTRFINKNHPGMVMAKLRRLFTRARPEQQELNILRGILSSVEK 236 >gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++ +V+ + Sbjct: 9 VILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKAKVYED 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134 L A++D I AT R + + + K+A ++ +ER + + ++FGRE GL+N Sbjct: 69 LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWVLKSER---EETIALVFGREDRGLSN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ +N +IS + +PSLN+S AV +++ + + + + K + ++PA +L Sbjct: 126 EELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKKHTKTSSPANLIKLED 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 ++ L + G+ K KM + + +R E+ +EV L+RGI+S Sbjct: 186 CINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIIS 234 >gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 242 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV P ++ +S AD ++++ V ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNAL-VVNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTN 134 L+EA+AD + ++AR+R +L P E A + + GQ +V ++FGRER GLTN Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECA---EKFVQEGQTSHVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGEL 192 +E+ + + P NP + SLN++ AV + +E + + Q T EL Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K Sbjct: 183 ELFYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEK 237 >gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] Length = 318 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 14/233 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----DGWPSEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR P +A +S AD V+ + V Sbjct: 76 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMAS--GADDVLAAAHV 133 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+A +H+ A TAR R LAP+ A+ + ++ ++FG ER GL+ Sbjct: 134 VPTLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAA-GDIALVFGNERTGLS 192 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATK 189 N ++ N + P NP + SLN++QAV ++ +E ++ + + V P Sbjct: 193 NADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELRLALLDTAPQTPPAGVASPLAP--H 250 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 E+ +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 251 DEIERMFVHLENALIALDFLDPA-SPKKLMPRLRRLFARAGLEREEVNIVRGI 302 >gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] Length = 225 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 131/234 (55%), Gaps = 15/234 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P+ NIG ARAM NF L+ LR+ P+ + ++ A+ ++ ++F Sbjct: 3 TIILVKPRNPNNIGASARAMANFGLSDLRIAGAH--IPNLEEAQAAVGAEDLLKKAKIFD 60 Query: 76 NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL++A+AD +F +A T+ +NRN K +++ +N I G+ + ++FG E+ GL+ Sbjct: 61 NLQDALADCNFAFAATSLKNRNTQKEIVSLPN----INNHIKRGK-IAVVFGSEKTGLSV 115 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGEL 192 ++I L +A+++ P PS+N++QAV L+ C E + + K +K+Q T P+ K Sbjct: 116 KDIELCDAVLNIPTTTKQPSVNLAQAVNLV---CYETAKTKNFKTLKQQKTNLPSFKDID 172 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 L D LE+ + + + + + K + L + +I L ++++F+++ ++ L Sbjct: 173 LLTADILEL-FDRKEFKKELTKTDREL-LIKNILKSSSLSKKQLFIIKKFLNLL 224 >gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola ehrlichii MLHE-1] Length = 260 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG VARAM L +L LV P +P E+A ++++ AD V+++ N Sbjct: 16 IVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEAAGRHDN 75 Query: 77 LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGL 132 L A+A + +AR R VL +EA R+ + + V ++FGRER GL Sbjct: 76 LDAALAGCGLVMGLSARPRRITTAEVLDVREA----GRRVVAEAESRPVALLFGRERSGL 131 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TN E+ A++ P NP + SLN++ AV ++ C E ++ V A+ ++ Sbjct: 132 TNAELDRCQALVHIPANPEYGSLNLAAAVQVV---CHEVNMARGAGVVAPTRRSASAQDM 188 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 F ++L + G+ R + ++ L +F R E+ +LRG+++ ++ Sbjct: 189 EYFFEHLARVADRVGFLRK-HNPEILMRRLRQLFYRAAPDDHELQMLRGLLANVE 242 >gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. CC9311] Length = 243 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 8/243 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VAR N+N+ LRLV PR +A + + D V+ +F + Sbjct: 5 VVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIFPS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD + A+ R + + +P+E A + G ++FGRE GL+N+E Sbjct: 65 LIEAVADCQQVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDRGLSNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194 + +S+ + ++PSLN+S AV +++ E +E K V PA+ EL Sbjct: 125 LLISHRVFKLHTGDVYPSLNLSHAVAVVLHE-LERERRLRAKPVAPVISEIPASAPELDG 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L E L E G+ +M + + R + +EV LLRG+V L R ++ Sbjct: 184 CLRDAEDLLLEVGFLLEHTASARMA-KVKGLVQRALIRSDEVALLRGMVRQL----RWAA 238 Query: 255 RRN 257 RRN Sbjct: 239 RRN 241 >gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca] gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 255 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 11/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M N LTQ+ LV+P S +A++ + +A V++S ++ + Sbjct: 15 IVLVEPAGALNVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVLESAQIVDS 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ ATTAR+R+ +++ P+ L + +IFG E GL+N E Sbjct: 75 LPQALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLQ-----SPAALIFGPEDRGLSNTE 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP--ATKGE 191 + + I+ P + + SLN++QAV + +E + I SS E + P AT + Sbjct: 130 LNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDSSTLPTPEPSEPLSATLDQ 189 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L + LE L + GY P +M + +F R + EV +LRG++S ++ Sbjct: 190 LEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVISQVE 244 >gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] Length = 251 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 9/231 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARAM L+QL LV P+ +P +A + ++ A ++D+ +V + Sbjct: 13 IVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPKS-FPHAEATAMASGATDILDNTQVCAT 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+ +AR R +++ + + I + + V I+FG E GL+N Sbjct: 72 LAEALHGTTLAIGMSARRRELSHELVSARTG---VQRAIEAAHDAPVAIVFGTEMSGLSN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E+ + P NP + SLN++ AV ++ +E + +++ + ++ P AT E+ Sbjct: 129 AELDHCQLLAMIPANPEYSSLNLAAAVQVISYE-LRMAVLDHPGPTRTESAPLATSEEIE 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 +LE L E G+ P + K+++ L ++ R L +EEV +LRGI+S Sbjct: 188 RLYAHLEQVLIEIGFLNPAQ-PKRLMQRLRRMYGRARLEKEEVNILRGILS 237 >gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB] gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB] Length = 263 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L+ + + ++L P+ NIG AR N + +L +V+ R+ E + S+ Sbjct: 9 PRIMNLKATLEHIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDREYRQEEIRQMSTH 68 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A V+DS+ F +L EA++ ++I TTAR V++P+E A + E I V Sbjct: 69 LAADVVDSIVYFRDLGEALSGFNYIVGTTARLGLARGPVVSPREMAEQVIE-ISRDNEVA 127 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG E GLTN+++ + ++S P + F SLN+S AV+++ +E I +E + Sbjct: 128 LLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYE-----ISVAETGIPV 182 Query: 183 QNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + TP A+ EL ++ L++ G+ P E + + + +F R L +EV ++R Sbjct: 183 RFTPKMASSRELEGMYGHIGALLQKIGFLNP-ENPEYWMMHIRRLFSRIRLQAKEVRIIR 241 Query: 241 GIVSTL 246 GI L Sbjct: 242 GICRQL 247 >gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329] Length = 239 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + + +V S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAADIAQNAQVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EAI D + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATKGE 191 EE+ + + P NP + SLN++ AV + +E + +K V+ + P K E Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQKQFSPVEVEEYPRHK-E 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F D+LE + E + E+ ++++ L +F R +E+ +LRGI+++++K Sbjct: 182 LEMFFDHLEKVIVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237 >gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina MBIC11017] Length = 250 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 15/236 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M N L QL LV P +A+ S +A V+ + Sbjct: 11 IVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVLYQAKTVQT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + ATTAR R APK+ + I G+ +IFG E GL+NEE Sbjct: 71 LSEALVGCQRVVATTARQRRLQVVTQAPKQ----ILPWILEGE-AALIFGPEDRGLSNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-----SEKNVKE----QNTPA 187 + + A + P + + +LN++QAV + +E + ++ +E + E Q A Sbjct: 126 LYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQCLLMGLDNRPTEPRIAESDHLQVELA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ++ +F LE++L + GY P +M L +F R +L +E+ +LRG++ Sbjct: 186 PFQQMEAFYQALEVALLDIGYLHPHTATARM-QKLRQLFNRSQLSTQELAMLRGMI 240 >gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii SP-6] Length = 252 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 12/230 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 IL+ N+G ARAM L LV PR D E+ + ++ A ++ R+ + Sbjct: 11 ILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETVAMASGAADILVRARIVA 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ +H AT R+ P+E L G+ V +FG ER+G++NE Sbjct: 71 TLDEALEGIHVACATAMTPRDFGPPTSTPREHLPALAA---GGERVAFVFGSERYGMSNE 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192 E+ +S P P + SLN++QAV LM +E + VS+ ++ A+ E+ Sbjct: 128 EVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWRMALGGYDVSARTPAVQR---ASLDEV 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 L + + +L G+ P KK++ L + R L REEV +LRGI Sbjct: 185 QGALSHWQDTLVALGFLDPA-APKKLMPRLQQLLNRAALTREEVHILRGI 233 >gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 246 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P S ++ AD V+++ ++ Sbjct: 7 VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAAD-VVENAKIVKT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L EA+AD F+ ++AR+R L P+E I ++ + N V I+FGRER GLT Sbjct: 66 LDEAVADCGFVVGSSARSRTLEWPQLDPRENGI----KVVAESNLHPVAILFGRERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-EL 192 NEE+ + + P NP + SLN++ AV + +E + S + K + + EL Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLDSQKYTGKTEVEEYPRAQEL 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + F ++ L +F R ++E+ +LRGI+S+++K Sbjct: 182 EMFYEHLE-KVTRQTRFINKNHPGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236 >gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] Length = 244 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 19/241 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPA 187 N+E+ L + + P NP + SLN++ AV L+ +E ++ S+ SS ++ P Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSS---TLQEEYPR 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ Sbjct: 180 HQ-ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQ 237 Query: 248 K 248 K Sbjct: 238 K 238 >gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5] gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C5] Length = 254 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 13/158 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V D E+A + +A ++++ + +S Sbjct: 24 VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTSDVL-DEEAYIRAVHAKNILNNAKFYS 82 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAA---IVLNERIFSGQNVGIIFGRER 129 L++AI D+ F ATT +RN + + P+E A + LN R+ GI+FGRE Sbjct: 83 KLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGRL------GIVFGRED 136 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL NE + L + ++S P + +P +N+S AV ++++E Sbjct: 137 DGLKNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYE 174 >gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565] Length = 216 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 7/216 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M LTQL LV+P+ P + A + +A A V+ + R+ L +AIAD + T+AR+ Sbjct: 1 MKTMGLTQLVLVDPQ-ALPDDNAFALAAGASDVLANARIVPTLDDAIADCGLVIGTSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R +L P+EA + + G V ++FGRER GLTN+E+ + ++ P NP + Sbjct: 60 RTLSWPMLDPREAG---EKSVVEGMQHPVALVFGRERTGLTNDELQKCHYHVAIPANPDY 116 Query: 153 PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212 SLN++ AV + +E + +++ + +L F +LE +L + G+ Sbjct: 117 SSLNLAMAVQTLCYEVRMRWLQGQAAEPEDEMVYPSAAQLEGFYQHLEQTLMKTGFIAD- 175 Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + ++ L +F R E+ +LRGI++++ K Sbjct: 176 DHPGHVMSKLRRLFNRARPEAAELNILRGILTSVQK 211 >gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] Length = 228 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM LR+V+ + + AR + + ++D V + Sbjct: 4 TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQ 154 >gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 223 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 3/152 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V ILV+P GENIG ARA+ +QLRLVNP D A + +++ V++ + Sbjct: 4 VFILVEPARGENIGAAARAIKTMGFSQLRLVNPGD---MTAAHWVAHHSNDVLEQAMIVD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L +A+ D+ TAR+R + A ++ + S Q V I+FGRE GLT + Sbjct: 61 SLAQALVDVDLSIGCTARHRLQKDRYVDADHCAALVAGKGNSVQRVAIVFGREASGLTGD 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+ L + S P+ PSLN++QAV++ WE Sbjct: 121 ELGLCDLASSIPLAQQQPSLNLAQAVMIYAWE 152 >gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 246 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P ++ AD V+++ ++ Sbjct: 7 VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEVDGHTIALAAGAAD-VVENAKIVKT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQN-VGIIFGRERWGLTN 134 L EA+AD F+ ++AR+R L P+E I V+ E S Q+ V I+FGRER GLTN Sbjct: 66 LDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAE---SNQHPVAILFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193 EE+ + + P NP + SLN++ AV + +E + S + K + + EL Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVRMAYLDSQKYTGKTEVEEYPRAQELE 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + F ++ L +F R ++E+ +LRGI+S+++K Sbjct: 183 MFYEHLE-KVTRQTRFINKNHPGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236 >gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638] gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 228 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM LR+V + R + + +ID++ ++ Sbjct: 5 IVLVSPARAENIGAAARAMKTMGFNDLRIV-ASEAHLEPATRWVAHGSGEIIDNISTYAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L E+ ++FGRE GLTNEE Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + L++ + P+ +PSLN+ QAV++ ++ Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVYCYQ 154 >gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] Length = 228 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM LR+V+ + + AR + + ++D V + Sbjct: 4 TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+AL++ + P+ +PSLN+ Q+V++ ++ Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQ 154 >gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] Length = 309 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2] gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis S2] Length = 234 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 97/158 (61%), Gaps = 13/158 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---SEKARSSSANADCVIDSVR 72 V+ILV+P+ G N+G +AR M NF++ +LR+V G P ++A + +A ++++ + Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIV----GTPEILDDEAYIRAVHAKNILNNAK 59 Query: 73 VFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +S L++AI+D+ F ATT +RN + + P+E A SG +GI+FGRE Sbjct: 60 FYSKLEDAISDIDFTVATTGAVCGDRNVNRVPITPRELA--KKHSSISGT-LGIVFGRED 116 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL NE++ L + ++S P + +P LN+S AV ++++E Sbjct: 117 DGLKNEDVELCDILVSVPTSNKYPILNLSHAVSVILYE 154 >gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] Length = 309 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei B7210] gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106a] gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] Length = 311 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37] gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas ingrahamii 37] Length = 254 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 20/258 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 IIL+ N+G ARAM LT+L LV P DG K+ + SA A V+ + +V Sbjct: 7 IILIGTSHPGNVGSAARAMKTMGLTKLVLVTPECEIDG----KSIALSAGASDVLKNHKV 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERW 130 + L +AIAD + +AR+R +L P+E + +++ N V ++FGRE Sbjct: 63 CNTLDDAIADCGLVIGASARSRTLDWPMLDPRE----MGQKVVEEGNKHPVALVFGRENS 118 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTN+E+ + + P NP + SLN++ AV + +E + S + Q P Sbjct: 119 GLTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVRMEFLASKAYPEQPQEYPLAD- 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248 E+ ++LE +L++ G+ P M + L F RPE+ +E+ + RGI+S++ K Sbjct: 178 EIEGLFNHLEQTLKDTGFIVPAHPGLVM-NKLRRFFNRARPEV--KELRMWRGILSSVQK 234 Query: 249 FSRQSSRRNNVLLQKTEK 266 + + N +Q K Sbjct: 235 SVSSAEKEVNQSMQAKNK 252 >gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 14] gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 112] gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] Length = 301 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 250 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +VF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCKVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129 L++AI D + A+ R + K++ V +E IF N+ IIFGRE Sbjct: 72 LQKAIFDCDLVLASCGR-------IDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGRED 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN E+ L+N + P + PSLN+S AV ++++E ++S + +K N ++K Sbjct: 125 RGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +F++ E+ L GY K K + + +R + E+ +LRGIV ++ F Sbjct: 185 EVHDTFVEIEEMLL-RVGYLLKHTSKVK-ISKFKNFILRANTSKHELNVLRGIVHQINWF 242 Query: 250 SRQSSR 255 S + Sbjct: 243 LNNSKK 248 >gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 7894] gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei BCC215] gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei SAVP1] gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10229] gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10247] gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] Length = 228 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G +AR M NF +LR+V R +E A + +A ++D+ + + Sbjct: 5 VILVNPKYSGNVGSIARVMMNFGFEELRIVGDRSIINNE-AYMMAVHAREILDNAKFYKT 63 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132 EAI DL F+ AT+ +RN + + PKE A ++I + NVGI+FGRE GL Sbjct: 64 FDEAIEDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGNVGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NEEI + ++S P + +P +N+S AV ++++E Sbjct: 120 RNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 154 >gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei NCTC 13177] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 241 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 2/239 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + QLRLV PR +AR + + + +++ +++ Sbjct: 4 AVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQLYP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L AIAD + AT+ R + P A L + ++FGRE GL+N Sbjct: 64 DLAAAIADCQRVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGREDRGLSNA 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + ++ + + SLN+S AV + + E ++ + + +G L + Sbjct: 124 ELLQAGRLVRLATSEAYASLNLSHAVAICLHE-LQACRTTERTEPADLGNLCERGALEAT 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L E L E G+ P +M L ++ R ++ EV LLRG+V L +RQ + Sbjct: 183 LADAEALLLEVGFLYPHTAAARM-AKLRALLQRAQVQEPEVALLRGMVRQLRWAARQGT 240 >gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 668] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAQIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13] gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13] Length = 243 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 8/224 (3%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARA+ QL L+NP + +P E A + ++ A ++ +V S+L+E AD + Sbjct: 23 NIGSTARAIKTMGFAQLSLINP-EKFPHEDADALASGAKDLLQHAQVASSLEEVTADCNV 81 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAII 144 + TAR R + L+ +E A ++I +N ++FG E GL NEEI + + Sbjct: 82 LIGFTARKRELTQEHLSIEEIA----QKIIELKNNKFALLFGNETSGLKNEEIQHCHYLA 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204 N + SLN+SQAV + +E +N ++ AT E F ++LE +L Sbjct: 138 YIDANKEYSSLNLSQAVQVTAYELRKNFNKKEFDVAIKEKKLATFEEQNGFYEHLESTLN 197 Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E G+ ++ K+++ L +F R ++ +EV +LRGI++ + K Sbjct: 198 ELGFLEKIQ-GKRLMHRLRLMFNRIQMDEDEVNILRGILNQISK 240 >gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB] gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus vannielii SB] Length = 234 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 114/193 (59%), Gaps = 10/193 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NFN+++LR+V D ++ A + +A ++ + + + Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFNVSELRIVGNSDILDND-AYIRAVHAKDILKNAKFYK 62 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A++D+ ATT +RN + + P+E A N++ G +GI+FGRE GL Sbjct: 63 SLSNAVSDIDVTVATTGAVSGDRNIKRIPITPRELA--KNQKENEGT-LGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGE 191 NE++ L + ++S P + +P +N+S AV ++++E S+ S N++ +N + E Sbjct: 120 KNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIYYESVSSDIPYNLRMKNASKIEKE 179 Query: 192 LL--SFLDYLEIS 202 +L F ++++IS Sbjct: 180 MLLRFFNEFVDIS 192 >gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] Length = 255 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 12/249 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV P N+G VAR NF + +LRLV P A+ + + +++ ++ Sbjct: 8 VLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRALIYP 67 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+AD + A + R + P+EA L G + ++FGRE GL+N Sbjct: 68 NLVSALADCRRVVACSGRINKEVLTTNVPEEALSWLLTTEVDGPS-ALVFGREDRGLSNN 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-----NSIVSSEKNVKEQNT----- 185 E+ L+ ++ +P + S+N+S AV ++++E + N ++ ++ Q+T Sbjct: 127 ELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRNSSNHTSIAKGDLCLQSTMILED 186 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT+ L FL E+ L + G+ P + +M L ++ R ++ EV LLRG+V Sbjct: 187 PATRLALEGFLSDTELLLLKVGFLYPNTARARM-KKLKTLLQRSQITGGEVSLLRGMVRQ 245 Query: 246 LDKFSRQSS 254 L +R+ S Sbjct: 246 LHWANRRHS 254 >gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] Length = 243 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 131/239 (54%), Gaps = 15/239 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIVPT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P++ E++ S V ++FGRER GLT Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189 N+E+ L + + P NP + SLN++ AV L+ +E + + ++ ++N ++ Q P + Sbjct: 122 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYE-VRMAFLAMDQNQRQEQRDQEYPRHQ 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 181 -ELELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 237 >gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] Length = 268 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 23/236 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEKARSSSANADC 66 NIG ARAM L +L LV P P E +S D Sbjct: 26 NIGAAARAMKTMGLNRLTLVAPNLMATPMTPEPPTFDAAQAAAFQLPEESFILASGARD- 84 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V++ ++ ++L EA+AD A T+R R + P+E L + G V ++FG Sbjct: 85 VLEQAQIVASLDEALADTVLSCALTSRRRELSAPLHTPRELVPELLQAAQQGFQVALVFG 144 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E +GL +E+ N +++ NP + SLN++QAV ++ +E + + + +++ +TP Sbjct: 145 NETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCYEIFSQTGIGMSQ-LQQAHTP 203 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT+ + +D+LE +E+ G F +++M+ L+S+F R RE++ LLRG+ Sbjct: 204 ATQSQTRGMVDHLEQIIEQTG-FANRRNQERMMRRLHSLFDRASPSREDIDLLRGL 258 >gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710b] gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] Length = 346 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 68 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 186 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 246 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 296 >gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6] gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C6] Length = 234 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 95/155 (61%), Gaps = 7/155 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V D E+A + +A ++++ + +S Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTSD-ILDEEAYIRAVHAKNILNNAKFYS 62 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI D+ F ATT +RN + + P+E A + + ++GI+FGRE GL Sbjct: 63 KLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELA---KKHLDLNGSLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NE++ + ++S P + +P +N+S AV ++++E Sbjct: 120 KNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYE 154 >gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] Length = 338 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 68 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 186 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 246 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 296 >gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 23344] gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] Length = 306 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 36 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 95 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ ++FG ER GL+NE Sbjct: 96 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 154 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 155 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 214 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 215 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 264 >gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] Length = 239 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 19/241 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + + S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAAIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EAI D + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPAT----- 188 +E+ + + P NP + SLN++ AV + +E + + N+++ Q TP+ Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYE-----VRVAHLNLEQSQYTPSEPEEYP 177 Query: 189 -KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL F ++LE + E + E+ ++++ L ++ R +E+ +LRG+++ ++ Sbjct: 178 RHKELEMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIE 236 Query: 248 K 248 K Sbjct: 237 K 237 >gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7] gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C7] Length = 234 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 96/155 (61%), Gaps = 7/155 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V + E+A + +A ++++ + +S Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVGNSE-ILDEEAYIRAVHAKNILNNTKFYS 62 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI D+ F ATT +RN + + P+E A + + ++GI+FGRE GL Sbjct: 63 TLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELA---KKHVELNGSLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NE++ L + ++S P + +P +N+S AV ++++E Sbjct: 120 KNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYE 154 >gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis EO147] gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis C6786] Length = 291 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 9/232 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 36 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEALAMASGADDVLASAHVVP 95 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA ++ +G ++ ++FG ER GL+NE Sbjct: 96 TLADALNGVQWSIALTARSREYGPPRLAPRAAAASARRQLQTG-DIALVFGNERTGLSNE 154 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPATKGE 191 + +AI P NP + SLN++QAV ++ +E + +++ + +V ++ T A E Sbjct: 155 HVDRCSAIAHIPANPAYSSLNLAQAVQVLAYE-LRVALLEDDASVMPRDAALGTLAQSDE 213 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + +LE +L + P KK++ L +F R L REEV +LRGI Sbjct: 214 IERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 264 >gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 282 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 17/243 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+ L NIG RAM L++L LV P+ +P + +A A +I+ + + Sbjct: 18 IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATDLIEQIEIVET 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135 L++AI D ++ T+AR+R +L + AA + + Q V I+FGRE GLTNE Sbjct: 77 LEDAIKDCQIVFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILFGREDRGLTNE 136 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVK-----------E 182 E+A++N ++ PVN + LN++QA+ ++ +E ++ + ++ K E Sbjct: 137 ELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATMSQIEQPRDAKATMQVIDGIEME 196 Query: 183 QNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + P ++ F +LE L E + P + + + L +F R +L R E LLRG Sbjct: 197 WDEPLVNHAQMEQFYPHLEKMLAEIEFMDP-KNPRLLPLRLRRLFGRIQLDRMEYHLLRG 255 Query: 242 IVS 244 I S Sbjct: 256 IFS 258 >gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 287 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ R Sbjct: 29 VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLAGAR 88 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A A TAR R + P+ A + + S V +FG ER+G Sbjct: 89 VVDDIGEALAGAALTIALTARPREFGPRRIGPRVVAEEVAALLASPDATVAFVFGNERYG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185 L N+ + + + P NP + SLN+SQAV L+ +E + + V Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 208 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267 Query: 246 L 246 + Sbjct: 268 M 268 >gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 241 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P+ + ++ AD ++ + + + Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCEIDEQAIALAAGAAD-IVQAALIVNT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD + ++AR+R +L P+E E+ Q V ++FGRER GLTNEE Sbjct: 66 LNDAVADCSLVVGSSARSRTLEWPMLEPRECGKKFVEQGAMSQ-VALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGELL 193 + + + P NP + SLN++ AV + +E + + + +++ + N A EL Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYE-VRMAYLEKQQSQYQPNEVAEYPRHKELE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + F E+ K+++ L +F R +E+ +LRG++++++K Sbjct: 184 MFFSHLE-KVATKTQFISDEQPGKVMNKLRRLFNRARPEAQELNILRGVLTSIEK 237 >gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family) [Pseudoalteromonas haloplanktis TAC125] Length = 241 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 8/235 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM L++L LV+P S A + +A A V+ + + Sbjct: 8 VVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALAAGASDVLGNAVIVDT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +AIAD T+AR+R ++ P+E L +G V ++FGRE GL+N+E Sbjct: 67 VADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVSEAVNGP-VALVFGRENSGLSNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194 + L N + P NP + SLN++ AV + +E + K +E +T P++K L Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKIAEEDDTVYPSSKQTEL- 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE +L G+ +++ M + L +F R E+ +LRGI+++++K Sbjct: 185 FYGHLEETLFNTGFI--IKQHPGMVMTKLRRMFNRARPEDAEMNILRGILTSINK 237 >gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] Length = 317 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 24/263 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G VAR + N L QL VNP+ E+A+ + +A ++++ + + Sbjct: 11 IILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADLLETATITAT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ ATTAR R+ + P+ L E +IFG E GL+NEE Sbjct: 71 LPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLE-----TPSALIFGPEDRGLSNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSE--------KNVKEQN 184 + + + P + +P+LN++QAV + +E + N +S+E + V Sbjct: 126 LKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASAASRPVSSPI 185 Query: 185 TPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 PA+ L F ++LE L GY P +M + +F R +L + EV +LRG Sbjct: 186 QPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASRM-EKFRRLFNRADLSQTEVNMLRG 244 Query: 242 IVSTLD---KFSRQSSRRNNVLL 261 I+S ++ ++QS ++ L+ Sbjct: 245 ILSQMEWALNSTQQSGTVDDTLI 267 >gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25] gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25] gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] Length = 239 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + ++ Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EA+ D + ++AR+R +L P+E + G+ V ++FGRER GLTN Sbjct: 66 LEEAVEDCSLVVGSSARSRTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191 EE+ + + P NP + SLN++ AV + +E + + ++ E++ N P E Sbjct: 123 EELQRCHYHVCIPANPEYSSLNLAMAVQTLSYE-VRVAHLNLEQSQFAPNEPEEYPRHRE 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE + E + E+ ++++ L +F R +E+ +LRGI+++++K Sbjct: 182 LEMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237 >gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] Length = 255 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 21/241 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G AR M N LTQ+ LVNP S +A++ + +A V++S ++ + Sbjct: 15 IVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVLESAQIVDS 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ATTAR+R+ +++ P+ L +IFG E GL+N E Sbjct: 75 LPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLH-----SPAALIFGPEDRGLSNTE 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----------P 186 + + I+ P + + SLN++QAV + C E S+ S + + +QNT Sbjct: 130 LNYAQRIVRIPSSSAYESLNLAQAVAVC---CYELSL--SAQTLIDQNTLPSPEPSEPLS 184 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT +L + LE L + GY P +M + +F R + EV +LRG++S + Sbjct: 185 ATLDQLEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVISQV 243 Query: 247 D 247 + Sbjct: 244 E 244 >gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] Length = 278 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +ILV+P G N+G +AR M NF + LR+V P + + +++ ++++V ++S Sbjct: 11 AVILVEPIYGGNVGAIARIMHNFCFSDLRIVGK---VPEKNDFYLAMHSEEILENVNIYS 67 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L++AI L + A + R N P + A ++ N+G++FGRE +GLT+ Sbjct: 68 TLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYVHS--LPDSNIGLVFGRETYGLTDS 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E L F NP FPSLN++QAV L +WE +K K N+ + K EL Sbjct: 126 EAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNSASGK-ELDEI 184 Query: 196 LDYLEISLEERGYFR 210 +Y+ + + G+F+ Sbjct: 185 RNYILEVMRQCGFFQ 199 >gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 244 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191 NEE+ L + + P NP + SLN++ AV L+ +E ++ S ++ Q E Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLAMQQSSQSSTLQEEYPRHQE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 183 LERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 266 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 4/235 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G AR M N L++L +VNP E+AR + + V+++ + Sbjct: 17 IILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVLENCSRVAT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ H I ATT++ R+ + P+ A L + +IFG E GL+N E Sbjct: 77 LGEALQGCHRIIATTSKPRHLNTPLETPRAALPWL---LTPNLESALIFGPEDRGLSNSE 133 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP + SLN++QAV + +E + + + + E AT L + Sbjct: 134 LNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQRATENRLEPPLETPPNATFEALEGYY 193 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +LE L + GY P +M + + R EE+ LLRGI+ ++ + Sbjct: 194 QHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIESIGQ 247 >gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM 2661] gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 9/155 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G +AR M NF +LR+V + +E A + +A ++D+ + ++ Sbjct: 7 VILVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFYNT 65 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132 EAI DL F+ AT+ +RN + + PKE A ++I + N+GI+FGRE GL Sbjct: 66 FDEAIGDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGNIGIVFGREDDGL 121 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NEEI + ++S P + +P +N+S AV ++++E Sbjct: 122 RNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 156 >gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] Length = 287 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 +LV+ N+G ARA+ + LV PR D A + ++ AD V+ R Sbjct: 29 VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLAGAR 88 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V ++ EA+A A TAR R + P+ AA + + S V +FG ER+G Sbjct: 89 VVDDIGEALAGASLTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185 L N+ + + + P NP + SLN+SQAV L+ +E + ++ + + Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGIGFVGE 208 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PAT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267 Query: 246 L 246 + Sbjct: 268 M 268 >gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205] Length = 239 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF++ +LRLV PR +AR + + + +++ ++F Sbjct: 4 AVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQLFP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLT 133 L+ A+AD + AT+ R + P EA + +E ++FGRE GL+ Sbjct: 64 TLEAALADCRRVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGREDRGLS 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N E+ + I+ + + S+N+S AV + + E + Q P + +L Sbjct: 124 NAELLQAGRILRLETSEAYASMNLSHAVAVCLHE-----LRRCPAPTAPQPEPCQREQLE 178 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + L E L E G+ P + +M L ++ R E+ EEV LLRG+V L R + Sbjct: 179 AALSDAEELLLEVGFLYPHTAQARM-AKLRALLQRAEIRDEEVALLRGMVRQL----RWA 233 Query: 254 SRRN 257 S+R+ Sbjct: 234 SQRD 237 >gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] Length = 232 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 22/188 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G +AR NF++ QL +VNP+ +KA+ SA + ++ +V Sbjct: 4 VILVEPEGEYNVGFIARLCKNFDVDQLYIVNPK--CDLDKAKQFSAKGNTFLERAKVVDK 61 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++AI DL +T++ + + +AP E + ++ R VG++FGRE GLT Sbjct: 62 LEDAIEDLDLKISTSSIADSKGDMLRKSMAPWEISSLIGRR-----QVGLVFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVKEQNTPATK 189 EEIA+++ ++ P N +P LN+S AV ++++E ++ + +S++ NV Sbjct: 117 REEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWKSKVNENRISNDMNV--------S 168 Query: 190 GELLSFLD 197 E L F+D Sbjct: 169 SETLGFID 176 >gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 235 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G V+IL PQ NIG V RAM N +LRLV P P A + + D V+ + Sbjct: 2 EGIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEPPPFDPDLIA-AVAHRPDPVLTRLT 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + S+L +A AD+ ++ T+ R N ++ A+ L+ R V ++FG E GL Sbjct: 61 IHSDLADATADIRYLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + EE++ + II P+NP +P+LN++QAVLL+++E + Sbjct: 121 SREELSRCHEIIGLPINPAYPTLNLAQAVLLILYELQQ 158 >gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans K601] Length = 270 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 28/260 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 IL+ N+G ARAM L LV PR WP+ E+ ++ A V++ R Sbjct: 15 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLERAR 72 Query: 73 VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPK---------EAAIVLNE 113 + + L EA+ + + AT T R+ R +F+ +L + EA +N Sbjct: 73 IVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAIEADSAINP 132 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 SG V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 133 EPESG--VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYEWRQALG 190 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 + + Q A +L L + E +L G+ P KK++ L +F R +L + Sbjct: 191 GFAVQESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQ 249 Query: 234 EEVFLLRGIVSTLDKFSRQS 253 EE+ +LRG+ ++ + +R S Sbjct: 250 EEIHILRGVAKSMLQAARPS 269 >gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 16/247 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +VF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCKVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129 L++AI D + A+ R + K++ V +E IF N+ IIFGRE Sbjct: 72 LQKAIFDCDLVLASCGR-------IDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGRED 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN E+ L+N + P + PSLN+S AV ++++E ++S + +K N ++K Sbjct: 125 RGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +F++ E+ L GY K K + + +R E+ +LRGIV ++ F Sbjct: 185 EVYDTFVEIEEMLL-RVGYLLKHTSKVK-ISKFKNFILRANTSIHELNVLRGIVHQINWF 242 Query: 250 SRQSSRR 256 S ++ Sbjct: 243 LNNSKKK 249 >gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus denitrificans BC] gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans BC] Length = 270 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 28/258 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R Sbjct: 15 FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLENAR 72 Query: 73 VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPK---------EAAIVLNE 113 + + L EA+ + + AT T R+ R +F S+L + EA +N Sbjct: 73 IVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEADSAMNH 132 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +G V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 133 GPEAG--VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEWRQALG 190 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 Q A +L L + E +L G+ P KK++ L +F R +L + Sbjct: 191 GFGVPESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQ 249 Query: 234 EEVFLLRGIVSTLDKFSR 251 EE+ +LRG+ ++ + +R Sbjct: 250 EEIHILRGVAKSMLQAAR 267 >gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 239 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 17/240 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV P+ ++ + +A A + + V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVEPQ-CEVDDQTLALAAGAGDIAQNATVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EAIAD + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LEEAIADCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC------MENSIVSSEKNVKEQNTPAT 188 +E+ + + P NP + SLN++ AV + +E +E S + N E+ P Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAP--NAVEE-YPRH 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K EL F ++LE L + + E+ ++++ L ++ R +E+ +LRG++S ++K Sbjct: 180 K-ELEMFFEHLEKVLVDTQFINK-EQPGQVMNKLRRLYSRARPETQELNILRGVLSAIEK 237 >gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] Length = 252 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 93/182 (51%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL P+ EN+G VARA N ++L + + P A +++ ++ S + Sbjct: 5 AVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRSTEHYP 64 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL++A+ H ++AT+AR K V P +AA + Q+ ++FG E GL N Sbjct: 65 NLEQALKGFHRVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKGLANH 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 EI L IIS P SLN+SQAVLL+++EC ++ + +++ ++P E + Sbjct: 125 EIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKHVPAARTRHIPSWDSPPVTQEQMQL 184 Query: 196 LD 197 L Sbjct: 185 LH 186 >gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 266 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 4/235 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G AR M N L++L +VNP +E+AR + + V+++ + Sbjct: 17 IILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILAEEARRMAVHGIEVLENCSQVAT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ H I ATT++ R+ + P+ A L + +IFG E GL+N E Sbjct: 77 LGEALQGCHRIIATTSKPRHLNTPLETPRTALPWL---LTPNLESALIFGPEDRGLSNSE 133 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P NP + SLN++QAV + +E + + + + E AT L + Sbjct: 134 LNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQMATENRLEPPLEMLPNATFEALEGYY 193 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +LE L + GY P +M + + R EE+ LLRGI+ ++ + Sbjct: 194 QHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIESIGQ 247 >gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] Length = 247 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 9/242 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L+ NIG ARAM L+ LRLV+P +PS +A + ++ AD ++ V+ + Sbjct: 9 IVLIQTSHPGNIGASARAMKTMGLSDLRLVSPVR-YPSAEATAMASGADDLLAGTPVYED 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ + T+AR R+ L P+EAA L E + V ++FGRE+ GL+NEE Sbjct: 68 LDEALTGCRLVMGTSARQRSLRWPQLNPREAAAALIEAAAQ-RPVALLFGREQSGLSNEE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------VSSEKNVKEQNTPATKG 190 + +++++ P N + SLN++ AV ++ +E ++ V + ++ ++ PA+ Sbjct: 127 LDRCHSLVTIPANEAYSSLNLAAAVQVLSYELRMAALERQAPAVDTSADLAPEDQPASAE 186 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L F +LE +L + P + +L L ++ R EV +LRGI++ +K Sbjct: 187 ALEDFYAHLERALIHLDFLDP-NNPRHLLRRLRRLYGRAVPTVSEVNILRGILTAAEKGP 245 Query: 251 RQ 252 R+ Sbjct: 246 RR 247 >gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 254 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 19/243 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADCVIDSVR 72 IL++P N+G ARA+ +L LV PR W + R + + A+ V++ R Sbjct: 9 FILIEPSHAGNVGAAARAIKTMGFEELVLVRPR--WANVLRRQETIERASGANDVLNRAR 66 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERW 130 + L EA+ + + AT R+ AP+E A V Q + +FG ER+ Sbjct: 67 IVETLDEALDGMTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERY 126 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 G+ NE++ ++ +S P +P F SLN++ A+ ++ +E + S + + PAT Sbjct: 127 GMKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQ---ALSARFGGFEIAPATAP 183 Query: 191 ELLS-------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +L+ L +LE +L + P KK++ L ++F R +L +EEV +LRG+ Sbjct: 184 SVLADAPQIAGLLTHLEQALVAVDFLDPA-APKKLMPRLNALFNRAQLTQEEVHILRGVA 242 Query: 244 STL 246 + Sbjct: 243 KAM 245 >gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 19/241 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 NEE+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLE---ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL F +LE I E F ++ ++++ L +F R +EV +LRGI++++ Sbjct: 182 ELERFYAHLEQVIIQTE----FISAQQPGQVMNKLRRMFTRARPEAQEVNILRGILTSVQ 237 Query: 248 K 248 K Sbjct: 238 K 238 >gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3] gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus Nankai-3] Length = 231 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV+P+ G N+G ++R M NF + +L++V + ++A + ++ ++++ + + Sbjct: 3 PVIILVNPKYGGNVGAISRCMMNFGVNELKIVG-NNSIIDKEAEIRAVHSKKILNNAKFY 61 Query: 75 SNLKEAIADLHFIYATTA--RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ D+ F T+ N K + + PKE A + G+ +G++FGRE +G Sbjct: 62 GTLQEALEDIDFAVGTSGAVSGDKNIKRIPITPKELA--EKHKTIDGR-LGLVFGREDYG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L N+E+ L + +S P + +P +N+S AV ++++E +S+ S Sbjct: 119 LYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYNSSLEKS 163 >gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36] gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36] Length = 238 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM TQL LV P EK+ + +A A V+++ + Sbjct: 7 VVLVGTSHPGNIGSAARAMKTMGFTQLVLVAPLCEI-DEKSVALAAGAADVLENATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD + T+AR+R +L +EA + L E + V ++FGRER GLTNEE Sbjct: 66 LEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEV-PNYPVALVFGRERIGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-F 195 + + NP + SLN++ AV ++ +E + ++ EQ P K E L F Sbjct: 125 LQKCTYHVCVAANPEYSSLNLAMAVQILTYETRMAYLATN--TYPEQENPYPKQEELEMF 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE +L + G+ M + L +F R E+ +LRG + ++ + Sbjct: 183 HTHLEQTLWDSGFINKAHPGVVM-NRLRRLFTRARPETIELNILRGALVSIQR 234 >gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385] gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 244 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 NEE+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] Length = 244 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 NEE+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPESQEINILRGILTSVQK 238 >gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] Length = 226 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 7/154 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P+ G N+G VAR M NF +LR+V R +++A+ + +A +++ + + Sbjct: 4 VILVHPKYGGNVGSVARVMKNFGFKELRIVGDRK-IINDEAKMMAVHAKDILEKAKFYET 62 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI DL FI AT+ +RN + + P+E A + E N+G++FGRE GL Sbjct: 63 FDSAIEDLDFIIATSGARGGDRNLKRVPITPRELAEKIKE---VRGNIGLVFGREDDGLY 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NEE+ + ++S P + +P +N+S AV ++++E Sbjct: 120 NEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYE 153 >gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++ +V+ + Sbjct: 9 VILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKAKVYED 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI--VLNERIFSGQNVGIIFGRERWGLTN 134 L A++D I AT R + + + K+A + +ER + ++FGRE GL+N Sbjct: 69 LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWGLKSER---EDTIALVFGREDRGLSN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ +N +IS + +PSLN+S AV +++ + + + + K + ++PA +L Sbjct: 126 EELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKRHTKISSPANLIKLED 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 ++ L + G+ K KM + + +R E+ +EV L+RGI+S Sbjct: 186 CINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIIS 234 >gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] Length = 309 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 7/231 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LA + AA +++ +G ++ ++FG ER GL+NE Sbjct: 93 TLADALNGVQWSLALTARSREYGPPRLASRAAAASALQQVRTG-DIALVFGNERTGLSNE 151 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E V T A E+ Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +LE +L + P KK++ L +F R L REEV ++RGI Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261 >gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 226 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 3/189 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P++ EN+G ARA+ ++L LVN D +A + +D ++D+ R+F Sbjct: 4 AFVLVEPKVPENVGAAARALCTMGFSELWLVN-SDLHTRPEAHWLAHGSDHILDNARIFP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + T+A+ R++ + P VL + S ++FGRE GL NE Sbjct: 63 DLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDRGLANE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + FP+ +PSLN+SQAV+L WE + + + E + A+ G L Sbjct: 123 ELALCDLLTGFPMAVSYPSLNLSQAVMLYAWEL--SGLARQSNSTPEVASDASLGALRQR 180 Query: 196 LDYLEISLE 204 L+ L +LE Sbjct: 181 LETLLPALE 189 >gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] Length = 239 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L QL LV+P+ E+ + +A A + + ++ Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLNQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EA+ D + ++AR+R +L P+E + G+ V ++FGRER GLTN Sbjct: 66 LEEAVEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192 EE+ + + P NP + SLN++ AV + +E ++ S+ + E EL Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHREL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + E + E+ ++++ L +F R +E+ +LRG++++++K Sbjct: 183 EMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGVLTSIEK 237 >gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50] gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50] Length = 258 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 14/242 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+ P N+G ARA+ +L LV PR D +A + ++ A V++ V Sbjct: 11 IMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHD 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R+ +EAA + + + V I+ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184 N +I L + I P NP + SLN++QA+ L WE + SS + Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQPLLPASSAQQANPGA 190 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+ + Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249 Query: 245 TL 246 + Sbjct: 250 AM 251 >gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 13 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131 +E L ++ AT+ ++ FK + L P+E A V N FSG N+GI+FGRE +G Sbjct: 71 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 126 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L NEEI +++I+ P + +P +NI+ A ++++E Sbjct: 127 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 164 >gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus TPSY] Length = 264 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 28/255 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ R Sbjct: 5 FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62 Query: 73 VFSNLKEAIADLHFIYATTARNR-----------------NNFKSVLAPKEAAIVLNERI 115 + + L EA+ + + AT R NN S L K L + Sbjct: 63 IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARKP 122 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 123 SPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182 Query: 176 SEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 E +++ P A ++ L + E +L G+ P KK++ L +F R +L Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241 Query: 232 MREEVFLLRGIVSTL 246 +EE+ +LRG+ ++ Sbjct: 242 TQEEIHILRGVAKSM 256 >gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] Length = 288 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VAR M N L+QL LVNP+ S+ A+ + + +++ +V + Sbjct: 31 IVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVHGVDILEKAQVVAT 90 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + ATTAR+R ++ P+ A L + +G +IFG E GL+N+E Sbjct: 91 IPDGLVGCQRAIATTARSRAIPTTLEHPRTA---LPWLLSAGVTSALIFGPESRGLSNDE 147 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQN-TPATKGEL 192 + + + P + +P LN++QAV + +E + + S V Q +PA + Sbjct: 148 LNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQYQLYQSTHQPSPVPSQPLSPAPPYQD 207 Query: 193 LSFLD-------YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + LD +LE L + GY P K +M + L + R EE+ +LRG+V Sbjct: 208 SAPLDLIERYSNHLEALLLKIGYLYPHTKAARM-EKLRRLLNRATPTTEEINMLRGMV 264 >gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 235 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 5 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 62 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131 +E L ++ AT+ ++ FK + L P+E A V N FSG N+GI+FGRE +G Sbjct: 63 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L NEEI +++I+ P + +P +NI+ A ++++E Sbjct: 119 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 156 >gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 13 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131 +E L ++ AT+ ++ FK + L P+E A V N FSG N+GI+FGRE +G Sbjct: 71 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 126 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L NEEI +++I+ P + +P +NI+ A ++++E Sbjct: 127 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 164 >gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 236 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 20/244 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +V+P NIG +AR NF++ +LR+V+P+ S +A+ + I++ RVF++++ Sbjct: 1 MVEPNGPINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIE 60 Query: 79 EAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTN 134 +AI D + AT R + +N P+ V+++ I S + N+ I+FGRE GLTN Sbjct: 61 QAIFDCDLVLATCGRIDLSNDIECENPE----VISKWISSFKVINNLAILFGREDRGLTN 116 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+ ++ I + + +PSLN+S AV ++++E + S + +K++K N ++K S Sbjct: 117 SELLFAHKIFNIKTSQDYPSLNLSHAVAIILYELNKCSKNTPQKDLKVFNLASSKQIYES 176 Query: 195 FLDYLEI-----SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 F D EI L E F + K KK + ++ + E+ +LRGIV + F Sbjct: 177 FKDLEEILIRTGYLLEHTSFSKISKFKKFI-------LKAKTSSHEINVLRGIVRQIKWF 229 Query: 250 SRQS 253 S Sbjct: 230 LNNS 233 >gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.4-21] Length = 205 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 10/184 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + + ++ Sbjct: 7 IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--IDEQSYALSAGAEDIVKNAMIVNS 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A+ + + T+AR R+ +++ P+E A ++ I + I+FGRER GLTNEE Sbjct: 65 FDDAVKNCSLVIGTSARLRHLQNTLIEPRECA---DKVIAHKGKIAIVFGRERIGLTNEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKGEL 192 + + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P T +L Sbjct: 122 LLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP-TADQL 180 Query: 193 LSFL 196 FL Sbjct: 181 AYFL 184 >gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] Length = 226 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 12/225 (5%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M N L QL LV P+ +P E+A +A+A ++D+ V L++A+AD + T+AR Sbjct: 1 MKNMGLKQLYLVQPK-LFPHERAGWRAASAGDILDNAVVVDTLEDAVADCGLVVGTSARG 59 Query: 95 RNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151 R ++ P+ V ER++ + V ++FGRE GLTNEE+ + N ++ P + Sbjct: 60 RRIPWPLVNPR----VCAERVYPELTEHPVALVFGREDRGLTNEELQVCNLHVNIPASED 115 Query: 152 FPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATKGELLSFL-DYLEISLEERGY 208 + SLN+ AV ++ +E + S +++E +T K E + L +LE +L E + Sbjct: 116 YTSLNLGMAVQVVTYELRMAHLSGALSTDDMQEWDTKLAKSEDIERLFVHLEETLIEMQF 175 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +P K+++ L +F R + EV ++RGI+S+ ++ R++ Sbjct: 176 LKP-SAPKQLMTRLRRLFNRTRMDDLEVQMMRGILSSSQQWVRKA 219 >gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739] gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739] Length = 246 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 117/205 (57%), Gaps = 15/205 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G +AR M NF +T L LVNP+ ++ AR+ + +A ++++ ++ + Sbjct: 5 VILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKIHES 64 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+EA+ + T+ ++ ++ ++P+E A L+ I+ G+ +G++FGRE GL Sbjct: 65 LEEALNTVDLAIGTSGLAGGDYIPERAPISPEEFAKRLS--IYDGE-IGLVFGRESRGLD 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL- 192 NEE+ + ++ P + +P +N+S AV ++++E + + ++ VK + +T+ E Sbjct: 122 NEELKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLKNNPTEVKRRLRKSTRQERE 181 Query: 193 ------LSFLDYLEI--SLEERGYF 209 FLD LE LE+R ++ Sbjct: 182 MLVEFWAKFLDTLEYPKDLEKRRFY 206 >gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 242 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 20/243 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 I+LV NIG ARAM LT + LV P DG +A + +A A + + R+ Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANRARI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S L EAI+D + ++AR+R +L P+EA + E S + +FGRER GLT Sbjct: 63 VSTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPS-HPIAFVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189 NEE+ + + P NP + SLN++ AV + +E +++ E KE P Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEAEYP-LN 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLD 247 EL F ++LE + + + + M + + +F RPE+ E+ LRGI++ ++ Sbjct: 179 NELELFYEHLEKVMMDTDFINKAHPGQVM-NKMRRMFNRARPEI--HELRTLRGILTAVE 235 Query: 248 KFS 250 + S Sbjct: 236 RSS 238 >gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822] gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis] Length = 258 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 14/242 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+ P N+G ARA+ +L LV PR D +A + ++ A V++ V Sbjct: 11 IMTQPSHPGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGALDVLERAAVHD 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A TAR R+ +EAA + + + V I+ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184 N +I L + I P NP + SLN++QA+ L WE + SS + Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPGA 190 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+ + Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249 Query: 245 TL 246 + Sbjct: 250 AM 251 >gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 241 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 9/239 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P+ E+ + ++ A + + ++ S+ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCSV-DEQTMALASGAGEIAQNAKIVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++D + ++AR+R +L P+E E S V ++FGRER GLTNEE Sbjct: 66 LDEAVSDCQLVVGSSARSRTLEWPMLEPRECGRKFVEEGESSP-VALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194 + + + P NP + SLN++ AV + +E + + P + E Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKERAAFPKAEIPEYSRHEEFEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKM--LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L ++E ++ G+ + K M L L+S RPE+ +E+ +LRG++++++K ++ Sbjct: 185 LLQHIEKVIKLTGFINDGQPNKVMTKLRRLFS-RARPEV--QEINMLRGVLTSVEKMNK 240 >gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 242 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P++ EN+G ARA+ +L LVN D +A + +D ++D+ R+F Sbjct: 4 AFVLVEPKVPENVGAAARALCTMGFGELWLVN-SDLHTRPEAHWLAHGSDHILDNARIFP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + T+A+ R+ + P + VL + S ++FGRE GL+NE Sbjct: 63 DLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDRGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + P+ +PSLN++Q+V+L WE S +S +++ + PA L + Sbjct: 123 ELALCDLLTGIPMKVTYPSLNLAQSVMLYAWEM---SGLSDAMDIRHE--PADDNRLGAL 177 Query: 196 LDYLEISLEE 205 LE L E Sbjct: 178 RGRLETLLPE 187 >gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546] gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546] Length = 241 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + S + + Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQAIALAAGAADIAQSATIVNT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+AD + ++AR+R +L P+E + + GQN V ++FGRER GLTN Sbjct: 66 LSEAVADCALVVGSSARSRTLEWPMLEPRECG---EKFVAEGQNSPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGE 191 +E+ + + P NP + SLN++ AV + +E + + +E P K E Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLQHEQSQYAKPEEAEYPRHK-E 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE + + F E+ K+++ L +F R +E+ +LRG+++ ++K Sbjct: 182 LELFFTHLE-KVAKDTQFISEEQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237 >gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] Length = 244 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 N+E+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPETQEINILRGILTSVQK 238 >gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1] gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 243 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 7/153 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ + N+G VAR NF ++ LV+PR E+A+ +A A +D+ RV SN Sbjct: 6 IVLVETEGAVNLGFVARLAENFEADEIYLVSPRASL--EEAKRYAARAAWRLDAARVVSN 63 Query: 77 LKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA+ + T++ +R+ ++ LAP EAA VL + V I+FGRE GLT Sbjct: 64 LEEALRGVSASLCTSSHMSDRDALRAPLAPWEAAEVLAA---TPGTVAIVFGRESVGLTR 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 EIAL + S P +P +PSLN+S A + ++E Sbjct: 121 GEIALCSLYSSIPASPRYPSLNLSNAAAIYLYE 153 >gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4] Length = 244 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 N+E+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] Length = 241 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 16/239 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 I+LV NIG ARAM LT + LV P DG +A + +A A + ++ RV Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANNARV 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EAI+D + ++AR+R +L P+EA I E + + +FGRER GLT Sbjct: 63 VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189 NEE+ + + P NP + SLN++ AV + +E +++ E KE + P Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEADYPLNH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + + + M + + +F R +E+ +LRG+++ +++ Sbjct: 180 -ELELFYEHLEKVMTNTDFINKAHPGQVM-NKMRRMFNRTRPETQELRILRGVLTAVER 236 >gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] Length = 263 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73 P + +VD Q N+G ++RAM NF + L L++P + P +A + +A D V+ + Sbjct: 24 PAVAVVDAQFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHARDDVLPNATE 83 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 S E ++D H I T N N+ + P L ER+ + + ++FGRER GL Sbjct: 84 IS-FDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTALVFGRERVGL 142 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGE 191 TNEE+A + I + P + +P LN+ QA + ++E ++ E + + + A + Sbjct: 143 TNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRSLALDKDETQLPDLERVRADEAT 202 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + D LEE + P EK++K + L ++ R +L E G++ Sbjct: 203 VDRLYDQWADLLEEINH--PPEKREKTMRMLRRVYGRADLTEREANTFLGLL 252 >gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] Length = 248 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 19/249 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 IIL+ NIG ARAM L+ L LV P DG K+ + SA A V+ + + Sbjct: 7 IILIGTSHPGNIGSAARAMKTMGLSNLVLVAPECEVDG----KSIALSAGASDVLKNHQR 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWG 131 F+ L+EAIAD + +AR R +L P+E + + G V I+FGRE G Sbjct: 63 FATLEEAIADCGLVIGASARPRTLDWPMLDPREMG---EKAVIEGAKYPVAIVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTN+E+ + + P NP + SLN++ AV + +E + + S K E+ P ++ E Sbjct: 120 LTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIRMSFLASHAKVELEEEYPLSE-E 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDKF 249 L ++L+ +LE+ + P M L F RPE++ E+ + RG+ S++ K Sbjct: 179 LEGMFNHLQETLEDTRFIVPAHPGLVM-TKLRRFFNRARPEVV--ELRMWRGVFSSIQK- 234 Query: 250 SRQSSRRNN 258 S S+R+ + Sbjct: 235 SLISARKED 243 >gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] Length = 238 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 14/242 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP----RDGWPSEKARSSSANADCVIDSVR 72 +++VD + N+G +ARAM NF + L+LV+P RDG + A D + D+ Sbjct: 4 VVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDG--EAYGFAGQAREDVLPDAEV 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWG 131 V E I H + T N + K V P L + S + +V ++FGRER G Sbjct: 62 V--TFDEVIEGFHTVGFTATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190 L NEE+A + I + P + +P LN+ QA + ++E + ++ S+ +V+ + A + Sbjct: 120 LMNEELARLDQICAIPASADYPVLNLGQAATVALYELRDLAMNESQLPDVEHER--AAEP 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F D + +L+ GY P K+ K + + + R E+ L G++ +++ + Sbjct: 178 EIERFYDRFDETLQAVGY--PDRKRPKTMRLVRRLVGRSHPTDREITTLHGVLRAVERAT 235 Query: 251 RQ 252 R+ Sbjct: 236 RE 237 >gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 238 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 5/231 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NF + LRLVNPR + A + +A ++ + Sbjct: 4 VVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIHP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L+ AI D + AT R + + P A +N + ++FGRE GLTN+ Sbjct: 64 DLEAAIGDCSRVIATCGRLDHGGIPLQTPDTA---INWLLAGDPPHALVFGREDRGLTND 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L +++ +PSLN+S AV +++ + + + + K+ +PA +L Sbjct: 121 ELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARHQLQARAPQAKDP-SPAPAADLTGL 179 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 LD L E G+ P + +M + + R EEV L RG+V L Sbjct: 180 LDDAAELLLEAGFLLPHTRAARM-GKVRDLLQRATCRAEEVALFRGMVRQL 229 >gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 244 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 17/240 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S N V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 NEE+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI--RPELMREEVFLLRGIVSTLDK 248 EL F +LE + + F ++ ++++ L +F RPE +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTE-FISAQQPGQVMNKLRRMFTHARPEA--QEINILRGILTSVQK 238 >gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01] gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116] gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01] gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 9/236 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ ++ + +A A + + V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDDQTLALAAGAGDIAQNATVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L+EAI D + ++AR+R +L P+E + GQ V ++FGRER GLTN Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192 +E+ + + P NP + SLN++ AV + +E ++ S+ E EL Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPSEPEEYPRHKEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + E+ ++++ L ++ R +E+ +LRG+++ ++K Sbjct: 183 EMFFEHLEKVMIDTQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237 >gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 155 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 1/150 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ +V + Sbjct: 7 VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE GLTNEE Sbjct: 66 LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + P +P F SLN++ AV ++ + Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155 >gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42] Length = 264 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 28/255 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ R Sbjct: 5 FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62 Query: 73 VFSNLKEAIADLHFIYATTARNR-----------------NNFKSVLAPKEAAIVLNERI 115 + + L EA+ + + AT R NN S L K L Sbjct: 63 IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARNP 122 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 123 SPETGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182 Query: 176 SEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 E +++ P A ++ L + E +L G+ P KK++ L +F R +L Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241 Query: 232 MREEVFLLRGIVSTL 246 +EE+ +LRG+ ++ Sbjct: 242 TQEEIHILRGVAKSM 256 >gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] Length = 231 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 7/161 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ILV+P+ N+G +AR M NF + +LR+V +D E A + +A ++++ + + Sbjct: 4 IVILVNPKYSGNVGAIARNMMNFGVNELRIVGSKDILNDE-AYIRAVHAKEILNNAKFYD 62 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL +A D+ FI T+ +RN + + P E A +I G +GI+FGRE GL Sbjct: 63 NLNDATQDIDFIVGTSGAVSGDRNLKRVPITPHELA--EKYKIVDGT-MGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +N+E+ L + +S P + +P +N+S AV ++++E +S+ Sbjct: 120 SNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELYVSSL 160 >gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I] gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I] gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS] Length = 258 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 14/242 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I+ P N+G ARA+ +L LV PR D +A + ++ A V++ V Sbjct: 11 IMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHD 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A T R R+ +EAA + + + V I+ G ER GLT Sbjct: 71 TLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184 N +I L + I P NP + SLN++QA+ L WE + SS + Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPGA 190 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA + + L + E +L G+ P KK++ + + R L R+EV +LRG+ + Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249 Query: 245 TL 246 + Sbjct: 250 AM 251 >gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 244 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P+E E++ S +V ++FGRER GLT Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPREC----GEKLISEAKQHSVAMVFGRERTGLT 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190 N+E+ L + + P NP + SLN++ AV L+ +E + SS+ + ++ P + Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 306 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 36 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 95 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ +FG ER GL+NE Sbjct: 96 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLSNE 154 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E A E+ Sbjct: 155 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDEI 214 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +LE +L + P KK++ L +F R L REEV ++RGI + Sbjct: 215 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267 >gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114] gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114] Length = 241 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 16/239 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73 I+LV NIG ARAM LT + LV P DG +A + +A A + ++ RV Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANNARV 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EAI+D + ++AR+R +L P+EA I E + + +FGRER GLT Sbjct: 63 VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189 NEE+ + + P NP + SLN++ AV + +E +++ E KE + P Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEVDYPLNH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + + + M + + +F R +E+ +LRG+++ +++ Sbjct: 180 -ELELFYEHLEKVMTNTDFINKAHPGQVM-NKMRRMFNRTRPETQELRILRGVLTAVER 236 >gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis TXDOH] Length = 306 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 11/236 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR P +A + ++ AD V+ S V Sbjct: 36 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 93 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+ + + A TAR+R LAP+ AA +++ +G ++ +FG ER GL+ Sbjct: 94 VPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLS 152 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKG 190 NE + +AI P NP + SLN++QAV ++ +E + E A Sbjct: 153 NEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSD 212 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV ++RGI + Sbjct: 213 EIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267 >gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] Length = 393 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/92 (46%), Positives = 65/92 (70%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IILV+P++GENIG ARAM NF L+ LRLV P DGWP+ A + +++A ++ S R++ Sbjct: 7 PSIILVEPKMGENIGAAARAMKNFGLSDLRLVKPHDGWPNTLADAVASHAVDLLRSARLY 66 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 ++++AIADL +YA TAR R K+ + ++ Sbjct: 67 DSVEDAIADLDRVYAATARTRYMTKAFVTSRQ 98 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 G++FGRE GLTNEE+A +N ++ +P +P LN++QAVL V+E + + Sbjct: 228 AGVLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNARLDAVAGAS 287 Query: 181 KEQNTP--------------------------ATKGELLSFLDYLEISLEERGYFRPVEK 214 + A+ GE+ +FL L L++ +F K Sbjct: 288 SVEAAAAAGGGGAVAVGSNAEELRARAAAVQLASHGEVENFLRRLVSELDDVNFFESASK 347 Query: 215 KKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDKFSRQSSR 255 + + + ++ + E L EV LL GI+S L +R +R Sbjct: 348 RPATMLSIRNLVAKAEGLTASEVALLHGILSKLTTAARARAR 389 >gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] Length = 240 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 19/238 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75 ++LV + NIG ARAM NF LR+V P D W ++ARS+ A ++ S R S Sbjct: 12 VVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAW--QEARSAVGAAS-ILASARECS 68 Query: 76 NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+AD + T+A +R + ++ A L +R+ + ++FG+E+ GLTN Sbjct: 69 TLADAVADCTCVLGTSAIGDRQPLQPIVDLPAALPWLAQRV--AGRIALVFGQEKHGLTN 126 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +++ +AI+ P P S+N+ QAV + ++E + T A K + Sbjct: 127 HDLSHCDAILRIPTLPEQASMNLGQAVAVCLYE-------FARSGHAPTATEAPKAAPAA 179 Query: 195 FLDYLEISLEE----RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+ L SL GY +P+ + +L+ ++ R L RE+ LL G+++ +++ Sbjct: 180 DLERLTASLHRLLCISGYIKPIAAQGALLEA-RALIHRLTLNREDTHLLTGMLAKIER 236 >gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis E264] Length = 338 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 68 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 127 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ + + A TAR+R LAP+ AA +++ +G ++ +FG ER GL+NE Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLSNE 186 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192 + +AI P NP + SLN++QAV ++ +E + E A E+ Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDEI 246 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +LE +L + P KK++ L +F R L REEV ++RGI + Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 299 >gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis MSMB43] Length = 299 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73 +L++P N+G ARA+ ++L LV PR P +A + ++ AD V+ S V Sbjct: 33 VLIEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 90 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+ + + TAR+R LAP+ AA +++ +G ++ ++FG ER GL+ Sbjct: 91 VPTLADALNGVQWSLGLTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLS 149 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKG 190 NE + +AI P NP + SLN++QAV ++ +E + E T A Sbjct: 150 NEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAAPPDAALGTLAQSD 209 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E+ +LE +L + P KK++ L +F R + REEV ++RGI Sbjct: 210 EIERMFVHLENALIALDFLDP-RNPKKLMSRLRRLFARTGIEREEVNIVRGIA 261 >gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] Length = 243 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L Q+ LV+P+ ++ ++ +D +++ ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLKQMVLVDPQCEVDAQAIALAAGASDIALNA-QIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132 L AIAD + T+AR+R +L P+E F+ + V I+FGRER GL Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECG-----EKFAAEGEQHPVAIVFGRERTGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATK 189 TN+E+ + +S P NP + SLN++ AV + +E N S + E P Sbjct: 121 TNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFSTMPEAAYP-RH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++K Sbjct: 180 NELELFYTHLEKVLVQTQFISE-EKPGQVMNKLRRLFSRARPEEQELNILRGVLTAVEK 237 >gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 276 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 22/250 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P N+G +AR M N Q LV+P+ D E ++ AD ++ R Sbjct: 17 LVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTAVHGAD-LLHQARKVQ 75 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI----IFGRERWG 131 L EA+ ++ TT R++ P E I + F +FG E G Sbjct: 76 TLPEALQGCVQVFGTTGRSQTY------PPEWQIQSPRQAFPALLAAGPAALVFGPEDRG 129 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPA 187 L+NEE+AL + I P + +PSLN++QAV + +E ++ + ++ P Sbjct: 130 LSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELYTLVCQSPSPAPPMPSPQRLAPF 189 Query: 188 TKGELL-SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ELL F D+LE L + GY P ++KML ++F R L EV LLRGI+ L Sbjct: 190 ---ELLEGFFDHLEALLLQIGYLHPHTARRKML-KFRALFQRAGLTVAEVALLRGILRQL 245 Query: 247 DKFSRQSSRR 256 ++S+ SR+ Sbjct: 246 -QWSQGCSRQ 254 >gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 240 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 3/231 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L+ P+ EN+G ARA+ N L+ V P + E AR + +A V+D+ R L Sbjct: 8 VLMRPRNAENLGAAARALKNCGLSDWVWVRP-EVEDLEPARRLAVHAGDVLDAARRADTL 66 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +EA+AD ++ T++R K L P+ L R G V ++FG ER GLTN E+ Sbjct: 67 EEAVADCVWVVGTSSRKVEG-KRRLPPRAVGEELVARAPQGP-VALVFGDERSGLTNAEV 124 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + + P P PS+N++QAVLL +E + ++ AT EL Sbjct: 125 ERVHDLSAVPTAPEQPSINLAQAVLLYAYEVRVAMLEAAATPPGPLPAAATDAELAQVES 184 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LE L G+ + + + DL++ R L R+E L + +L K Sbjct: 185 TLESVLTTGGFLVDAQPGRTAVRDLFAPLRRSRLTRKEARLWLAALHSLRK 235 >gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] Length = 304 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 47/287 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P N+G VAR M NF L+QL LV+P+ + +A + +AD V+ + ++ Sbjct: 20 IVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGAEALQMAVHADDVLKTAQIVPT 79 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAA---IVLNERIFSGQNVGIIFGRERWGLT 133 + +A+A + ATTAR R F L P E A ++ + + ++FG E GL+ Sbjct: 80 IPKALAGCEYAIATTARTR-GFNVPLDPPETALPNLLTSNPQQPIRQTALLFGPEDRGLS 138 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENSIVSS--------EK 178 N+E+ + + P + + +LN++QAV + +E NS +SS K Sbjct: 139 NQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSRVARTFCPNSTLSSYPIESSLENK 198 Query: 179 NVKEQNTPATKG---------------------------ELLSFLDYLEISLEERGYFRP 211 QNTP++ E+ + ++LE L + GY P Sbjct: 199 TPALQNTPSSAKQSESSLSSTANAPIIKEHEDQPRANLEEIERYYEHLESLLLQVGYLLP 258 Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 +M + + R EV LLRG++ ++ S +R Sbjct: 259 HTSASRM-RKIRQLLHRASPTSHEVALLRGMIRQIEWALSHSKQRQT 304 >gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120] gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120] Length = 243 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 6/235 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I+LV+P N+G +AR M NF L L LV+P+ SE A + +A +++S Sbjct: 5 GVRIVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESAIT 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L A+ AT+ R+ + ++ P+ A L E +GQ +IFGRE GL+ Sbjct: 65 VPTLPAALHGCVRAIATSGRDNDWGLTLETPRIALPWLLEE--TGQPSALIFGREDRGLS 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGEL 192 NEE+ + I P +P + SLN++ AV + +E +N + + E P E Sbjct: 123 NEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNLTPPETQTISETEFAPLEFVE- 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ LE L GY P +M + ++ R L EV +LRGI+ ++ Sbjct: 182 -AYYQQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIE 234 >gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] Length = 232 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 16/235 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M NF L +L LVNP +AR+ S++A ++++ +V + Sbjct: 7 IVLVEPLYQGNVGSIARVMKNFGLCELVLVNP--CKLKGEARAMSSHARDILENAKVTNT 64 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133 KEA+ D + TT + + + + P L R+ G+ V I+FGRE G T Sbjct: 65 FKEAVKDASLVVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGK-VAILFGREDNGFT 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ L + I+ P N +P +NIS + ++ +E ++I S EK A +L Sbjct: 124 NDELRLCDMIVHIPANEEYPIMNISHSAAVIFYEL--SNIQSGEKPF------ADPFDLK 175 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++L L++ Y P KK K L +F R +L EV LRG++ + + Sbjct: 176 LLHNHLNELLKQLEY--PSHKKDKTLLMFRRVFGRAQLTNREVQTLRGVLRIIQR 228 >gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] Length = 227 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 9/155 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N+G +AR M NF +LR+V + +E A + +A ++D+ + +++ Sbjct: 4 VVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFYNS 62 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 EAI DL F+ AT+ +RN + + PKE A ++I + +GI+FGRE GL Sbjct: 63 FDEAIKDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGKIGIVFGREDDGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NE+I + ++S P + +P +N+S AV ++++E Sbjct: 119 RNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 153 >gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679] gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] Length = 271 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P L + IIL NIG ARAM L +L +V Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 47 --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP D P E +S AD V+ + + + L EA+AD A T+R R Sbjct: 61 VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] Length = 255 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 10/246 (4%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A + + P + +VD Q N+G +ARAM NF L LV+P + P +A + Sbjct: 5 PSATEPPSDRTPPAVAVVDAQFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAYGFAG 64 Query: 63 NA--DCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +A D + ++ + F L + + H I T N ++ V P L ER+ + + Sbjct: 65 HAREDVLPNATEISFDRL---VTEYHTIGCTAVTNEDDRSHVRFPFSTPADLAERLPTVE 121 Query: 120 N-VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++FGRER GLTNEE+A + I S P + +P LN+ QA + ++E ++ E Sbjct: 122 APTALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELRSLTLADDET 181 Query: 179 NVKE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + + + A + + D L E + P EK+ K + L +F R +L E Sbjct: 182 QLPDVERVRAPEPTVDRLYDQWADLLAEINH--PEEKRDKTMRMLRRVFGRADLTEREAN 239 Query: 238 LLRGIV 243 L GI+ Sbjct: 240 TLLGIL 245 >gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] Length = 271 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P+L + IIL NIG ARAM L +L +V Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTEQPP 60 Query: 47 -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP+D P E +S AD + ++V + + L EA+AD A T+R R Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAV-IAATLDEALADTTLACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRELVPELLQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] Length = 271 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P+L + IIL NIG ARAM L +L +V Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTGQPP 60 Query: 47 -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP+D P E +S AD + ++V + + L EA+AD A T+R R Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAV-IAATLDEALADTTLACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRELVPELLQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] Length = 274 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 12/233 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 I+L P+ EN+G ARA N +++L LV P + ++AR +++ +++ + + Sbjct: 31 IVLFRPKFSENVGAAARACANMGVSRLLLVEP-SAFDLDRARPMATSKGGLLLEKLEFYP 89 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+A ++ TTAR ++ P++AA + +G V ++FG E GL+N Sbjct: 90 TLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAAGGKVAVVFGPEDAGLSNH 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-----TKG 190 E L +++ P + SLN++QAVL+M +E + ++ +V E P T Sbjct: 150 ETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFK----AATGHVGEPAGPTPARTVTHA 205 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E + L +L + +P ML + R L R+E LL G+ Sbjct: 206 EREALFAALRRTLLSIDFIKPDNPDYWML-PVRRFIDRVGLKRQEYSLLMGVC 257 >gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02] gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18] gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140] gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19] gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18] gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1] gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1] gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332] gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2] gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 271 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P L + IIL NIG ARAM L +L +V Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 47 --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP D P E +S AD V+ + + + L EA+AD A T+R R Sbjct: 61 VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] Length = 266 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 120/241 (49%), Gaps = 21/241 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPR-------------------DGWPSEKARSSSANADCV 67 NIG ARAM LT+L LV P D E++ S+ A V Sbjct: 23 NIGAAARAMKTMGLTRLTLVAPNIMATPMTPEPPAFIAEQAADFRLPEESFVLSSGARDV 82 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ ++ + L EA+A A T+R R + P++ A L GQ + ++FG Sbjct: 83 LERAKIVATLPEALAGTTLSCALTSRRRELTTPLQTPRQLAPSLLAAAQVGQQIALVFGN 142 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E +GL+ +E+ N +++ NP + SLN++QAV ++ +E + + + E+N A Sbjct: 143 ETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCYELFSHVNMDMSHLIPERNL-A 201 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T ++ + +LE ++ + +FR +++M+ L+S+F R + E++ +LRG ++ + Sbjct: 202 TAEQVAGMVQHLEDTMVQLDFFR-RRNQERMMRRLHSLFNRADTTTEDIDILRGFLNRVQ 260 Query: 248 K 248 + Sbjct: 261 Q 261 >gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L+ P+ EN+G ARAM N L++ V P D P AR + +A+ ++D VR Sbjct: 8 VLMRPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP---ARRLAVHAEELLDGVRRED 64 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L+ A+AD ++ T++R + +L P+ L R G V I+FG ER GLTN Sbjct: 65 SLEAAVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQGP-VAIVFGDERSGLTNA 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + + P +P PS+N++QAVLL +E S+ ++ A+ EL Sbjct: 123 EVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARV 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LE L+ G+ + L D+++ R L E L + TL K Sbjct: 183 EETLETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 235 >gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 19/241 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM Q+ LV+P+ ++ ++ +D +++ ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGFKQMVLVDPQCEVDAQAIALAAGASDIALNA-QIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L AIAD + T+AR+R +L P+E + G+ V I+FGRER GLTN Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECG---EKFAVEGEQHPVAIVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT------ 188 +E+ + +S P NP + SLN++ AV + +E I + N ++ P Sbjct: 123 DELQKCHYHVSIPANPEYSSLNLAMAVQTLCYE-----IRVAHLNRQQSQFPTMSEAAYP 177 Query: 189 -KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++ Sbjct: 178 RHNELELFYTHLEKVLVQTQFISE-EKPGQVMNKLRRLFSRARPEEQELNILRGVLTAIE 236 Query: 248 K 248 K Sbjct: 237 K 237 >gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 3/221 (1%) Query: 28 IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87 +G VAR NF + LRLV PR +A + + V+ F+ L EA++D + Sbjct: 1 MGSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQRV 60 Query: 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147 A+ R + + + + E + SG V ++FGRE GL+NEE+ LS+ ++ Sbjct: 61 VASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRVVRLH 120 Query: 148 VNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205 +PSLN+S AV +++ + + I + ++ + + A +L + L E L + Sbjct: 121 TVDHYPSLNLSHAVAIVLHDLQRSRIGAAADDQQALQASEAAAPPQLEACLRDAEALLLD 180 Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 G+ P K +M + + R + +E+ +LRG+V L Sbjct: 181 VGFLLPHTAKARMA-KIKGLLRRASIQAQELAMLRGMVRQL 220 >gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1] gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1] Length = 259 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 126/253 (49%), Gaps = 20/253 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VARAM NF + L L+NP + +AR+ S++A V++ R+ S Sbjct: 14 VVLVEPMYQGNVGSVARAMKNFGYSDLVLMNPCE--LEGQARAMSSHARDVLEGARIVST 71 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133 L+EA+ + TT + + + P + E++ SG + ++FGRE G + Sbjct: 72 LEEAVKGADLLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSG-TIALLFGREDNGFS 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + +++ P + ++P +N+S AV ++++E ++ + P G L Sbjct: 131 NDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL---------SGLEGGSNPLADGFDL 181 Query: 194 SFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L +L+ LEE Y P KK K L I R L EV LRGI+ ++ R Sbjct: 182 QLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKSERKMRL 239 Query: 253 SSRRNNVLLQKTE 265 +S LQK E Sbjct: 240 ASGVET--LQKIE 250 >gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11] gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae SK-93-1035] gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 271 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P L + IIL NIG ARAM L +L +V Sbjct: 1 MTALKPALPDYLGNIRIILTRTGHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 47 --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP D P E +S AD V+ + + + L EA+AD A T+R R Sbjct: 61 VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7] gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 227 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 19/184 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+P+ N+G ++R NF + +L +VNP E+A+ SA ++ ++ +N Sbjct: 4 LVIVEPEGSYNLGFISRLAKNFLVDELYIVNPH--CDLEEAKKFSAKGLEYLEKAKIVNN 61 Query: 77 LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EAI D+ AT++ + + + P E RI G+ V +IFGRE GLT Sbjct: 62 FDEAIKDVELKIATSSIADIKGDILRKSIRPWELP-----RIIEGKKVALIFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 EEIA S+ ++ P NP +P LN+S AV ++++E ++ + +N P GE + Sbjct: 117 REEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKS---------RGENKPVISGEAI 167 Query: 194 SFLD 197 S +D Sbjct: 168 SLID 171 >gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 217 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYFR 210 L F +LE +L G+ R Sbjct: 183 LERFYGHLEQTLLSTGFIR 201 >gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+ L NIG ARAM L++L +V P+ + ++ +D ++ S + Sbjct: 29 VVMVNTTLPANIGSAARAMHTMGLSRLTVVEPKLPIDATSVSHAAGGSD-LLSSAIIAPT 87 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----------NER--IFSGQNVGII 124 L+ AIAD ++A ++R+R+ + V+ P +AA ++ NER + + N+ I+ Sbjct: 88 LEAAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSAINERNDVNTAPNIAIL 147 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 FGRE GLTNEE+A ++ I NP +P LN++ AV Sbjct: 148 FGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAV 184 >gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 250 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 10/237 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSVRVF 74 +LV+ N+G ARA+ + LRL++P+ G E +S AD + SV Sbjct: 12 VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S L + + T+R+R + + A ++ + V ++FG ER GL N Sbjct: 72 S-LASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----VSSEKNVKEQNTPATK 189 E +AL + NP +PSLN++QA+++ + E+ I +S N +E A Sbjct: 131 EHLALCTHRVWLDANPNYPSLNLAQALMICAYTLRESLIRDPGASNSLANREEMADFADP 190 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + L++ LE GY P KK++ + ++F R L +EE+ LLRGI + Sbjct: 191 AAVAAMLEHWREGLEAIGYLDPA-NPKKLMPRIQALFARSHLHKEEIDLLRGIAKQM 246 >gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 252 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 9/203 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ N+G ARAM N + LR+V PR + +A + + +A ++ S RVF Sbjct: 4 AVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARVFP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+ D T+AR R + AP+ A++ + ++FG E GL N Sbjct: 64 TLREALGDRDLSVGTSARLRADLP---APRHPALI-RPMVRQAAAPALVFGPEETGLINS 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ + P + SLN+SQAVLL+ +E ++ ++ + AT+ E+ + Sbjct: 120 DLEQCQVTVRIPTGN-YASLNLSQAVLLVCYEFLQG----QDEPIPVTRKTATREEMEAM 174 Query: 196 LDYLEISLEERGYFRPVEKKKKM 218 +L +++ GY V + + Sbjct: 175 YSHLHETMQLIGYTDAVRARHTL 197 >gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] Length = 249 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 16/236 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK-ARSSSANADCVIDSVR 72 P + +V+P+ NIG +ARAM NF + L+LVNP + G SE + A D + + Sbjct: 3 PAVAIVEPKTPGNIGTIARAMKNFGMDDLKLVNPPEFGRDSEAYGFAGQAREDVLPNYDE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----IIFGRE 128 V E I + H + T N + V P + L E + Q+V +IFGRE Sbjct: 63 V--TFDELIENYHTVGMTATTNEDASHHVRFPFKTPRELAESL---QDVTTDTVLIFGRE 117 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA 187 GLTNEE++ + + S P + +P+LN+ QA + ++E ++ ++ +V + A Sbjct: 118 ANGLTNEELSRIDEVCSIPASASYPALNLGQAATVTLYELRTLTVEETQLPDVSRER--A 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + E+ F LE G +P EK +K + + +F R E+ LRGIV Sbjct: 176 DEAEIEGFYGAFSDLLETVG--QPTEKHEKNMRMIRRVFGRAHPTGREIATLRGIV 229 >gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 257 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L PQ N+ + R M NF L+ LRLV P P A + + + +I R F Sbjct: 12 ALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRIA-GIAHHTEPLIARTRRFP 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+ A+AD TT R R + VL P+ AA ++ ++ + Q V I+FG ER GL N Sbjct: 71 TLEAALADCGLTLGTTGRPRETERQVLPPRAAAPMILDQART-QRVAILFGPERDGLPNA 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + L + +I+ P +P SLN++QA L++ +E Sbjct: 130 ALDLCHGVITIPTHPFNRSLNLAQAALVIAYE 161 >gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7425] Length = 262 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 17/237 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG ++R + N L QL LVNP +AR + +A ++ R Sbjct: 17 IVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQQARQVQT 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ I ATT R + P+ L G +IFGRE GLTN E Sbjct: 77 LPQALEGCERIMATTMREQVGEVVTELPRTGLPWL-----LGHPAALIFGREDRGLTNTE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195 + + +I P +P++PSLN++QAV + +E + + + + E P GEL F Sbjct: 132 LNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQ----ASQALVEPIAPG-GGELARFE 186 Query: 196 -----LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 LE L + GY +M +F R + EV LLRGI+S ++ Sbjct: 187 NLEAYYQQLETVLLKIGYLYSHTAVSRM-AKFRRLFNRSQPTEAEVALLRGILSQVE 242 >gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus UQM 2246] Length = 269 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P N+G AR M NF L+ L LV P AR + + V+D+ RV + Sbjct: 10 VVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAVLDAARVVPD 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L +A++D F AT++ F+S AA + E + + + V ++FG E GL+N Sbjct: 70 LGDALSDCVFSLATSSLTAGVFRSGTI-GTAAEQMPELLAAAEAGPVAVVFGPEPHGLSN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKE--QNTPATKG 190 EEI + +++ P +P SLN++QAV + +E + + ++ + E + A Sbjct: 129 EEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSKRLNDARGKPEIPERAVAPFA 188 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + ++L +L E GY EK ++ + + R +EV +L G+ L S Sbjct: 189 DQDRMFEHLRHALTEVGYLFG-EKGDSLMHAIRQLVGRAMPTPQEVKILHGLARQLLWAS 247 Query: 251 RQSSRRNNV 259 RQ R + Sbjct: 248 RQMKRDGDT 256 >gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus EPS] gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus EPS] Length = 247 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 14/236 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR W + E+ ++ A V+ + R+ Sbjct: 6 ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ + + AT R+ P+E L + Q+V +FG ER+G+ Sbjct: 64 VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKE-GDAQHVAFLFGSERFGMR 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NE++ N +S P +P F SLN+ A+ ++ +E + V++ P + Sbjct: 123 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEW---RLALGGYEVRDATAPVQAADAQ 179 Query: 194 S---FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 S LD+ E SL + G+ P KK++ L +F R + EE+ +LRGI + Sbjct: 180 SVAGMLDHWERSLVDIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAM 234 >gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666] Length = 268 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 121/250 (48%), Gaps = 16/250 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 +L++ N+G ARAM L LV PR W + E+ ++ A V+ + R Sbjct: 5 FVLINTSHAGNVGAAARAMKVMGFDDLVLVAPR--WANVLNREETIQRASGALDVLKNAR 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGI------- 123 + + L EA+ + + AT R+ AP+E + ++ N+ S +N G+ Sbjct: 63 IVATLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAF 122 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FG ER+G+ N+++ + +S P +P F SLN+ AV L+ ++ + + + + Sbjct: 123 LFGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWRQALGGFAVQPATPE 182 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A E+ L + E +L + G+ P KK++ L +F R +L EE+ +LRG+ Sbjct: 183 PKLADAAEVAGMLGHWEEALTDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIHILRGVA 241 Query: 244 STLDKFSRQS 253 + + + ++ Sbjct: 242 KAMSRTANKA 251 >gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] Length = 243 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 15/241 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR W + E+ ++ A V+ + R+ Sbjct: 6 ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ + + AT R+ P+E L ++ Q+V +FG ER+G+ Sbjct: 64 VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQ--GEQHVAFLFGSERFGMR 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---ATKG 190 NE++ N +S P +P F SLN+ A+ ++ +E + V++ P A Sbjct: 122 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEW---RLALGGYEVRDATAPIEAADAK 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + L++ E SL E G+ P KK++ L +F R + EE+ +LRGI + + Sbjct: 179 AVAGMLEHWERSLVEIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMADAA 237 Query: 251 R 251 R Sbjct: 238 R 238 >gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] Length = 241 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 13/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L LV+P+ E+ + +A A + ++ V Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQTLALAAGAADIAENATVVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+AD + ++AR+R +L P+E + + GQ V ++FGRER GLTN Sbjct: 66 LTEAVADCALVVGSSARSRTLEWPMLEPRECG---QKFVSEGQESPVALVFGRERTGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKG 190 +E+ + + P NP + SLN++ AV + +E ++N S+ EQ Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLDNE--QSQYQAPEQVEYPRHK 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE + + F ++ K+++ L +F R +E+ +LRG+++ ++K Sbjct: 181 ELEMFFAHLE-KVAKDTQFISEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAVEK 237 >gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] Length = 237 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 11/230 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFS 75 + +VD Q N+G +ARAM NF L+ L+LV+P + P +A + A D ++ S V + Sbjct: 5 VAVVDAQTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSADVVT 64 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134 +E + + H + T N + K V P L E + +V ++FGRE GL+N Sbjct: 65 -FEEIVNNYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGREDVGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGEL 192 EE+A + I S P + +P LN+ QA ++++E ++ ++ + + PA +G Sbjct: 124 EELAEVDQICSIPASDDYPVLNLGQAATIVLYELRALTVEETQLPEITDRADQPAIEGLH 183 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 F +LE+ P EK+ K + R EV LRG+ Sbjct: 184 DQFGSFLEV------IDHPEEKRAKAGRLFRRVIGRAHPTGREVRTLRGL 227 >gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 293 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 +++V+ L NIG ARAM L++L +V+P+ P + + S +A ++ S + Sbjct: 25 VVMVNTTLPANIGSAARAMHTMGLSRLTVVDPK--LPIDDTSVSHAAGGSDLLSSAIIAP 82 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-----NERIFSGQ-------NVGI 123 L+ AIAD ++A ++R+R+ + V+ P +AA ++ + +GQ N+ I Sbjct: 83 TLESAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSTVNGQDGINTAPNIAI 142 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 +FGRE GLTNEE+A ++ + NP +P LN++ AV Sbjct: 143 LFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAV 180 >gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV P N+G ARAM +RLV R E+A + A V+ F L Sbjct: 6 VLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEVLTQAEAFDTL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +EA+AD+ + ATTAR R ++ L P E + + S V I+FG E GL+NE++ Sbjct: 65 EEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKP-SLDKVAIVFGCEESGLSNEQL 123 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 A + I P+ +PSLN+ QA++L +E Sbjct: 124 AQVDLISYLPLKVSYPSLNLGQAIMLYAYE 153 >gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3] gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae A3] Length = 246 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 17/200 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVIDSV 71 +ILV+P+ N+G +AR M NF+ LR+V + G E + A +A ++++ Sbjct: 5 VILVNPKYSGNLGAIARTMMNFDTYDLRIVQNKLGEKPETILNDEAFIRAVHAKEILENA 64 Query: 72 RVFSNLKEAIADLHFIYATTAR---NRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGR 127 + + L+EA D+ ++ ATT N K V + P+E A + I N+ I+FGR Sbjct: 65 KFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELA---EKSISLKGNLAIVFGR 121 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQN 184 E GL NE++ L + ++S P +P +N+S AV ++++E SI + + NVKE Sbjct: 122 EDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELYSISIGNAIPYDTNVKEA- 180 Query: 185 TPATKGELLS-FLDYLEISL 203 + K LLS F D+++ SL Sbjct: 181 SKEDKDILLSIFNDFVDKSL 200 >gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 218 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 10/215 (4%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 LT L LV+P ++ ++ AD V+ + ++ L EAIAD + ++AR+R Sbjct: 3 MGLTNLVLVDPACEIDAKSLALAAGAAD-VVTNAKIVKTLDEAIADCGLVIGSSARSRTL 61 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 L P+E+ I E + V I+FGRER GLTNEE+ + + P NP + SLN+ Sbjct: 62 EWPQLDPRESGIKTIEEA-AAHPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNL 120 Query: 158 SQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213 + AV + +E +E+ + EK V E P K EL F ++LE + + F + Sbjct: 121 AMAVQTVSYEVRMAFLESQKYTGEKKVDEY--PRAK-ELELFYEHLE-KVTTQTQFINKK 176 Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ L +F R ++E+ +LRGI+S+++K Sbjct: 177 HPGMVMTKLRRMFTRARPEQQELNILRGILSSIEK 211 >gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1] Length = 255 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 13/219 (5%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ AP +A+ ++LV P+ NIG ARAM N + LR+V PR + +A + Sbjct: 1 MSSAAPS--PTAQSLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAM 58 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +A ++ S +++ L+EA+AD T+AR R + + P + ++ E Sbjct: 59 AVHAGDLLRSAKIYPTLREALADRDLSVGTSARIRADLPAPRHPAQVRGLVRE----AAA 114 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FG E GL N ++ + P + SLN++QAVLL+ +E ++ + +V Sbjct: 115 PALVFGPEETGLINSDLEQCQVTVRIPTGD-YASLNLAQAVLLVCYEFLQG-----QDDV 168 Query: 181 KEQN-TPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218 E + AT+ ++ + +L+ ++ GY V + M Sbjct: 169 PEHSRQTATREDMEAMYGHLQDTMHLIGYTDAVRGRHTM 207 >gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 28/269 (10%) Query: 1 MTPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-------- 51 MTP AP L N A ++L NIG ARAM LT+L LV P+ Sbjct: 1 MTPAAPAYLDNIA----VVLTRTSHPANIGSAARAMKTMGLTRLILVAPKLMATPMTPAP 56 Query: 52 ------------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99 P E +S AD V+D+ L A+AD A T R R Sbjct: 57 PPFDPQKPQAFRLPEESYILASGAAD-VLDAAITVPTLDAALADTVVSCALTGRKRELTA 115 Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P+E A + +G ++FG E +GL+ EE+ N +++ NP + SLN++Q Sbjct: 116 PLQTPRELAPEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQ 175 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 AV ++ +E + + + ++ Q PAT ++ ++ ++E G+F +++ Sbjct: 176 AVQVVAYE-LYSQTEADLSHLVPQKHPATHDQVAGMTAHMAELMDEIGFFN-RRNSPRII 233 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+++F R + E++ L+RG +T+ K Sbjct: 234 RRLHNLFARAKPETEDIDLMRGFFNTVGK 262 >gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 272 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 23/252 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLV-------------------NPRD-GWPSEK 56 I+L NIG ARAM LT+L LV NP+ P E Sbjct: 17 IVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPPVFDPANPQAFKLPEES 76 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+++ R+ + L+EA+AD A T+R R + P+ L Sbjct: 77 FILASGAAD-VLENARICATLEEALADTVLSCALTSRRRELTAELQTPRALTPELLSAAE 135 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + Q ++FG E +GL+ EE+ N +++ NP + SLN++QAV ++ +E + S Sbjct: 136 AEQQTALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIYSQTDSSM 195 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 E E+NT AT ++ + +++ +E+ G+F ++++ L ++F R E++ Sbjct: 196 EHLKVEKNT-ATHAQIGGMVAHMQGLMEDIGFFN-RRNGERIIRRLQNLFARAGTETEDI 253 Query: 237 FLLRGIVSTLDK 248 +LRG +T+ K Sbjct: 254 DILRGFFNTVKK 265 >gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 248 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 1/239 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + LRLV PR +A+ + + + ++ Sbjct: 6 AVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLACELYP 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L++A+AD + A + R + L P+ A L E +V ++FGRE GL + Sbjct: 66 SLEDAVADCRRVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGREDHGLHSS 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L+ ++ P + + SLN+S AV + + E + V + L + Sbjct: 126 ELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQRLAHVPMDSASDSSPPLPAHAALEAA 185 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + E L E G+ P +M L + +R E EV LLRG+V L SR + Sbjct: 186 MQDAEELLLEVGFLYPHTAAARM-AKLRQLMLRSEPSEAEVALLRGMVRQLRWASRHGA 243 >gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] Length = 228 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +++L LV P E A SA A+ V+ +F+ L EA+AD + TAR Sbjct: 1 MKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATLGEAVADCTLVIGCTARA 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R L P E A + V +FGRER GLTN+E+ L +A + P +P F S Sbjct: 60 RRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208 LN++ AV ++ +E + + E ++ PA+ +L L +L+E + Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAERAPAAAPGLRDGPASHAQLEGMFGQLGDTLDEIDF 179 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 + + M L + +R E+ +EV L+RGI+S + + + + N Sbjct: 180 HKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLAKQAGN 228 >gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] Length = 239 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 23/195 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ NIGM+AR M NF +L L+NP +E++ + +A V++ + Sbjct: 5 VILVEPEGPANIGMIARTMKNFGFNELVLINPNI---TEESYLYAVHARDVLERAAIVET 61 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +EA+ + TT + + ++ + P E A L +SG+ +GI FGRE GL Sbjct: 62 FEEALGLVDLAVGTTGKPGKRYIPDRAPMMPWELAEALQG--YSGR-IGIFFGRESIGLK 118 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189 NEE+ + ++ P + ++P +N+SQAV ++++E + K + PAT+ Sbjct: 119 NEELERMDLTVTIPTSEIYPVMNLSQAVAVILYELAKG----RRKAIHPSLEPATREEKE 174 Query: 190 ------GELLSFLDY 198 G LL LDY Sbjct: 175 ALIRTWGRLLDVLDY 189 >gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 231 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKE 79 P+ EN+G ARAM N L++ V P D P AR + +A+ ++D VR +L+ Sbjct: 3 PRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP---ARRLAVHAEELLDGVRREDSLEA 59 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+AD ++ T++R + +L P+ L R G V I+FG ER GLTN E+ Sbjct: 60 AVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQGP-VAIVFGDERSGLTNAEVER 117 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 + + + P +P PS+N++QAVLL +E S+ ++ A+ EL + L Sbjct: 118 CHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARVEETL 177 Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L+ G+ + L D+++ R L E L + TL K Sbjct: 178 ETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 226 >gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] Length = 283 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 36/260 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R+ Sbjct: 21 ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLENARI 78 Query: 74 FSNLKEAIADLHFIYAT----------TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG- 122 + L EA+ + + AT TA R +F+ +L + A LN + QN Sbjct: 79 VATLDEALDGMSHLCATAMTPRDFGPPTAAPRAHFEMLLKRERA--TLNGQALQAQNASN 136 Query: 123 ----------------IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG ER+G+ NE++ + +S P NP F SLN+ A+ ++ + Sbjct: 137 PDAAGPEAAGAEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAY 196 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + + + A ++ L + E +L G+ P KK++ L +F Sbjct: 197 EWRQALGGFAVQAATPDRVQADAAQVAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLF 255 Query: 227 IRPELMREEVFLLRGIVSTL 246 R +L EE+ +LRG+ + Sbjct: 256 NRAQLGAEEIHILRGVAKAM 275 >gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] Length = 254 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 19/258 (7%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP+L ++LV+P N+G VAR N+ +T LRLV PR +AR + Sbjct: 6 APGAPRL-------CVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMA 58 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----NERIFS 117 + V+DS + +L A+ + AT R + + P++ L S Sbjct: 59 VHGQAVLDSATHYPDLISALHGCRRVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEAS 118 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIV 174 ++FGRE GL+N+E+ LS +I+ +P +PSLN+S AV +++ E C + Sbjct: 119 QAAAALVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQPVA 178 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + ++ PA +L L+ L E G+ +M + + R + + Sbjct: 179 APALDLD----PAAPQQLEDCLEAARSLLLETGFLLEHTAHARM-AKVRGLLQRALIRSD 233 Query: 235 EVFLLRGIVSTLDKFSRQ 252 EV +LRG+V L RQ Sbjct: 234 EVAMLRGMVRQLRWALRQ 251 >gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] Length = 278 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 41/266 (15%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72 G I++V+ L NIG ARAM LTQL +V P+ P E A + +A A ++D+V Sbjct: 22 GIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPK--LPIDEDAYAHAAGAKAILDAVT 79 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-----------IVLNERIFSGQNV 121 + L++A+ D H++ AT++R R+ + VL+P++AA ++ + + Sbjct: 80 ICDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAAHRNWQL 139 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMENSI---VS 175 I+FGRE GLTNEE+ L++ I P N + LN++ AV ++ +E E ++ + Sbjct: 140 AIVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYETAELALTAKTA 199 Query: 176 SEKNV-----KEQNTPATKGE--------LLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222 +EK++ ++ + P E LL+ L+ LEI + P + K M + Sbjct: 200 AEKSIDLTFRQQWDEPPISNEQRLQLENRLLALLENLEI-------YNPAQ-SKVMPQRI 251 Query: 223 YSIFIRPELMREEVFLLRGIVSTLDK 248 + R +L +E LL+ ++ L K Sbjct: 252 NRLLSRIQLDIKEYQLLQATIAKLLK 277 >gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] Length = 243 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 21/196 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++LV+P+ NIGMVAR M NF ++L LVNP SE++ S + +A V+ + + Sbjct: 12 PSVVLVEPEGPANIGMVARTMKNFGFSRLVLVNPNL---SEESYSYAVHARDVLKNATIV 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132 +EA+ TT + F S AP L E + ++G+ VG+ FGRE GL Sbjct: 69 ETFEEALELFDLTVGTTGKPGRRFISYRAPL-YPWELRETLKGYTGE-VGLFFGRESIGL 126 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189 NEE+ + I++ P + +P +N++QAV ++++E + S + +K PAT+ Sbjct: 127 KNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSKTRPEPSVEALK----PATRDEK 182 Query: 190 -------GELLSFLDY 198 ELL L+Y Sbjct: 183 EALVRVWAELLKVLEY 198 >gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 230 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV P N+G ARAM +RLV R E+A + A ++ F L Sbjct: 6 VLVAPARAPNVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDTL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD+ + ATTAR R ++ L P E + + S V I+FG E GL+NE++ Sbjct: 65 PEALADMDLVIATTARQRGRYQHYLTPGEIRDQIRAKP-SLNKVAIVFGCEESGLSNEQL 123 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 A ++ + P+ +PSLN+ QA++L +E Sbjct: 124 AHADLLSYLPLKVSYPSLNLGQAIMLYAYE 153 >gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] Length = 241 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 15/227 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G VAR NF + LRLV PR A + + V+ S R++ L A++D Sbjct: 8 NVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAAVSDCSR 67 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + AT R ++ L P EA + Q + ++FGRE GLTN E+ LS +I+ Sbjct: 68 VVATAGR-LDHGTIPLGPPEAVLPWAISGSGQQPIALVFGREDHGLTNAELLLSQRVITL 126 Query: 147 PVNPLFPSLNISQAVLLMVWEC----------MENSIVSSEKNVKEQNTPATKGELLSFL 196 + +PSLN+S AV +++ + E +VS E E PA L + L Sbjct: 127 HSSDTYPSLNLSHAVAVVLHDIARLQTGPSPHAEPVLVSPETPETE---PAGPKALEACL 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 D E L E G+ + +M + + R + +EV LLRG+V Sbjct: 184 DDAEELLLEVGFLMKHTARARM-AKVRGLLQRGLIRADEVALLRGMV 229 >gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii B565] Length = 234 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV P N+G ARAM +RLV R E+A + A ++ F L Sbjct: 6 VLVAPARPANVGAAARAMKTMGFDAMRLVASRV-HEEEEASWVAHGAQEILTQAEAFDTL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLTN 134 EA+AD+ + ATTAR R ++ L P E + E+I S V I+FG E GL+N Sbjct: 65 PEALADMDLVIATTARERGRYQHYLTPGE----IREQIRSKPSLNKVAIVFGCEESGLSN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E++A + I P+ +PSLN+ QA++L +E Sbjct: 121 EQLAEVDLISYLPLKVSYPSLNLGQAIMLYAYE 153 >gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 200 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 9/198 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191 +E+ + ++ NP + SLN++ AV ++ +E + + E + TP + Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182 Query: 192 LLSFLDYLEISLEERGYF 209 L F +LE +L G+ Sbjct: 183 LERFYGHLEQTLLSTGFI 200 >gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 228 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +++L LV P E A SA A+ V+ +F+ L EA+AD + TAR Sbjct: 1 MKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATLGEAVADCTLVIGCTARA 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R L P E A + V +FGRER GLTN+E+ L +A + P +P F S Sbjct: 60 RRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208 LN++ AV ++ +E + + E ++ PA+ +L L +L+E + Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQLEGMFGQLGDTLDEIDF 179 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 + + M L + +R E+ +EV L+RGI+S + + + + N Sbjct: 180 HKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLARQAEN 228 >gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348] gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348] Length = 231 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 15/184 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G VAR NF + QL +VNPR KA SA ++ V V S Sbjct: 4 VILVEPEGEYNVGFVARLCKNFEVDQLYIVNPR--CDLNKALEFSAKGRDFMEKVVVTST 61 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+EA+ DL +T++ + + + P E ++ + G++FGRE GLT Sbjct: 62 LEEALRDLDLKISTSSIADSKGDMLRKSMPPWEIV-----KLMENRKTGLVFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 EEI +++ ++ P N +P LN+S AV ++++E +++ + + PA E L Sbjct: 117 REEILMTDIMVHIPANRSYPVLNLSHAVGIVLYEIWKSTHLRG-----GETGPAPSQETL 171 Query: 194 SFLD 197 S +D Sbjct: 172 SLVD 175 >gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 272 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 23/268 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEYPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTLDK 248 + S+F R E++ +LRG +TL + Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTLQQ 265 >gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus oleovorans Hxd3] Length = 260 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 18/258 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G IILV P++ ENIG RAM N L++L++V P P ++++ V++ + + Sbjct: 13 GITIILVRPRIPENIGACCRAMKNMGLSRLKVVAPEAWDPVRIMKTATHACRDVVEKIEI 72 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAP---KEAAIVLNERIFSGQNVGIIFGRERW 130 + A++ +I TTAR + VL+P E A+ L V ++FG E Sbjct: 73 VGDTATAVSPFSYIAGTTARMGRQRQMVLSPGGFAEKAVTLCRE----NPVAVMFGPEDR 128 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--AT 188 GL NE++ + ++ P + F SLN++QAVL++ +E + + + ++ P A+ Sbjct: 129 GLENEDLQYCHNLVHIPTSE-FSSLNLAQAVLVICYE-----LFGAARPNQDHFQPRLAS 182 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL D ++ L + RP + +++ R L +EV L+RG+ ++ Sbjct: 183 SFELEGMYDQMKEVLLAIDFLRP-DNPDYWMNNFRRFVSRVGLTAKEVKLIRGVCRQVNW 241 Query: 249 FSRQSSRRNNVLLQKTEK 266 + + R + L +K +K Sbjct: 242 YGEK--RYADGLAEKKKK 257 >gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07] Length = 243 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 4/235 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV+P NIG ARA+ N +L +V PR E A + +A ++D+ ++ + Sbjct: 12 ILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKTITKE-AYYRAKSAKDILDNALIYESF 70 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEE 136 +AI D + I AT+AR R + + + + S +N +IFGRE GL+NEE Sbjct: 71 DQAIEDKNLILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIFGREDNGLSNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P + +PSLN+S A+ L+ +E + ++ SS E++ AT E L Sbjct: 131 LQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRKITLDSSILKSDERDI-ATNEENEKLL 189 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 ++L L++ ++ P K++ + + + L + E+ +LRG +S + F + Sbjct: 190 EHLMEVLKKIDFYDP-RSSKQVKTRIERLLKKTRLDKMEMGILRGFLSKIMDFEK 243 >gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] Length = 254 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ NIG ARAM N + LR+V PR +A + + +A ++ S R++ Sbjct: 4 AVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARIYP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+AD TTAR R + L P + + + ++FG E GL N Sbjct: 64 TLREALADRDLSVGTTARLRAD----LPPPRHPAQVRPLVRAASAPALVFGPEETGLVNS 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELL 193 ++ + P + SLN++QAVLL+ +E ++ ++ K+ + E+ T AT+ E+ Sbjct: 120 DLEQCQVTVRVPTAE-YASLNLAQAVLLVCYEFLQAQDETAPKSTRTAERKT-ATREEME 177 Query: 194 SFLDYLEISLEERGYFRPVEKKKKM 218 + +L ++ GY V + + Sbjct: 178 ALYGHLHETMALIGYTDAVRARHTL 202 >gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 240 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 10/195 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + NIG VARAM NF LRLVN P +ARS+ NA V+ + R F + Sbjct: 13 VVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYS-IPLAEARSA-VNASHVLQAAREFGS 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EA+AD IY TTA + P +A + E + + I+FG E+ GL+NE Sbjct: 71 VAEAVADCQLIYGTTAIGERKPEH---PVDALPDVLEHV-GADKIAILFGSEKTGLSNEA 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ +++ P++ S+N+ QA ++++E + + V V PAT E L L Sbjct: 127 LSHCQRLLTIPMSATNVSMNLGQAAAVILYELVRGNAVP--LRVSTDAAPAT-AEQLGLL 183 Query: 197 D-YLEISLEERGYFR 210 D L +LEE Y + Sbjct: 184 DAVLREALEEADYMQ 198 >gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 246 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 6/238 (2%) Query: 17 IILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV+P LGE N+G +AR NF + +LRLV+PR + + + + + + + ++S Sbjct: 12 IILVEP-LGEINLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNACIYS 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL +A+ D + AT R + + K A L E + IIFGRE GL+N Sbjct: 71 NLLDAVNDCVRVVATCGRIDHGDIPLHTSKNALQWLLE-TNPKDPIAIIFGREDRGLSNS 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194 E+ ++ II+ + +PSLN+S AV +++ E N + +KN T + K EL Sbjct: 130 ELQIAQKIITLKTSEKYPSLNLSHAVAIVLHEFKYYNETSNHKKNFITYKTASAK-ELND 188 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 LD ++ L E G+ +M + + R E ++V L+RGI+ + FS++ Sbjct: 189 CLDDVKKLLLEIGFLYDHTANARM-SKIKGLLQRAEARSKDVSLIRGILRQIRWFSKK 245 >gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] Length = 249 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I+LV+P N+G VAR M NF ++L L+NP P +AR+ +++A ++DS RV S Sbjct: 6 IVLVEPLYEGNVGSVARVMKNFGFSRLVLINP---CPLGNEARARASHAQDLLDSARVCS 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-----GQNVGIIFGRERW 130 L+E A+ ATT K++ P I S + I+FGRE W Sbjct: 63 -LEEVYAESALTIATTGELS---KTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENW 118 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL N E+A S+ I + P +P +P LN+S AV L+ +E Sbjct: 119 GLNNGEVAASDLICTIPTSPEYPILNLSHAVGLVCYE 155 >gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 272 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 23/268 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P+L + I+L NIG ARAM L +L +V P Sbjct: 1 MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEYPQSFKSPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTLDK 248 + S+F R E++ +LRG +TL + Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTLQQ 265 >gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 231 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 13/223 (5%) Query: 27 NIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G ARAM T L LV PR D E+ + ++ A V+ R+ + L EA+ + Sbjct: 8 NVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLAEALDGV 67 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 AT R+ AP+ L R V +FG ER GL N+++ + + Sbjct: 68 THACATAMTPRDFGPPTAAPRPHFAELAAR--GDDRVAFVFGPERTGLANDDVYRCHVCL 125 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTPATKGELLSFLDYLE 200 S P +P + SLN++QAV ++ ++ + +V+ + + + A +G L++ + Sbjct: 126 SIPTHPDYGSLNLAQAVQILAYDWRQAQGGFPVVARTADPRLADAAAVQG----VLEHWQ 181 Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +L E G+ P E KK++ L + R L EEV +LRGI Sbjct: 182 RTLVEIGFLDP-EAPKKLMPRLNQLANRMRLTHEEVQILRGIA 223 >gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] Length = 271 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 26/266 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 + P P N+ + I+L NIG ARAM L+ L LV Sbjct: 4 LKPALPDFLNNIR---IVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTAVPP 60 Query: 47 -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP++ P E +S AD V+ + R+ + L +A+AD A T+R R Sbjct: 61 VFDPQNPQNFKLPEESFTLASGAAD-VLHNARITATLDDALADTTISCALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] Length = 248 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 7/237 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V Sbjct: 4 VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERIFSGQNVGIIFGRERWG 131 +L AI D I + R + + P++A SG V ++FGRE G Sbjct: 64 DLLTAINDCRRIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGREDRG 123 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATK 189 L+N E+ L ++ +PSLN+S AV +++ E + V++E E + PA Sbjct: 124 LSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSVTTETRCIEPPSPDPAAA 183 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 L + LD L E G+ +M + + R + EEV LLRG+V L Sbjct: 184 KALSACLDDATDLLLEAGFLLDHTASARM-AKVRDLLQRATVRTEEVALLRGMVRQL 239 >gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08] Length = 239 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 3/233 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+ NIG ARAM + + L LVNP++ +PS ++ + + + V+D + NL Sbjct: 10 VLVETSHPGNIGACARAMNSMGICNLSLVNPKE-FPSTESETRAKSGKKVLDQANIHDNL 68 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EAI + + T+AR+R+ ++ ++NE + + V I+FG E GL NE++ Sbjct: 69 NEAINTSNLVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNEDL 128 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P + SLN+S AV ++ E + S S + A+ + ++ Sbjct: 129 GKCDFHLQIPTSE-DSSLNLSHAVQIVAHEIYKGSSSSDLFTQAREVELASSQQKEKLIE 187 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++E+ LE ++ + K++ L + R +L + E+ +LRGI+S L+ S Sbjct: 188 HIELVLELLDFYDH-QNPKQVPARLRRLIKRMQLDKLEIGILRGILSNLETTS 239 >gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT Length = 196 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 67/111 (60%) Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 AR + A ++D V+ F+ L++A+AD+ F ATTAR+R F P E L+ER Sbjct: 11 ARWVAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLEQLSERKQ 70 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 71 WVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQ 121 >gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] Length = 262 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 12/252 (4%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++LV+P N+G VAR NF L LRLV PR E+AR + + +++ ++ Sbjct: 11 GLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERAQL 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQN-----VGIIFGR 127 + +L AIAD + A + R + + P EA +L + G + ++FGR Sbjct: 71 YPDLAAAIADRTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAPALVFGR 130 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----- 182 E GL+ +E+ + I+ + + SLN+S AV + + E +E+ Sbjct: 131 EDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRRCQQGGTERRPSGPAPVI 190 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PA++ L + L E L E G+ P +M L ++ R ++ EEV L+RG+ Sbjct: 191 RPEPASRELLEAALADAEELLLEVGFLLPHTAHARM-AKLRALLQRAQISAEEVALVRGM 249 Query: 243 VSTLDKFSRQSS 254 V L S++ + Sbjct: 250 VRQLRWASQRGT 261 >gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] Length = 230 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 14/228 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ ++ ENIG +AR M NF +L L N S+++ ++A+A V+D N Sbjct: 4 VVLVELKIPENIGFIARVMKNFGFEKLVLYNCN---VSKESYITAAHAKDVLDKAVKVEN 60 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 LKE + + + + TT R+R + + P L E I G+ I+FGRE +GL +E Sbjct: 61 LKEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMI-KGET-AILFGREDYGLYDE 118 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L N I+S P + +P +N+S A ++++E +S K E+ AT+ ++ Sbjct: 119 ELKLCNVIVSVPTSEEYPVMNVSHAAAVILYE------LSKGKFEFEKEEIATQKDVDRL 172 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ++Y E + + + P + +M L F R L + EV + GI+ Sbjct: 173 VEYFEKLM--KSIWFPEHRIGRMKVVLKRAFGRAALTKYEVDAISGII 218 >gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] Length = 234 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 19/193 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV + N+G++AR NFN+ +L +V P E+A + +A + RV + Sbjct: 4 IVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVAS--IEEALNYAARGKDFLLKARVTDS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIF-SGQNVGIIFGRERWGL 132 L EAI + + AT+ + + A+ LN E+IF ++V I+FGRE GL Sbjct: 62 LDEAIKGVDMVAATSDEGYSAGDML----RQAVDLNGFAEKIFPRTRSVAILFGRESTGL 117 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKG 190 T EEI+ ++ +++ P NP +P+LNISQAV +++WE + ++++ N P A+K Sbjct: 118 TREEISKADVLVTIPANPSYPALNISQAVAIVLWELWK------QRSITATNIPPLASKE 171 Query: 191 ELLSFLDY-LEIS 202 L LD +EIS Sbjct: 172 TLRQLLDLTVEIS 184 >gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 239 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 6/233 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV N+G ARAM + L LV PR D E + ++ A ++ RV + Sbjct: 10 VLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADILVRARVVA 69 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ + AT R+ AP+ + E Q VG +FG ER+GL+NE Sbjct: 70 TLSEALEGVTHACATAMTPRDFGPRTHAPRA---LFPELAAGRQRVGFVFGSERYGLSNE 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ ++ +S P + SLN++QAV L+ ++ + A + Sbjct: 127 DVYRCHSCLSIPTPADYGSLNLAQAVQLIAYDWRQALGGYPVTPRTPDPALADAAAVQGL 186 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LD+ + +L G+ P KK+L + + R +L EEV LLRGI +++ K Sbjct: 187 LDHWQRALVHIGHLDPA-APKKLLPRVNQLLNRAQLTEEEVHLLRGIATSMLK 238 >gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 271 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 37/271 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEK 56 I+L NIG ARAM L++L LV P P E Sbjct: 14 IVLSRTSHPANIGAAARAMKTMGLSRLYLVAPNLMQTPMTPNPPAFDPKQPAHFCLPEES 73 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+++ + +L EA+ A T+R R + P+E L Sbjct: 74 FTLASGAAD-VLENAVIVGSLPEALTGTVLSCALTSRRRELTSPLQTPRELTPSLLAAAQ 132 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + Q+V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ +E + Sbjct: 133 ARQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYELFSQTHQDM 192 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 + E+N AT ++ + ++E ++E+ +FR +++M+ L+S+F R + E++ Sbjct: 193 SYLIPERNL-ATADQVAGMVRHMEQAMEQLDFFRK-RNQERMVRRLHSLFSRADTTTEDI 250 Query: 237 FLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 +LRG N++ QKT+K+ Sbjct: 251 DILRGFF--------------NMVQQKTQKT 267 >gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] Length = 294 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 132/279 (47%), Gaps = 49/279 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL------------------------ 111 ++K AI D I+A +AR+R + VL P AA V Sbjct: 73 DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNNLATSLDHMNQSA 132 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME- 170 ++ + + + I+FGRE GLTNEE++L++ I P NP +P LN++ A+ ++ + Sbjct: 133 DDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQVITATFFDQ 192 Query: 171 -------NSIVSSEK---NVKEQ-----------NTPATKGELLSFLDYLEISLEERGYF 209 +S+VS+++ KE+ + PA + L+ I+L +R Sbjct: 193 FASTLTPSSLVSTKQIQGMTKEEYSLPIHIRSDWDEPAITQAQSASLERAIIALMQRLNL 252 Query: 210 RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + K + + L + R +L ++E L+R +++ ++K Sbjct: 253 AHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINK 291 >gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640] gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06] Length = 271 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 23/250 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLV----------------NPRD----GWPSEK 56 I+L NIG ARAM L +L +V NP D P E Sbjct: 17 IVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPPVFNPDDVQSFALPEES 76 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+++ + ++L EA+AD A T+R R + P++ L + Sbjct: 77 FILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAAQ 135 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ V ++FG E +GL+ EE N +++ NP + SLN++QAV ++ +E + S Sbjct: 136 RGEQVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTD-SP 194 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 ++++++ AT ++ + ++E +++ G+F ++++ + S+F R E++ Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253 Query: 237 FLLRGIVSTL 246 +LRG +T+ Sbjct: 254 DILRGFFNTV 263 >gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 264 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 8/238 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P+ ENIG AR NF + +L +V+ D + ++ A +I +RV Sbjct: 16 IILVGPKFPENIGASARIASNFGIAELIVVSEEDFDQERMLKMATHKAAHLIHGMRVCRT 75 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTN 134 EA A HFI TTAR + P+E A IV + +G VG++FG E GL+N Sbjct: 76 TAEAAAPFHFIVGTTARQGRHRPQDQTPREVMAEIV---PLLAGNRVGLMFGPEDSGLSN 132 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E++ L + P F SLN++QAV + +E + ++ + + A +L Sbjct: 133 EDLDLCQFASTIPTAG-FSSLNLAQAVAIHCYE-LYTAVHTHPFAAIPTSEFANSFDLEG 190 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +++E +L E + + M ++ R L ++E ++RGI L RQ Sbjct: 191 MYEHIEQALNEITFLHDTNRVYWM-RNIRQFLSRLRLKKKEASMIRGICRKLMWHHRQ 247 >gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330] Length = 265 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 23/235 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEKARSSSANADC 66 NIG ARAM L+QL LV P + P E +S D Sbjct: 23 NIGAAARAMKTMGLSQLVLVAPNIMATPMTPEPPEFIAEQAEQFVLPEESFILASGAVD- 81 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V+++ ++ + L EA++ A T+R R + P+E L SGQ V ++FG Sbjct: 82 VLENAKIVATLPEALSGSVLNCALTSRRRELTSPLQTPRELTPSLLAAAQSGQTVSLVFG 141 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E +GL+ +E+ N +++ NP + SLN++QAV ++ +E + E+N Sbjct: 142 NETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYELFSQVNQDMSHLIPERNL- 200 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 AT ++ + +LE ++ + +FR +++M+ L+++F R + E+V +LRG Sbjct: 201 ATADQVAGMVQHLEQTMGQLDFFRS-RNQERMMRRLHALFNRADTTTEDVDILRG 254 >gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC 73102] Length = 246 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 4/237 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S G I+LV+P NIG +AR M NF L L LVNP+ S +A + +A +I+S Sbjct: 2 SLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIES 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + L EA+ ATT R R+ + P+ A L E + +IFGRE Sbjct: 62 AVLVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEE--PEKPTALIFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NEE+ + + P + + +LN++ AV + +E + S + Q A Sbjct: 120 GLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYE-LSQSAQQFDTQTITQTELAPLD 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L + LE L + GY P +M ++ R L EV +LRGI+ ++ Sbjct: 179 VLEGYYQQLESLLLKIGYVYPHTAASRM-GKFRQLYNRAHLKTGEVAMLRGILQQVE 234 >gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine bacterium 580] Length = 248 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARA+ T L LVNP+ +P +A + +A A+ ++ + + S Sbjct: 13 IVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQ-FPHAEANALAAGAEDILANATIVST 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +++A+ D H I TAR R + +E A L S + + ++FG E GL+N+E Sbjct: 72 IEDALKDSHLIIGFTARQRELSQEHKNIREIASKLKSESHS-KKIALLFGNETNGLSNDE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191 + + + N + SLN++QA+ ++ +E +N+I+ S K +N T Sbjct: 131 VKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSEDNAIIQSSK----KNELVTHEV 186 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE L E G+ + ++ +++ L +F R + ++EV +LRGI++ + K Sbjct: 187 QNGFYLHLEQLLTEIGFLKKIQ-GDRLMQRLRLLFNRTTMEKDEVNILRGILTDIQK 242 >gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102] gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102] Length = 271 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTSEKPALPAYLDNIRIILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 126/266 (47%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P L IIL NIG ARAM L +L +V Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93 Query: 47 --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP D P E +S AD V+++ + ++L +A+AD A T+R R Sbjct: 94 VFNPDDVQSFALPEESFILASGAAD-VLENATIAASLDKALADTTIACALTSRRREITAP 152 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 153 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 212 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 213 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 270 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 271 RMQSLFGRANTQTEDIDILRGFFNTV 296 >gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 14/201 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+++LV+P+ N+G V RAM NF + QLRLV D + S+ + S A ++ F Sbjct: 6 PIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPFHSDAVK-FSVGARPLLGQAEHF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+AD+H A T R + L P E + + + V +FGRE GLT Sbjct: 65 PDLAAALADVHHSVALTRRT-GRLRGNLLPLEELSQRFQSVAAQSRVAFVFGREDRGLTT 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATKG 190 +E+AL + + SLN++QAV++ ++E IV ++ +Q P Sbjct: 124 QEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRRQDRVGIVQRDQPTHDQFEP---- 179 Query: 191 ELLSFLDYLEISLEERGYFRP 211 L LD L + GY P Sbjct: 180 -LFQQLDEL---VHRVGYVNP 196 >gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] Length = 237 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 10/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ +N Sbjct: 4 VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNN 61 Query: 77 LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EAI D+ AT++ NN + + P E + G+ V ++FGRE GLT Sbjct: 62 FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + ++ P NP +P LN+S AV ++++E +N Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154 >gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha275] Length = 271 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] Length = 245 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 98/170 (57%), Gaps = 13/170 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ NIG VARAM NF++ +L LVNP + +A + +A V+++ ++ Sbjct: 5 VILVEPEYQMNIGFVARAMKNFDVKELILVNPPE--LRGEAYKFAMHAKDVLENAKIVKT 62 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGL 132 + EA+ + TT + + ++ ++P+E A +R F G +GI FGRE GL Sbjct: 63 VDEALKIVDVAVGTTGISGKVYLPERTPISPEEFA----KRAFLYGGKIGIFFGRESKGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKN 179 +NEE+ + ++ P + +P +N+S AV ++++E + + +S+E+N Sbjct: 119 SNEELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVKAEISTEEN 168 >gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5] gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens Hrk 5] Length = 257 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 16/249 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 AK + V+P +NIG +AR+M NF L +L LV PR E R + AD V ++V Sbjct: 13 AKEVSVAFVEPLYEQNIGYIARSMKNFCLAKLYLVKPRCSVGLESRRYAMHAADIVENAV 72 Query: 72 RVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E + + TT + + + ++P E A + E +G + ++ GRE W Sbjct: 73 -IVGSLGELVGMHDLVACTTGVKGKPPLRRYVSPGEMASLFAES--TGSKL-VVIGREDW 128 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+ EE+++ + +++ NP +PSLN S A ++ +E + + +V++ + Sbjct: 129 GLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYE-----LFNKYHSVQQSLERPPRE 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV----STL 246 E+ +FL +L GY + +++L + + + ++ +L G+V T+ Sbjct: 184 EVEAFLKHLGDLTTLLGYDET--RSERLLLSIKRLLAETRFSKTDLRILFGLVRDSLETI 241 Query: 247 DKFSRQSSR 255 + R+S+R Sbjct: 242 KRTHRESAR 250 >gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 272 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 23/252 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------------DGWPSEK 56 I+L NIG ARAM L +L +V P P E Sbjct: 17 IVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPPVFDPEYPQSFKLPEES 76 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+ + + + L EA+AD A T+R R + P++ L + Sbjct: 77 FILASGAAD-VLHNAAIVATLDEALADTAIACALTSRRREITAPLQTPRDLVPELLQAAQ 135 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV ++ +E + S Sbjct: 136 RGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQT-GSP 194 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 ++++++ AT ++ + ++E +++ G+F ++++ + S+F R E++ Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253 Query: 237 FLLRGIVSTLDK 248 +LRG +TL + Sbjct: 254 DILRGFFNTLQQ 265 >gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 203 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + + + D +ID++ VF L +A+ D+ F ATTAR+R Sbjct: 1 MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHTLADALHDVDFTVATTARSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWE 167 QAV++ ++ Sbjct: 120 GQAVMVYCYQ 129 >gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 203 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + + + D +ID++ VF L +A+ D+ F ATTAR+R Sbjct: 1 MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFQTLADALHDVDFTVATTARSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWE 167 QAV++ ++ Sbjct: 120 GQAVMVYCYQ 129 >gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 266 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 128/258 (49%), Gaps = 24/258 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 +L++ N+G VARAM L LV PR WP+ E+ ++ A ++ R+ Sbjct: 6 VLINTSHAGNVGAVARAMKTMGFDDLVLVAPR--WPNVLRHEETIQRASGALDLLRQARI 63 Query: 74 FSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + L +A+ + + AT TAR+ R +F+++L KE + + + + G+ Sbjct: 64 VAGLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLK-KERPVHDSSAPAATRPTGV 122 Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEK 178 +FG ER+G++N ++ + +S P P F SLN+ AV ++ +E ++ ++ Sbjct: 123 AFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWRMALDGCGLAVPD 182 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 ++ A ++ L++ E +L + G+ P KK++ L +F R +L EE+ + Sbjct: 183 GTPARHL-ADAVQVAGMLEHWEQALTQIGFLDPA-APKKLMPRLQQLFNRAQLAPEEIHI 240 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRGI + ++ + +R Sbjct: 241 LRGIAKAIIATAQANRQR 258 >gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061] gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061] Length = 301 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 178 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D ++ G P KKK L +I R + E L+GI+ Sbjct: 239 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 293 RLKMKMGKQ 301 >gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] Length = 301 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 178 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D ++ G P KKK L +I R + E L+GI+ Sbjct: 239 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 293 RLKMKMGKQ 301 >gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] Length = 272 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 33 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 90 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 91 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 149 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 150 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 209 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D ++ G P KKK L +I R + E L+GI+ Sbjct: 210 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 263 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 264 RLKMKMGKQ 272 >gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58] gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58] gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013] gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis alpha710] gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein [Neisseria meningitidis H44/76] gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE 2594] gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis N1568] gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis OX99.30304] gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M6190] gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M13399] gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M0579] gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis ES14902] gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis CU385] gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis 961-5945] gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240013] gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis G2136] gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis H44/76] gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240149] gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M04-240196] gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis NZ-05/33] Length = 271 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] Length = 292 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 22 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 81 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 82 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 140 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 141 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 200 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 201 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 258 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 259 RMQSLFGRANTQTEDIDILRGFFNTV 284 >gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 160 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +E+ + ++ NP + SLN++ AV ++ +E Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYE 155 >gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] Length = 264 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 10/232 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRV 73 + +V + N+G +AR+M NF L++L LV+P + P +A + +A D + ++ V Sbjct: 5 AVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDVLPNATEV 64 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRERWG 131 FS L E + + T N + K V P E A + +E +V I+FGRER G Sbjct: 65 EFSYLTE---QFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGRERVG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTN+E+A + I S P + +P LN++QA ++++E E ++ + ++ K+ + A + E Sbjct: 122 LTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELRELTVEET-QHPKQAHERADEHE 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + + L E G+ P EK K + R E LRG++ Sbjct: 181 IEGLHETFSEYLHEVGH--PEEKIPKTERLFRRLAGRASPTGREARTLRGVL 230 >gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha153] Length = 271 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLIR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 247 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G +AR NF++ +LR+V+P+ S +A+ + ID+ ++F++ Sbjct: 10 VVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRYIDNCKIFNS 69 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++AI D + AT R + +N +P++ + ++ + N+GI+FGRE GL+N Sbjct: 70 IEQAIFDCDLVIATFGRIDLSNDIECESPEDISKWISSFV-EINNLGILFGREDRGLSNN 128 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ ++ I++ + +PSLN+S AV ++++E ++S + +K+++ + ++K SF Sbjct: 129 ELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNKSSKNNDKKDLQVLDLASSKQIYESF 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + E+ L + GY K + ++ + ++ +LRGIV ++ F S Sbjct: 189 KEIEEM-LIKTGYLLEHTANSK-ISKFKKFLLKAKTSSHDINVLRGIVHQINWFLNNSKG 246 Query: 256 R 256 + Sbjct: 247 K 247 >gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 311 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 22/252 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL++ N+G ARAM L LV PR W + E+ ++ A V+++ R+ Sbjct: 42 ILINTSHAGNVGATARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLNNARI 99 Query: 74 FSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPKEAAIV--LNERIFSGQ-- 119 L EA+ + + AT T R+ R +F +L EA + L + Q Sbjct: 100 VETLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQRP 159 Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +V +FG ER+G+ NE++ + +S P +P F SLN+ AV L+ ++ E + Sbjct: 160 DSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWREALGGFGIQ 219 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 E+ A + L + E +L + G+ P KK++ L +F R +L EE+ + Sbjct: 220 AAIEEPRLADAAAVSGMLKHWEEALVDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIHI 278 Query: 239 LRGIVSTLDKFS 250 LRG+ + + + Sbjct: 279 LRGVAKAMMRHA 290 >gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] Length = 251 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G AR M NF T L L+NP K R+S +AD V++ V + Sbjct: 6 IVLVEPLYEGNVGFAARVMKNFGFTDLILINPCTIGNEAKIRAS--HADDVLEHATVMT- 62 Query: 77 LKEAIADLHFIYATTAR--------NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L E H + ATT R F S PKE ++ R G + I+FGRE Sbjct: 63 LDEVFRTSHRVIATTGSLSYSACHPTRMPFYS---PKEIRDLI--RDLDG-TISILFGRE 116 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 WGL+NEE+ ++ I + P +PL+P +N+S AV ++ +E Sbjct: 117 NWGLSNEEVRRADIICTIPTSPLYPIINLSHAVGVICYE 155 >gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114] gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114] Length = 295 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 25 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENPP 84 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 85 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 143 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 144 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 203 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 204 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 261 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 262 RMQSLFGRANTQTEDIDILRGFFNTV 287 >gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum borinquense DSM 11551] gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum borinquense DSM 11551] Length = 249 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 22/236 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIADL 84 N+G +ARAM NF LT L+LVNP P +A + +A D + ++ V E + + Sbjct: 19 NVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEV--TFDEVVEEY 76 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIALSNAI 143 H + T N ++ K V P + + + E + + + ++FGRE GL N+E+A + I Sbjct: 77 HTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELARLDEI 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELLSFLDYLEIS 202 S P + +P LN+ QA ++++E S+ E + + + AT+ E+ F D E Sbjct: 137 CSIPASDDYPVLNLGQAATILMYEL--RSLTVDETQLPDVERERATESEIERFYDNFENF 194 Query: 203 L---EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 L E R + RP K +M+ L R EV L G+ F R ++R Sbjct: 195 LEHAEHRDHKRP--KTMRMIRRLIG---RAHPTDREVHTLTGL------FRRATNR 239 >gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456] gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456] Length = 239 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 101/181 (55%), Gaps = 14/181 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ V+ ++ N+G +AR NF + + LV+P S +AR +AN ++D V V Sbjct: 12 VVVGVEGEI--NLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVYMLDRVIVVD 69 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+EA+ + T+A+ + + + P+E A + R ++V ++FGRE GL Sbjct: 70 SLEEALKGVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRY---ESVAVVFGRESVGL 126 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T +E+A + ++ P NP +P LN+S AV ++++E + ++ + K+ + PA +GE Sbjct: 127 TRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYE-----LYNTRRGEKQLHEPA-RGET 180 Query: 193 L 193 L Sbjct: 181 L 181 >gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] Length = 235 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 12/181 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++V+P+ N+G +AR + NF + + +VNP+ +E + S+ ++ + +++ +N Sbjct: 5 LVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCDI-NEAIKFSAKGSEVIEKMMKITNN 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +AI D+ AT++ + K L K + ER+ + V IFGRE GLT EE Sbjct: 64 FDDAIRDVDLKIATSSIA--DIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLTREE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 IA S+ ++ P NP +P LN+S AV ++++E N ++ P E + + Sbjct: 122 IAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN---------RDNKVPTVSSEPIKLI 172 Query: 197 D 197 D Sbjct: 173 D 173 >gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] Length = 233 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 23/195 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIGM+AR M NF ++L LVNP +E++ + + +A V++ + Sbjct: 4 LVLVEPEGPANIGMIARTMKNFGFSRLVLVNPNL---TEESYAYAVHATDVLERAVIVDT 60 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ TT + F ++ L P E LN ++G+ VG+ FGRE GL Sbjct: 61 FDEALGLFDLTVGTTGKPGKRFIPYRAPLYPWELRETLNG--YTGE-VGLFFGRESIGLK 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189 N+E+ + I++ P + +P +N++QAV ++++E S E +V E PAT+ Sbjct: 118 NDELERLDLIVTIPTSDAYPVMNLAQAVAVILYEL---SKAKPEPSV-EALKPATRDEKE 173 Query: 190 ------GELLSFLDY 198 ELL+ L+Y Sbjct: 174 ALVRVWAELLNVLNY 188 >gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1] Length = 236 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 24/235 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFS 75 ++LV+P+ NIG VAR+M N ++ LR+V P E +A S + ++D+ ++F+ Sbjct: 10 VVLVEPKYQGNIGAVARSMANSGISDLRIVKT----PIETEAIYRSMHGRYILDNAKIFN 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +LKEA++ I T+ +++ K P + +GQ V ++FGRE GL E Sbjct: 66 SLKEAVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGREDNGLNYE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-----NSIVSSEKNVKEQ-NTPATK 189 E+ + N + NP +P N+S AV ++++E ++ N+ ++ + +++ +T A + Sbjct: 126 ELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIKANYSGNATITHDLIGRDKIDTLAGR 185 Query: 190 -GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ELL+ +DY E ++ +++ L I R + E F + GI+ Sbjct: 186 LEELLAKIDYNEQEID------------TLMNMLNRIIARANITDSEFFKIMGIM 228 >gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium erythraeum IMS101] Length = 248 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ + N+G VAR M N L L LVNP+ +AR + + +++ + Sbjct: 11 IVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEILEKATIVPT 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ H ATT+ +R+ + PK + L G + +IFGRE GLTN E Sbjct: 71 LPEALKGCHRAIATTSLDRSLPTHLENPKHSLPWL-----LGYSGALIFGREDRGLTNVE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELL 193 + + + + +PSLN++QAV + +E + + + E N + Q + A+ L Sbjct: 126 LNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQL-NQENNPQSQANRDLEASLDVLE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ LE L + GY P +M + ++ R +EV +LRG++ ++ Sbjct: 185 AYYQDLETILLKIGYLYPHTASSRM-EKFRRLYNRAYPSTQEVAMLRGMIRQIN 237 >gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118] Length = 286 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 39/265 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL++ N+G ARAM T L LV PR W + E+ ++ A V+ + R+ Sbjct: 6 ILINTSHAGNVGAAARAMKTMGFTDLVLVAPR--WANVLRREETIQRASGALDVLKNARI 63 Query: 74 FSNLKEAIADLHFIYAT----------TARNRNNF----------------------KSV 101 L EA+ + + AT TA R +F K+ Sbjct: 64 VDTLDEALEGITHLCATAMTPRDFGPPTATPREHFELLLNKERLTHIPRGLEADLAYKNE 123 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 + P+ + +V + +G +FG ER+G+ NE++ + +S P +P F SLN+ AV Sbjct: 124 ILPETSELVQAAVAAPERGMGFLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAV 183 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E ++ + A ++ L +LE SL+ G+ P + KK++ Sbjct: 184 QVIAYEWRLALGAFPVQSATLEPVLADAAQVAGMLGHLEQSLQAIGFLDP-QAPKKLMPR 242 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 L +F R + +EEV +LRGI + Sbjct: 243 LNQLFNRAGVTQEEVHILRGIAKAM 267 >gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] Length = 245 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 4/231 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M NF L L LVNP+ +E+A + +A +++S + + Sbjct: 8 IVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAVLVTT 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ ATTAR R+ + P+ A L E + +IFGRE GL+NEE Sbjct: 68 LPEALQGCVRAIATTARVRDWETPLENPRTALPWLLES--PSEPAALIFGREDRGLSNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P + + SLN++ AV + +E + + + A+ + ++ Sbjct: 126 LNYAQRFVRIPSSENYSSLNLASAVGICCYELAQYTAPPTTPPPSPTEL-ASLDIVETYY 184 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 LE L + GY P +M ++ R L +EV +LRGI+ ++ Sbjct: 185 QQLESLLLDIGYLYPHTATSRM-AKFRQLYNRAHLQTKEVAMLRGILRQIE 234 >gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] Length = 241 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 16/233 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFS 75 + +VD + N+G +AR+M NF L++L LV+P + P +A + A D ++ + R + Sbjct: 4 VAVVDAETPGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNARTVT 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTN 134 + + + H + T N + V P L + + + ++ ++FGRER GL+N Sbjct: 64 -FDDIVENYHTVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGLSN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-----NTPATK 189 +E+A + I S P + +P LN+ QA ++++E E ++ E EQ TPA + Sbjct: 123 DELARLDVICSIPASASYPVLNLGQAATIVLYELRELTV--DETQHPEQLHTLAETPAVE 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 G F +L P EK+ K + R + E LRG+ Sbjct: 181 GLHEEFDRFL------GAIGHPEEKQHKARRLFRRVLGRAQPTGRETKTLRGL 227 >gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] Length = 304 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 94 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 152 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 153 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 212 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 213 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESLMNDIGFFN-RRNGERLMR 270 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 271 RMQSLFGRANTQTEDIDILRGFFNTV 296 >gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 243 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 5/223 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L + +N+G VAR M NF ++L L P E A + +D V+ + V S Sbjct: 8 TVVLHQTRSTDNLGAVARIMANFGYSRLILSEPVL-KSIEGAERLAVKSDFVLRGMEVTS 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+ D + TT+R + ++VL P+EA L E G+ V ++FG E+ G+++E Sbjct: 67 DLGEALKDCVYAVGTTSRTQLKGRTVLTPEEAMQRLAEESVRGR-VALVFGGEQRGMSDE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++A +++ P + + PS+N++Q+ ++++ C + + + P K L Sbjct: 126 DLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQGLTPT---AAVEEAPGAKLGTLGA 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 L + R F + + +L++L +R L + E L Sbjct: 183 LAKRMRDVMLRAEFLNPQAPQHVLNELEQTLMRARLTQREAEL 225 >gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] Length = 330 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MT P L IIL NIG ARAM L +L +V P Sbjct: 60 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 119 Query: 50 ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 120 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 178 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QA Sbjct: 179 LQTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 238 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 239 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 296 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 297 RMQSLFGRANTQTEDIDILRGFFNTV 322 >gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus REY15A] gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus HVE10/4] Length = 237 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ ++ Sbjct: 4 VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNS 61 Query: 77 LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EAI D+ AT++ NN + + P E + G+ V ++FGRE GLT Sbjct: 62 FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + ++ P NP +P LN+S AV ++++E +N Sbjct: 117 REEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154 >gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790] gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790] Length = 235 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P+ NIG VAR+M N LT LR+V P D E AR + + ++D+ R+++ Sbjct: 9 VVLVEPKYQGNIGAVARSMANSGLTDLRIVKTPID----EDARRRAMHGLYILDNARIYN 64 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + +A++ I T+ +++ K P + +G+ V ++FGRE GL N Sbjct: 65 SFDDAVSGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNGLNNY 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E++ N I NP +P N+S AV ++++E ++ N+ E N + Sbjct: 125 ELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEMIKRVY---SGNIIESNNYISPEHFNIM 181 Query: 196 LDYLEISLEERGYFRP 211 ++ E L GY +P Sbjct: 182 INRFEELLNLLGYEKP 197 >gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] Length = 237 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ ++ Sbjct: 4 VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNS 61 Query: 77 LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EAI D+ AT++ NN + + P E + G+ V ++FGRE GLT Sbjct: 62 FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + ++ P NP +P LN+S AV ++++E +N Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154 >gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L +S K V +LV+P+ NIG ARA+ N T L L+NP E + A+ Sbjct: 2 PTLNHSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLINPVP-LQDEAYWMAWASK 60 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 D V++ ++F L E++ D I TT R +++ K+ + E + V I+ Sbjct: 61 D-VLEKAQIFRELDESLKDKALIIGTTRRRGAKRGAIIDVKDGVKRVYE-VAQNNKVAIL 118 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 FGRE GL NEE+ +I+ P + L PSLN++QAVL++ +E M Sbjct: 119 FGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELM 163 >gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] Length = 271 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 23/250 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------------DGWPSEK 56 IIL NIG ARAM L +L +V P P E Sbjct: 17 IILTRTGHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPPVFDPEHPQSFELPEES 76 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+ + + + L EA+AD A T+R R + P++ L + Sbjct: 77 FILASGAAD-VLHNAEIVATLNEALADTAIACALTSRRREITAPLQTPRDLVPELLQTAN 135 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV ++ +E + S Sbjct: 136 RGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQT-GSP 194 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 ++++++ AT ++ + ++E + + G+F ++++ + S+F R E++ Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253 Query: 237 FLLRGIVSTL 246 +LRG +T+ Sbjct: 254 DILRGFFNTV 263 >gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 241 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + +L +PQ NIG RA+ N +LRLV P + E+ + + +++ + F+ Sbjct: 10 ITVLHEPQREVNIGSTVRALLNTGFQRLRLVQPV-AYSIERLDDMAHRSGPLVEQIETFA 68 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+A++ ++ + R+R ++V P+ A + + + V +FGRE GL N Sbjct: 69 SLGEALANVSYVVGFSGRSRGERQAVSLPEFAPTL--TALAATAPVAFVFGREDRGLDNA 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I + +IS PV+P +PSLN++ AVLL ++ Sbjct: 127 AIEQCSQLISIPVDPSYPSLNLADAVLLALY 157 >gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT] gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta thermophila PT] Length = 243 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 31/240 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N+G VAR+M NF L LV P D + +A+A ++ S + Sbjct: 5 VVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCD--IGSFGMAMAAHAKDILQSAKSVDR 62 Query: 77 LKEAIADLHFIYATT----ARNRNNFK-----SVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L++A+ ++ I TT +R+ ++ + L P E A L ++ V ++ GR Sbjct: 63 LEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDK---DGTVALLLGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQ 183 E WGLTN+E+ + ++S P + +P +N+S A ++++E + I + +++ E+ Sbjct: 120 EDWGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYELGQVDSTLEIRLAGRDMLER 179 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 +T LL ++Y P K + ++ L IF R EL E L G++ Sbjct: 180 IYESTD-HLLRIINY------------PEHKIRYVVLMLRRIFGRAELTEREANTLLGVI 226 >gi|330814240|ref|YP_004358479.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487335|gb|AEA81740.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 108 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 61/97 (62%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S K I+L+ PQ+GENIG ARAM NF L++L +VNP++ WP+ KA +S A +I Sbjct: 2 SLKNISIVLIKPQIGENIGATARAMKNFGLSKLAIVNPKEKWPNTKAVYTSVKAVDIIHK 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 +VF + +A+ ++ATTAR RN K + + EA Sbjct: 62 AKVFKSTSDALRKSDIVFATTARIRNLNKKIYSLDEA 98 >gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7002] Length = 250 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+P N+G +AR M N L QL LVNP ++A + + ++ V + Sbjct: 9 IVVVEPAGALNLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLERAVVVPD 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ATT R+ V PK A L + Q +IFGRE GL+N E Sbjct: 69 LTTALTGCKKAIATTGLQRSLPMPVETPKAA---LPWFLEDDQPSALIFGREDHGLSNSE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP----ATKG 190 + + ++ P + SLN++QAV + +E S+ + ++ KE+ P A Sbjct: 126 LNQAQRLVCIPTGDAYTSLNLAQAVAVCSYEL--RSLATEQQGFPPKEKAAPLPDLADLS 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL + +LE L + G+ P +M + +++ R EV +LRGI+ ++ Sbjct: 184 ELEGYYQHLERVLLQVGFLYPHTSTSRM-ETFRNLYHRASPSSREVAMLRGILRQVE 239 >gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 250 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 2/243 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L P+ EN+G ARA N +++L LV+P P +++ ++D++ + Sbjct: 6 TIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGLLLDTLEIVP 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+A +Y TTAR K + P EAA + + +G V ++FG E GL+N+ Sbjct: 66 TLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDAGLSNQ 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194 E L +++ P SLN++QAVL++ +E + S ++ + + + AT E S Sbjct: 126 ETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFKAASGLAGDVAGQTPSRAATHAERES 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L +L + + ML + R L R+E LL G+ + Q Sbjct: 186 LFAALRETLLAIDFLKADNPDYWML-PVRRFIDRVGLRRQEFNLLMGVCRQVKWAVGQGG 244 Query: 255 RRN 257 +++ Sbjct: 245 KKS 247 >gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] Length = 304 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P+ ENIG AR N + L +V R+ + ++++ A +ID + + Sbjct: 19 IVLKNPKFEENIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHAT 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EA+A + AT+AR + + P A+ + V ++FG E GLTNE+ Sbjct: 79 VAEALAPFGRVIATSARQGRQ-RGMCPPPRTAMQAALPYLAANRVALLFGPEDRGLTNED 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194 + L + + + P F SLN++QAV ++ +E + + ++ P AT EL + Sbjct: 138 LYLCHQLTTIPTAD-FSSLNLAQAVAVLCYE-LHTAAHEAQTGRGPVVRPALATVHELEA 195 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ++E L++ G+ RP E + ++ S+ R L +E ++RG Sbjct: 196 MYGHVEQVLQKVGFLRP-EDSSYWMKNIRSLLGRVGLRAKEARVVRGFC 243 >gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] Length = 239 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 10/177 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + NIG ARAM NF + LR+VNP D PS + S+ A+ ++ + F + Sbjct: 11 VVLVATRNPLNIGAAARAMSNFGVMHLRVVNPFD--PSFREAQSAVGAEELLRNAEQFGS 68 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + EA+AD + TTA R+R + A +AA ++ E SG+ V ++FG E+ GL+NE Sbjct: 69 VAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIRE--HSGK-VAVLFGSEKRGLSNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 +++ + ++ P S+N+ QAV + ++E S S+ +++++ AT G+L Sbjct: 126 DLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIARTS--STIADMEQRR--ATAGDL 178 >gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1] gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus marisnigri JR1] Length = 232 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P N+G AR M NF T+L LVNP R+S A D + D+ R+ Sbjct: 6 IVLIEPLYEGNVGFTARVMKNFGFTRLVLVNPCTLGDDAIMRASHAR-DVLEDARRM--T 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQNVGIIFGRERWG 131 +K+ + F+ ATT + + + AP E ++ + G V I+FGRE WG Sbjct: 63 IKKVYNEFDFVVATTGEVSKSVCTPMRMPYYAPAEVREIVGD--IDG-TVAILFGRENWG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L N E+A +N I + P + ++P LN+S AV ++ +E Sbjct: 120 LANTELARANLICTIPTSEIYPILNLSHAVGILCYE 155 >gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 206 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 5/171 (2%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +LR+V+ + R + + +ID++ VF L +A+ D+ F ATTAR+ Sbjct: 1 MKTMGFARLRIVDS-EAHREPATRWVAHGSGDIIDNIEVFPTLFDALQDVDFTIATTARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R F P E +L E+ + ++FGRE GLTNEE+AL++ + P+ +PS Sbjct: 60 RAKFHYYATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPS 119 Query: 155 LNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELLSFLDYLEIS 202 LN+ QAV++ ++ + + + +KN+ E A + ++ L L+++ Sbjct: 120 LNLGQAVMVYCYQ-LASLMQQPDKNIDISDEFQLRALRSRVMRLLSTLDVA 169 >gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 294 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115 ++K AI D I+A +AR+R + VL P AA V +N+ Sbjct: 73 DIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 N + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] Length = 265 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 14/239 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW----PSEKARSSSANADCVIDSVRV 73 +LV P NIG ARA+ +L +V+PR P A S+ A D + +SV Sbjct: 13 VLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTHA-VDVLQNSV-C 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERW 130 L EA+ D+ F A + +R F LA + + + + + + +FG ER Sbjct: 71 TETLLEALKDVSFACALSGYDRE-FGPPLADLQTSCEMVKTCLEENPQEEIAFVFGTERS 129 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPA 187 GLTNEE+ L + P NP SLN++QAV + ++ + + + + E PA Sbjct: 130 GLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAHASRFEGEAPA 189 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + ++LE ++ G P E+ K M+ L I R L +V +LRGI + + Sbjct: 190 SVEAIEGLYEHLEEAMIACGALNP-ERPKLMMPKLKRILSRSGLSVPDVDMLRGICAAI 247 >gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240355] Length = 271 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 23/266 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P L IIL NIG ARAM L +L +V Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 47 --NPRDG----WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 +P D P E +S AD V+++ + ++L EA+AD A T+R R Sbjct: 61 VFHPDDVQSFVLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + P++ L + G+ V ++FG E +GL+ EE N +++ NP + SLN++QA Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQA 179 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220 V ++ +E + + ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237 Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263 >gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162] gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM 2162] Length = 236 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 5/180 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + N+G++AR NF + +L +V P ++A + +A +++ V + Sbjct: 4 VVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVASL--DEALNYAAKGRGFLENAVVTDS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNE 135 L EAI + I AT+ + +L ERIF ++V I+FGRE GLT E Sbjct: 62 LDEAIKGVDMIVATSDEGYSE-SDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGLTRE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 EI ++ +++ P NP +P LN+SQAV +++WE ++ + + NV + + GELLS Sbjct: 121 EIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRGMEA-VNVPRKASRDLLGELLSL 179 >gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 269 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 24/264 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA----------- 64 ++L PQ +N+G AR M NF L++L +V P G P + +A A Sbjct: 8 LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVLARARRM 67 Query: 65 ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++D + +L+ AI ++ TT+R + L P+ A L R G+ Sbjct: 68 ARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSAQGE- 125 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEVARAAPPPGAAPA 185 Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + + PA + + + L GY P + + +L D + R + + E Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244 Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259 V LL G + +L++ R + R + Sbjct: 245 VELLLGALRSLERTLRLAPRGDGT 268 >gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] Length = 294 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115 ++K AI D I+A +AR+R + VL P AA V +N+ Sbjct: 73 DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 N + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] Length = 294 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111 ++K AI D I+A +AR+R + VL P AA V Sbjct: 73 DIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 ++ + + + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] Length = 294 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115 ++K AI D I+A +AR+R + VL P AA V +N+ Sbjct: 73 DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 N + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 203 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + + + D +ID++ VF L +A+ D+ F ATTA +R Sbjct: 1 MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRTLADALHDVDFTVATTACSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWE 167 QAV++ ++ Sbjct: 120 GQAVMVYCYQ 129 >gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 239 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCVIDSVRV 73 ++IL P+ NIG V RAM N LRLV+P P + A S+ D V+ ++ V Sbjct: 5 IVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDP---CPFDPATISAVAHRPDPVLANLTV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++L EAIAD+ ++ T+ R ++ A +R S V I+FG E GL+ Sbjct: 62 HAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +E+ L I+ P+ +P LN++QAVLL+++E + Sbjct: 122 RDELVLCQEILGLPMASDYPVLNLAQAVLLVLYELQQ 158 >gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] Length = 263 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ V+ + N+G +AR M NF L +L L+NP E+A + +A +++ ++ Sbjct: 31 VVFVECESPGNVGFLARTMGNFGLNKLVLINP--CTLKEEAYYQATHARDTVENAMIYDT 88 Query: 77 LKEAIAD--LHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + D + FI +T ++ + L P+E A +N + I+FGRE G Sbjct: 89 VGEFVKDKKIDFIIGSTGAPGGSYNISRIPLKPEELAKSMN----YNDKIAILFGREGNG 144 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 LTN E+ + + I+S P +P +P +NIS A ++++E +N Sbjct: 145 LTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKN 184 >gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1] gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 250 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 12/229 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P+ NIG VAR+M N L++L +V R P ++A + S ++++ + + Sbjct: 13 VVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNR---PDDEAFARSMGGRQILENAEIVDS 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+E + + T++ +N K P + + V ++FGRE GL NE Sbjct: 70 LEEIVHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGREDDGLRNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS- 194 E+ L N I P NP +P N+S AV ++++ M S V S+ E P + L+S Sbjct: 130 ELDLCNYFIYIPGNPDYPVYNLSHAVAIVLY-VMYRSYVPSDMIQHESIKPEHEVLLMSN 188 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 LD +++S P K + L I R + E F L GIV Sbjct: 189 ILDIMKLSR------YPAHKMRNAEVMLRRIIGRSMITEREYFKLMGIV 231 >gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2] gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2] gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2] Length = 237 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 10/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIG VAR NF + +L +VNPR SE R S+ + +++ ++ + Sbjct: 4 VVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI-SEAFRFSAGGRE-ILEKAKIVNT 61 Query: 77 LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +AI D+ AT++ NN + + P E ++ G+ + +IFGRE GLT Sbjct: 62 FDKAINDVDIKIATSSIADNNGDILRKSIRPWEILPLI-----QGKKIALIFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + ++ P NP +P LN+S AV ++++E +N Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154 >gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1] gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.] gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus kodakarensis KOD1] Length = 235 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 23/195 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIGM+AR M NF ++L L+NP +E++ + + +A V+++ + + Sbjct: 4 VVLVEPEGPANIGMIARTMKNFGFSRLVLINPNL---TEESYAYAVHARDVLENALILDS 60 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++A+ F TT + F ++ L P E ++ + + G+ VGI FGRE GL Sbjct: 61 FEKALELFDFTVGTTGKPGKRFIPHRAPLMPWELVGLIKD--YPGE-VGIFFGRESIGLK 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-- 191 NEE+ + ++ P + +P +N++QA ++++E S E V E PAT+ E Sbjct: 118 NEELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYEL---SKKRPEPYV-EALKPATREEKE 173 Query: 192 --------LLSFLDY 198 LL+ LDY Sbjct: 174 ALVRTWEKLLNTLDY 188 >gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter fumaroxidans MPOB] Length = 257 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 10/236 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P ENIG AR+ N + +L +VNP D + ++ A V++++ ++ + Sbjct: 10 IVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDVVEAMEIYDD 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+A + TTAR + + V P++ A L I I+FG E GLTNE+ Sbjct: 70 LRNALAPFRHVVGTTARLGSRRQRVRNPRQMADELVS-ISRENEAAILFGTESSGLTNEQ 128 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194 + + +++ P F S+N++QAV+++ +E + ++ + ++ P A + EL Sbjct: 129 LRFCDFLVTIPTAD-FASINLAQAVMIVAYE-----LYTANREEPQRFVPRLAARRELEG 182 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 D L +L + ML + F R L EV ++RGI +D + Sbjct: 183 MYDQLRDTLARINFINQDNPDYWML-SVRRFFSRIGLRAGEVKIVRGICRQIDWYC 237 >gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] Length = 294 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111 ++K AI D I+A +AR+R + VL P AA V Sbjct: 73 DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 ++ + + + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] Length = 294 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I++V L NIG ARA+ L L +VNPR P + + +++A A ++D + Sbjct: 15 IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111 ++K AI D I+A +AR+R + VL P AA V Sbjct: 73 DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 ++ + + + I+FGRE GLTNEE++L++ I P N +P LN++ A+ Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182 >gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] Length = 231 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 22/238 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G V R+M NF L LVNP +AR+ S +A +++S Sbjct: 7 IVLVEPLYQGNVGSVTRSMENFGFDDLVLVNP--CKLEGQARAMSCHARDLLESTPKVDT 64 Query: 77 LKEAIADLHFIYATTA-----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EAI D + T+ +++ P E E + + +FGRE G Sbjct: 65 LEEAIEDTDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRE---TNGKIAFLFGREDNG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 T EE+ + I++ P + +P +NIS A + ++E N+ P +G Sbjct: 122 FTREELKRCDMIMTIPTSEKYPVMNISHAATIAMYEM---------SNLPIGERPIAEGF 172 Query: 192 LLSFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L L D+ E L + + P K +K L IF R EL EV LRG++ + + Sbjct: 173 DLQLLYDHFEQVLADVKH--PTHKMEKTALMLKRIFGRAELTPREVQTLRGVLRDIQR 228 >gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] Length = 228 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 4/151 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N G + R NF + ++ V P+ E+ + +AN +D V+V + Sbjct: 5 LVLVEPEGKINFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVVDD 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 KEA+ L + + + + + P E L E+ + + ++FGRE GLT EE Sbjct: 65 YKEALEGLVVCTSAKVSSADPLRDFVLPWE----LKEKFGEPERLTLVFGRESVGLTREE 120 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +A++ P +P +P +N+S AV +++WE Sbjct: 121 LKECDALLHVPASPQYPVMNLSHAVAVVLWE 151 >gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 291 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++ ++ + Sbjct: 53 IVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAEIYDD 109 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 I+ + I AT++ N +F+ + L P++ ++++ G + ++FGRE GL Sbjct: 110 FASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQ---GGKIALVFGREDDGL 166 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 NEEI N I+ P NP +P N+S AV ++++ Sbjct: 167 RNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY 200 >gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380] gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380] Length = 166 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+PQ NIGMVARAM NF +++LRLVNP + +AR + A ++ RVF + Sbjct: 11 VILVEPQSPGNIGMVARAMGNFGVSELRLVNPCT-YLHPEARKFAVRAAPLLGKARVFPD 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ADL A T R + L A L + + + VG++FGRE GLT++E Sbjct: 70 LASALADLPMSVAAT-RRAGKLRGELLDVADAARLAAGLPAVEGVGLVFGREDAGLTSDE 128 Query: 137 IA 138 ++ Sbjct: 129 VS 130 >gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728] Length = 251 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++ ++ + Sbjct: 13 IVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAEIYDD 69 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 I+ + I AT++ N +F+ + L P++ ++++ G + ++FGRE GL Sbjct: 70 FASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQ---GGKIALVFGREDDGL 126 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 NEEI N I+ P NP +P N+S AV ++++ Sbjct: 127 RNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY 160 >gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07] Length = 243 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 16/241 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV+P NIG ARA+ N +L LVNPR +E+A + +A ++++ ++ + Sbjct: 12 ILVEPSHPGNIGACARAIKNMGFKKLALVNPRKKI-TEEAFHRAKSAKDILENTVIYKSF 70 Query: 78 KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 AI D + I AT+AR R + + K + V ++ GI+FGRE GL+NEE Sbjct: 71 DLAIGDKNLILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNGLSNEE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATKGEL 192 + + + P + + SLN+S A+ ++ +E +N I+ +E V+E + +L Sbjct: 131 LQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRKIVFDNKILKTE--VREVVSNLENEKL 188 Query: 193 LSFLDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L L +E+ L++ ++ P K K +D L + L + E+ +LRG +S + F Sbjct: 189 LEHL--MEV-LKKIDFYDPKSSKQVKTRIDRLIK---KTRLDKIEMGILRGFLSKIIDFE 242 Query: 251 R 251 + Sbjct: 243 K 243 >gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] Length = 283 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 9/155 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRV 73 ++L + Q NIG V RAM N + LRL+ P P + R D +++ ++ Sbjct: 10 TVVLYESQDSINIGGVVRAMKNMGVRDLRLIRP---CPYDPNRVEQVAHDTRDIVERIQH 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 F + EA+AD ++ + R + P+ AA+ L E F+ Q V I+FGRE GL Sbjct: 67 FETIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLE--FAQQGRVAIMFGREDHGL 124 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 NE + SNAI + P F SLN++QA LL ++E Sbjct: 125 PNEALDRSNAICTIPTTEHF-SLNVAQACLLALYE 158 >gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1] gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1] Length = 275 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 43/268 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 +L++ N+G ARA+ L LV PR WP+ E+ ++ A V+ + R Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPR--WPNVLRKEETIQRASGALDVLGNAR 62 Query: 73 VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVL--------------APKEAA 108 V L+EA+ + + AT T R+ R +F+ +L A EAA Sbjct: 63 VVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEAA 122 Query: 109 IVLNERIFSG--------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + + + V +FG ER+G++N+++ S+ +S P NP F SLN+ A Sbjct: 123 PPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAA 182 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218 + ++ +E + + V+ P A ++ L + E +L G+ P KK+ Sbjct: 183 IQVVAYEWRQ--ALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPA-APKKL 239 Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L +F R +L EE+ +LRG+ + Sbjct: 240 MPRLNQLFNRSQLTAEEIHILRGVAKAM 267 >gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 251 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 14/179 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 IIL P+ NIG V R M N + LR+ ++ + + + +A V R + Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFYP 65 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKEA +D + T+ R + K + ++P++ + L+ + F G +G++FG ER Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPED--LCLDLKKFYGGRLGLVFGNERT 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187 GL +EE+ + + ++ P F S N+S AVL++ + S+ +EKN + E++ P+ Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY-----SLYIAEKNNPLTEKDNPS 177 >gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 266 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 34/259 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDRARVV 64 Query: 75 SNLKEAIADLHFIYAT--TARN--------RNNFKSVLA--------PKEAAIVLNERIF 116 L EA+ + + AT T R+ R +F+ +L P E A + + + Sbjct: 65 DTLDEALEGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSIPAEDAGLTDNQPT 124 Query: 117 SG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++ Sbjct: 125 PGAVCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRAA 184 Query: 172 ----SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 +V V + +G L + E +L G+ P KK++ L +F Sbjct: 185 LGGFPVVEHTPEVHRADMAQVQG----MLGHWEQALAHIGFLDPA-APKKLMPRLNQLFN 239 Query: 228 RPELMREEVFLLRGIVSTL 246 R +L +EE+ +LRG+ + Sbjct: 240 RAQLTQEEIHILRGVAKAM 258 >gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 277 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 41/272 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR W + E+ ++ A V+++ R+ Sbjct: 6 ILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WSNVLRREETIQRASGALDVLENARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNERIFSGQNV 121 + L EA+ + + AT R+ +P+E AA L E G Sbjct: 64 VATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLARRQSADAAHPLAELALEGGIA 123 Query: 122 GI----------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + +FG ER+G+ NE++ + +S P NP F SLN+ Sbjct: 124 PVPPADADPVSAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGA 183 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 A+ ++ +E ++ + PA ++ L + E +L + G+ P KK++ Sbjct: 184 AIQVIAYEWRLALGGFPVRDAAPASVPADAAQVAGMLAHWERALVDVGFLDPA-APKKLM 242 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +F R + EE+ +LRG+ + + +R Sbjct: 243 PRLNQLFNRAQPTPEEIHILRGVAKAMSEAAR 274 >gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] Length = 215 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 9/218 (4%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M L QL LV+P+ E+ + +A A + + ++ L+EA+ D + ++AR+ Sbjct: 1 MKVMGLNQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGTLEEAVEDCGLVVGSSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R +L P+E + G+ V ++FGRER GLTNEE+ + + P NP + Sbjct: 60 RTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEY 116 Query: 153 PSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFR 210 SLN++ AV + +E ++ S+ + E EL F ++LE + E + Sbjct: 117 SSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEMFFEHLEKVMVETQFIN 176 Query: 211 PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ ++++ L +F R +E+ +LRG++++++K Sbjct: 177 K-EQPGQVMNKLRRLFSRARPETQEINILRGVLTSIEK 213 >gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1] gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus marinus F1] Length = 231 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + N+G +AR NF + +L LV P E+A +A A + + + Sbjct: 5 VVLVGIEGSVNLGFIARTCVNFGVDELYLVKP--AADLEEALRYAAKASDYLKKAIIVDD 62 Query: 77 LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +AI D+ + ATTA+ + + + ++ ++ R+ + I+FGRE GLT Sbjct: 63 LVDAIKDVDLVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRV---NRLAILFGRESTGLT 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 +E+ ++ +++ P NP +P LN+SQAV + +WE + + + V+ +N P + G Sbjct: 120 RKELRYADVLVTIPANPEYPVLNLSQAVAVFLWE------IWNIRGVRAENIPPSAG 170 >gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] Length = 240 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L P+ +NIG V RAM N + +LR+ + E+ + +AD + + R F Sbjct: 5 IIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARFFE 64 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L++A+ D + TT R KS +AP++ A E+ I+FG ER Sbjct: 65 PSVEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQ--GAGKAAIVFGNERT 122 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GLT++E+ + + I+ P FPSLN+S AV ++ +E Sbjct: 123 GLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYE 159 >gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] Length = 234 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 19/233 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + LV ++ EN+G VAR M NF +L L N + S K ++++A ++ + V Sbjct: 4 VYLVGLKIPENVGFVARVMKNFGFEKLYLYNCKVTTVSFK---TASHARDILRNAVVLRK 60 Query: 77 LKEAIADLHFIYATTARNRNNF-----KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++ + TT ++ K + P+E L + G+ + + FGRE +G Sbjct: 61 FDDILDHVNMLVGTTGVTAYSYERYIRKPIFTPEEFRNFLEGK--KGE-IAVAFGREDYG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEE+ L + ++S P NP +P +N+S AV ++++E +S K E T T E Sbjct: 118 LFNEELELCHMLVSVPTNPEYPVMNVSHAVAVILYE------LSKGKYGLEDKTIVTARE 171 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + ++ E + E Y R ++ K+ L I R + R E+ +L GIV+ Sbjct: 172 IEKLVENFEKLMLETWYPRHRIERTKI--ALRRILGRSLITRRELAVLHGIVT 222 >gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] Length = 233 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ V+P+ NIG +AR M NF LT L L+NP + ++ + +A V+ + ++ Sbjct: 4 VVFVEPESPGNIGFLARTMKNFGLTNLVLINPCE--LKNESYYQAMHARDVVSNCEIYET 61 Query: 77 LKEAI--ADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+E + A++ ATT ++ K + P+ L++ I G N+ +IFGRE G Sbjct: 62 LEEFLEKANISTAVATTGNAGGSYNISKIAVTPE----TLSDSINYGGNICLIFGREGNG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L+N+EIAL + I+S P + + +N++ A ++ +E Sbjct: 118 LSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYE 153 >gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] Length = 238 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 104/197 (52%), Gaps = 3/197 (1%) Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 P E +S AD V+ + + + L EA+AD A T+R R + P++ L Sbjct: 38 LPEESFILASGAAD-VLHNAEIVATLDEALADTAIACALTSRRREITAPLQTPRDLVPEL 96 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV ++ +E Sbjct: 97 LQAAQRGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 156 Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 + S ++++++ AT ++ + ++E +++ G+F ++++ + S+F R Sbjct: 157 T-GSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANT 214 Query: 232 MREEVFLLRGIVSTLDK 248 E++ +LRG +TL + Sbjct: 215 QTEDIDILRGFFNTLQQ 231 >gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] Length = 231 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 14/173 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + N+G +AR NF++ +L LV P E R ++ D + ++ + + Sbjct: 5 VVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL-GEALRYAAKARDYLKKAI-IVDD 62 Query: 77 LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +AI D+ + ATTA+ + + + K+ A ++ R+ + I+FGRE GLT Sbjct: 63 LADAIRDVDLVVATTAKGYSVGDVVRQAVPLKDFADMIRGRV---NRLAILFGRESTGLT 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 +E+ ++ +++ P NP +P LN+SQAV + +WE + + K ++ +N P Sbjct: 120 RKELRYADVLVTIPANPEYPVLNLSQAVAVFLWE------IWNIKGIRAENIP 166 >gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z] gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum labreanum Z] Length = 248 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 17/230 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P NIG AR M NF + LVNP ARSS A D + ++ R+ + Sbjct: 6 IVLVEPLYEGNIGFAARVMKNFGFHNMVLVNPPKLTMECTARSSHAK-DVLENAERI--S 62 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133 L+E A ATT +++ + P + L E I G+ + I+FGRE WGL Sbjct: 63 LEEVFARSDLCIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGR-ISILFGRENWGLN 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA + + + P + +P +NIS A+ ++ +E + + A K E+ Sbjct: 122 NEEIAKCDIVCTIPTSDEYPIMNISHAIGIVCYELAHLQ--------RGEYLLANKTEMN 173 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + ++E LE G P+EK++ + + R L E L GI+ Sbjct: 174 ALYAHIERFLE--GIQHPIEKRETTVLLARRVLGRTRLTVREASTLHGIM 221 >gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] Length = 250 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74 I+L P+ EN+G ARA N + +L LV+P + E+AR +++ V+D + + Sbjct: 6 TIVLFRPKFSENVGAAARACANMGVGRLVLVDP-PAFDMERARPMATSKGGLVLDRLEIC 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+A +Y TTAR KSVL P +AA + + G V ++FG E GL+N Sbjct: 65 GTLAEAVAGAETVYGTTARLGGWRKSVLTPGQAAGGAVKTLQGGGGVAVVFGPEDAGLSN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP---AT 188 +E L + +++ P SLN++QAVL++ +E I + K ++E Q +P AT Sbjct: 125 QETQLCSRLVNIPTADEATSLNLAQAVLVVCYE-----IFKASKGLEEEVDQPSPSRAAT 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 E S L SL + + ML + R L R E LL G+ Sbjct: 180 HAERESLFAALRESLLAIDFLKADNPDYWML-PVRRFIDRVGLKRHEFNLLMGVC 233 >gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] Length = 228 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 10/154 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N+G VAR NF + +L +V P+ S A SA + ++ + ++ N Sbjct: 4 VVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCDINS--AIKFSAKGESILRNAKIVDN 61 Query: 77 LKEAIADLHFIYATT--ARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ D+ AT+ A N+ + + + P E V+ + + +IFGRE GLT Sbjct: 62 YDDALKDVEIKIATSSIANNKGDILRKAVFPWELPSVMK-----SEKIALIFGRESVGLT 116 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 EEI+ ++ ++ P NP +P+LN+S AV ++++E Sbjct: 117 REEISKADFLLFIPANPNYPTLNLSHAVGIVLYE 150 >gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 251 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 14/179 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 IIL P+ NIG V R M N + LR+ ++ + + + +A V + R + Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFYP 65 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKEA +D + T+ R + K + ++P++ + L+ + F G +G++FG ER Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPED--LCLDLKKFYGGRLGLVFGNERT 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187 GL +EE+ + + ++ P F S N+S AVL++ + S+ +EKN + E + P Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY-----SLYIAEKNNPLSENDNPG 177 >gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 171 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 11/159 (6%) Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 +L P+ + + E+ G V ++FGRE GLTNEE+ + + P +P F SLN++ A Sbjct: 7 LLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAA 66 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTP--------ATKGELLSFLDYLEISLEERGYFRPV 212 V ++ +E + SE+ E + P AT E+ F +LE +L + G+ P Sbjct: 67 VQVLSYEVRMAWLALSEQG--EASRPASAHSAELATMDEMEGFYGHLESTLVDIGFLDP- 123 Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 EK + ++ L +F R E+ R E+ +LRG+++ K +R Sbjct: 124 EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVAR 162 >gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus fervidus DSM 2088] gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus fervidus DSM 2088] Length = 231 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 25/240 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ V+P+ NIG +ARAM NF L +L L+NP S++A + +A +I + +V+ + Sbjct: 7 VVFVEPKTAGNIGFMARAMKNFGLKKLILINP--CKLSKEAYYHAVHAKDIIKNSKVYES 64 Query: 77 L-----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L KE I L A +RN + + P+ L E I +N I+FGRE G Sbjct: 65 LNKMLEKENINLLVGTSGVVAGDRNIERISVTPE----YLAENI--QKNTAILFGREDHG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPAT 188 L + E+ + + I++ P + +P +N+S A ++ +E ME++ ++ + Sbjct: 119 LYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFKKMEDTCEIEKEIASYKEKELL 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K E+ + L++ P+ KK+ + +I R L ++E +L GI ++ + Sbjct: 179 KKEINEVVSKLDM---------PIHKKRNAIKVFKNIIGRSFLTKKEFHVLMGIFRSIKR 229 >gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix DSM 17093] Length = 248 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 15/228 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I+LV P+ N+G ARAM NF L L LV P+ P +A + +++A V+ Sbjct: 16 IVLVRPKDPANVGAAARAMKNFGLGDLHLVAPQR--PIGRRAYALASHAQDVLQRAVEHE 73 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ EA+ + TTAR R + + P+EAA L + + ++FG E +GL+N+ Sbjct: 74 SVAEALKGCTLVLGTTARERREGR-MYTPREAAQTLTP-----EGLAVLFGPEDFGLSND 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ I P + SLN++QAV L+ +E S + E+ A + L Sbjct: 128 DLKHCQGYIRIPTAA-YASLNLAQAVQLVAYEWFVTSQEQPPPSPPEER--AARELLEGM 184 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLY-SIFIRPELMREEVFLLRGI 242 D+L +L GY +++ + L+ +IF R +L EV LRG+ Sbjct: 185 YDHLLKTLHLIGYTDA--QRQGSAERLFRAIFDRADLSAREVAALRGL 230 >gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] Length = 225 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G ARAM TQL L+ + E AR + A ++D+ RV + Sbjct: 4 VVLVEPARAANVGAAARAMKTMGFTQLILIGSQPHLEDE-ARWVAHGATDILDNARVLDS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ + ATTAR R + ++ L P+E AI L + Q++ ++FGRE GL+N+E Sbjct: 63 FDDLRAEFDLLIATTARERGSPRTFLNPEELAITLGQS--GAQSMALVFGRESSGLSNQE 120 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW--ECMENSIVSSEKNVKEQNTPATKGELLS 194 ++ + P+ +PSLN+ QAV++ + +E +I ++ E+ + K + Sbjct: 121 LSQCDLFSYVPLAGDYPSLNLGQAVMVYTYALSGVERTIGLQTRDADERQIQSLKHKANE 180 Query: 195 FLDYLEISLEERGYFRP 211 + ++ L E+ RP Sbjct: 181 LAN--QLGLSEQDKLRP 195 >gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] Length = 235 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+PQ NIG V RAM N + L +V RD + + + + +A + + F + Sbjct: 6 IVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARD-YDENRVLTLALHARDIWHNALRFPD 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + A+ D F T R R F+ L P+E A ++ I SG V +FGRE GL + Sbjct: 65 IDAALEDCVFSAGIT-RRRGKFRKYFSLLPEEFAKRISA-IESG-TVAAVFGREADGLRD 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191 +E+A + + P +P FPSLN+S AV ++ +E C S V+ + +K ++ Sbjct: 122 DELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRTPSSVTFQP-IKRRDVDKVAAT 180 Query: 192 LLSFLDYLEISLEERGYFRPVEK 214 ++ D + G+F+ EK Sbjct: 181 IVDNFDAI-------GFFKQDEK 196 >gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299] gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299] Length = 467 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 26/149 (17%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-----------------PSEKARSS 60 +L PQ +NIG +AR M NF +T LR+V P G P +AR+ Sbjct: 81 VLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAIHPPEVRARAP 140 Query: 61 --------SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + +AD ++ R + EA+AD+ F+ ATTAR R N S+ + A+ VL Sbjct: 141 LSDEAHKFAVHADWLLRDARRCATADEALADVAFVAATTARPRENL-SIADVRAASEVLR 199 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +G V ++FG E GLTN+E+A +N Sbjct: 200 RHAANGTKVAVVFGNEATGLTNDELARAN 228 >gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] Length = 267 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 30/256 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 7 VLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVVD 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEA------------------AIVLNERIFS 117 L+EA+ + + AT R+ P+E A + + S Sbjct: 67 TLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDVRSVSEVDAGLTDNLPTS 126 Query: 118 G-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECME 170 G + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ W Sbjct: 127 GAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVAL 186 Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 E + A ++ L + E +L G+ P KK++ L +F R + Sbjct: 187 GGFPVVEHTPEAHR--ADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 243 Query: 231 LMREEVFLLRGIVSTL 246 L +EE+ +LRG+ + Sbjct: 244 LTQEEIHILRGVAKAM 259 >gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] Length = 266 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 30/257 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 5 FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVV 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEA------------------AIVLNERIF 116 L+EA+ + + AT R+ P+E A + + Sbjct: 65 DTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSVSEVDAGLTDNLPT 124 Query: 117 SG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECM 169 SG + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ W Sbjct: 125 SGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVA 184 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 E + A ++ L + E +L G+ P KK++ L +F R Sbjct: 185 LGGFPVVEHTPEAHR--ADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRA 241 Query: 230 ELMREEVFLLRGIVSTL 246 +L +EE+ +LRG+ + Sbjct: 242 QLTQEEIHILRGVAKAM 258 >gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 269 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 14/192 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ N+G VARAM + L +L +V P+ +K+ ++AN+ ++D+ +V Sbjct: 6 VVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNAKVVHK 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTNE 135 ++AI D A +R F S + K + L++ + + ++FGRE GL E Sbjct: 66 FEDAIGD---CSCAVAYSRRIFASSI--KHTMVQNLSDMLPEDGTIALVFGRESCGLALE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKE------QNTPAT 188 E+ PV P SLN+ QAV + ++E C ++ + E K + PAT Sbjct: 121 EVNACTYQCEIPV-PGLMSLNLGQAVSISLYELCRSGALANGEGRAKRTTRGVAETGPAT 179 Query: 189 KGELLSFLDYLE 200 ++ F +L+ Sbjct: 180 IQQIDGFKKFLD 191 >gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 237 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 19/207 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68 ++L+ P+ EN+G VARAM NF D W + R + +A+ ++ Sbjct: 7 LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAEELL 57 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D R+ L EA+AD ++ T++R K L P E A ER +G+ I+FG E Sbjct: 58 DRPRLVRTLDEAVADCAWVVGTSSRTVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GLTN+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPPRAAEAGAT 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215 EL + D L +L G+ E+ Sbjct: 176 DAELTAVEDALRAALRGGGFLAGPERH 202 >gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8] gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei 6A8] Length = 261 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I+LV P N+G AR M NF T+L LV+P P E+A+ +++A V+ + + + Sbjct: 6 IVLVAPLYEGNVGFAARVMKNFGFTRLVLVDP---CPLGEEAKGRASHAQDVLGNAEICT 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV----LNERIFSGQN-VGIIFGRERW 130 +++ A + ATT + KSV P L ERI + V I+FGRE W Sbjct: 63 -IEDVFARSSIVVATTGQVS---KSVCNPMRMPFYSPRELRERIGIAEGRVSILFGRENW 118 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL N+E+ S+ I + P + +P +N+S AV ++ +E Sbjct: 119 GLNNDEVKRSDMICTIPTSDEYPIMNLSHAVGIVCYE 155 >gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] Length = 241 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 25/249 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVF 74 + +VD + N+G +AR+M NF L +L L++P D +A + A + ++ R Sbjct: 5 AVAVVDAETPGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPEAREI 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133 S E + + H + T N + K V P L + + + I+FGRER GLT Sbjct: 65 S-FDELVTEYHTVGCTAITNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRERVGLT 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPATKG 190 N+EI + + S P + +P LN+ QA ++++E ++ + + P +G Sbjct: 124 NDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELRSLTVEDTQLPDPTHDRAAQPEIEG 183 Query: 191 ---ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + FLD ++ P EK+ K + R E LRG+ Sbjct: 184 LHEQFAGFLDAID---------HPEEKRAKTRRLFQRLIGRAHPTGRETTTLRGLF---- 230 Query: 248 KFSRQSSRR 256 RQ+S+R Sbjct: 231 ---RQASQR 236 >gi|301429526|dbj|BAJ12142.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein [Pseudomonas putida] Length = 135 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPLLQKIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEI 137 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEEL 133 >gi|301429516|dbj|BAJ12137.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein [Pseudomonas putida] Length = 133 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPLLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEI 137 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEEL 133 >gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 5/153 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ V+P+ NIG +ARAM NF L L L+NP + ++A + +A +++ ++ + Sbjct: 13 VVFVEPETPGNIGFLARAMKNFGLRTLILINPCE--LEDEAYYQAMHARDIVEGALIYRD 70 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E I L F+ TT ++ P + L + I I+FGRE GL+N Sbjct: 71 LSEMIDSLEPDFLVGTTGVPGGSYNVDRIPLRPS-QLADAIRPSSGTFILFGREGDGLSN 129 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 EEI L + ++S P + +P +NI+ A ++ +E Sbjct: 130 EEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYE 162 >gi|301429520|dbj|BAJ12139.1| tRNA (cytidine/uridine-2'/O-)-methyltransferase- like protein [Pseudomonas putida] Length = 141 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPLLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEI 137 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEEL 133 >gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 238 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 79/146 (54%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+P NIG ARA+ T LRLV P+ S AR+ + ++ ++++ + +L Sbjct: 7 VLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGSEHILENAPQYEDL 66 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + A+TAR+R ++ ++ +L + V I+FG ER GL+N++I Sbjct: 67 AGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSGLSNQDI 126 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLL 163 + + + P PSLN++QAV++ Sbjct: 127 QTCDLVTTIPQITPQPSLNLAQAVMI 152 >gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 237 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 19/207 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68 ++L+ P+ EN+G VARAM NF D W + R + +A+ ++ Sbjct: 7 LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAEELL 57 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D R+ L EA+AD ++ T++R K L P E A ER +G+ I+FG E Sbjct: 58 DRPRLVRTLDEAVADCAWVVGTSSRTVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GLTN+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGAT 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215 EL + D L +L G+ E+ Sbjct: 176 DAELTAVEDALRAALRGGGFLAGPERH 202 >gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] Length = 251 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 3/241 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P++ ENIG ARA+ N L LRLV+P D ++A V++S+ V + Sbjct: 14 VVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQGQRVLESMTVSDS 73 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+AD ATTAR +++ P++AA + G V ++FG E GL++E+ Sbjct: 74 LAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRGP-VAVVFGPEDRGLSHEQ 132 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L I+ P + SLN++Q+V+++ +E + + ++ TPA GE+ + L Sbjct: 133 VDLCRLSINIPTSQ-ASSLNLAQSVIVLAYELRLAAENGAGLERRKLPTPAPLGEIQALL 191 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 +L+ + G+ + L + R + +EV RG+ ++ + +R+ Sbjct: 192 AHLQEAFVNIGHLD-ANNPAHFMRLLKAPLERAAMTSKEVRAWRGVARQVNWLHGRLARK 250 Query: 257 N 257 + Sbjct: 251 D 251 >gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] Length = 253 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 7/178 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ S +++ Sbjct: 2 VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLYP 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWG 131 L AI D A+ R + + +P +A L R + + ++FGRE G Sbjct: 62 TLLSAIGDCRRSVASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGREDRG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 L+N+E+ L +++ +PSLN+S +V +++ + +S++ ++ P+ K Sbjct: 122 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMAR---LSTKLHIPSTADPSAK 176 >gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] Length = 256 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ + +++ Sbjct: 5 VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTAKLYP 64 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGRERWG 131 L AI D A+ R + + P EA L + Q + ++FGRE G Sbjct: 65 TLLSAIGDCRRSVASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGREDRG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L+N+E+ L +++ +PSLN+S +V +++ + Sbjct: 125 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHD 160 >gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2] gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 16/235 (6%) Query: 37 NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96 N L QL +V P D + ++++ +A ++D + + S L +A+A ++ TTAR Sbjct: 2 NMGLDQLVVVAPDDFDRTRAEKTATHSAASILDRMEICSTLSQALAPFEYVVGTTARLGG 61 Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 + V +P+ A+ + + V ++FG E GLTN EI +A+I+ P F SLN Sbjct: 62 Q-RLVESPRTVALRVAT-LCENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLN 118 Query: 157 ISQAVLLMVWECMENSIVSSEKNV---KEQNTP--ATKGELLSFLDYLEISLEERGYFRP 211 ++QAV+++ +E + V ++ + K+Q P AT EL L + L E GY P Sbjct: 119 LAQAVVIVCYELL--VAVEHQQGLPLEKKQVVPRLATVSELEIMYQRLSLVLAEIGYVNP 176 Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266 E L+ + R ++ E +++G++ + + +R +TEK Sbjct: 177 -ENPDFWLNRVRQFLSRIKIQAGETGIVKGVIDRIVAYGESRYQRG-----QTEK 225 >gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901] gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae T7901] Length = 233 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ILV+P N+G ARAM QL LV D E+A + A ++ S + + Sbjct: 4 FILVNPARPANVGAAARAMKTMGFKQLILVG-SDIHLDEEAHWVAHGAQDILTSATCYPD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L D + TTAR R + + L+P E L+++ SG++ G++FG E GL+N++ Sbjct: 63 LASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQ--SGRS-GLVFGCEASGLSNDQ 119 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +AL + P+ +PSLN+ QAV++ + Sbjct: 120 LALCDLYSYIPLATPYPSLNLGQAVMVYSY 149 >gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6] gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii GP-6] Length = 245 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 25/238 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G VARAM NF L LVNP A +S A V+ R FS Sbjct: 5 VVLVEPLYEGNVGSVARAMKNFGFHDLALVNPCKIEDYGCAMASHARD--VLQMSRSFST 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQN-VGIIFGRERW 130 L EA+ + + TT + + + L P L E++ + V ++ GRE Sbjct: 63 LAEALEGANLVVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGREDC 122 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNT 185 GL ++EI+L + I+S P + +P +N+S + ++ +E +S V + Sbjct: 123 GLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYELSGIGSNSSSSVQMARKETLNLL 182 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 G+LL+ + Y P K+ L L IF R EL E L GI+ Sbjct: 183 QERAGDLLADIAY------------PEHKEDYTLLMLRRIFGRAELTEREARALLGII 228 >gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304] gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 226 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 86/153 (56%), Gaps = 13/153 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+ ++ EN+G +AR N+ + +L L R +E++ ++ANA V+++ V +L Sbjct: 1 MLVELKIPENVGFIARVAKNYGIKRLCLYKCR---VTEESYHTAANAKDVLENAVVVEDL 57 Query: 78 KEAIADLHFIYATTARNRNNFK----SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +E + ++ I TT ++K +LAP++ V R V ++FGRE +GL Sbjct: 58 QEFLQRMNLIVGTTGIPGGDYKYLRKELLAPEDLPSVAKGR------VAVLFGREDYGLY 111 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 NEE+ + + ++ P + +P +N+S A ++++ Sbjct: 112 NEELEMCHVLVRVPTSEEYPVMNVSHAAAVILY 144 >gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I Length = 173 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 I P N+G ARA+ +L LV PR D +A + ++ A V++ V Sbjct: 14 IXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVLERAAVHD 73 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133 L+EA+A + +A T R R+ +EAA + + + V I+ G ER GLT Sbjct: 74 TLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 133 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 N +I L + I P NP + SLN++QA+ L WE Sbjct: 134 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWE 167 >gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] Length = 243 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 7/235 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V +L Sbjct: 1 MLVEPAGPLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDL 60 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERIFSGQNVGIIFGRERWGLT 133 AI D + R + + P++A SG + ++FGRE GL+ Sbjct: 61 LTAINDCRRTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLS 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGE 191 N E+ L ++ +PSLN+S AV +++ E + ++E E + PA Sbjct: 121 NSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSGTTETRCIEPPSPDPAAAKA 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 L + ++ L E G+ +M + + R + EEV LLRG+V L Sbjct: 181 LSACIEDASDLLLEAGFLLEHTAAARM-AKVRDLLQRATVRAEEVALLRGMVRQL 234 >gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] Length = 268 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 21/244 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADC------- 66 IIL NIG ARAM L+QL LV P +E S+ +AD Sbjct: 13 IILSRTSHPANIGSAARAMKTMGLSQLVLVAPNLMATPMTTEPPEFSAEHADTFRLPEES 72 Query: 67 ---------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 +++ ++ + L EA+ A T+R R + P+E L + Sbjct: 73 FILASGAVDILERAKIVATLPEALVGTTLSCALTSRRRELTAPLQTPRELTPNLLAAAQA 132 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GQ V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ +E Sbjct: 133 GQQVALVFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCYELFSQVNADMS 192 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + E++ AT ++ + +LE ++E +F +++M+ L+S+F R + E++ Sbjct: 193 HLIPERHL-ATADQVSGMVQHLEKAMEHLDFFHH-RNQERMIRRLHSLFNRADTTTEDID 250 Query: 238 LLRG 241 +LRG Sbjct: 251 ILRG 254 >gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] Length = 246 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ILV+P+ +N+GM+ARAM NF +LR+V P ++ D VI+ + + + Sbjct: 5 IVILVEPEKADNVGMIARAMKNFGFYELRVVRPMFESFDRAIAAAMRARD-VIERMEILT 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGL 132 L+EA + + TTAR S + + AI + + + S G++ GRE GL Sbjct: 64 TLEEARRGVDLMIGTTAR-----VSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 T EE++ + + + P + +P+LN++ A ++++E Sbjct: 119 TTEELSYCDIVATIPSSEDYPALNVANAAAIILYE 153 >gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] Length = 217 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 9/215 (4%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 L+Q+ LV+P+ ++ ++ +D + + ++ +L++AI D + ++AR+R Sbjct: 2 MGLSQMVLVDPQCEVDAQAIALAAGASDIALGA-QIVGSLQDAIEDCGLVVGSSARSRTL 60 Query: 98 FKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155 ++ P+E + G+ V ++FGRER GLTNEE+ L + P NP + SL Sbjct: 61 DWPMIEPRECG---EKFAIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSL 117 Query: 156 NISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213 N++ AV + +E + V+++ +EQ EL F +LE + + + + Sbjct: 118 NLAMAVQTLSYEVRVAHLQRVANQFPEQEQAEYPRHKELELFYQHLEKVITDTQFISK-D 176 Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K +++ L +F R +E+ LRGI+++++K Sbjct: 177 KPGLVMNKLRRMFSRARPESQEINTLRGILTSIEK 211 >gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1] gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 253 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 6/240 (2%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA 64 P + + P + +VD + N+G +ARAM NF +L LV+P G SE + Sbjct: 7 PTTRPAMSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAR 66 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGI 123 + ++ R S +++ H + T N + P L + + + + Sbjct: 67 EDILPEARELS-FDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTAL 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FGRER GLTN+E+A + + S P + +P +N+ Q+ + ++E + ++ ++ E+ Sbjct: 126 VFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVER 185 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + A + E+ F ++ L+ Y P EK+ K + L + R E+ + G++ Sbjct: 186 HR-ADEAEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLL 242 >gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486] gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM 11486] Length = 232 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + N+G+++R NF + +L LVNP ++A SA ++ V + Sbjct: 4 VVLVGIEGAYNLGVISRTCVNFEVDELYLVNPSAS--IKEALIYSAKGKSFLEKAVVVDS 61 Query: 77 LKEAIADLHFIYATTARNRN------------NFKSVLAPKEAAIVLNERIFSGQNVGII 124 L EA+ + AT+A+ + F S +AP+ + L + Sbjct: 62 LDEALKGVDASVATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLAL------------V 109 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 FGRE GLT EE++ ++ ++S P NP +P LN+SQAV + +WE Sbjct: 110 FGRESTGLTREELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWE 152 >gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 251 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 5/152 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L P+ N+G V RAM N + +LR+V + + E+ R + +A + + F Sbjct: 7 CIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAEFFE 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A AD TT R K+ +L P+E A + + ++FG ER GLT+ Sbjct: 67 TITQATADCPLSAGTTRRKGKKRKNMLLLPEEFA----RQAAAVPGAAVVFGNERTGLTD 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 EE+A ++ P + F SLN+S AV ++ + Sbjct: 123 EELAECTVGVTIPSHESFASLNLSHAVQIICY 154 >gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I] gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic archaeon RC-I] Length = 249 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G V RAM NF L LV P + S KA +S A ++ S + Sbjct: 11 VVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCELGNSAKAMASHAQD--LLASAAIVDT 68 Query: 77 LKEAIADLHFIYATTAR----NRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++EA+ + I TT + R + + +P+E +L ++ V ++FG+E G Sbjct: 69 VEEALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDK---QGTVALLFGKENHG 125 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L NE + ++S P + +P +N+S AV ++++E Sbjct: 126 LPNEILEKCGVVLSIPTSDDYPVMNLSHAVAVVLYE 161 >gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99] gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99] Length = 229 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V +LV+P N+G ARA+ QL LVN E + D + ++ V Sbjct: 4 VFVLVEPSRPANVGAAARAIKTMGFEQLILVNSNLHLDKEAHWLAHGATDILAQTL-VVD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + A + ATTAR R + L P E + +++ S + + ++FGRE GL+N Sbjct: 63 SVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRESSGLSNS 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192 E+ L + P+ +PSLN++QAV MV+ S SE N +K + A +G+L Sbjct: 123 ELELCDLFSYVPLINDYPSLNLAQAV--MVY-----SYALSEVNNRLKHKRVDAQEGQL 174 >gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 236 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68 ++L+ P+ EN+G VARAM NF D W + R + +A ++ Sbjct: 7 LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAGELL 57 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D R+ L EA+AD ++ T++R K L P E A ER +G+ I+FG E Sbjct: 58 DRPRLVRTLDEAVADCAWVVGTSSRAVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GLTN+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPARAPEAGAT 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215 EL + + L +L G+ E+ Sbjct: 176 DAELSAVEEALRAALRGGGFLAGPERH 202 >gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1] gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 241 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 6/231 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRV 73 P + +VD + N+G +ARAM NF +L LV+P G SE + + ++ R Sbjct: 4 PAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAREDILPEARE 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132 S +++ H + T N + P L + + + ++FGRER GL Sbjct: 64 LS-FDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRERVGL 122 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TN+E+A + + S P + +P +N+ Q+ + ++E + ++ ++ E++ A + E+ Sbjct: 123 TNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVERHR-ADEAEI 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 F ++ L+ Y P EK+ K + L + R E+ + G++ Sbjct: 182 EQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLL 230 >gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091] gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091] Length = 238 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+P+ NIG +AR M NF L +L L+NP A + +A ++ ++ L Sbjct: 6 VFVEPKTSGNIGFLARTMKNFGLKKLVLINP--CKLENDAYYQAMHARELVQDAMIYDTL 63 Query: 78 KEAIAD--LHFIYATT--ARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E I D + I TT A N K + + P E L + + N+ ++FGRE GL Sbjct: 64 EEFIEDKKITSIVGTTGTAGGSYNIKRIPITPDE----LGKTMHVNGNIALLFGREGDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 N+EI + +++ P + +P +NI+ A ++ +E +N Sbjct: 120 NNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKN 158 >gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg] gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str. Marburg] Length = 240 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ V+P+ N+G +ARAM NF L L L+NP ++A + +A +++ ++ Sbjct: 13 VVFVEPETPGNVGFLARAMKNFGLQNLILINP--CSLEDEAYYQAMHARDLVEDAIIYQT 70 Query: 77 LKEAIADLH--FIYATTARNRNNF---KSVLAPKEAAIVLN--ERIFSGQNVGIIFGRER 129 L E I +L F+ TT ++ + L P + A +N R F I+FGRE Sbjct: 71 LDEMIENLEPDFLVGTTGVPGGSYNVDRIPLRPSQLASAINPSSRTF------ILFGREG 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL+N E+ L + ++S P + +P +NI+ A ++ +E Sbjct: 125 DGLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYE 162 >gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 126 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 8/130 (6%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FG E GL+NE++ +N ++ P + + SLN+S AV ++ + N S +K + Sbjct: 1 MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAY----NLYTSKQKKIIYN 56 Query: 184 NTPAT----KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 NT + K +L F D+L +LE+ +FRP+EKK+ M+ + +IF + L + E+ L Sbjct: 57 NTDKSEIVGKSDLFKFYDFLIGNLEKTRFFRPIEKKEFMVKSIKNIFSQQPLTKRELKTL 116 Query: 240 RGIVSTLDKF 249 GI S+L K+ Sbjct: 117 MGIFSSLKKY 126 >gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 21/235 (8%) Query: 35 MWNFNLTQLRLVNPRDGW--PSEKARSSSANADC-------------VIDSVRVFSNLKE 79 M NF L++L +V P W P +A D V++ + ++L+ Sbjct: 1 MKNFGLSRLAIVAP-PSWAGPPRSGGPGTAQEDVLARARRLARRASDVLEGAEIHADLRG 59 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+ ++ TT+R + L P E A + R G+ V ++FG+ER GL++ E+ L Sbjct: 60 ALGPAVWVCGTTSREVEG-RPRLDPGELAEEVLRRSAHGE-VAVVFGQERRGLSDAELEL 117 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 A+ S P P + S+N++Q+V ++ +E V + + L + + L Sbjct: 118 CQAVCSIPTAPAYDSMNLAQSVAVLAYEIGRPRQVRAPAPAAAEPA--RHATLEALWERL 175 Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + L E GY P + + +L DL + R E + EV L+ V L++ R+ + Sbjct: 176 QALLGEAGYLNP-QNPEHILADLRRLLARAEPTQREVELVLAAVRALERKLRERA 229 >gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 277 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 41/273 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ R Sbjct: 5 FILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WPNVLRREETIQRASGALDVLENAR 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNERIFSGQN 120 + + L EA+ + + AT R+ +P+E A L E G Sbjct: 63 IVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGGV 122 Query: 121 VGI----------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 + +FG ER+G+ NE++ + +S P NP F SLN+ Sbjct: 123 APVPPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLG 182 Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218 A+ ++ +E ++ + PA ++ L + E +L + G+ P KK+ Sbjct: 183 AAIQVIAYEWRLALGGFPVRDAAPASAPADAAQVAGMLAHWERALVDIGFLDPA-APKKL 241 Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + L +F R + EE+ +LRG+ + + ++ Sbjct: 242 MPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAQ 274 >gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii] gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii] Length = 324 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 22/171 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDSV 71 ++LV P+ NIG VARA NF L +V PR GW E + A D V+D Sbjct: 28 VVLVAPKHEANIGAVARAAANFECLNLYIVAPRCDGAAAGWTGEARKV--ACGDSVLDRA 85 Query: 72 RVFSNLKEAIAD----LHFIYATTARNRNN-----------FKSVLAPKEAAIVLNERIF 116 V L++A+AD + F T A R + F L P A+ + Sbjct: 86 VVVDTLEQALADTSSSIGFTRRTGAARRTHASLGHLLAEFPFALPLQPPPVAVPTSAAAA 145 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FGRE GLT E+ L + + P + PS+N+S AV ++ E Sbjct: 146 GPCATALVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLSHAVAAVLAE 196 >gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] Length = 275 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 1/148 (0%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 +P+ N+G +ARAM NF + LRLV+P P +A + +A + + L+E Sbjct: 37 EPETPGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDVLPNATETTLEEV 96 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIAL 139 + + H + T + ++ + V P + + + + + S + ++FGRE GL NEE+A+ Sbjct: 97 VEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELAM 156 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + P + +P LN+ QA L+++E Sbjct: 157 LDEVCCIPADDRYPVLNLGQAATLLMYE 184 >gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei DM98] Length = 192 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 LAP+ A +++ +G ++ ++FG ER GL+NE + +AI P NP + SLN++QAV Sbjct: 8 LAPRAAVASALQQVRTG-DIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAV 66 Query: 162 LLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218 ++ +E + E V T A E+ +LE +L + P KK+ Sbjct: 67 QVLAYELRVALLEDDEAAVPPDAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKL 125 Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L +F R L REEV ++RGI + Sbjct: 126 MPRLRRLFARTGLEREEVNIVRGIAKHI 153 >gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 270 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 28/218 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--------SSSANADCV 67 ++LV + NIG ARAM +F LR+VN P E A+ S+ A V Sbjct: 14 TVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDY-AAPFEAAQLEDSQQNVKSAVGAASV 72 Query: 68 IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAA-IVLNE-RIFSG----QN 120 + R +S+L EAIAD I TTA R+ + V+A ++AA +L + R + Q Sbjct: 73 MAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTLTAADHPQQ 132 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++FG E+ GLTNE+++ + + + P+ S+N+ Q+V + ++E S Sbjct: 133 VALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTREGFEGS 192 Query: 177 EK--NVKEQNTPATKGELLS--FLDYLEISLEERGYFR 210 ++ + E A E L+ LD L + GY R Sbjct: 193 KELPVLHEATATAEDRERLTQLLLDVLHAT----GYSR 226 >gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine microorganism HF4000_APKG7N23] Length = 209 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 35 MWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT 90 M NF + L LV DG+ ARS S +++++ F L+EA+AD AT Sbjct: 1 MVNFGIDDLALVKGCEIDDDGY----ARSKSGKP--ILENLSRFDTLEEALADCDVAIAT 54 Query: 91 TA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + ++ F++ + KE ++ ER + +IFGRE +GL E+AL I+ Sbjct: 55 SGIKPEGDKRWFRAPKSIKELPDLIKER----EKPALIFGRENYGLYRGELALCEVTITI 110 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206 P NP FP LN+S AV ++++E + + KN K++ + + E +D + LEE Sbjct: 111 PTNPKFPILNLSHAVGIVLYEIYRD---GNHKNPKKRKAVSNE-EFERLVDRIMDLLEET 166 Query: 207 GYFR 210 Y R Sbjct: 167 SYPR 170 >gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 252 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 13/219 (5%) Query: 1 MTPYAPQL-----QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M P+ P L N ++LV + NIG ARAM NF ++L +V P D Sbjct: 1 MPPFGPALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYD-VAFR 59 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +ARS+ A ++ F ++ A+AD + TT+ + + E L + Sbjct: 60 EARSAVGAAP-LLQKAEEFPSVAAAVADCRLVVGTTSVGHRELQHPIRRLEYGARLMLKG 118 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SI 173 V ++FG E++GL+NE+++ + ++ P S+N+ QAV L ++E + + Sbjct: 119 LPAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELARDPKAA 178 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212 ++S + ++ N GEL L L GY PV Sbjct: 179 LASPEKIRSANA----GELEQITTRLLEVLNRSGYVNPV 213 >gi|289804368|ref|ZP_06534997.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 125 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134 L EA+A + T+AR+R +L P+E + + + N V ++FGRER GLTN Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122 Query: 135 EEI 137 +E+ Sbjct: 123 DEL 125 >gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 234 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + V+P+ N+G AR + NF + ++ LVNP+ + + A S +A +I++ + + Sbjct: 7 VAFVEPRYQINLGYEARVLKNFEIRKMYLVNPKCKFNGKNAIKYSKHAHDLIENAAILKD 66 Query: 77 LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + F+ TTA ++R F +V+ E + + S +N+ ++ GR+ GL Sbjct: 67 L-NGVTRNSFVVGTTALWRKSRKYFDNVMTLPEFEEYIRGK--SIENMTLLIGRDNTGLN 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 +EE+ N+I+ P + +P+LNIS A+ ++++ S + + E ++ ++ Sbjct: 124 SEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQKPSSWPQEIGELYADSSDLRMI 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 L S++ Y R E KK +++ +R ++E+ L S Sbjct: 184 KSL--FGASVDSNPYIRKKETVKKAFENM---LVRANPTKKEINALTAAFS 229 >gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] Length = 237 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 19/231 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 +ILV + N+G + R NF++ +L LV P+ S++ R +AN IDS V+++ Sbjct: 4 VILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVKIY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRER 129 NL +A+ + T++ + ++ AI L E F+ ++ ++FGRE Sbjct: 64 ENLDDALRGIGISGCTSSVIDVDGGDIV---RKAIELEE--FANIASKYSSIAVVFGRES 118 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLT EEI+ + ++ NP +P LN+S AV + ++ + V + ++ ++ PA + Sbjct: 119 VGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYK---VLRKHSLFDRIEPAQE 175 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI-RPELMREEVFLL 239 EL Y++ E EK+++ ++ FI R L R EV LL Sbjct: 176 NELRILEKYID---EIVNIVASDEKQRESFSLVFKRFIRRTTLSRAEVGLL 223 >gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 257 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 9/155 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+PQ G NIG V RAM L++L + R + ++ R+ + +A V ++ Sbjct: 12 MVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLALHAADVWENCVWE 71 Query: 75 SNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131 +L+ A+A + + AT R + S + P + L +RI S V I+FGRE G Sbjct: 72 QSLESALATSILTVGATRRRGKYRKFSFINPSQ----LADRISSTPAGPVSIVFGREANG 127 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 LT++E+ + +++ P + FPSLN++QAV ++ + Sbjct: 128 LTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAY 162 >gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] Length = 290 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 5/154 (3%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIADL 84 N+G +ARAM NF L+ L+LV+P + +A + +A D + ++ V E +A+ Sbjct: 51 NVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEV--TFDEIVANY 108 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143 H + T ++ P + + L E + + I+FGRE GL NEE++ + + Sbjct: 109 HTVGTTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLDEV 168 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 S P + +P LN+ QA ++++E + ++ ++ Sbjct: 169 CSIPADDDYPVLNLGQAATVLLYELRDLTVDETQ 202 >gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19] gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19] Length = 234 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P+ NIG VAR M NF + +L LV PR E A + + +A ++++ + + Sbjct: 5 VVLVEPKYDGNIGHVARVMKNFGVKELFLVRPRSEL-GEVAIARAMHALDLLENAVIVNT 63 Query: 77 LKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EAI D+ ATTA + ++ + P E + E + + ++FG E GL Sbjct: 64 LEEAIEDVEAAIATTAVLASTPARNPMMPWE----VREAFSDYEKIAVVFGPEDRGLRTW 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E+ L +A + P + + S+N+S +V ++++E Sbjct: 120 EVELCDATLHIPTSEEYRSMNLSHSVAVVLYE 151 >gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE] gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE] Length = 235 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 28/249 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74 ++L++P N+G V R+M NF + LV P D + A++ +++A ++ + R+ Sbjct: 6 VVLIEPLYEGNVGSVCRSMKNFGFADIVLVKPCRLDNF----AKAMASHAQDLLATARIV 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLA-----PKEAAIVLNERIFSGQNVGIIFGRER 129 EA+ + ATT + + S + PKE +L ++ SG +IFGRE Sbjct: 62 DTFDEALEGADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDK--SG-TAALIFGRED 118 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL NE + + + P + +P +N++QAV + ++E K N Sbjct: 119 AGLPNEIVERCDIVAYIPTSKDYPIMNLAQAVSIFLYEL---------SGFKGGNVALAD 169 Query: 190 GELLSFLDYLEIS--LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E + L Y S L++ Y P KK K + L I+ R L R E + + G++ + Sbjct: 170 REDVDRL-YENYSNLLDDINY--PEHKKDKTMMMLRRIYGRAMLNRREYYTMMGVLHEIG 226 Query: 248 KFSRQSSRR 256 ++ +R Sbjct: 227 LALERAKKR 235 >gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299] gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299] Length = 506 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 80/230 (34%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------RDGWPSEKARSS--- 60 +L PQ +N+G VAR M NF + LR+ +P D P++ A SS Sbjct: 81 CFVLCGPQGPQNVGSVARVMQNFGIYDLRITDPGPFVLAGGGTRDEDATPADGASSSGGI 140 Query: 61 ------------------------------------------------SANADCVIDSVR 72 + AD ++ + Sbjct: 141 NSGAALGPDGLGSDLPEALRPTRIDSGGNPADDPASPAPPLCDEAYRFACAADWLLADAK 200 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 EAI+D F+ ATTAR R N V A + AA +L + G+ V ++FG ER GL Sbjct: 201 RCDTALEAISDCTFVMATTARPRGNVPLVTA-RVAAEMLAKEAKRGK-VAVLFGNERTGL 258 Query: 133 TNEEIALSNAIISFP--------------VNPLFP-SLNISQAVLLMVWE 167 TNEE+A ++A ++ P P SLN+SQAV ++ +E Sbjct: 259 TNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPTSLNLSQAVGVLAYE 308 >gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLH 85 NIG VARAM + LR+VN +P A + SA +A V+ + +++ EA+AD Sbjct: 29 NIGAVARAMHDLGFAHLRIVN---DFPVPFAAAKSAVDASSVLAAATEPASVAEAVADCT 85 Query: 86 FIYATTARNRNNFKSVLAP-KEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + TTA + L +AA + + R + ++FG E+ GL+NEE++ +A Sbjct: 86 LVLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEELSHCHA 145 Query: 143 IISFPVNPLFP----SLNISQAVLLMVWE 167 +++ P+N L S+N+ QA + +++ Sbjct: 146 LLTIPMNTLTADHHLSMNLGQAAAVCLYQ 174 >gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 269 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 24/264 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI------ 68 ++L PQ +N+G AR M NF L++L +V P G P + D V+ Sbjct: 8 LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVLARARRM 67 Query: 69 --------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 D + +L+ AI ++ TT+R + L P+ A L R G+ Sbjct: 68 ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSADGE- 125 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPPGAAPA 185 Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + + PA + + + L GY P + + +L D + R + + E Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244 Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259 V LL G + +LD+ R R + Sbjct: 245 VELLLGALRSLDRVLRLPPRGDGT 268 >gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] Length = 332 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKE 79 +P+ NIG +ARAM NF LT+L LV+P +A + +A + V+ + + S Sbjct: 14 EPETPGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTVS-FDA 72 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIA 138 + H I T ++ V P + +++ + + + ++FGRE GLTN+E+ Sbjct: 73 VVNKYHTIGTTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELT 132 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + S P N +P LN+ QA ++++E Sbjct: 133 SLDEVCSIPANESYPVLNLGQAATVLLYE 161 >gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545] Length = 464 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 53/200 (26%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-------------------------RD 50 ++L PQ +NIG +AR + NF + LR+V P R Sbjct: 93 CVVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKATHPAETRA 152 Query: 51 GWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 P +E+A + +AD ++ R + EA++D F+ ATTAR R N +L + A Sbjct: 153 TAPLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVFVAATTARARENLP-ILDARSAV- 210 Query: 110 VLNERI---FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF-------------- 152 ER+ S V I+FG E GLTNEE++L+N + P Sbjct: 211 ---ERVKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRGEKRYT 267 Query: 153 -----PSLNISQAVLLMVWE 167 SLN+S AV ++ +E Sbjct: 268 GGAGPTSLNLSHAVGVVAYE 287 >gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L + +N+G VAR M NF +L L +P + A + + V++ + V Sbjct: 8 TVVLHQTRSPDNLGAVARVMANFGFFRLILSDPAT-YAFRGAERLAVKGERVLERMAVAR 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+++ + TT+R + + L P++A L E G+ V ++ G E+ GL++ Sbjct: 67 ELPEALSECVYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARGR-VALVLGGEQRGLSDA 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E+A+ ++ P + + PS+N++QA ++++ C Sbjct: 126 ELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLC 158 >gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 242 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+L P+ NIG RAM N + +LR+V ++ +K + +A + D+ FS Sbjct: 7 VIVLSRPEEPRNIGAACRAMANNGIHKLRIVGKKEEIDLDKVHVLAIHASYIFDNAEYFS 66 Query: 76 NLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERW 130 ++ EA +D + T R + +L P+E A N RI G V ++FG ER Sbjct: 67 SITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTAN-RISGTEKKGGKVAVVFGNERT 125 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL + EI ++ P + F SLN+S AV +M + +EKN K TP Sbjct: 126 GLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFR----YNEKN-KIGYTPIDSK 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKK 215 L + + +L++ G+F +K Sbjct: 181 RLKKTVTTIADNLQKIGFFSVTGRK 205 >gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein From Neisseria Gonorrhoeae Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 22/204 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLV----------------NPRD----GWPSEK 56 IIL NIG ARA L +L +V NP D P E Sbjct: 20 IILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPVFNPDDVQSFALPEES 79 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +S AD V+ + + + L EA+AD A T+R R + P++ L + Sbjct: 80 FILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAAN 138 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ V ++FG E +GL+ EE+ N + + NP + SLN++QAV ++ +E + S Sbjct: 139 RGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQVVCYEIFSQTD-SP 197 Query: 177 EKNVKEQNTPATKGELLSFLDYLE 200 ++++++ AT ++ L + E Sbjct: 198 XTHLQQEDHAATHEQIKGXLAHXE 221 >gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M] gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M] Length = 232 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 16/165 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSV--R 72 ++ V+P+ +NIG +AR NFN L L+NP+ D + EKA + +A ++ Sbjct: 4 IVFFVEPEKVDNIGAMARVCKNFN-ADLYLINPKVDNY--EKAFVVAKHAQDLLQKAIEN 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNV--GIIFGR 127 +++ EA + TT + N + +S L P E A ER F+ ++ GI GR Sbjct: 61 KLNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELA----ER-FANSDIKLGIFIGR 115 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GLTNEE++ + I++ P N +P LN + A ++++E ++S Sbjct: 116 ESIGLTNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKHS 160 >gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 269 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 24/264 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA----------- 64 ++L PQ +N+G AR M NF L++L +V P G P + + A Sbjct: 8 LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVLARARRM 67 Query: 65 ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++D + +L+ AI ++ TT+R + L P+ A L R G+ Sbjct: 68 ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSEQGE- 125 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + + Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPAGAAPA 185 Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + + PA + + + L GY P + + +L D + R + + E Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244 Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259 V LL G + +L++ R R + Sbjct: 245 VELLLGALRSLERALRLPPRGDGT 268 >gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] Length = 324 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 53/286 (18%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +LV P L NIG RA+ + L +V PRD E A + + A +V S Sbjct: 40 VLVSPSLSANIGSAVRALTTMGIPDLMVVAPRDAAFREDAGALALAAGAEARLAQVGSRP 99 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLT 133 +L A+AD A +A R P + + +GQ V +FG ER GL Sbjct: 100 SLDAALADCQLAVAVSAEGREFGPPPAFPGPLCAEVLGMLSAGQVQRVAFVFGTERTGLG 159 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-------------------------- 167 E+A ++ P + + SLN++QAV ++ + Sbjct: 160 TAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRRAVLEREAARVMTRGESASGGAPS 219 Query: 168 --------------CMENSIVSSEKNVKEQNTPATK-GELLSFLD-------YLEISLEE 205 C S V+ + + GE L+ L + E SL Sbjct: 220 AELARAVDGYPTDVCGREDAASPAAGVRHDGSRGLRSGERLADLGAVEGLVRHAESSLAA 279 Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 G P + ++++ L +F R L EV LLRGI +D+ ++ Sbjct: 280 LGTLDPA-RPRRLMARLRHLFGRTSLTAAEVDLLRGICRDIDRRTK 324 >gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 230 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V +LV+P N+G ARA+ QL LVN E A + A +++ V Sbjct: 4 VFVLVEPTRAANVGAAARAIKTMGFEQLILVNSSLHLEKE-AHWVAHGATDILERTLVVD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + A + ATTAR R + L P E L E+ S + + ++FGRE GL+N Sbjct: 63 SVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSDSVKKIALLFGRESSGLSNS 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L + P+ +PSLN++QAV++ + E + +K ++ Q +G+L + Sbjct: 123 ELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQKQIQPQ-----EGQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL 222 + ++ L+E G V+ + +LD + Sbjct: 178 KNRTQLLLQELGTQDDVKLSRWLLDGM 204 >gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein [Escherichia coli E128010] Length = 148 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 74/131 (56%), Gaps = 4/131 (3%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--K 178 V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E + + E + Sbjct: 11 VALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGE 70 Query: 179 NVKEQNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 V+ + TP +L F +LE +L G+ R ++++ L +F R +E+ Sbjct: 71 QVEHEETPYPLVDDLERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELN 129 Query: 238 LLRGIVSTLDK 248 +LRGI++++++ Sbjct: 130 ILRGILASIEQ 140 >gi|258619944|ref|ZP_05714984.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] gi|258587677|gb|EEW12386.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] Length = 135 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 8/128 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ +++ ++F Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQIDAQAIALAAGASEIALNA-QIFPT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133 L+ A+AD + T+AR+R +L P++ E++ S V ++FGRER GLT Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQC----GEKLIAEASQHTVAMVFGRERTGLT 121 Query: 134 NEEIALSN 141 N+E+ L + Sbjct: 122 NDELQLCH 129 >gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis Bt4] Length = 174 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 7 DIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPA 66 Query: 180 VKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 67 TPPDAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEV 125 Query: 237 FLLRGIVSTL 246 ++RGI + Sbjct: 126 NIVRGIAKHI 135 >gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15] gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15] Length = 245 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 79/143 (55%), Gaps = 7/143 (4%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R NF + +L LV+P +E R ++ +D + V +LKEA+ D+ Sbjct: 17 NLGYIFRLSENFEVDELYLVSP-TASVAESLRWAAKASDMAWKAT-VVGSLKEALRDVEL 74 Query: 87 IYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 T+ + R+ +S ++P++AA ++ I V ++ GRE GLT +E+A + + Sbjct: 75 SVCTSDESSARDLLRSPVSPEQAAELM---IARKGTVALVVGRESVGLTRDELAQCDLLC 131 Query: 145 SFPVNPLFPSLNISQAVLLMVWE 167 + P +P + +LN+S A ++++E Sbjct: 132 TIPASPKYTALNVSNATAVLLYE 154 >gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica HM-1:IMSS] gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica HM-1:IMSS] Length = 350 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 1 MTPYAPQLQNSAK-GPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 +TP ++Q+ G + +ILV P +NIG V R N+ + +L +VNP E Sbjct: 79 ITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLCEIGEES 138 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNE 113 + S + + I++ + +L+E D + TAR + N + ++ +EA +L+ Sbjct: 139 IKVSR-HGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLS- 196 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 G VG++FG E GL EE + + + +P LN+S AV Sbjct: 197 -TMKG-CVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAV 242 >gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri] gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri] Length = 384 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 49/186 (26%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPR-----DGWPSEKAR 58 P+L+N +L PQ N+G ARAM NF + +L+L V P D + R Sbjct: 53 PELENV----RFVLCAPQGAANVGACARAMQNFGVYELKLCEVGPNVLERDDAGETAATR 108 Query: 59 SSSANADCVID------------------------------------SVRVFSNLKEAIA 82 + ++A+ ++D ++++ A+A Sbjct: 109 GTESDAERILDEASEGEGKTPERAANQTLPLSAEALRYACAADWMLEDAERCADVEAALA 168 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F+ ATTAR R ++ +EAA + E G+ V ++FG ER GLTNEE+A ++A Sbjct: 169 GCTFVLATTARPRTGTP-LMTAREAAKKVAEEAKRGK-VAVLFGNERTGLTNEELAWASA 226 Query: 143 IISFPV 148 + P Sbjct: 227 AVVVPT 232 >gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] Length = 235 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 24/122 (19%) Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------- 110 A ++D + ++K AI D I+A +AR+R + VL P AA V Sbjct: 2 AGILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNT 61 Query: 111 -------LNERIFSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 +N+ N + I+FGRE GLTNEE++L++ I P N +P LN++ Sbjct: 62 LATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVAS 121 Query: 160 AV 161 A+ Sbjct: 122 AI 123 >gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760] gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760] Length = 350 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%) Query: 1 MTPYAPQLQNSAK-GPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 +TP ++Q+ G + ++LV P +NIG V R N+ + +L +VNP E Sbjct: 79 ITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLCKIGEES 138 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNE 113 + S + + I+ + ++L+E D + TAR + N + ++ +EA +L+ Sbjct: 139 IKVSR-HGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLS- 196 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G +G++FG E GL EE + + + +P LN+S AV + M + Sbjct: 197 -TMKG-CLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGI-ALNYMHMRL 253 Query: 174 VSSEKNVKE---QNTPATKGELL-SFLDYLEISLEERGYFRPVEKKKKML 219 V E +N KGELL + + L + E+ VE KK+L Sbjct: 254 RDGGDLVPEGCKENIAKEKGELLEQWKEILHSVMNEQREIGAVESMKKLL 303 >gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 344 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 15/146 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNL-TQLRLVNPR--------DGWPS----EKARSSSANA 64 +L P+ N+G AR + NF+L + LR+V P DG + E A + +A Sbjct: 4 VLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDDDGASAPRLHEDAYKFAVHA 63 Query: 65 DCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++D ++ EA+A+ + ATTAR R N +L A + + I G I Sbjct: 64 KWMLDDCCARGESVLEAVAEASLVVATTARPRENLP-LLTLGAACEKMRDEIARGGKCAI 122 Query: 124 IFGRERWGLTNEEIALSNAIISFPVN 149 +FG ER GLTNEE+ L+ +S P + Sbjct: 123 LFGNERTGLTNEELELAEFGVSIPTS 148 >gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M NF +L L +P + A + + V++ + V L EA+++ + TT+R Sbjct: 1 MANFGFFRLILSDPAT-YAFRGAERLAVKGERVLERMAVARELPEALSECVYAVGTTSRT 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 + + L P++A L E G+ V ++ G E+ GL++ E+A+ ++ P + + PS Sbjct: 60 QLKGRIPLTPEQAVRRLAEESARGR-VALVLGGEQRGLSDAELAVCADVLVIPTSEVQPS 118 Query: 155 LNISQAVLLMVWEC 168 +N++QA ++++ C Sbjct: 119 MNLAQAAGVLLYLC 132 >gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] Length = 666 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----DGWPSEKARSSSANA-DCVID- 69 V +L P+ N+G +RAM NF LRLV+PR G +AR +A D V++ Sbjct: 50 VFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMFAARGLDAVLER 109 Query: 70 --SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +++ A D + AT R R N V++ +E A + E + G V ++FG Sbjct: 110 DGRTTTTTSVSAATMDATLVVATCPRPRENVP-VVSLREGARRVAEEVARGGRVAVLFGT 168 Query: 128 ERWGLTNEEIALSNAIISFP 147 E+ GL+N+E+ + + P Sbjct: 169 EKSGLSNDEMEHAQFAVCVP 188 >gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 267 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 17/240 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L N+ +GPV N+G ++RAM N QLR P + R + + Sbjct: 21 LLNNIEGPV----------NLGFISRAMANTGFAQLRFCGPVSADDPDVLRYAVHSGHLR 70 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + RV ++ + + + R + + + ++ + + + VG++FG Sbjct: 71 ENFTRV-EDIGGLCRAMDVVIGMSPRQPWSDGCDITLDQLPALVGQHTAAHKRVGLLFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNT 185 E GL N ++ ++ P + + S+N++QAVL+++WE + S V + ++ Sbjct: 130 EAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGASGVGIDPSMPAA-A 188 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PA+ E FL+ L LE Y P + + +L + + + E+ LL G++ T Sbjct: 189 PASMRE--QFLEKLRQYLELIDYLDP-QNPDHLWQELAIMIRKRDWSERELTLLMGLIHT 245 >gi|213580756|ref|ZP_03362582.1| tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 115 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + ++ Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 L EA+A + T+AR+R +L P+E L +R SG+ G Sbjct: 66 LDEALAGCSLVVGTSARSRTLPWPMLDPRECG--LKKRSGSGKYAGC 110 >gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L + N+G +ARAM N + L + E A + +A ++++ Sbjct: 2 KGVNVLLSRLEGPVNLGFIARAMANTGFSSLSYTGTVP-YNHEDALKFAVHASDILENAY 60 Query: 73 VFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +E I+ + T R+ NN L +E ++E + +G VG++FG E Sbjct: 61 HPETFEELISTSDVVIGFTPRSPFSTNN----LPYEELKDFVSETVSTGLKVGLLFGNEA 116 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL N+E++ +S P + + S+N++QAVL+ +W+ Sbjct: 117 SGLNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQ 154 >gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] Length = 232 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%) Query: 5 APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A L N A G V ++ P++ N+G AR+ F LRLV P S A S++ Sbjct: 49 ARALVNPALGDVAVVFCSPKIASNVGAFARSCAAFECVDLRLVTPACDAGSRAALSAAKG 108 Query: 64 ADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ S F L EA+ A + + + + + F G + Sbjct: 109 AQGLVRVASSSGTFDTLVEALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADA--FPGGD 166 Query: 121 V-----GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++FG E GLT EEIA +A+ + P+ L SL+++ A ++ + Sbjct: 167 VEGGKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIAL 216 >gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 24/157 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 DPQ N+ V R F + +L ++ P P ++ + S NAD +D VR +S+ Sbjct: 52 FCDPQ---NVNAVLRTCEAFGIQELHVIEGPMK--PYDRNKKISQNADKWVD-VRRWSST 105 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E +A L IYAT E A L+ F+G+ V ++FG E G++ Sbjct: 106 GECLAHLKAEGFAIYATHL------------GEGARTLDALSFAGK-VALVFGNEHRGVS 152 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +E +ALS+A+ P++ SLN+S A + + + +E Sbjct: 153 DEAVALSDAVYVIPMHGFVQSLNVSVAAAISIAKAVE 189 >gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 445 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 58/206 (28%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVN---------PRDGWPS-------------- 54 ++ PQ N+G AR M NF + L LV+ R G + Sbjct: 68 VMCAPQGPANVGAAARVMQNFGIYDLALVDVGPFVLTTTTRSGDATREISDEASEGEGRA 127 Query: 55 ------------------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96 E+A + AD ++ + +EA+ F+ ATTAR R+ Sbjct: 128 PERASEVLGSEARTTPLCEEAMRYACAADWLLADAERCDDAEEALRGCSFVLATTARPRS 187 Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF---- 152 ++ +EAA + E G+ V ++FG ER GLTN+E++ ++A ++ P Sbjct: 188 G-TPLMTAREAAERVREEAKRGK-VAVLFGNERTGLTNDELSWAHAAVAIPTAGAGKICR 245 Query: 153 -----------PSLNISQAVLLMVWE 167 SLN+S AV ++ +E Sbjct: 246 KSLKYTGGTGPTSLNLSHAVGILAYE 271 >gi|119470463|ref|ZP_01613191.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonadales bacterium TW-7] gi|119446388|gb|EAW27664.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonadales bacterium TW-7] Length = 118 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ NIG ARAM L++L LV+P S A + SA A V+ + + Sbjct: 8 VVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALSAGASDVLGNAVIVDK 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L++AIAD T+AR+R ++ P+E L +G V ++FGRE Sbjct: 67 LEDAIADCALTIGTSARSRTLSWPMVEPRECGEKLVAEAENGP-VALVFGRE 117 >gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] Length = 338 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%) Query: 28 IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLH 85 G+ R +W LV+P + S++AR + N A +++ V V + EA+ + Sbjct: 45 CGIECRHVW--------LVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECL 96 Query: 86 FIYATTARNRNN--FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T R+ + V PK GQ + ++FGRE GLTNEE+ Sbjct: 97 MAIGFTRRDGRDRVVNEVPYPKLCIPA------KGQAIALVFGREDDGLTNEELLYCTHT 150 Query: 144 ISFPVNPLFPSLNISQAVLLMV 165 P SLN+S AV L + Sbjct: 151 CRIPTTKWEGSLNVSHAVALAL 172 >gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] Length = 338 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 42 QLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN-- 97 Q+ LV+P + S++AR + N A +++ V V + EA+ + T R+ + Sbjct: 51 QVWLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRV 110 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 V PK GQ + ++FGRE GLTNEE+ P SLN+ Sbjct: 111 VNEVPYPKLCIPA------KGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNV 164 Query: 158 SQAVLLMV 165 S AV L + Sbjct: 165 SHAVALAL 172 >gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens] Length = 287 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 21/151 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVF 74 ++LV PQ N+G V NP+ + +A++ +AN + ++ +RV Sbjct: 29 VVLVSPQHAGNVGSV---------------NPQCDFRGVEAQTMAANVTSRSKLEHIRVT 73 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+ D T R+ + + A + + N+ I+FGRE GLTN Sbjct: 74 DTLPEALKDCSMAVGFT--RRSGILRIPDTRLANLCIPP--LDSLNLAIVFGREDRGLTN 129 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 EE+ + S P SLN+S AV +++ Sbjct: 130 EELMYCTHVCSIPSIQSAGSLNLSHAVAVVL 160 >gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis] Length = 302 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 39/185 (21%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ ++G VAR++ F LR+V P + +R+ S A ++ + Sbjct: 81 CVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSKGAQFLLWQAQRHG 140 Query: 76 NLKEAIADLHFIYATT---ARNRNNFKS------------VLAPKE---AAIVLNERIFS 117 L+ A+A + F A T A + ++S +L+P AA ++ Sbjct: 141 TLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAPQIVALLSPSHLEPAAATKHDGNAG 200 Query: 118 G---------------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 G + + ++FGRE GLT E+ + +A +S P+ L S++ Sbjct: 201 GSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQESMS 260 Query: 157 ISQAV 161 +S AV Sbjct: 261 LSHAV 265 >gi|323159255|gb|EFZ45242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein [Escherichia coli E128010] Length = 84 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + + Sbjct: 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65 Query: 77 LKEAIADLHFIYATTARNR 95 L EA+A + T+AR+R Sbjct: 66 LDEALAGCSLVVGTSARSR 84 >gi|237806517|ref|ZP_04593221.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027630|gb|EGI07685.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 76 Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG ARAM N L++L LV PR +PS A + ++ A ++++ +V + L+EA+ Sbjct: 6 NIGGAARAMKNMGLSRLVLVEPRI-FPSPDADARASGATDILEAAQVVATLEEALVGCRL 64 Query: 87 IYATTARNRN 96 + T+AR+R+ Sbjct: 65 VLGTSARDRS 74 >gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 154 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ ++E + F YATT N+ + + I + F ++FG+E GL Sbjct: 63 SFAEVQEKYQEGRFFYATTKANQ---------RYSDIAFQDGDF------LVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A ++ I P++ SLN+S + ++V+E + Sbjct: 108 PPELLAANADTCIKMPMSDKVRSLNLSNSAAIIVYEAL 145 >gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] Length = 191 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R + + VNP G P+ S ++ + RV +++EAI+ L Sbjct: 31 HNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPSIQEAISFLK 87 Query: 86 ----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +YAT R + +F+ V + AI+L G E+WG++ E +ALS Sbjct: 88 EKGFRVYATALREDARDFREVDYTQPTAILL--------------GAEKWGVSEETLALS 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + I P+ + SLN+S A ++++E + Sbjct: 134 HGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 166 >gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 DPQ N+ V R F + L + P P ++ + S NAD +D VR +S+ Sbjct: 35 FCDPQ---NVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E +A L IYAT R+ + L+ F+G+ V ++FG E+ G++ Sbjct: 89 AECLAHLRSEGFAIYATHLGERSTPMAGLS------------FAGK-VALVFGNEQRGVS 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E +AL++A + P+ SLN+S A + + +E V ++ Sbjct: 136 EEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181 >gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 DPQ N+ V R F + L V P P ++ + S NAD +D VR +S+ Sbjct: 35 FCDPQ---NVNAVLRTCEAFGIQTLHAVEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E +A L IYAT R+ + L+ F+G+ V ++FG E+ G++ Sbjct: 89 AECLAHLRSEGFAIYATHLGERSTPMAGLS------------FAGK-VALVFGNEQRGVS 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E +A+++A + P+ SLN+S A + + +E V ++ Sbjct: 136 EEALAVADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181 >gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] gi|48425869|pdb|1V2X|A Chain A, Trmh gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus] gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] Length = 194 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R + + VNP G P+ S ++ + RV +L EA L Sbjct: 34 HNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPDLHEAFRFLK 90 Query: 86 ----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +YAT R + +F+ V K A+ +FG E+WG++ E +AL+ Sbjct: 91 ERGFTVYATALREDARDFREVDYTKPTAV--------------LFGAEKWGVSEEALALA 136 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + I P+ + SLN+S A ++++E + Sbjct: 137 DGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 169 >gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 225 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 DPQ N+ V R F + L + P P ++ + S NAD +D VR +S+ Sbjct: 35 FCDPQ---NVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E +A L +YAT R+ + L+ F+G+ V ++FG E+ G++ Sbjct: 89 TECLAHLRAEGFAVYATHLGERSRPMAGLS------------FAGK-VALVFGNEQRGVS 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E +AL++A + P+ SLN+S A + + +E V ++ Sbjct: 136 EEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181 >gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus hydrogenoformans Z-2901] Length = 153 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G +AR T L LV P G+ +E A D D VRV Sbjct: 4 IVLVEPEIPYNTGNIARTCAATGST-LHLVKPL-GFSTEDKYLKRAGLD-YWDKVRVIYH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E + F Y +T R + P + ++FG+E G Sbjct: 61 ENFQELREKYPEGRFFYLSTKGKRYYHEVSYKPGDF---------------LVFGKETQG 105 Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169 L +E+ +N +F P+ P SLN+S V ++V+E + Sbjct: 106 LP-QELLEANKEFTFRIPMLPQIRSLNLSNTVAIVVYEAL 144 >gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] Length = 223 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 15/166 (9%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+++++D NIG V R F + ++ L P + ++ A+ Sbjct: 59 EFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAE 118 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIF-SGQNVG 122 +D + F N ++A+ DLH ++ + VLA + E + +L++ I + Sbjct: 119 FTVDW-KYFKNTQDAVNDLH---------KDGY-VVLAIEQCEGSTMLDDLILEKDKKYA 167 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+FG E G+ E + + I P SLN+S +++WEC Sbjct: 168 IVFGNEVKGVQQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWEC 213 >gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2] Length = 243 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 11/90 (12%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 IIFG+ER+G T+E IA+++ I P+ + SLN+S A L+++E ++ +V Sbjct: 113 TAIIFGQERYGATDEAIAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQRELAGMYDV 172 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFR 210 ++ P + + L F ERGY R Sbjct: 173 --EHLPEEECQKLLF---------ERGYPR 191 >gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] Length = 221 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 15/165 (9%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K P+++++D NIG V R F + + L P + ++ A+ Sbjct: 59 EFKEVDKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 118 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIF-SGQNVG 122 +D + F + ++A+ +LH N+ +VLA ++ A +L+E + G+ Sbjct: 119 YTVDW-KYFKHTQDAVNELH----------NDGYTVLAIEQCAGSTLLDELVLEKGRKYA 167 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E G+ E + + + I P SLN+S +M+WE Sbjct: 168 IVLGNEVKGVQQEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWE 212 >gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 233 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 16/174 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------RDGWPSEKA------RSSSAN 63 +I P+ N+G +ARA F R+ P R + K R++ A+ Sbjct: 59 CVIFCSPKTASNVGAMARACAAFECCDFRVATPLCDVECRACVNAAKGAQWLVPRAADAH 118 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A + D++R A +R F + A A E G + + Sbjct: 119 AS-LEDALRGTVGTVVGFHPWRLDDAEAEASRARFDDLAALTAAYPGGGE---DGGKLAL 174 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E GL+ E+AL +A+ S P+ L SL+++ A ++ + E S+E Sbjct: 175 VFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAREASAE 228 >gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter concisus 13826] Length = 159 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75 I+LV PQ+ +N G + R N NL +L +V P SEKA R + + ++D +++ Sbjct: 4 IVLVHPQIPQNTGAIGRMCVNANL-KLHIVKPTVFDLSEKAVRRAGLDYWKILDP-KIWE 61 Query: 76 NLKEAI-ADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L E + A+L F +ATT NR + + P + I FG E Sbjct: 62 SLDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDF---------------IFFGGEST 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL E +I NA I+ P+ SLN++ + ++ +E + +I Sbjct: 107 GLPREFMDINFKNA-ITIPMGKEGRSLNLAMSAGIIAYEAIRQNI 150 >gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 235 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 I+FG+E++G T+E AL++ I P+ + SLN+S A L+++E ++ N Sbjct: 113 TAILFGQEKYGATDEAKALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNT 172 Query: 181 KEQNTPATKGELLSF 195 Q P + + L+F Sbjct: 173 --QQLPEEECQALAF 185 >gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804] gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii] Length = 156 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 23/158 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV P++ N G R N QL LV P G+ + AR A D V+V Sbjct: 4 VVLVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDARLRRAGLDYHEWQPVQVHD 61 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L++A+A IYA T R + N V F +V +FGRE G Sbjct: 62 TLEQALAATGAPPAHIYALTTRAQRNVAEV-------------AFGPDDV-FVFGRETAG 107 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167 L++E +AL + P+ SLN+S AV + V+E Sbjct: 108 LSDEHMALFAPQQCLRLPMRAGQRSLNLSNAVAVTVFE 145 >gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E Sbjct: 13 VALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYE 59 >gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] Length = 194 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 12/143 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R + Q VNP G P+ S ++ ++ V + A L Sbjct: 34 HNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE---VHPTTEAAFRHL- 89 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R R A KE A E ++ + I+ G E+WG++ E +AL++ +I Sbjct: 90 -------RERGFSVYATALKEGARDYREVDYT-RPTAIVLGAEKWGVSEEALALADGLIH 141 Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168 P+ + SLN+S A ++++E Sbjct: 142 IPMLGMVQSLNVSVAAAVILFEA 164 >gi|239948353|ref|ZP_04700106.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922629|gb|EER22653.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 58 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 25/34 (73%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48 P+IILV PQ+GENI ARA+ NF L +L +V P Sbjct: 3 PIIILVAPQMGENISATARAIKNFGLNELGIVAP 36 >gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa SC2] gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa SC2] Length = 154 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ ++E F YATT + + + I + F ++FG+E GL Sbjct: 63 SFAEVQEKYQAGRFFYATTKAKQ---------QYSDIKFQDGDF------LVFGKETKGL 107 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A + + I P++ SLN+S + ++V+E + Sbjct: 108 PPELLAANPDTCIKMPMSDKVRSLNLSNSAAIIVYEAL 145 >gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 152 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 18/156 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G ++R N T L LV P S++ + S +V N Sbjct: 3 VVLVEPEIPPNTGNISRTCAVSN-TTLHLVEPLGFSISDRELKRAGLDYWDKLSYQVHEN 61 Query: 77 LK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E + H IY T R +N + + P+++ +V FG+E GL + Sbjct: 62 FTSVENLLQTHPIYIATTRGKNYYYDIEYPRDSVLV--------------FGKETEGLPD 107 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I I P+ P F SLN+S +V ++++E + Sbjct: 108 WIINKYYENSIRIPMAPDFRSLNLSNSVAVVLFEAL 143 >gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12J] gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] Length = 156 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +ILV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VILVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F SV P + +FG E Sbjct: 62 DWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E E ++ I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERREWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEA 146 >gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A] gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A] Length = 218 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ D N+ + R + L +VN +P+ S + VF Sbjct: 22 VLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPTFSKVSQGSEK-------WVFIT 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +I D A A R FK A + + + V I+ G E+WG++ E Sbjct: 75 TYISIDD-----AINALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 L + I+ P+ + SLN+S A ++++E + ++ K Q +P T ++L Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQRQRL-EAKMYTKMQLSPTTYNKILFEW 188 Query: 197 DYLEIS 202 Y IS Sbjct: 189 SYPNIS 194 >gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] Length = 154 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F LK D + YATT + + I + F ++FG+E GL Sbjct: 63 SFEELKALYPDGRYFYATTKATK---------RYMDIEYQDGDF------LVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A S I P+ SLN+S + +MV+E + Sbjct: 108 PPELLAANSEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 145 >gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 156 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 23/158 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +ILV P++ N G R N QL LV P G+ + AR A D VRV Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDARMRRAGLDYHEWQPVRVHD 61 Query: 76 NLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ AD IYA T + + + F +V +FGRE G Sbjct: 62 TLQEALDDTGADAGSIYALTTHAQRSVADI-------------AFKPGDV-FVFGRETAG 107 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167 L++E A+ + P+ SLN+S AV + V+E Sbjct: 108 LSDEHQAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFE 145 >gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] Length = 155 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-------CVID 69 I+LV+P++ N G +AR T L LV P G+ ++ A A D D Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFRTDDATLKRAGLDYWYAVNLTYYD 62 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S FS ++E F YA+T N+ S K+ + +FG+E Sbjct: 63 S---FSEVEERFKGHRFFYASTRANKR--YSDFEYKDGDL-------------FVFGKET 104 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + A N +I P+ SLN++ + ++V+E + + Sbjct: 105 KGLPQELLDANPNQLIRMPMTDKVRSLNLANSAAIVVYEALRQT 148 >gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] Length = 229 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G + G E+WGLT E AL + I P+ + SLN+S A +++E + + Sbjct: 112 FTGP-CAFVLGAEKWGLTEEATALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQRQAA 170 Query: 176 SEKNVKEQNTPATK-GELLSFLDYLEIS--LEERGYFRP-VEKKKKMLDDL 222 + + PA +LL Y +++ E+G P + ++ ++L+DL Sbjct: 171 GLAPLNGEGVPAEHYSDLLFEWAYPQVAAWCREQGRSYPELNEQGEILEDL 221 >gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum ATCC 27405] gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 1313] Length = 164 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++LV+P++ +N G +AR L LV P G+ E A D D V + Sbjct: 5 VVLVEPEIPQNTGNIARTCAAVG-ANLHLVKPL-GFSVEDRYLKRAGLD-YWDKVNIKYY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 FS L++ + H Y +T + + + V P + IV FG+E G Sbjct: 62 DSFSELRDKYKE-HIFYYSTTKAQKLYTDVKYPDDCFIV--------------FGKETAG 106 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169 L EE+ + N I P+ SLN+S +V ++V+E + Sbjct: 107 LP-EELLVENKEWCIRIPMRDDIRSLNLSNSVAIIVYEAL 145 >gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545] Length = 513 Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 21/96 (21%) Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP- 147 ATTAR R N V A + AA +L G+ V ++FG ER GLTNEE+ ++A ++ P Sbjct: 197 ATTARPRENVPLVTA-RNAAKLLAAEAKRGK-VAVLFGNERTGLTNEELGTAHAAVAIPT 254 Query: 148 ----------------VNPLFPSLNISQAVLLMVWE 167 P SLN+SQAV ++ +E Sbjct: 255 AGQGSLCRKSLKYTGGTGPT--SLNLSQAVGVIAYE 288 >gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 186 Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV P++ N G + R N QL LV P G+ + + A D + Sbjct: 5 IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPL-GFELDDKKLRRAGLDYHEYAHLQVHD 62 Query: 73 VFSNLKEAI--ADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +S K+A+ AD H I A TT ++ + +E A +E FSG NV ++FG E Sbjct: 63 DWSVAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSE--FSGNNVAMVFGSET 120 Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL + E+I N + P+ SLN+S +V + ++E Sbjct: 121 AGLADDIREDIGADN-WLRLPMLADSRSLNLSNSVAICLYE 160 >gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] Length = 154 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 21/157 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 ++L +P++ N G + R N +LRL+ P G+P + A+ A D ++ V Sbjct: 3 TVVLFEPEIPPNTGNIIRLCANTG-CELRLIKPL-GFPLDSAKMKRAGLDYHEFSTLIVH 60 Query: 75 SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL E + L I+A T + +N SV F +V +FG E GL Sbjct: 61 ENLAECLDTLQGKRIFALTTKGKNRPDSV-------------AFQAGDV-FLFGPETRGL 106 Query: 133 --TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 T + N I FP+ P S+N+S V + V+E Sbjct: 107 PATVLDTLPENQKIRFPMMPNNRSMNLSNTVAITVFE 143 >gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 181 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 23/169 (13%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 Q + + K P+I+++D N+G V R F + ++ L P+++ ++ A Sbjct: 16 QFKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGAT 75 Query: 65 DCVI-----DSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 D V D+++V LK E + + A A N+F+ PK + Sbjct: 76 DSVAWEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQ----PK-----------AH 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +IFG E G+ E ++LS+ +I P SLN+S + +++WE Sbjct: 121 TQYAVIFGNEVKGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWE 169 >gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 178 Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 8 LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSS 60 + + K P+II++D N+G V R F + ++ L RD + + Sbjct: 18 FKEAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATD 77 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQ 119 + + V DS+ + LKE +H A E A++L++ + +G+ Sbjct: 78 AVTWEYVEDSIALVRKLKED--GVHVCAIEQA-------------EGAVMLDKFVPTTGE 122 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FG E G+ E ++LSN +I P SLNIS + +++W+ Sbjct: 123 KYAVVFGNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWD 170 >gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 235 Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 I+FG+E++G ++E A+++ I P+ + SLN+S A L+++E ++ N Sbjct: 113 TAILFGQEKYGASDEAKAIADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNT 172 Query: 181 KEQNTPATKGELLSF 195 Q P + + L+F Sbjct: 173 --QQLPEEECQALAF 185 >gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 325 Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 L P + A++L E + Q +I G E GLT + S+ P+ P SLN++ A Sbjct: 233 LTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTDSLNVATAA 292 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKG 190 + +E SIV + ++ PA G Sbjct: 293 AMGFYERARTSIVGCGRPLR----PARGG 317 >gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] Length = 164 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 24/159 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ +N G + R +L L+ P G+ E A D I Sbjct: 5 IVLVEPEIPQNTGNIVRTCAAVG-ARLHLIKPL-GFSVEDKYLKRAGLDYWNEVDISYYD 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F LKE F YATT + N+ + P N ++FG+E GL Sbjct: 63 SFQELKEKYTGCSFYYATT-KAVKNYAEIEYP--------------DNCFLVFGKETKGL 107 Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169 E+I + N I P+ SLN+S +V ++V+E + Sbjct: 108 P-EDILVDNREWCIRIPMIGEIRSLNLSNSVAIIVYETL 145 >gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 167 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + ++FG E+ G+T ++ + ++ P NP F SLN++ AV L+ ++ Sbjct: 106 LALVFGSEKTGMTESDMDTCHVMLGIPTNPQFGSLNLAAAVQLIAYD 152 >gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] Length = 152 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 24/159 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++LV+P++ +N G VAR T L LV P G+ E A D D V V Sbjct: 3 VVLVEPEIPQNTGNVARTC-ALTQTTLHLVKPL-GFSLEDRYLKRAGLD-YWDKVEVKVW 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F NL + ATT +++ + V K IV FG+E G Sbjct: 60 DSFDNLLAVYPGRSYFLATT-KSKQRYTDVRYKKGDFIV--------------FGKETQG 104 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L E + S ++I P+ + SLN+S AV ++++E + Sbjct: 105 LPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEAL 143 >gi|213029186|ref|ZP_03343633.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 69 Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 +ID++ VF L +A+ D+ F ATTAR+R F +P E +L E+ Sbjct: 5 IIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEK 52 >gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 QN + G E+WGL+NE I++ + I P+ + SLN+S A ++++E + Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164 >gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 280 Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGLT +E L++A++ P+ L SLN++ A + ++ Sbjct: 231 VFGNEAWGLTEDERGLADAVVRVPIRGLAESLNLATAATVCLY 273 >gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 223 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 QN + G E+WGL+NE I++ + I P+ + SLN+S A ++++E + Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164 >gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 14/152 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P G+ ++ A D R+ Sbjct: 7 IVLVEPEIPPNTGNIAR-LCAVVGADLHLVKPL-GFKTDDKSLKRAGLDY---WHRLKMT 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + E D ARN K LA + I+ +E F + +IFGRE GL+ E Sbjct: 62 IYEDFDDFE------ARNPGG-KRYLATTKGKIIYSETTFE-EGCYLIFGRETKGLSPEI 113 Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +A +I P+ SLN+S AV ++ +E Sbjct: 114 LARYPEHLIRLPMKNECRSLNLSNAVAIVTYE 145 >gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12D] Length = 156 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F S+ P + +FG E Sbjct: 62 DWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGD---------------WFVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERREWFPATQRIRLPMRPDNRSLNLSNTVAVVVFEA 146 >gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 223 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 QN + G E+WGL+NE I++ + I P+ + SLN+S A ++++E + Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164 >gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 281 Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANAD 65 LQ S+K P+I++ + P+ NIG + R NL + + NP+ D + RSS Sbjct: 127 LQLSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSS---VG 183 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 CV + E IA L +N + A A+ + ++ + I+ Sbjct: 184 CVFTTKIATGTTSEIIAYLK---------EHNIATYCAALTASKIYTTVDYTSGS-AIVV 233 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E GL+ E ++ SN I P+ S+N+S A ++++E Sbjct: 234 GTEATGLSKEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIFE 275 >gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 156 Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F S+ P + +FG E Sbjct: 62 DWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 146 >gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 186 Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+LV P++ N G + R N QL LV P G+ + + A D ++V Sbjct: 5 IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPL-GFELDDKKLRRAGLDYHEYAHLQVHD 62 Query: 76 N---LKEAI--ADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N K+A+ AD H I A TT ++ + +E A ++ FSG NV ++FG E Sbjct: 63 NWSIAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSD--FSGNNVAMVFGSET 120 Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL + E+I N + P+ SLN+S +V + ++E Sbjct: 121 AGLADDIREDIGADN-WLRLPMLADSRSLNLSNSVAICLYE 160 >gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+L +PQ+ +N G +AR N L ++ P G+P + + A D +D VR + Sbjct: 20 IVLFEPQIPQNTGNIARTCAATN-APLHIIKPM-GFPIDDRKMRRAGLDYWEKLD-VRFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133 NL++ + ++ N + L K A+ V ++ F GQ +FGRE GL Sbjct: 77 DNLEDFL------------DKCNGQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLP 124 Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169 + + P+N SLN+S V ++V+E + Sbjct: 125 EAFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEAL 162 >gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum CFBP2957] gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CFBP2957] Length = 175 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N L++A D ++A T R F + P + +FG E Sbjct: 81 NWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGD---------------WFVFGSETR 125 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 126 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 165 >gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 182 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 24/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 ++L PQ+ +N G +AR N T L ++ P G+P + + A D +R + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPM-GFPIDDRKMKRAGLDYWDKLDIRFYD 76 Query: 76 NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E +A LH I + F + EA N+R Q+ +FGRE G Sbjct: 77 HLDEFLAQCDGSLHVI--------SKFADRVYSDEA---YNDR----QSHYFLFGREDTG 121 Query: 132 LTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 L + ++ + P+N SLN+S AV ++V+E + Sbjct: 122 LPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEAL 161 >gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G + G E+WGLT E L + + P+ + SLN+S A +++E + + Sbjct: 112 FTGP-CAFVLGAEKWGLTEEATGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAA 170 Query: 176 SEKNVKEQNTPATK-GELLSFLDYLEIS--LEERGYFRP-VEKKKKMLDDL 222 + PA + G+LL Y +++ E+G P + ++L+DL Sbjct: 171 GVAPHNGEGIPAEQYGDLLFEWAYPQVAAWCREQGRSYPALSGDGEILEDL 221 >gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299] gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299] Length = 369 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++V + NIG +ARA +F LRLV PR S + SS+ A V+ + Sbjct: 84 CVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQHVVHGAGEYL 143 Query: 76 NLKEAIADLHFIYA 89 ++ EAIAD A Sbjct: 144 SVAEAIADCDAAVA 157 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 ++FGRE GLT+EE+ L +A P L SL++S A ++++ Sbjct: 287 LVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVSHAAVIIL 329 >gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] Length = 473 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----ADCVIDSVR 72 ++LV P+ NIG VARA NF L LV PR S + A D V+D + Sbjct: 60 VVLVAPKHEANIGAVARACANFECLSLFLVAPRCAVGSGGVGAGEARKVACGDAVLDRLV 119 Query: 73 VFSNLKEAIAD 83 V L EA+AD Sbjct: 120 VTDTLAEALAD 130 >gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68] gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1] gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14] gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 181 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D VR + Sbjct: 17 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLDVRFYD 74 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL E F+ + + R + S A K + +E G +FGRE GL + Sbjct: 75 NLAE------FMDYASKQGRVHLVSKFADKTYS---DEDYNDGNIHYFLFGREDKGLPED 125 Query: 136 EI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 + I P+N SLN+S ++V+E + Sbjct: 126 FMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEAL 161 >gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] Length = 231 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 15/121 (12%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WPS + R S+SA ++ + V+ N+ +A++ L + VLA +A Sbjct: 52 WPSVRMRTMVSASAGSNSWV-KVKTHRNITDAVSHL----------KTQGMQVLATNLSA 100 Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ R I + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 101 KAVDFREIDYTRPTCILMGQEKTGITAEALALADQDIIIPMVGMVQSLNVSVASALILYE 160 Query: 168 C 168 Sbjct: 161 A 161 >gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 235 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 20/165 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L++ + IL + N G +AR+ F + + N R ++ SSA A Sbjct: 84 KLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDAIIFPNRRAATVNDTVVKSSAGAIY 143 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ID +V SN+ ++I L +IYAT + + E FSG+ Sbjct: 144 DIDVCKV-SNISQSIDKLKEAGFWIYATDLEGED--------------IRECDFSGK-AA 187 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ G E G++ + S+ I+ P F SLN S A ++++E Sbjct: 188 VVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYE 232 >gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 250 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q II G+ER G T E IAL++ I P+ + SLN+S A L+++E Sbjct: 111 QPTAIILGQERHGATEEAIALADKNIVIPMVGMVQSLNVSVAAALVLYE 159 >gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] Length = 181 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 26/161 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+L +PQ+ +N G +AR N L ++ P G+P + + A D +D VR + Sbjct: 19 IVLFEPQIPQNTGNIARTCAATN-APLHIIKPM-GFPIDDRKMRRAGLDYWEKLD-VRFY 75 Query: 75 SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL++ + LH I S A K + +E GQ +FGRE Sbjct: 76 DNLEDFLDKCDGQLHLI------------SKFASK---VYSDEHFDDGQRHYFLFGREDK 120 Query: 131 GLTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 GL + + P+N SLN+S V ++V+E + Sbjct: 121 GLPEAFMRKYPEKALRIPMNDEHVRSLNLSNTVCMIVYEAL 161 >gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 180 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 Q + + K P+I+++D NIG V R F + ++ L P+++ ++ A Sbjct: 16 QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 65 -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118 + V +++ LKE D++ I A N + +LN+ +G Sbjct: 76 DSVAWEYVENTLSAVEKLKEQ--DVYIISIEQAEN-------------STMLNDFQPNGK 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q IIFG E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 121 QKYAIIFGNEVKGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWE 169 >gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 165 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 28/162 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+L++P++ +N G + R+ N T+L L+ P G+ + R A D +D + V+ Sbjct: 3 IVLLEPEIPDNTGNIGRSCVATN-TRLHLIEPL-GFKLSEKRIKRAGMDYWEKLD-LTVY 59 Query: 75 SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S+LK+ A H +ATT + + +K VL + I+FG+E Sbjct: 60 SDLKDFYEKNPKAKEHMYFATT-KAHHTYKDVLYDCDEY--------------IMFGKES 104 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169 G+ EEI N I P+ SLN+S +V ++++E + Sbjct: 105 AGIP-EEILAENEENCIRIPMWGDIRSLNLSNSVAVILYEAL 145 >gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] Length = 153 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++LV+P++ N G +AR + T L LV+P G+ ++ A D VR+ + Sbjct: 8 VVLVEPEIPPNTGSIAR-LCGATDTVLHLVHPL-GFDTDDKHLKRAGLD-YWQHVRIVHW 64 Query: 75 SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 SNL+E +A L+F+ T R AI F +IFGRE Sbjct: 65 SNLEEFLAAQDENRLYFLSKKTQR-----------PYTAISFTPGDF------LIFGRET 107 Query: 130 WGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169 GL E + L ++ + P+ NP SLN++QA ++++E + Sbjct: 108 KGLPAEILELYADRCLLIPMSNPHIRSLNLAQAAAIVLYEAL 149 >gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 190 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 24/154 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLK 78 DP NI V R+ L + LV + WP E +R SSA+A +D VR S Sbjct: 21 DPH---NISAVLRSCDAVGLLTVHLVYTIEEWP-ELSRVSSASAVKWLDIVRHESIEACY 76 Query: 79 EAIADLHF-IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+ F IYAT +A +R+ + L V ++FG E G+++E Sbjct: 77 QALRAQGFTIYATHLSAASRDLYDLDLTGP---------------VALVFGNEHRGVSDE 121 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +A ++ + P+ + SLNIS A + ++E + Sbjct: 122 AVANADGSVVIPMMGMVQSLNISVACAVSLYEAL 155 >gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] Length = 180 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 7 QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + S K P+ IIL D + N+G V R F L L L P ++ A+ Sbjct: 16 EYHESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAE 75 Query: 66 CVIDSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQN 120 DSV+ FS++ +AI +L + S+ A ++A L+ FS G Sbjct: 76 ---DSVKWEYFSSVVDAIEEL----------KAKGYSICAIEQAEGSLSLENFSPSKGTR 122 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +IFG E G+ E I L + + P SLN+S +++W+ Sbjct: 123 YALIFGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQ 169 >gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 178 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 8 LQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + S K P+I+++D + NIG V R F + ++ L P+++ ++ A Sbjct: 17 FKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGATE 76 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIF 125 + + N+ E I +L + N + E+A+ L + ++ Q ++F Sbjct: 77 TV-AWEHHENVLEVIENL--------KKENVLTLAIEQVESAVFLQDFQVEKNQKYALVF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E +G++ E +A+ + I P SLNI+ + ++VW+ + Sbjct: 128 GNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQ 172 >gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 11/163 (6%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +++ K P+++++D NIG V R F + + L P+ + ++ A+ Sbjct: 16 EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124 +D V + + ++A+ L ++R + E +I+L+E + + ++ Sbjct: 76 NSVDWVY-YEDTRDALRGL--------KDRGFTICAIEQAERSIMLDELVVDKAKGYAVV 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E + L + I P SLN+S A +++WE Sbjct: 127 LGNEVKGVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWE 169 >gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] Length = 164 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G +AR + T L LV+P G+ + A D D +++ + Sbjct: 19 VVLVEPEIPPNTGSIAR-LCGATDTILHLVHPL-GFKIDDKHLKRAGLD-YWDQIKIVN- 74 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +DL R +F S K+A + E F + ++FG+E GL E Sbjct: 75 ----WSDLDAFLTAQDEQRLHFLS----KKADRLYTEVRFQPGDF-LVFGKETKGLPEET 125 Query: 137 IAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169 +AL ++ + P+ NP S+N++QA ++++E + Sbjct: 126 LALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAI 160 >gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] Length = 170 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 20/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D +D + + Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPM-GFPIDDRKMKRAGLDYWDKLD-ITYY 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133 NL+E ++ + + + L K A V E F + N +FGRE GL Sbjct: 65 DNLEEFMSKM------------DGQLYLISKFAEKVYAEENFATAGNHYFMFGREDKGLP 112 Query: 134 NEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 + + A S + P+N SLN+S V +MV+E + Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMMVYEAL 150 >gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 157 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVI-DS 70 I+LV P++ N G +AR N +L L+ P SEKA + + D + +S Sbjct: 4 IVLVHPKIPPNTGNIARLCVNLG-AKLHLIEPLGFDISEKAVRRAGLDYWKDLDLTVWES 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + F L E D H ATT R +++ P + +IFG E Sbjct: 63 IEAF--LAEHPIDGHCHLATTKTERLYWEAEYHPGDW---------------LIFGSETE 105 Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + + I+ P++P S+N+S AV ++ +E + S Sbjct: 106 GLPAELLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQS 148 >gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 283 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 VG +FG E WGL E +AL++ +S P+ SLN++ A + ++ Sbjct: 229 VGWVFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLY 274 >gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] Length = 228 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 18/188 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSV--RVFSNLKEA 80 N V R+ + + L+ G P+E +R ++A + V R + + A Sbjct: 31 HNFSAVLRSCDAVGVLEAHLIPAAHGIPTEDQNPSRHTAATSGSAAKWVGLRTYPDTPSA 90 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ADL R+R AI E ++ + I+ G E+WG+T E L+ Sbjct: 91 FADL--------RSRGFVIYAAHFSHKAIDYREVDYT-RPTCILLGTEKWGVTEEAATLA 141 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL---SFLD 197 + I P+ + SLN+S A ++++E I + + + + PA LL ++ D Sbjct: 142 DGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQAGMYD-RPRLEPALHQRLLFEWAYPD 200 Query: 198 YLEISLEE 205 + E +E Sbjct: 201 WAERCRKE 208 >gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103] gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103] Length = 233 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WPS++ R S+SA ++ ++ V ++ +AI+ L + +LA +A Sbjct: 52 WPSQRMRTQASASAGSNSWVNVV-THRSINDAISHL----------KTQNMQILATNLSA 100 Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ R I + I+ G+E+ G+T+E +AL++ I P+ + SLN+S A L+++E Sbjct: 101 DAVDFREIDYTKPTCILMGQEKTGITDEALALADRHIIIPMVGMVQSLNVSVASALILYE 160 Query: 168 C 168 Sbjct: 161 A 161 >gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis AJ13355] Length = 233 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WPS++ R S+SA ++ ++ V ++ +AI+ L + +LA +A Sbjct: 52 WPSQRMRTQASASAGSNSWVNVV-THRSINDAISHL----------KTQNMQILATNLSA 100 Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ R I + I+ G+E+ G+T+E +AL++ I P+ + SLN+S A L+++E Sbjct: 101 DAVDFREIDYTKPTCILMGQEKTGITDEALALADRHIIIPMVGMVQSLNVSVASALILYE 160 Query: 168 C 168 Sbjct: 161 A 161 >gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 250 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 22/161 (13%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSV 71 P+++L N+G +AR F L RL+ PRD PSE A + ++ Sbjct: 98 PLLVLDRIGNAHNLGAIARTAAFFGLP--RLILPRDPAAAQPSEAAYRVAEGGMTHLELA 155 Query: 72 RVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L+ +A + + R + + +G+ + ++ G E Sbjct: 156 RVDDLPAFLRSLVAAGYDVIGAATRGG--------------LPQAQSHTGKPIALVLGNE 201 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ E A +++ P + SLN+S A +++WE + Sbjct: 202 EHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWELL 242 >gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] Length = 175 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F + P + +FG E Sbjct: 81 SWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGD---------------WFVFGSETR 125 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 126 GLSEERRAWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 165 >gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 214 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA-RSSSANADCV--IDS 70 P+++L N+G +AR M F L +L + + P PSE + R S + V I + Sbjct: 65 PLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWVEVIRA 124 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + LK + D H I T ++ + K A VLN G+ + +I G E Sbjct: 125 QKFVAALKR-LRDSHRIVGT---------ALGSGKPVAEVLNR---PGKPIALILGNEED 171 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL +A + I++ P + SLN++ +++ E Sbjct: 172 GLPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHE 208 >gi|167621113|ref|ZP_02389744.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis Bt4] Length = 128 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVF 74 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 32 FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVV 91 Query: 75 SNLKEAIADLHFIYATTARNR 95 L +A+ + + A TAR+R Sbjct: 92 PTLADALNGVQWSLALTARSR 112 >gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 223 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 QN + G E+WGL+ E I++ + I P+ + SLN+S A ++++E + + Sbjct: 114 QNTCFVLGAEKWGLSKEIISMVDQSIFIPMRGMVQSLNVSVAASILLFEAI--------R 165 Query: 179 NVKEQNTPATKGELLSFLDYLEISLE 204 K + T GE L+ +Y + E Sbjct: 166 QRKNKGKLPTNGEGLNMDEYRKTLFE 191 >gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 156 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F + P + +FG E Sbjct: 62 SWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 146 >gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319] gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319] Length = 182 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 14/167 (8%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+I+++D N+G V R+ F + + L P+ + ++ + Sbjct: 16 EFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQN 120 +D + F ++A+ DLH F+Y+ + K + LN E + + Sbjct: 76 DSVDW-KYFERTEDAVEDLHKKGVFVYSVEQVEHST-------KLHTLDLNAESTTNNSH 127 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 II G E G+ + +S+A + P SLN+S +++WE Sbjct: 128 YAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWE 174 >gi|167720293|ref|ZP_02403529.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei DM98] Length = 112 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR P +A + ++ AD V+ S V Sbjct: 33 VLVEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 90 Query: 74 FSNLKEAIADLHFIYATTARNR 95 L +A+ + + A TAR+R Sbjct: 91 VPTLADALNGVQWSLALTARSR 112 >gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 29/178 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+LV+PQ+ +N G +AR +L LV P G+ + + A D +D + + Sbjct: 6 IVLVEPQIPQNTGNIARTC-AATGARLHLVKPL-GFAIDDKKLKRAGLDYWHYLD-ITYY 62 Query: 75 SNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK+ A +F Y TT + + N+ V P A IV FGRE G Sbjct: 63 DGLKDFFAQNSGGNFYYFTT-KGQANYSEVAYPDNAYIV--------------FGREDAG 107 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQN 184 L E++ N + P+ SLN+S V + +E + + S+ N+ + N Sbjct: 108 LP-EDLLFHNPETCVRLPMRGGIRSLNLSNTVAVATYEVLRQWGFPALESQGNLTKYN 164 >gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320] gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 239 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP EK R S +A ++ ++ N IAD I A+ + L+ K A Sbjct: 52 WPEEKMRMLVSPAAGSNSWVNV-----NTHPTIADA--INTFRAQGMQVLATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + E ++ Q II G+E+ G++ E IAL++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-QPTCIIMGQEKTGISPEAIALADQDIIVPMMGMVQSLNVSVASALILYEA 161 Query: 169 MENSIVSSEKNVKEQNTPATKGELLSF 195 + N E A + ++L F Sbjct: 162 QRQRQAAGMYNRTESALTAEEQQILLF 188 >gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] Length = 248 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 12/167 (7%) Query: 6 PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + K P+I+ +D N G ++R + + L PS S++ NA Sbjct: 91 PTLYEAGKTPLIVALDGVTDIRNFGAISRTCECAGVDAILL-------PSY--CSATINA 141 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 D V S L D + A + F + ++A I ++ +S V ++ Sbjct: 142 DAVKTSAGALHYLPVCRTD-NLCQAIKFLKNSGFTIIALSEKANIAYTDQDYSSPTV-LV 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G+++E ++L ++ + PV SLN+S A ++++E +++ Sbjct: 200 LGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIYEAVKS 246 >gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 182 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K P++I++D NIG V R F + ++ L P+++ ++ A Sbjct: 16 DFKEAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVG 122 + N+ E I +L + + SV A + E AI LN+ ++ + + Sbjct: 76 ETV-VWEHHENVLEVIENL----------KKDEISVFAIEQVENAIFLNDFKVEATKKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +IFG E +G+ E I L + I P SLNIS + ++VW+ Sbjct: 125 LIFGNEVFGVNQEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWD 169 >gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] Length = 175 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + ++K P+I+++D N+G V R+ F + + L PS + ++ A+ Sbjct: 8 EFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 67 Query: 66 CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 DSV + F+ +AI +LH A+ F +V + ++ N G + Sbjct: 68 ---DSVTWKYFAQTTDAIDELH------AKGTKVF-AVEQVAGSTMLQNLDTEVGTRYAV 117 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + G E G+ + L + + P SLN+S A ++VWE Sbjct: 118 VLGNEVKGVQQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWE 161 >gi|258619945|ref|ZP_05714985.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] gi|258587678|gb|EEW12387.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] Length = 112 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 + P NP + SLN++ AV L+ +E S+ S+ +++ EL F ++LE Sbjct: 1 MCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELELFYEHLEK 60 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + F ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 61 VITQTE-FISAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 106 >gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 ++L PQ+ +N G +AR N T L ++ P G+P + + A D +R + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPM-GFPIDDRKMKRAGLDYWDKLDIRFYD 76 Query: 76 NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERW 130 +L E +A LH I K A V +++ ++ Q+ +FGRE Sbjct: 77 HLDEFLAQCDGSLHVI----------------SKFADQVYSDKDYNDRQSHYFLFGREDT 120 Query: 131 GLTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 GL + ++ + P+N SLN+S AV ++V+E + Sbjct: 121 GLPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEAL 161 >gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. Y412MC10] Length = 154 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F L+ + + YATT + I + F ++FG+E GL Sbjct: 63 SFEELQALYPEGRYFYATTKATKRYMD---------IEYQDGDF------LVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A + I P+ SLN+S + +MV+E + Sbjct: 108 PRELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 145 >gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] Length = 154 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR + L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATGI-HLHLVRPL-GFRTDDATLKRAGLDYWYAVHIEYHD 62 Query: 73 VFSNLKEAIADLHFIYATT-ARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F ++E A F +ATT A+ R +FK F + +FG+E Sbjct: 63 SFQEVEEKYAGSRFFFATTKAKKRYTDFK----------------FQDGDF-FVFGKETK 105 Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL E + A + + P+ SLN+S + ++V+E + Sbjct: 106 GLPPEILEAHPDTTMRMPMTDKVRSLNLSNSAAIIVYEAL 145 >gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] Length = 180 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 Q + + K P+I+++D NIG V R F + ++ L P+++ ++ A Sbjct: 16 QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 65 -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118 + V +++ V LKE ++ I A N + +LN+ +G Sbjct: 76 DSVAWEYVENTLSVVEKLKEQ--GVYIISIEQAEN-------------STMLNDFQSNGK 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q IIFG E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 121 QKYAIIFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWE 169 >gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R SS+A ++ ++ V+ N+ +A+ L AR + L+ K A Sbjct: 52 WPGNRMRTMASSAAGSNSWVE-VKTHRNISDAVNHL------KARGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E ++L++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITEEALSLADQDIIIPMTGMVQSLNVSVASALILYE 160 >gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] Length = 168 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 24/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G + R N QL L+ P G+ + D I Sbjct: 17 IVLVEPEIPHNTGNIIRTCANTG-AQLHLIKPL-GFSLDDKHLKRCGLDYWDIADIKYYD 74 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F L+E + ++ YATT ++ A + NE F ++FG+E GL Sbjct: 75 SFEELQEKYPEANYFYATTKTQKSY---------ADVEYNEGCF------LVFGKETKGL 119 Query: 133 TNEEIALSNA-IISFPVNPLFPS--LNISQAVLLMVWECM 169 + I + I P+ + + LN+S +V ++V+E + Sbjct: 120 PKDLIEKNEGHCIRIPMRGIEGARCLNLSNSVAIVVYEAL 159 >gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter thermophilus TK-6] Length = 240 Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G++ + +S+ ++S P+ SLN+S A + +WEC+ SI+ S Sbjct: 186 LVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVRGSIIKS 239 >gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 177 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R F + L ++ ++E F + V ++ G ER GL++EE++L N + PV L Sbjct: 96 RKEGWFLAALEQTTDSVNMHEYQFP-RKVALVIGNERHGLSDEELSLMNVCLEIPVWGLP 154 Query: 153 PSLNISQAVLLMVWE 167 S N++ A + ++E Sbjct: 155 HSYNVANATAMALYE 169 >gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum H04402 065] Length = 155 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N ++L L+ P G+ ++ A D + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D +F ++TT + NNF + + ++ I+FGRE GL Sbjct: 63 SYEELREKYKDSNFYFSTT--HGNNFYTDVKYRDGDF-------------IVFGRESSGL 107 Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 +E + + I P +N SLN+S V ++ +E + Sbjct: 108 PDEIRDSDPSKCIRIPMINTTTRSLNLSNTVAVVTYEAL 146 >gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 235 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 31/171 (18%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + Q+ + WP + R SS+A ++ + V+ S +++AI Sbjct: 31 HNVSAVIRTADAIGIHQIHAI-----WPDQSLRTQLSSAAGSNSWVQ-VQTHSTIQQAIE 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141 +++ VLA + ++ R I + II G+E+ G++ + +AL++ Sbjct: 85 QF----------KSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQAVALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM-----------ENSIVSSEKNVK 181 I P+ + SLN+S A L+++E E SI+S E+ K Sbjct: 135 HDIIIPMAGMVQSLNVSVASALILYEAQRQRQLVGMYQREESILSEEEQQK 185 >gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 206 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 18/178 (10%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +++ K P+I+++D N+G V R F + + L P+ + ++ + Sbjct: 16 EFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYA-------TTARNRNNFKSVLAPKEAAIVLNER 114 +D R F ++A+ +LH F+Y+ T N K + + A ++ Sbjct: 76 DSVDW-RYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAVDTA 134 Query: 115 IFSGQN-----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I + Q+ +IFG E G+ + +S+ + P SLN+S ++VWE Sbjct: 135 IENRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWE 192 >gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 Length = 182 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L PQ+ N G +AR N T L ++ P G+P + + A D + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-------YWDK 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129 L D+HF + N+F ++ + K I + +S +N +FGRE Sbjct: 71 L-----DVHFYDSL-----NDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGRED 120 Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169 GL E + S + PVN SLN+S V ++V+E + Sbjct: 121 KGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEAL 162 >gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 274 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL +E+ AL++A++ P+ SLN++ A + ++ Sbjct: 225 VFGNEAWGLRDEDRALADAVVRVPIRGRAESLNLATAATVCLY 267 >gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 233 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 18/163 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L N + L + NI V R+ + Q+ V WP + R S A Sbjct: 13 LDNRQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQIHAV-----WPDDDMRVSGNTASGS 67 Query: 68 ---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +D+V+ ++ F A A + + + + V I Q I+ Sbjct: 68 QQWVDTVKHYT----------FEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIV 117 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G ER G++ E IA ++ I P+ + SLN+S A L+++E Sbjct: 118 MGNERDGVSAEAIAAADQHIIIPMRGMVQSLNVSVAAALVMYE 160 >gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] Length = 163 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRVFS 75 I+L +P++ +N G +AR T L L+ P G+ ++ + A D + +V+ + Sbjct: 4 IVLHEPEIPQNTGNIARTCAATGAT-LHLIEPL-GFSLDEKQIKRAGLDYWHLVNVQTYK 61 Query: 76 NLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +E + ++ +Y T ++R + V +E I+FG+E G+ Sbjct: 62 DYEEFLEKNNYPKVYMATTKSRQTYTDVSYEEECY--------------IMFGKETAGIP 107 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 EEI L N I P+ SLN+S +V ++++E + Sbjct: 108 -EEILLDNKETCIRVPMISEARSLNLSNSVAIVIYEAL 144 >gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] Length = 153 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R + +L + I E ++ +V ++ GRE G+ +E A+++A ++ PV P Sbjct: 69 RRDQGCRLILLTTKGLISYFEYRYAPSDV-LMLGRESAGVPDEVAAVADARLAIPVKPGL 127 Query: 153 PSLNISQAVLLMVWECMENSIVSSEK 178 SLNI+ A ++V E + ++ E+ Sbjct: 128 RSLNIAVAAAMVVGEALRQTVWQGER 153 >gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 230 Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 22/147 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 NI V R + Q+ + WP+ + + SS+A ++ + V+ +++A+ Sbjct: 31 HNISAVIRTADAVGVHQVHAI-----WPTSRMKTLVSSAAGSNSWV-QVKTHRTIQDAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L +N VLA E A+ E ++ + I+ G+E+ G+T E + L+ Sbjct: 85 HL----------KNEGMQVLATNLSEHAVDFREIDYT-RPTCILLGQEKTGITAEALKLA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167 + I P+ + SLN+S A L+++E Sbjct: 134 DRDIIIPMTGMVQSLNVSVASALILYE 160 >gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025] gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025] Length = 182 Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 28/162 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L PQ+ N G +AR N T L ++ P G+P + + A D + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-------YWDK 70 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129 L D+HF + N+F ++ + K I ++ +S +N +FGRE Sbjct: 71 L-----DVHFYDSL-----NDFMNICSGKLHLITKFADKTYSDENYDDSEHHYFLFGRED 120 Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169 GL E + S + P+N SLN+S V ++V+E + Sbjct: 121 KGLPEEFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEAL 162 >gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 234 Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLK 78 DP N+G +AR+ FN + + R+ ++ +S A +D+V + +NL Sbjct: 100 DPH---NLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGA---VDNVNICQVTNLS 153 Query: 79 EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + I L +IYA N + + FSG+ V II G E G+++ Sbjct: 154 QTIEKLKKAGFWIYAALLEGDN--------------IKDVDFSGK-VAIIIGNEGKGISD 198 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I S+ + P F SLN S A ++++E + Sbjct: 199 NLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVI 233 >gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 178 Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 27/171 (15%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 + +++ K P+II++D + N+G V R F + ++ L P + R ++ A Sbjct: 18 EFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGAT 77 Query: 65 -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNE-RIF 116 + V D+V + LKE + +LA ++A AI+LN + Sbjct: 78 ETVVWEYVNDTVALVERLKE-----------------DHVKILAIEQAEDAIMLNTFKPE 120 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FG E G+ + ++ S+A+I P SLNIS +V +++W+ Sbjct: 121 PNTTYAVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWD 171 >gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] Length = 191 Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L D + N+G V R+ F + + L P+ + ++ + DSV R F Sbjct: 27 VVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGE---DSVAWRYF 83 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGR 127 ++ +EA+ +LH F+Y+ + L P+ A+ E S ++ +I G Sbjct: 84 AHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAGDRHYALILGN 143 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E G+ + +S+ + P SLN+S +++WE Sbjct: 144 EVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWE 183 >gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 171 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 30/175 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75 I+LV+P++ +N G +AR ++L L+ P SEKA R + + ++D +RV+ Sbjct: 4 IVLVEPEIPQNCGNIARTC-AATRSRLHLIEPLGFDISEKAVRRAGLDYWPMVD-LRVYR 61 Query: 76 NLKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSG----QNVGIIFGRE 128 NL+ HF A N N + AP++ ++G N + FG+E Sbjct: 62 NLE------HFF----AENPNPDLWLATTKAPQD---------YTGATFRDNCYLFFGKE 102 Query: 129 RWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 GL E +A + I P+ SLN+S +V ++ +E + V E Sbjct: 103 TAGLPEEFRLAHYDRCIRIPMRADARSLNLSNSVAILAYEALRQQGFPQLSGVGE 157 >gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus] Length = 144 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 22/156 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F L++ + F Y +T + + I + F ++FG+E GL Sbjct: 63 SFEELQQKYPEGRFFYTSTKATK---------RYCDIAFQDGDF------LVFGKETKGL 107 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWE 167 E +A + ++ I P+ SLN+S + ++V+E Sbjct: 108 PPELLAANPDSCIRMPMTDKVRSLNLSNSAAIIVYE 143 >gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] Length = 183 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 V++L D + N+G V R+ F + + L P+ + ++ + DSV R Sbjct: 29 VVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGE---DSVAWRY 85 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRER 129 FS ++A+ +L ++ + F + E +I L + + + ++FG E Sbjct: 86 FSRAEDAVTEL--------QSHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGYAVVFGNEV 137 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + +S+ + P SLN+S +++WE Sbjct: 138 KGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWE 175 >gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 270 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 12/165 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ KG ++IL Q+ NIG V R+ + + R K +S + Sbjct: 115 HLQPRQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLF 174 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V S+++ A A L R ++ V A + + +S + I+ G Sbjct: 175 ALPIVE--SDVETAYAWL---------KRYGYQVVTTSPRARVSFRQARYSTRTA-IVMG 222 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ER G++ + A + +S P++ SLN+ A +LM++E + Sbjct: 223 NEREGVSEDWFARHDLSVSIPMHGRADSLNVGNAAVLMLYEVLHQ 267 >gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 178 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 25/170 (14%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 Q + + K P+I+++D NIG V R+ F + ++ L P + + ++ A Sbjct: 18 QFKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGAT 77 Query: 65 -----DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FS 117 + V ++V + LK E I +YA + E A +LN+ + Sbjct: 78 DTVTWEYVENTVSLVKKLKAEGIK----VYA------------IEQAEGATMLNDFVPEK 121 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q ++FG E G+ E ++ S+A+I P SLNIS + +++W+ Sbjct: 122 HQTTAVVFGNEVKGVQQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLWD 171 >gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] Length = 175 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 23/172 (13%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+I+++D NIG V R F + ++ L P+++ ++ A Sbjct: 16 EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 66 CVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118 + D + V LK+ ++ + T E AI+L++ + + Sbjct: 76 ETVTWEYAKDVLEVVHQLKQENVKVYSVEQT---------------ENAIMLDDFQPETN 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +IFG E G++ E I LS+ +I P SLNIS + +++W+ + Sbjct: 121 TKYALIFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172 >gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum] Length = 1145 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 18/167 (10%) Query: 15 PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-----------ARSSSA 62 P+++L+D + NIG + R F + L L N S + +R + Sbjct: 321 PIVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYLSSRGAIE 380 Query: 63 NADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + D + + R + N+ + A+ + +TA ++ L + +A+ L + Sbjct: 381 HLDVIPITARNTAINMIKEFAEQKWEIVSTATAISDKALTLFSEGSALTLGTKPLL---- 436 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +IFG E G+ LS A ++ P L SLN+SQ+ +++ EC Sbjct: 437 -LIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIILAEC 482 >gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 QN + G E+WGL+NE ++ + I P+ + SLN+S A ++++E + Sbjct: 114 QNTCFVLGAEKWGLSNELKSMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164 >gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 156 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G + R N + QL L+ P G+P + A+ A D +++V+ Sbjct: 4 VVLVEPEIPPNTGNIIRLCAN-SGAQLHLIEPL-GFPLDDAKMRRAGLDYHEFATMKVYK 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N L++ D ++A T R + F ++ P + IFG E Sbjct: 62 NWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDM---------------FIFGSETK 106 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E A + P+ P SLN+S +V + V+E Sbjct: 107 GLSPEIHAFFQDGHRVRLPMRPDNRSLNLSNSVAIAVYEA 146 >gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 294 Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +R G IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 232 DRGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 285 >gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium praevalens DSM 2228] Length = 161 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 27/173 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVF 74 I+LV+P++ +N G +AR N T L LV P S+K R+ D + V+ + Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTNST-LHLVRPLGFSTSDKYLKRAGLDYWDKL--DVKYY 59 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL + D F YATT AP + + E + +FG+E G Sbjct: 60 DNLTDFFIKNKDGRFFYATTK----------APNSYSDLEYE-----ADDYFLFGKETAG 104 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVK 181 L E + SN I P+ SLN+S +V ++++E + +N+ ++ K K Sbjct: 105 LP-ESLLESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQNNFINLNKKGK 156 >gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 225 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 271 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL +E++AL++A + P+ SLN++ A + ++ Sbjct: 222 VFGNEAWGLRDEDLALADATVRVPLRGRAESLNLATAATVCLY 264 >gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Query: 8 LQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + K PV+IL+D +N +G V R F + ++ L + + ++ A+ Sbjct: 20 FKKAPKLPVVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPENREVHKTALGAED 79 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGI 123 +D V + EA+ L + ++ + A ++A + FS GQ + Sbjct: 80 AVDWEYV-KDTTEAVDRL---------KKEGYR-IFAIEQAENTTSLENFSLSPGQKYAL 128 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 IFG E G+ E I LS+ I P S NIS V +++W+ + Sbjct: 129 IFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQII 174 >gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] Length = 162 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 28/161 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ +N G +AR + L L+ P G+ + A D D + ++ Sbjct: 3 IVLVEPEIPQNTGNIARTCA-VTGSSLHLIEPL-GFSIDDRYLKRAGLD-YWDKLDIYYY 59 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + D +F +ATT APK IV + +N I+FG+E G Sbjct: 60 DSLEELMKKYKDSNFYFATTK----------APKSYDIVSYQ-----ENDFIVFGKETAG 104 Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECM 169 L E L N I I P+ SLN+S +V ++++E + Sbjct: 105 LP--ESLLKNNIENCIRIPMKDNTRSLNLSNSVAIILYEAL 143 >gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str. Langeland] gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. Langeland] gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. 230613] Length = 155 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N ++L L+ P G+ ++ A D + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D +F ++TT + NNF + + + I+FGRE GL Sbjct: 63 SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107 Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 +E + + + I P +N SLN+S V ++ +E + Sbjct: 108 PDEIKDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEAL 146 >gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074] Length = 275 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 224 IFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266 >gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] Length = 180 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + + K P+I+++D NIG V R F + ++ L P+++ ++ A Sbjct: 16 QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 66 CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVG 122 DSV N A+ L + + + + E + +LN+ +G Q Sbjct: 76 ---DSVAWEYVENTLSAVEKL--------KEQGVYIISIEQAENSTMLNDFQPNGKQKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 IIFG E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 125 IIFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWE 169 >gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 224 IFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266 >gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14] gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14] Length = 286 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 28/43 (65%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL + AL++A++ P++ + SLN++ A + ++ Sbjct: 226 VFGNEAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLY 268 >gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] Length = 150 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N+G V R + + L+ P G+P + R A D ID V V Sbjct: 3 IALFEPEIAGNVGNVMR-LGACMGAGVDLIEPL-GFPWDDRRVRRAAMD-YIDHVEVVRH 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + A A + TT ++++ P + ++FG+E G Sbjct: 60 VSFEAFRAARAGQRLVLFTTRATQSSYDFAYRPDDI---------------LLFGKESAG 104 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +T+ A +A + P+ P SLN++ + L + E + + Sbjct: 105 VTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQT 145 >gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] Length = 150 Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + +N G + R NL + ++ P G+P+ A D +D V + + Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNL-EAHIIEP-AGFPTSDRHFRRAGMD-YLDQVTILRH 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + F+ R + + +L + E+ + +V ++ GRE G+ +E Sbjct: 60 DSWS----KFV---QWRKEADCRVILLTTKGVTPYLEQRYQSTDV-LLLGRESAGVPDEV 111 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A ++A + P+ P SLN++ A L+V E + + Sbjct: 112 AAAADARVLIPMQPKMRSLNVAMAAALVVGEALRQT 147 >gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 280 Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 LA ++A+ LN+ + G+ + FG E +GL + I + P++ SLN++ + Sbjct: 211 LALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDSLNVAASS 270 Query: 162 LLMVWE 167 + WE Sbjct: 271 AVAFWE 276 >gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657] gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 155 Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N ++L L+ P G+ ++ A D + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D +F ++TT + NNF + + + I+FGRE GL Sbjct: 63 SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107 Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 +E + + I P +N SLN+S V ++ +E + Sbjct: 108 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEAL 146 >gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] Length = 787 Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 32/187 (17%) Query: 11 SAKGPVIILVD----PQLGENIGMVARAMWNFNLTQLRLVNPRDG-------WPSEKARS 59 S PV++L+D PQ NIG + R+ F + + VN D + +E RS Sbjct: 502 SGSKPVVLLLDGIENPQ---NIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRS 558 Query: 60 SSANAD-CVIDSVRVFSNLKEAIADL---HFIYATTARNR-----------NNFKSVLA- 103 S + C I + + + E + + + TTA N+ FK + + Sbjct: 559 SRGAVEYCNISQLYLRRDAAEVLDEFVENGWEVVTTASNKLIDDNADNGIVEQFKPLKSL 618 Query: 104 PKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 K ++ +E R+ + + ++ G E G++ S IS P L SLN+SQA Sbjct: 619 TKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQAS 678 Query: 162 LLMVWEC 168 +++ EC Sbjct: 679 SIILGEC 685 >gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 296 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 234 GTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 282 >gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 170 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G ++R +LT L LV P G+ + A D I + Sbjct: 3 IVLVEPEIPGNTGNISRLCAAEHLT-LHLVEPL-GFSIDDKHLKRAGLDYWKFLDIHIHK 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F ++K+ + F Y TT +A V + + +V ++FG+E GL Sbjct: 61 NFESVKQMLKGKRFFYNTT--------------KAKHVYTDISYKEDDV-LVFGKETKGL 105 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EE+ L N + I P+ SLN+S AV ++ E + + Sbjct: 106 P-EELLLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQT 146 >gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] Length = 221 Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 52 WPSEKARSSSANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 WPS++ R+ ++ + V+V ++ + +A+ L + VLA +A Sbjct: 41 WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVKQL----------KQQKMQVLATHLSAD 90 Query: 110 VLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ R I I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 91 AVDFREIDYTLPTCILMGQEKTGITEEALALADRQIVIPMVGMVQSLNVSVACALILYE 149 >gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 286 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 228 VFGNEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLY 270 >gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 170 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D + + Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPM-GFPIDDRKMKRAGLDYWDKLDITYYD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTN 134 NL+E ++ + + + L K A V E F + N +FGRE GL Sbjct: 66 NLEEFMSKM------------DGQLYLISKFAEKVYVEENFATAGNHYFMFGREDKGLPE 113 Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 + + A S + P+N SLN+S V ++V+E + Sbjct: 114 DFMRAHSEKALRIPMNDEHVRSLNLSNTVCMLVYEAL 150 >gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] Length = 231 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 20/146 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ V WP+ + R SS+A ++ ++ V+ + +A+ Sbjct: 31 HNVSAIIRTADAVGVHQVHAV-----WPTSRMRTLVSSAAGSNSWVN-VKTHRTISDAVT 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141 L ++ +LA +A ++ R + + ++ G+E+ G+T E +AL++ Sbjct: 85 HL----------KDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEEALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE 167 I P+ + SLN+S A L+++E Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYE 160 >gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] Length = 181 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L D + N+G V R+ F +T + L P+ + ++ + +D + F Sbjct: 26 VVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGEDSVDW-KYFE 84 Query: 76 NLKEAIADLH----FIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + ++AI LH ++Y + N +S L + Q+ II G Sbjct: 85 HTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLD-------------TTQHYAIIMGN 131 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E G+ + LS+ + P SLN+S +++WE Sbjct: 132 EVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWE 171 >gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 150 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + +N G + R N+ + ++ P G+P+ A D +D + + + Sbjct: 3 IALYQPDIPQNTGTLLRFCACLNV-EAHIIEPA-GFPTSDRHFRRAGMD-YLDQITIVRH 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D + ++ + +L K L +R + +V ++ GRE G+ +E Sbjct: 60 ------DSWSKFEQWRKDADCRVILLTTKGVTPYLEQR-YQSTDV-LLLGRESAGVPDEV 111 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A ++A I P+ P F SLN++ A L+V E + + Sbjct: 112 AAAADARIVIPMQPGFRSLNVAMAAALVVGEALRQT 147 >gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] Length = 176 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+++++D NIG V R F + + L P + ++ A+ Sbjct: 17 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAE 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124 +D + +N EA+ +L +N + E +I+LNE + I+ Sbjct: 77 FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIV 127 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E I S+ I P SLN+S +++W+ Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170 >gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 216 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E+ G+++E + L++ +I P+ + SLN+S A L+++E Sbjct: 127 IVMGNEKDGVSSETVELADTVIIIPMQGMVQSLNVSVAAALILYE 171 >gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 281 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G IFG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 219 GTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC 3502] gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC 19397] gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall] gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra] gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch Maree] gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto] gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 155 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N ++L L+ P G+ ++ A D + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D +F ++TT + NNF + + + I+FGRE GL Sbjct: 63 SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107 Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 +E + + I P +N SLN+S V ++ +E + Sbjct: 108 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEAL 146 >gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 236 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 278 >gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] Length = 229 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 17/122 (13%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WP + R S++A ++ + SV+ + +A+A L + +LA + Sbjct: 52 WPGNRMRTMASTAAGSNSWV-SVKTHRTIGDAVAQL----------KGRGMQILATHLSD 100 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +A+ E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++ Sbjct: 101 SAVDFREIDYT-RPTCILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILY 159 Query: 167 EC 168 E Sbjct: 160 EA 161 >gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] Length = 229 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R SS+A ++ ++ V+ N+ +A+ L AR + L+ K A Sbjct: 52 WPGNRMRTMASSAAGSNSWVE-VKTHRNIGDAVGHL------KARGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITEEALRLADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] Length = 164 Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75 I+LV+P++ +N G + R T L LV P G+ E A D ++ VR ++ Sbjct: 5 IVLVEPEIPQNTGNIVRTCAATG-TVLHLVGPL-GFSIEDKYLKRAGLDYWDEADVRYYN 62 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N+ E Y +T + NN+ V ++ I+FG+E GL Sbjct: 63 NINEFFEKFPGKTFYYSTTKAVNNYCDVQFEDDSF--------------ILFGKETAGLP 108 Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169 EE+ N I P+ SLN+S +V ++++E + Sbjct: 109 -EELLRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEAL 145 >gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont] Length = 239 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 17/121 (14%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WPS + R S+SA ++ + V+ ++ +A+ L ++ VLA + Sbjct: 38 WPSVRMRTMVSASAGSNSWV-KVKTHRHIADAVRHL----------KDRGMQVLATHLSD 86 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A+ E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++ Sbjct: 87 KAVDFREIDYT-KPTCILMGKEKTGITAEALALADRDIIIPIVGMVQSLNVSVASALILY 145 Query: 167 E 167 E Sbjct: 146 E 146 >gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 20/146 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + Q+ V WP + R S++A ++ + SV+ ++ A++ Sbjct: 31 HNVSAVIRTADAVGVHQVHAV-----WPGKTMRTMVSTAAGSNSWV-SVKTHPDISSAVS 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141 L + +LA ++ ++ R I + I+ G+E++G+T E +AL++ Sbjct: 85 TL----------KAEGMQILATNLSSTAVDFREIDYTRPTCILMGQEKYGITAEALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE 167 I P+ + SLN+S A L+++E Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYE 160 >gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] Length = 181 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 16/156 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L D + N+G V R+ F ++ + L P + ++ A+ I + R F+ Sbjct: 27 VVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAEESI-AWRYFA 85 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +EA+ +L F+Y+ + K + L R Q ++ G E G Sbjct: 86 TAEEAVRNLQTKGFFVYSIEQAEGST-------KLHHLTLERR----QKYAVVLGNEVKG 134 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + LS+ + P SLN+S A ++VWE Sbjct: 135 VHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWE 170 >gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 283 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 222 VFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 264 >gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] Length = 152 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A D I Sbjct: 3 IVLVEPEIPANTGNIARTCAATGAT-LHLVRPL-GFYTDDRHLRRAGLDYWHLVKIYYHD 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F++L A D F + TT R + V P + +V FG+E GL Sbjct: 61 SFADLCRAYPDACF-FLTTTRAERWYTQVRYPPGSFLV--------------FGKESTGL 105 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + A + I P+ P SLN++ AV ++++E + Sbjct: 106 PEEILQAFPDRWIRIPMVPGARSLNLANAVAIVLYEALRQ 145 >gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] Length = 160 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N ++L L+ P G+ ++ A D + Sbjct: 10 IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWKYLDLTIYE 67 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D +F ++TT + NNF + + + I+FGRE GL Sbjct: 68 SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 112 Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 +E + + I P +N SLN+S V ++ +E + Sbjct: 113 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEAL 151 >gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159] gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159] Length = 182 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L PQ+ N G +AR N T L ++ P G+P + + A D D + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-YWDKL----- 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129 D+HF + N+F ++ + K I + +S +N +FGRE Sbjct: 72 ------DVHFYDSL-----NDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGRED 120 Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169 GL E + S + P+N SLN+S V ++V+E + Sbjct: 121 KGLPEEFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEAL 162 >gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 279 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|289803175|ref|ZP_06533804.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELLSFLDYLE 200 ++ NP + SLN++ AV ++ +E + + E + TP +L F +LE Sbjct: 4 VAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLE 63 Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 64 QTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 110 >gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] Length = 229 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 12/146 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R+ + + V P G ++ SS++ + +++AIA Sbjct: 31 HNLSAIVRSADAVGIHHIHSVWPEGG---KRLTSSTSGGSKNWTENHIHHTVEDAIA--- 84 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144 T R+R +LA + ++ R I + II G+E++G++++ +AL++ I Sbjct: 85 -----TIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQALALADQHI 139 Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170 P+ + SLN+S A ++++E + Sbjct: 140 IIPMVGMVQSLNVSVAAAIILYEAQK 165 >gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] Length = 187 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A D I+ Sbjct: 38 IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 95 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F L+ + + YATT + + I + F ++FG+E GL Sbjct: 96 SFEELQALYPEGRYFYATTKATK---------RYMDIEYQDGDF------LVFGKETKGL 140 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A + I P+ SLN+S + +MV+E + Sbjct: 141 PPELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 178 >gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 189 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 23/169 (13%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 + + + K P+I+++D NIG V R F + ++ L P + + ++ A Sbjct: 18 EFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGAT 77 Query: 65 -----DCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + V D++ + LKE I A A NNFK + G Sbjct: 78 ETVVWEHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEI---------------G 122 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +IFG E G+ + ++ S+ +I P SLNIS + +++W+ Sbjct: 123 EKIAVIFGNEVKGVQQKVVSASDGVIEIPQAGSKHSLNISVSTGVILWD 171 >gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17] gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17] Length = 178 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/166 (19%), Positives = 72/166 (43%), Gaps = 17/166 (10%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+++++D N+G V R+ F + + L P+ + ++ + Sbjct: 16 EFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +D + F+ +EA+ AD +F+Y+ + L ++ GQ Sbjct: 76 DSVDW-KYFATTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETEQ-----------GQRY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FG E G++ + L + + P SLN+S +++WE Sbjct: 124 AVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169 >gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] Length = 164 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 26/160 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 +IL++P++ +N G + R T+L L+ P G+ + A D D V ++ Sbjct: 3 VILLEPEIPQNTGNIGRTCCATG-TKLHLIEPM-GFRINEKNLKRAGMDYWDDLDVTIYD 60 Query: 76 NLKEAIADLH---FIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + K+ + D H I+ T + + + V P + I+FG+E G Sbjct: 61 SFKDFM-DQHPGIKIWMATTKAPHRYTDVEFGPDDY---------------IMFGKESAG 104 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 + EEI + N I P+NP SLN++ +V ++++E + Sbjct: 105 IP-EEILVDNEDTCIRIPMNPEIRSLNLANSVAIVLYEAL 143 >gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] Length = 230 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%) Query: 52 WPSEK--ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 WP+ + R SSA V+ +++ +AIA L ++N + L+ + A+ Sbjct: 52 WPTTQMYTRLSSAAGSNSWVQVKTHTHISDAIAHL------KSQNMQILATHLS--DNAV 103 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 104 DFREIDYT-RPTCILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 254 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GLT +E+AL++A++ P+ SLN++ A + ++ Sbjct: 202 VFGTEAQGLTADELALADAVVRVPLRGHAESLNVAMAATVCLY 244 >gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115] Length = 184 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D D + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLD-YWDKLNI--T 76 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTNE 135 E++ D F+ R L K A V +E F+ + +FGRE GL E Sbjct: 77 YYESLGD--FMEQMDGR------LYLISKFAEKVYSEEKFAAEGSHYFMFGREDKGLPEE 128 Query: 136 EIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECM 169 + + P+N SLN+S AV ++V+E + Sbjct: 129 FMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEAL 164 >gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C] gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C] Length = 287 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 227 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 269 >gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] Length = 261 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E GL+N I+L++ ++S P+ P SLN++ A L+++E I Sbjct: 209 ILLGNEGSGLSNSLISLADNLVSIPLGPGVESLNVAIATALLLYEAKRQKI 259 >gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 287 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 227 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 269 >gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 279 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 154 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P++ N+G + R + N +L L+ P + A D D + VF Sbjct: 4 IVLLEPRIPGNVGTIGRLCFALN-CKLHLIKPYGFGEITEKEVRRAGLDYWYD-LEVFE- 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGLTN 134 E I D ++N N + LA + V + F NVG FGRE GL Sbjct: 61 -YENIEDF------WSKNPFNDRHFLATTKTKNVYFDAKF---NVGDYFYFGREDAGLPE 110 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ S+ I+ P+ SLNI+ +V ++ +E + + S Sbjct: 111 DLLSKSSHTCITIPMTNEARSLNIANSVSIVAYEALRQNFTS 152 >gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1] gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1] Length = 288 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 228 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 270 >gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus] Length = 308 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 246 GTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 294 >gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 229 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 271 >gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 24/159 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ +N G +AR T L LV P G+ A D D V V Sbjct: 3 IVLVEPEIPQNTGNIARTC-ALTKTALHLVKPL-GFSLADRFLKRAGLD-YWDKVEVQLW 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F +L EA F ATT R + V P+++ +V FGRE G Sbjct: 60 ESFGDLLEANPGAAFYLATT-RAGQAYHQVSYPQDSWLV--------------FGRESSG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L + + + I P+ + SLN+S +V ++++E + Sbjct: 105 LPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEAL 143 >gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 224 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +N + G E+WGL++E I+ + I P+ + SLN+S A ++++E + + S Sbjct: 113 AENTCFVLGAEKWGLSDELISKVDESIFIPMTGMVQSLNVSVAASILLFEAIRQRQIKS 171 >gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 267 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 N+ IIFG E G++N ++N II+ P+ SLN+S A+ ++++E Sbjct: 209 NLAIIFGSENKGISNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIYE 256 >gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N] gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 156 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 21/157 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +ILV P++ N G R N QL LV P G+ + R A D ++V Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDTRLRRAGLDYHEWQPMKVHD 61 Query: 76 NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 +L A+A AT A F + + AA + +R +F +FGRE GL Sbjct: 62 DLPAALA------ATGAPPERIFALTTQGARSAAGMQYQRGDVF-------VFGRETAGL 108 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E +AL + P+ P SLN+S AV + V+E Sbjct: 109 SPEHVALFAPGQRLRLPMRPGQRSLNLSNAVAVTVFE 145 >gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22] gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22] Length = 175 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%) Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 14 AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 A+ +D + +N +A+ +L +N + E +I+L+E ++ + Sbjct: 74 AEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169 >gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 279 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|331217471|ref|XP_003321414.1| hypothetical protein PGTG_02456 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300404|gb|EFP76995.1| hypothetical protein PGTG_02456 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1002 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 28/110 (25%) Query: 50 DGW----PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP- 104 D W P EK +S++ N+ C + LK IAD H ++ T +N NN L P Sbjct: 848 DQWDKLPPREKLKSAAVNSRC--------TQLKYWIADQHVVFCTMKKNENNCVVALKPN 899 Query: 105 -KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 K + ++NE IF R +T +AL++ ++ + PL P Sbjct: 900 LKASYGIINE----------IFQHSR--VTPSNVALTDTWVA--IRPLIP 935 >gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 153 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 15/154 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ +N G +AR N T L L+ P G+ + + A D +S Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTNST-LHLIKPM-GFKIDDKQVKRAGLD-------YWSE 55 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK ++H Y + + + LA + +E F + I+FGRE G+ EE Sbjct: 56 LK---LEMHESYEEFMKKYGDKRIFLATTHGGVHYDEVSFKEGDF-IMFGRESSGVP-EE 110 Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169 + S+ I P + SLN+S V ++ +E + Sbjct: 111 VHNSHEGIRVPMIKTSTRSLNLSNTVAIVAYEAL 144 >gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] Length = 261 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 30/179 (16%) Query: 1 MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 + Y + + S+K + + + DP N G + R F + + +N D + S+ R Sbjct: 105 IVNYIEEKKISSKNIICLENVSDPG---NFGTIIRTANAFGINDILTINCVDKYNSKVLR 161 Query: 59 SSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 ++ DC I+ + KE + + + +TT + F L Sbjct: 162 ATMGAIFRTNIIDCKIEKI------KELQSGGYRLISTTLSKNSKF------------LE 203 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E F G+N+ ++ G E G++ E + +SN + ++ SLN+S A +++++ +N Sbjct: 204 EFTFDGKNI-VVMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMYKIFKN 261 >gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 239 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 281 >gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] Length = 288 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEE 136 K+AIA+L + TA LA + ++ +++ + + + +I G E GL NE Sbjct: 200 KQAIAELKKLGYKTA--------ALALTDDSVSIDDSELMKEEKLAVILGNEGEGLENET 251 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 IAL + + P+ SLN++ A + W+ Sbjct: 252 IALCDYTVKIPMTHGVDSLNVAAASAVAFWQ 282 >gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX] gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX] Length = 275 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V IFG E WGL E +AL++ +S P+ SLN++ A + ++ Sbjct: 215 VAWIFGNEAWGLPQETLALADETVSVPIYGRAESLNLATAAAVCLY 260 >gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] Length = 156 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR ++L LV P SEK S ++V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTC-VLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYEN 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135 L+E F+ +T K LA + +E + ++ I+FG+E GL Sbjct: 64 LEE------FLESTKG-----CKYYLATTKGKHFYHEVKYEDESY-ILFGKESAGLPQWL 111 Query: 136 EIALSNAIISFPVNPLFP--SLNISQAVLLMVWECME 170 + I P+N + SLN+S +V ++V+E ++ Sbjct: 112 REKYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALK 148 >gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503] gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503] Length = 243 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 31/170 (18%) Query: 8 LQNSAKGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSS 60 L+N GP+++L DPQ NIG + R F+ + Q R P G A+++ Sbjct: 90 LENGETGPLLVLDQITDPQ---NIGALFRLAAAFSAKAVIAQDRRTPPLGG---PLAKAA 143 Query: 61 SANADCV--IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + +CV I V + L EAI + H I+ + + + A+VL Sbjct: 144 TGAVECVPFIPVVNISRAL-EAIREKHIPIFGLAGEGALSLRDTAPTRTCALVL------ 196 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E GL A+ + +++ P++P SLN++ A + ++ Sbjct: 197 --------GAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYH 238 >gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] Length = 178 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+++++D N+G V R+ F + + L P+ + ++ + Sbjct: 16 EFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120 +D + F+ +EA+ AD +F+Y+ + E + L GQ Sbjct: 76 DSVDW-KYFATTEEAVNQLKADGYFVYS------------IEQVEGSTKLQRLETGQGQR 122 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FG E G++ + L + + P SLN+S +++WE Sbjct: 123 YAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169 >gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] Length = 177 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + ++K P+++++D N+G V R+ F + + L PS + ++ A+ Sbjct: 16 EFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 75 Query: 66 CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 DSV + F+ +A+ +LH N +V A ++ + G+ + Sbjct: 76 ---DSVTWKYFAETSDAVDELH-------ANGTKVFAVEQVANATMLQSLETKGGERYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + G E G+ + + + P SLN+S A ++VWE Sbjct: 126 VLGNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWE 169 >gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 281 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 219 GTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267 >gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018] gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018] Length = 154 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P++ N+G + R + N +L L+ P + A D D + VF Sbjct: 4 IVLLEPRIPGNVGTIGRLCFALN-CKLHLIKPYGFGEITEKEVRRAGLDYWYD-LEVFE- 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGLTN 134 E I D ++N N + LA + V + F NVG FGRE GL Sbjct: 61 -YENIEDF------WSKNPFNDRHFLATTKTKNVYFDAKF---NVGDYFYFGREDAGLPE 110 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ S+ I+ P+ SLNI+ +V ++ +E + + S Sbjct: 111 DLLSKSSHTCITIPMTNDARSLNIANSVSIVAYEALRQNFTS 152 >gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 223 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 V ++ G E+WG++ E AL++ I P+ + SLN+S A ++++E Sbjct: 114 VAVLLGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEA 161 >gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CMR15] Length = 156 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A + ++A T R F + P + +FG E Sbjct: 62 SWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEA 146 >gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 308 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 248 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 290 >gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 157 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 31/163 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-------VID 69 I+LV+P++ N G +AR + T L LV+P G+ + A D D Sbjct: 11 IVLVEPEIPPNTGSIAR-LCGATDTVLDLVHPL-GFQIDDKHLKRAGLDYWPHVRINHWD 68 Query: 70 SVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S+ F L++A LHF+ T R+ EA +R +IFG+E Sbjct: 69 SLDAF--LQQADERHLHFLTTKTKRSYT---------EARFCPGDR--------LIFGKE 109 Query: 129 RWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169 GL E + L S+ ++ P+ NP SLN++ A ++++E + Sbjct: 110 TKGLPEEILTLYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEAL 152 >gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] Length = 186 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + S K P+I+++D N+G V R+ F + + L P+ + ++ A+ Sbjct: 16 EFKQSRKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTALGAE 75 Query: 66 CVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +D + F +EAI L +++Y+ + L+ + A I + S + Sbjct: 76 DSVDW-QYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQT--SEKRY 132 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ G E G+ + LS+ + P SLN+S +++WE Sbjct: 133 AVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWE 178 >gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 15/120 (12%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R S++A ++ + SV+ + EA++ L + VLA +A Sbjct: 52 WPGARMRTMASTAAGSNSWV-SVKTHQTIGEAVSHL----------KGRGMQVLATNLSA 100 Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ R I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 101 KAVDFREIDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 283 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 + L P+ ++ L + G+ V ++ G E GLT E I ++ + P++P SLN+ Sbjct: 214 AALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271 >gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357] Length = 229 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMTGMVQSLNVSVASALILYE 160 >gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 164 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVI-DS 70 I+LV+PQ+ +N G + R N T L L+ P +KA + + D V+ +S Sbjct: 4 IVLVEPQIPQNTGTIGRLCVNLGAT-LHLIKPLGFDIDDKAVKRAGLDYWKHLDLVVWES 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F LKE D H +TT + F + + I+FG E Sbjct: 63 FEAF--LKEHPIDEHSYMSTTKTDNLYFNAPFKKGDY---------------ILFGSETK 105 Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G+ +E++ L++ I+ P+ SLN+ +V +++++ + + EK Sbjct: 106 GI-DEKVLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQNYEGFEK 154 >gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 206 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R S++A ++ + V+ + +A+A L R + L+ K A Sbjct: 29 WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 79 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 80 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 138 >gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519] gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii] Length = 151 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 22/158 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76 +LV+P++ +N G + R N +L L+ P G+ ++ + A D + + S+ + + Sbjct: 1 MLVEPEIPQNTGNIIRTCACIN-ARLHLIKPM-GFSMDEKQLKRAGLDYMDLVSINYYDS 58 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E I D++ Y T + + N E+ IV FG+E GL+ Sbjct: 59 FEELIEDKDINKFYFFTTKAKKNHTEATYEDESYIV--------------FGKETKGLSQ 104 Query: 135 EEIALS-NAIISFPVNPL--FPSLNISQAVLLMVWECM 169 E ++L+ N + P+ + SLN+S +V + +E + Sbjct: 105 EILSLNPNNNVRIPMLNMDRVRSLNLSNSVAIAAYEAI 142 >gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24] gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24] gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24] Length = 282 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 222 VFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLY 264 >gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] Length = 230 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 22/147 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + Q+ + WP+ + + SS+A ++ + V+ +++A+ Sbjct: 31 HNVSAVIRTADAVGVHQVHAI-----WPTSRMKTLVSSAAGSNSWV-QVKTHRTIRDAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L + VLA E A+ E ++ + I+ G+E+ G+T+E + L+ Sbjct: 85 HL----------KAEGMQVLATNLSEHAVDFREIDYT-RPTCILLGQEKTGITDEALKLA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167 + I P+ + SLN+S A L+++E Sbjct: 134 DRDIIIPMTGMVQSLNVSVASALILYE 160 >gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 158 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 11/153 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P G+ A D + +++ Sbjct: 5 IALFQPDIAGNTGTILRLSACFGL-HVHIIEP-AGFNLSDRNLKRAGMDYL-----EYAS 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I HFI+ NR + +L +A + + +V ++FGRE G+ N Sbjct: 58 LERHIDWPHFIHTMKQFNR---RLLLLSTKAETCYTQICYQENDV-LLFGRESAGVPNYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 N + P+ P SLN++ +V + E + Sbjct: 114 YEAVNETLKIPMQPYARSLNLAMSVAITTGEAL 146 >gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 282 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 222 VFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLY 264 >gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans CH34] gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34] Length = 156 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL LV P G+P E AR A D ++RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAGLDYHEYATMRVHE 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T F V AP + +FG E Sbjct: 62 SWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL E E S I P+ P SLN+S V ++V+E Sbjct: 107 GLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEA 146 >gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] Length = 175 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 11/165 (6%) Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 14 AEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 A+ +D + N +A+ +L R + E +I+L+E + + Sbjct: 74 AEFTVDW-KYVDNAVDAVDNL--------RKAGYMVYSVEQAEGSIMLDELELDKSKKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169 >gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147 YA +N A +A V E F+ Q +G+I G E G+ IAL + +I P Sbjct: 162 YAIKTLKEHNITIYGAEAQAKDVFWESDFT-QPLGLIVGSEGKGIRQTVIALCDKVIKIP 220 Query: 148 VNPLFPSLNISQAVLLMVWECM 169 + SLN+S A L+ +E + Sbjct: 221 MRGTINSLNVSVASALITFEVL 242 >gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +N + G E+WGL+++ I+ + I P++ + SLN+S A ++++E + + Sbjct: 114 ENTCFVLGAEKWGLSDQLISKVDESIFIPMSGMVQSLNVSVATSILLFEAI--------R 165 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGY 208 K ++ KGE LS +Y E +L E Y Sbjct: 166 QRKSKSLLPLKGEGLSAEEY-EKTLFEWSY 194 >gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] Length = 178 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 11/166 (6%) Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P A + K PV +++D + +N+G R F + ++ L P+ + ++ Sbjct: 12 PSAGEFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTA 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120 A+ + + F+ + IA L R + V+ E A++L+E R GQ Sbjct: 72 LGAELTV-AWDYFAATTDCIAAL--------RAQGYLIYVVEQVEGAVMLDEFRPRPGQK 122 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++FG E G+ E + ++ I P S+N+S A +++W Sbjct: 123 YALVFGNEVDGVAQEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLW 168 >gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1] gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1] Length = 232 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITEEALALADRKIVIPMVGMVQSLNVSVACALILYE 160 >gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 167 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLEIHFYD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTN 134 NL + ++ + + L K A V +E + SG++ +FGRE GL Sbjct: 63 NLADFLSQM------------KGQVYLISKFAEKVYSEANLASGEDQYFLFGREDKGLPE 110 Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEAL 147 >gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] Length = 175 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 11/165 (6%) Query: 5 APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 14 AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 A+ +D + +N +A+ +L +N + E +I+L+E + + Sbjct: 74 AEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELELDKTRKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169 >gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 219 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 36/75 (48%) Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 ++ NFK A V I Q I+ G ERWG+++ L + I P+ + Sbjct: 90 HQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGAERWGVSDTAAELVDGHIIIPMLGMVQ 149 Query: 154 SLNISQAVLLMVWEC 168 SLN+S A ++++E Sbjct: 150 SLNVSVAAAVILFEA 164 >gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] Length = 229 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G + G E+WGL++ AL + + P+ + SLN+S A +++E + + Sbjct: 112 FTGP-CAFVLGAEKWGLSDAATALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAA 170 Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRP---VEKKKKMLDDL 222 + + P + L F Y +++ R RP + + ++L+DL Sbjct: 171 GRVPHQGEGIPPDHYDSLLFEWAYPQVASWCREQGRPYPALREDGEILEDL 221 >gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 256 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q II G+E+ G T E IA+++ I P+ + SLN+S A ++++E Sbjct: 117 QPTAIILGQEKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYE 165 >gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78] gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78] Length = 297 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +R G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 233 DRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 286 >gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] Length = 183 Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 16/172 (9%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + + K P+I+++D N+G V R+ F + + L P + ++ + Sbjct: 16 QFKEAEKLPLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGE 75 Query: 66 CVIDSV--RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 DSV + F N ++A+ +LH ++Y+ + + L E I + + Q Sbjct: 76 ---DSVEWKYFKNTEDAVNELHKKGYYVYSI---EQVEGSTKLQNLEVDIRQHN---TDQ 126 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I G E G+ + + +S+ + P SLN+S +++WE +N Sbjct: 127 HYAMIMGNEVKGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKN 178 >gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] Length = 229 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E+WGL+ E L + I+ P++ + SLN+S A ++++E + V+ Sbjct: 119 LLGAEKWGLSQEAAELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVA 170 >gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 305 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 +P+ +VL +R F+ Q ++FG E GL + ++ I+S P+ SLN++ + Sbjct: 231 SPRTLPVVLAQRTFAQQPTCVLFGNEARGLETGMLEQADDIVSIPIYGKAESLNLATSAS 290 Query: 163 LMV 165 +M+ Sbjct: 291 IML 293 >gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 175 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 15/165 (9%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + + K P+++++D + N+G V R F L + L P + ++ A Sbjct: 11 QFRAADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGAT 70 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNERI-FSGQNVG 122 ++ + F+ EA+A L + +V+A ++A +I+L++ I S + + Sbjct: 71 ETVEW-QYFATTTEAVAAL----------QEAGYTVMAVEQAVNSIMLDQFIPASDKPLA 119 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +IFG E G+ E + + I P + + SLNIS + ++VW+ Sbjct: 120 LIFGNEVSGVDAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVWD 164 >gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 250 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q II G+E+ G T E IA+++ I P+ + SLN+S A ++++E Sbjct: 111 QPTAIILGQEKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYE 159 >gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 229 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R S++A ++ + V+ + +A+A L R + L+ K A Sbjct: 52 WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 262 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E GL+N IAL++ ++S P++ SLN++ A L+++E I +S Sbjct: 209 ILLGNEGSGLSNSLIALADELVSIPLSQGVESLNVAIATALLLYEAKRQKIFNS 262 >gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76 + DP N+G + R+ FN + + + P+E S++ A +I ++V +N Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ +LH + F ++ E L E FSG+ V ++ G E GL + Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAAL-EGTFSGEKVALVLGSEGKGLRQKT 258 Query: 137 IALSNAIISFPVNPLFPSLNIS 158 NA+ + SLN+S Sbjct: 259 RETVNALARLDMPGAIKSLNVS 280 >gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 229 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R S++A ++ + V+ + +A+A L R + L+ K A Sbjct: 52 WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 309 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 242 GGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 290 >gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R S++A ++ + V+ + +A+A L +R + L+ K A Sbjct: 52 WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KSRGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] Length = 229 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WPS + R S++A ++ + V+ + +A+ L + +LA + Sbjct: 52 WPSSRMRTMASAAAGSNSWV-QVKTHRTIADAVGHL----------KGQGMQILATHLSD 100 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AI E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++ Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILY 159 Query: 167 E 167 E Sbjct: 160 E 160 >gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] Length = 228 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 46/201 (22%) Query: 52 WPSEKARS---SSANA---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99 WP EK R+ +SA A D V D+VR + + + + N +F+ Sbjct: 52 WPDEKMRTLSHTSAGARNWVEVETHDTVADAVRTLKS-----QGMQVLATNLSENAVDFR 106 Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + K AI+L G E+ G+T + + ++ I P+ + SLN+S Sbjct: 107 DIDYTKPTAIIL--------------GGEKHGITQDALTEADQDIIIPMVGMVQSLNVSV 152 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKK 217 A L+++E + +++ A E + + L ERG+ V KKK+ Sbjct: 153 ASALILFEAQRQ---RQNAGLYDRDVSALPEETIHRI------LFERGHPVLAKVAKKKR 203 Query: 218 M----LDDLYSIFIRPELMRE 234 + LDD I E +E Sbjct: 204 LPYPPLDDQGQIVATEEWWQE 224 >gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708] gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708] Length = 270 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E GL+++ A+++ + P+NP SLN++ A LM++E I Sbjct: 215 ILLGNEGAGLSDDLAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQKI 265 >gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545] Length = 447 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV + N+G +ARA F LRLV PR + + S++ A ++ V+ Sbjct: 142 AVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHGAGVYD 201 Query: 76 NLKEAI 81 ++++A+ Sbjct: 202 DVEDAL 207 >gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74] gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74] Length = 270 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +R G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 206 DRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 259 >gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355] Length = 167 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +PQ+ +N G +AR N + L ++ P G+P + + A D + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLDITYYD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTN 134 +L++ + + + + L K A V +E F+ ++ +FGRE GL Sbjct: 63 SLEDFMEQM------------DGRLYLISKFAEKVYSEENFAAESSHYFMFGREDKGLPE 110 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169 E + + P+N SLN+S AV ++V+E + Sbjct: 111 EFMRRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEAL 147 >gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] Length = 260 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V ++ G E GLT+E IA N+ + P+ SLN A +++W E S+ Sbjct: 207 GVCVVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260 >gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] Length = 155 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N +L L+ P G+ ++ A D ++ Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN-CKLHLIKPL-GFSLDEKHLKRAGLDYWKYLDLEVYE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D F ++TT + +NF + KE I+FGRE GL Sbjct: 63 SYEELREKYKDSTFYFSTT--HGDNFYHEVEFKEGDF-------------IVFGRESCGL 107 Query: 133 TN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + E I +N SLN+S V ++ +E + Sbjct: 108 PDSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEAL 146 >gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 260 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V ++ G E GLT+E IA N+ + P+ SLN A +++W E S+ Sbjct: 207 GVCVVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260 >gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] Length = 176 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 24/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P++ N G +AR+ N T+L L+ P SEK +A V+S+ Sbjct: 3 IVLLEPEIPANTGNIARSCVATN-TRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYSD 61 Query: 77 L-----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + K A H +ATT + + P + I+FG+E G Sbjct: 62 INDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDY---------------IMFGKESAG 106 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169 + EEI N I P+ SLN+S +V ++++E + Sbjct: 107 IP-EEILSENEDGCIRIPMWGDIRSLNLSNSVAIILYEAL 145 >gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 269 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%) Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVI 68 S K P++++ + P+ NIG + R ++ + + NP+ D + RSS CV Sbjct: 113 STKKPLLLVAEAPEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSS---VGCVF 169 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + + + D F+ A N S A A+ E FS + I+ G E Sbjct: 170 -TVPIATGTTAEVID--FLKA------KNISSYCAALTASKPYYEVSFS-EASAIVVGTE 219 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GLT+E + S I P+ + S+N+S A ++++E +++ Sbjct: 220 DQGLTDEWLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRVMT 266 >gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] Length = 229 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WPS + R S++A ++ + V+ + +A+ L + +LA + Sbjct: 52 WPSSRMRTMASAAAGSNSWVQ-VKTHRTIADAVGHL----------KGQGMQILATHLSD 100 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AI E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++ Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILY 159 Query: 167 E 167 E Sbjct: 160 E 160 >gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] Length = 220 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+ D N+ + R + + +N D +P+ S ++ + S Sbjct: 23 TILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGSDKWVFLHS---HP 79 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+K I L R NF A + I Q I+ G E+WG++ E Sbjct: 80 NIKTGINHL---------KRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGAEKWGVSEE 130 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 L + I P+ + SLN+S A ++++E Sbjct: 131 AANLVDGHIIVPMLGMVQSLNVSVAAAVILFEA 163 >gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 231 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R + Q+ V WP+ + R+ ++A + V V ++ H Sbjct: 31 HNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNNWVNVKTH--------H 77 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144 I T + VLA ++ ++ R + + ++ G+E+ G+T+E +AL++ I Sbjct: 78 TISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALALADQDI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168 P+ + SLN+S A L+++E Sbjct: 138 IIPMIGMVQSLNVSVASALILYEA 161 >gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 225 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q II G+ER G++ + +AL++ I P+ + SLN+S A L+++E Sbjct: 98 QPTCIILGQERTGISKQALALADHNIHIPMMGMVQSLNVSVASALILYE 146 >gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 159 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+L P++ +N G +AR N +L L+ P G+ ++ A D ++ Sbjct: 9 IVLFQPEIPQNTGNIARTCVLTN-CKLHLIKPL-GFSLDEKHLKRAGLDYWKYLDLEVYE 66 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L+E D F ++TT + +NF + KE I+FGRE GL Sbjct: 67 SYEELREKYKDSTFYFSTT--HGDNFYHEVEFKEGDF-------------IVFGRESCGL 111 Query: 133 TN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + E I +N SLN+S V ++ +E + Sbjct: 112 PDSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEAL 150 >gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] Length = 229 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WP EK R S +A ++ ++ V + +A+ R VLA + Sbjct: 41 WPEEKMRMLVSPAAGSNSWVN-VETHPTITDAVGAF----------RTQGMQVLATHLSD 89 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A+ E ++ + II G+E+ G++ + IAL++ I P+ + SLN+S A L+++ Sbjct: 90 KAVDFREIDYT-RPTCIIMGQEKTGISQDAIALADQDIIVPMMGMVQSLNVSVASALILY 148 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSF 195 E + N E + ++L F Sbjct: 149 EAQRQRQAAGMYNRTESTLTEEEQQILLF 177 >gi|313148723|ref|ZP_07810916.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137490|gb|EFR54850.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 612 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM------VWECMENSIVSSEKNVKEQN 184 GL +EE A S +++ P +P F A +M V+ C NS+VS E K +N Sbjct: 536 GLPHEEFAFSKNMLN-PASPHFGFFTFPNAFGMMTPENEVVFNCESNSVVSDEGEHKGEN 594 Query: 185 TPATKGELLSFLD 197 P K L D Sbjct: 595 LPKAKAYLQKLYD 607 >gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 296 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 243 VFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 285 >gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 176 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+ +++D + NIG V R F + + L P + ++ A+ Sbjct: 17 EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124 +D + +N EA+ +L +N + E +I+LNE + I+ Sbjct: 77 FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIV 127 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E I S+ I P SLN+S +++W+ Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170 >gi|255010916|ref|ZP_05283042.1| putative sulfatase [Bacteroides fragilis 3_1_12] Length = 586 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM------VWECMENSIVSSEKNVKEQN 184 GL +EE A S +++ P +P F A +M V+ C NS+VS E K +N Sbjct: 510 GLPHEEFAFSKNMLN-PASPHFGFFTFPNAFGMMTPENEVVFNCESNSVVSDEGEHKGEN 568 Query: 185 TPATKGELLSFLD 197 P K L D Sbjct: 569 LPKAKAYLQKLYD 581 >gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] Length = 242 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 21/162 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL Q N+G + R+ F Q+ + ++KA S+ A +D VR Sbjct: 98 VLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR--D 155 Query: 76 NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L I +L + AT+ N ++ + + + A V+ G E G Sbjct: 156 DLHHVIPELQKLGVRVIATSLHNASSIDDIKSTDKMAFVM--------------GNEGNG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +E IA+S+A + P++ + SLN+ A ++++ E S+ Sbjct: 202 VRDETIAMSDASLYIPIDTM-ESLNVGVAAGIVMYTFKEVSL 242 >gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] Length = 234 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%) Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 IIFG E+ G+T E +A+++ I P+ + SLN+S A L+++E Sbjct: 115 AIIFGGEKNGITAEALAMADQDIIIPMVGMVQSLNVSVASALILYEA 161 >gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] Length = 229 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106 WPS + R S++A ++ + V+ + +A+ L + +LA + Sbjct: 52 WPSSRMRTMASAAAGSNSWV-QVKTHRTIADAVGHL----------KGQGMQILATHLSD 100 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AI E ++ + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++ Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILY 159 Query: 167 E 167 E Sbjct: 160 E 160 >gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 247 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 26/152 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76 + DP+ NIG + R+ +F++ L +V R +PS+ A + C ++ + +F SN Sbjct: 105 VTDPR---NIGSLIRSASSFHIDGL-IVKERQ-FPSDSKLMYKAASGC-MEHINIFEVSN 158 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + +L ++Y AR +F + + G+NV ++FG E +G+ Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKDFTEIK-------------WEGKNV-LLFGSEGFGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ + +N SLNIS + ++ Sbjct: 205 REHTGKYTDFFVKIDINKDVESLNISNSAAIV 236 >gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 259 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%) Query: 11 SAKGPVIILV-----DPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANA 64 +A GP ++V DP N+G + RA +T + + D + + RS+ + Sbjct: 105 AAPGPAFLMVLENIQDPG---NLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSV 161 Query: 65 DCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 V + + + ++LK A +YA RNN++ KE V + G Sbjct: 162 FRVPFVYTEDLPASLKALKAGGVRLYAAHLNGRNNYE-----KEDYTV---------DTG 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + G E GLT+E AL++A + P+ SLN + A ++++E Sbjct: 208 FLVGNEANGLTDETAALADACVKIPMKGKVESLNAAVAASVLMFEA 253 >gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] Length = 247 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 26/152 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76 + DP+ NIG + R+ +F + L +V R +PS+ + + C ++ + +F SN Sbjct: 105 VTDPR---NIGSLIRSAASFKIDGL-IVKERH-FPSDSKLMYKSASGC-MEHLNIFKVSN 158 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + +L ++Y AR NF V + G+NV ++FG E +G+ Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKNFTDVK-------------WEGKNV-LLFGSEGFGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ + +N SLNIS + ++ Sbjct: 205 KEHTGKYADFFVKIDINKDIESLNISNSAAIV 236 >gi|167945591|ref|ZP_02532665.1| RNA methyltransferase, TrmH family, group 1 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 92 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 163 LMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222 L+ +E S+ ++K ++ A+ L F +L +LE+ G+ P + K+L L Sbjct: 2 LLAYEVYLASLEEADKPLRAPREVASAEMLEGFHTHLAQALEDIGFADP-RQSDKLLRRL 60 Query: 223 YSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++F R R+E+ +LRGI+S R+S RR Sbjct: 61 RALFHRARPDRDEINILRGILSAAQ--GRKSMRR 92 >gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 178 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 13/164 (7%) Query: 7 QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+++++D NIG V R F + + L P + ++ A+ Sbjct: 19 EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAE 78 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGI 123 +D + N EA+ +L RN + E +I+LNE +G+ I Sbjct: 79 FTVDW-KYVDNAVEAVDNL--------RNGGYTVYSVEQAEGSIMLNELTLDRTGK-YAI 128 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + G E G+ E I S+ I P SLN+S +++W+ Sbjct: 129 VMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 172 >gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum gryphiswaldense MSR-1] Length = 248 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDS 70 AK P++IL N+G +AR M F L +L + + P PS+ A + +D Sbjct: 96 AKEPLVILDGIGNPHNLGAIARTMAFFGLGRLIVSDHPEQALPSDAAFRIAEGGLEWVDV 155 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRE 128 +V +NL +A+ L Y +S+ + FS + + ++ G E Sbjct: 156 YQV-ANLGKALPRLKPHYQVIGTALGAHRSM-----------KDTFSSNDKPLALVLGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 GL +A + I++ P + SLN+S +++ Sbjct: 204 EEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILI 240 >gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis] Length = 365 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P+ NIG V RA NF + +V+ R + +S N+ V+ S+R+ Sbjct: 26 VVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTSCNSH-VMHSMRLVPT 84 Query: 77 LKEAIADLHFIYATTARN 94 L +A+AD T R+ Sbjct: 85 LADALADCSGSIGFTRRS 102 >gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] Length = 170 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74 I+LV+P++ N G +AR +LT L LV P G+ + A D ++D V V Sbjct: 3 IVLVEPEIPGNTGNIARLCAAEHLT-LHLVEPL-GFQIDDKHLKRAGLDYWDLLD-VHVH 59 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N + L H Y T + ++ + + G +V ++FG+E GL Sbjct: 60 PNYDSVVRMLAGHHFYLNTTKAIRSYTDI-------------SYDGDDV-LVFGKETKGL 105 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E + + I P+ SLN+S AV ++ E M Sbjct: 106 PEELLRSHKEDCIRIPMIEEARSLNLSNAVAIVAMEAM 143 >gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] Length = 229 Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G + G E+WGLT+ L + + P+ + SLN+S A +++E + Sbjct: 112 FTGPTA-FVLGAEKWGLTDRARDLMDEALFIPMRGMVQSLNVSVATATLLFEAL------ 164 Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLE 204 + + T ++GE LS Y ++ E Sbjct: 165 --RQRQAAGTAPSQGEGLSADHYTKLLFE 191 >gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50] Length = 174 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 61 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 106 >gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] Length = 176 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+ +++D + NIG V R F + + L P + ++ A+ Sbjct: 17 EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124 +D + +N EA+ +L +N + E +I+LNE + I+ Sbjct: 77 FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIV 127 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E I S+ I P SLN+S +++W+ Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170 >gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 276 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 F ++ + A+ L V +FG E GL+ E A + A ++ P+ SLN Sbjct: 201 GFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHGLSEEITASAGASVAIPIKGEAESLN 260 Query: 157 ISQAVLLMVWE 167 ++ A + +WE Sbjct: 261 LATAAAMCLWE 271 >gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76 + DP N+G + R+ FN + + + P+E S++ A +I ++V +N Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ +LH + F ++ E L E FSG+ V ++ G E GL + Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 258 Query: 137 IALSNAIISFPVNPLFPSLNIS 158 NA+ + SLN+S Sbjct: 259 RETVNALARLDMPGAIKSLNVS 280 >gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] Length = 232 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL+++ I P+ + SLN+S A L+++E Sbjct: 116 ILLGQEKTGITPEALALADSDIIIPMIGMVQSLNVSVASALILYEA 161 >gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 274 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60 T PQ + G V+IL Q N+G + R TQ + L W S K + Sbjct: 115 TLTTPQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLW-STKVLRA 173 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF----KSVLAPKEAAIVLNERIF 116 A ++D +SN + A + A TA + K +L P Sbjct: 174 GMGAHKLLDLYEGWSNQQVLSAITAPLLAATADAEQDLYSLKKDLLHP------------ 221 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 V + G E G++ + +A + + S P++P SLN+S A + ++E + Sbjct: 222 ----VAWVMGSEGQGISEDLLAQAKGV-SIPIDPRVESLNVSTAAAICLFETL 269 >gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38] gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38] Length = 220 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+N K I + D N V R+ F + +L +V + G +K + A+ Sbjct: 28 LKNRTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKSIDK--EIAMGAEKW 85 Query: 68 IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +D R FS++++ I +L + I ATT P + +L+E + Q + Sbjct: 86 VDINR-FSSIQDCITNLKQKGYQIIATT------------PHNDSCLLHEFDIT-QPSAL 131 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 FG ER GL+ E + ++ + P+ SLNIS + +++ Sbjct: 132 FFGTERDGLSEEVMQQADGFLKIPMVGYTESLNISVSAAIII 173 >gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str. 2457T] gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905] gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82] gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74] gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671] gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 4343-70] gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218] gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227] Length = 206 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 93 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138 >gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431] gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327] Length = 206 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 93 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138 >gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 269 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P+ NIG + R N+ + + NP+ D + R+S CV + E Sbjct: 125 PEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRAS---VGCVFTVPIAVGSTTEV 181 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I L + +F A A+ E F+ +N I+ G E GLT E + S Sbjct: 182 IDYLK---------KKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTEDEGLTQEWLKNS 232 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 I P+ + S+N+S A ++++E Sbjct: 233 TQNIIIPMEGVIDSMNVSVAAAVLIFEA 260 >gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 155-74] Length = 206 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 93 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138 >gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +G+I G E G+ + LSN I+S P PSLN+S A + +W Sbjct: 186 LGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231 >gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1] gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3] Length = 218 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] Length = 218 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3] gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1] gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3] gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2] Length = 218 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 179 Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%) Query: 8 LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 + + K P+II++D N+G V R F + ++ L P + ++ A Sbjct: 19 FKEAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATD 78 Query: 65 ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQ 119 + V DSV + LKE L + E A++L++ G+ Sbjct: 79 AVAWEYVEDSVALSQRLKEQGVKL---------------CAIEQAEDAVMLDKFTPVKGE 123 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++FG E G+ E ++LS+ ++ P SLNIS + +++W+ Sbjct: 124 RYAVVFGNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWD 171 >gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 176 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 23/163 (14%) Query: 13 KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------ 65 K P I+++D + N+G V R F L ++ L P + ++ A+ Sbjct: 23 KVPFIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDWE 82 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGII 124 + D+V + LKE + + +++ + E + +LNE + Q + I+ Sbjct: 83 YIEDTVHIVDRLKE---EGYTVFS------------IEQAEGSTMLNELELQKNQKIAIV 127 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E I SN I P S+N+S +++W+ Sbjct: 128 MGNEVKGVQQEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWD 170 >gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] Length = 300 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 11/152 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L N+G +AR+ + + + N R + + SSA A I +V + Sbjct: 110 IIVLDHITDAGNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQV-A 168 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL++A+A L +N + + + K + + + NV ++ G E GL Sbjct: 169 NLQQALARL--------KNEGYWVAGASEKAEGGIWDANLTG--NVCLVMGNENTGLARL 218 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +S P + SLN++Q+ + ++E Sbjct: 219 TQEACDFFVSLPQRGVVSSLNVAQSATVCMYE 250 >gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei ATCC BAA-286] Length = 246 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 28/173 (16%) Query: 6 PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + K P I+++D N G +AR + + V P G S + NA Sbjct: 87 PFLYENGKDPFILVLDGITDVRNFGAIARTCEVAGVNAI--VIPAKG-------SVTVNA 137 Query: 65 DCVIDSVRVF--------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 D V S NL AI L RN + K V A + A + E + Sbjct: 138 DAVKTSAGALLKIPVCKEPNLTSAIQFL--------RN-SGIKVVAASERGADIYTEIDY 188 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +G + + G E G+ NE + +++ ++ P SLN+S A ++++E + Sbjct: 189 TGP-IAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVI 240 >gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W] gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11] Length = 229 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] Length = 210 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G E+WG++ E L++A I P+ + SLN+S A ++++E Sbjct: 129 ILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEA 174 >gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] Length = 229 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] Length = 161 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 25/172 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G ++LV PQ+ +N G +AR + ++L LV P G+ E A A D VR Sbjct: 8 QGLGVVLVAPQIPQNTGNIAR-ICAATFSELHLVKPL-GFSLEDAALRRAGLD-YWKEVR 64 Query: 73 VF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +F + A ++ T F + AP + ++FGR Sbjct: 65 LFLWEGWDHFTAANPRKRLLFFETGTYPPYFTASFAPGDM---------------LVFGR 109 Query: 128 ERWGLTNEEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177 E GL+ ++ S + I S P+ N SLN++ V ++++E + ++ + Sbjct: 110 ETKGLSQRILSFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQILLGKK 161 >gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073] gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89] gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1] gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88] gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a] gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B] gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736] gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82] gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15] gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034] gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU 83972] gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146] gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252] gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263] gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] Length = 229 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86] gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989] gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] Length = 229 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 243 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 16/154 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 V+ L + Q N+G + RA +FN T + VN + ++K SS A ++ V Sbjct: 98 VVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVN----FYNDKIVRSSQGALFTVNLVNY- 152 Query: 75 SNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A +LH + +N FK + + ++ +N+ F + + IIFG E G + Sbjct: 153 -----AYDNLHSVLK--KYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSGAS 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I +++ ++ P++ F SLN++ ++++E Sbjct: 206 ETSIKIADKLVYVPID--FESLNVAVCAGIVLYE 237 >gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 92 ARNRNNFKSV-LAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIALSNAIISFPVN 149 A ++ FK V +A KE AI L+ Q+ + I+FG E G+ ++ I+ S+ + P+ Sbjct: 190 ALHQAGFKVVSMALKENAIPLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMY 249 Query: 150 PLFPSLNISQAVLLMVWE 167 SLN++ A + WE Sbjct: 250 NEVDSLNVAAASAVTFWE 267 >gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 163 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV+P++ N G + R L LV P G+ ++ + A D + + Sbjct: 4 IVLVEPEIPYNTGAIGRTCVALG-AALHLVGPM-GFSIDEKQVRRAGLDYWQHLNYTFYE 61 Query: 76 NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N+ + A D+ YATT + N + V P E I FG+E GL Sbjct: 62 NIVDFTAKHPDIKPFYATT-KALNTYAEVSYPSE--------------TWIFFGKESAGL 106 Query: 133 TNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E + I P+ P SLN+S +V ++ +E Sbjct: 107 PEEMLLPFPERCIRIPMYPQIRSLNLSNSVAIIAYE 142 >gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium leguminosarum bv. viciae 3841] Length = 296 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76 + DP N+G + R+ FN + + + P+E S++ A +I ++V +N Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ +LH + F ++ E L E FSG+ V ++ G E GL + Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 258 Query: 137 IALSNAIISFPVNPLFPSLNIS 158 NA+ + SLN+S Sbjct: 259 RETVNALARLDMPGSIKSLNVS 280 >gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 301] gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046] gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227] gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str. 8401] gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11] gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1] gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str. REL606] gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933] gi|147866|gb|AAB00161.1| spoU [Escherichia coli] gi|290501|gb|AAA62004.1| spoU [Escherichia coli] gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai] gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301] gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T] gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046] gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227] gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401] gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli] gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli] gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli] gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli] gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli] gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)] gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017] gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC H10407] gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC 796-83] gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B] gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14] gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G] gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68] gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180] gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120] gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007] gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253] gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167] gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ECD227] gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1125] gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88] gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2747-71] gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6] gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272] gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304] Length = 229 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] Length = 229 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 256 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + Q N+G + R F+ L+ + + K S+S A ++V Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKV-E 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL + + LH +NNF S+ K+AA + + I + Q IIFG E G++ Sbjct: 164 NLSQILDKLH---------QNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGIS 214 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + I P+ F SLNI+ A ++++E Sbjct: 215 AALEKIIQKQIYIPI--AFESLNIANATAILLYE 246 >gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 176 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 15/164 (9%) Query: 8 LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++K P+II++D NIG V R F + ++ L P + ++ A Sbjct: 17 FKEASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGA-- 74 Query: 67 VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123 DSV N + I L TT + E A+ LN+ ++ + + Sbjct: 75 -TDSVVWEYVENTMDVIQSLKENKVTTI--------AIEQAENAVFLNDFKVSKDEKYAL 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 IFG E G+ E ++ + ++ P SLNIS + ++VW+ Sbjct: 126 IFGNEVKGVAQEVVSSCDTVVEIPQYGTKHSLNISVSAGVVVWD 169 >gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] Length = 156 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P++ N+G + R N L LV P +K + ++++ + Sbjct: 4 IVLVSPEMPANVGNIIRLSANTG-CNLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIHNT 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T RNR S K L++ F +V IFGRE GL + E Sbjct: 63 LEEALNTI-----GTDRNRCFAISTKGKKH----LSDINFQKGDV-FIFGRESAGLKDYE 112 Query: 137 ---IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I + A + P+ SLNIS AV + V+E Sbjct: 113 WSIIGIDQA-VRIPMKANSRSLNISNAVAITVYE 145 >gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] Length = 229 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 52 WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 WP + R SS+A ++ + +V+ + EA+A L A + L+ K A Sbjct: 52 WPGNRLRTMASSAAGSNSWV-TVKTHPTISEAVAQL------KASGMQILATHLSDK--A 102 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + E ++ + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 177 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 15/165 (9%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P++I++D + NIG V R F + ++ L P + + ++ A Sbjct: 16 EFKQAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGA- 74 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNE-RIFSGQNVG 122 DSV + + E + + + ++N LA ++A A LN+ +I Q Sbjct: 75 --TDSV-AWEYVNETLPLIEQL-------KSNSYETLAVEQAENATFLNDFKITQNQKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +IFG E G+ + + S+ ++ P SLNIS + ++VW+ Sbjct: 125 LIFGNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWD 169 >gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F] Length = 163 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 19/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 ++L PQ N G +AR+ FN T L L++P G+ R A D +++ ++ Sbjct: 7 VVLYQPQDPRNAGNIARSCVGFNAT-LHLIHPF-GFFITDERFKRAGLDYWDHLNLKQYA 64 Query: 76 NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + I D F++ A NN+ S + KE + ++RI+ ++FG+E Sbjct: 65 DFDDFIKQNQIDDNLFLFTKKA---NNYLSNINFKE-YLDHDQRIY------LVFGQETN 114 Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GL + + N ++ P++ S N++ +V+ ++E Sbjct: 115 GLPEQLLNKYQNNLVKIPMHNAIRSFNLANSVICALYE 152 >gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] Length = 256 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + Q N+G + R F+ L+ + + K S+S A ++V Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKV-E 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL + + LH +NNF S+ K+AA + + I + Q IIFG E G++ Sbjct: 164 NLSQILDKLH---------QNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGIS 214 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + I P+ F SLNI+ A ++++E Sbjct: 215 AALEKIIQKQIYIPI--AFESLNIANATAILLYE 246 >gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16] gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16] Length = 156 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 19/157 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL LV P G+P E AR A D ++RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAGLDYHEYATMRVHE 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F V A + +F + G+ R W Sbjct: 62 SWDALMASEQPDPARMFALTTRGSTPFGEV-----AFRPGDWFVFGSETRGLSPERRDWF 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + I L P+ P SLN+S V ++V+E Sbjct: 117 PPAQRIRL-------PMRPDNRSLNLSNTVAVVVFEA 146 >gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans 2-40] Length = 224 Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 22/157 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I + Q G N+ + R + ++ V PR+G+ S ++SA+ +D + +S Sbjct: 21 TVITEEVQKGRNLSAIIRTCDAVGIPEVHSVVPREGFTSYNGTAASAHK--WVD-IHHYS 77 Query: 76 NLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 E I L + A RN +F+ + K A+++ G E W Sbjct: 78 TALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLM--------------GAEIW 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G++ L I P+ + S N+S A ++ E Sbjct: 124 GVSEPARELVTHTIHLPMVGMIESYNVSVACAGILLE 160 >gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205] Length = 238 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G + + G E+WG++ E +AL + + P+ + SLN+S A +++E + + Sbjct: 119 FTGPSC-FLMGAEKWGMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRA 177 Query: 176 SEKNVKEQNTPATKGE 191 + + P + E Sbjct: 178 GKVPSNGEGIPGGESE 193 >gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] Length = 218 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] Length = 218 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] Length = 229 Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1] Length = 218 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150 >gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 177 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 8/152 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL D + NIG R FN+ ++ L P + ++ A ID Sbjct: 27 IIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDW----- 81 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 E D++ + A S+ +E ++ Q ++FG E G+ Sbjct: 82 ---EYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVDQS 138 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I SN II P SLN+S +++WE Sbjct: 139 VIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWE 170 >gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863] gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v] Length = 229 Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197] gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197] gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] Length = 229 Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160 >gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39] gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] Length = 229 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536] gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026] gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042] gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] Length = 229 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|167946047|ref|ZP_02533121.1| rRNA methyltransferase, TrmH family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + T+AR R+ +VL P+E + E G+ V ++FGRE GL+NEE+ Sbjct: 10 VGLVIGTSARERSVAWAVLNPRECGGQVIEEAAVGE-VALVFGRENSGLSNEEL 62 >gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 30/167 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I L +P++ +N G +AR F++T L L+ P G+ E A D + + Sbjct: 3 ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPL-GFKLEDKYLKRAGLDYWPLVKLKNYS 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+N K++ + N + + K+ + L + F ++ ++FGRE GL Sbjct: 61 NFNNFKDS--------------KKNKRIIAFSKKNGVYLKDFRFHEDDI-LLFGREDTGL 105 Query: 133 TNEEIALSNAIIS--FPVNPL-------FPSLNISQAVLLMVWECME 170 N I SN++IS P L SLN+S A + ++E + Sbjct: 106 PNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYK 152 >gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 231 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 F+G + + G E+WG+++E +A+ + + P+ + SLN+S A +++E + Sbjct: 112 FTGPSC-FLMGAEKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQ 166 >gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 249 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 27/154 (17%) Query: 13 KGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANAD 65 K P+++L DP N+G + R+ F+ +TQ R P G AR++S + Sbjct: 99 KRPILVLDQVTDPH---NVGAILRSAAAFDALCIVTQDRHAPPESG---VLARAASGALE 152 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGII 124 ++ VRV NL A+ ++ + + EA + E I GQ+ V ++ Sbjct: 153 -IVPWVRVV-NLARALDEI---------AEAGYWRIGLDGEADTTIGEAI--GQSRVALV 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 G E GL + IA + I P++P SLN+S Sbjct: 200 LGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVS 233 >gi|26417538|gb|AAM75409.1| probable methyltransferase PA3817 [Pseudomonas putida] Length = 61 Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++LV+ NIG ARAM N L++L LV P+ +P +A + ++ AD V+ + + Sbjct: 7 VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPDAEASARASGADDVLGNAQ 61 >gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 299 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 10/154 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G +I+L ++ NIG + R + + LV+ +++ R A+ V V Sbjct: 116 GDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSDLATIADR-RLVRASRGYVFSLPIV 174 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ +AIA HF R V E + ++E + + + ++ G E+ G + Sbjct: 175 LASRADAIA--HF-------RRTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTS 225 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++++ +S P+NP SLN+S + ++E Sbjct: 226 RSFESIASHSVSIPINPAAESLNVSVCAGIALYE 259 >gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 2069 Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ GRER G+ + I L + + P + SLN+ + LMVWE IV + Sbjct: 2012 ILLGRERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQHIVPA 2065 >gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] Length = 281 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FG E WGL+ E A + + P+ SLN++ + + WEC ++ Sbjct: 233 FGSEGWGLSQEARAACDMSVMIPMQRGIDSLNVAASSAVFFWECARSA 280 >gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] Length = 159 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 26/168 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVI-DS 70 I+LV PQ+ +N G + R N NL +L ++ P SEKA + A + VI +S Sbjct: 4 IVLVHPQIPQNTGSIGRMCVNANL-KLHIIKPTVFDISEKAVRRAGLDYWARLNPVIWES 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + F + D F YATT ++ F EA + +F FG E Sbjct: 63 LDEFLHANAQFED-RFFYATTKAHKFYF-------EAEFKKGDFLF--------FGGEST 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL E E +NA I P+ SLN++ + ++ +E + + S Sbjct: 107 GLPMELMERNFANA-IKIPMGEHGRSLNLATSAGIIAYEAIRQNFAQS 153 >gi|78189163|ref|YP_379501.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii CaD3] gi|78171362|gb|ABB28458.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii CaD3] Length = 1059 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 24/162 (14%) Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 SVLA +NE +FS +VGI+ R+R+ + + ++AL+ I +F ++ + Sbjct: 693 SVLASYNQGFAINE-LFSLNSVGIVTARDRFVIDSSKLALTQRIKNF--------FSLDK 743 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 LL ++ ENS + + +Q+T + + L Y RP + + Sbjct: 744 DELLRMYGLKENS--AWRIHTIKQSTIRYSADFIQMLAY-----------RPFDNRYVYY 790 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261 D L+ R ++M+ FL IV T+ + + ++V L Sbjct: 791 DPLFIERSRSDVMKH--FLQENIVLTVCRQVKAGESYHHVFL 830 >gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354] gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354] Length = 229 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E Sbjct: 116 ILMGQEKTGITEEALALADRDIIIPMIGMVQSLNVSVASALILYE 160 >gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] Length = 241 Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 26/149 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEAIADL 84 NI V R+ + QL V WP R S A V+ + + +AI L Sbjct: 32 NIAAVLRSADAVGVHQLHAV-----WPESAMRVSGNTASGSQQWVKTLRHQTVTDAITAL 86 Query: 85 -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + N +F+ + K AIVL G E+ G+++E + L Sbjct: 87 KADGMQVVVTNFSPNAKDFREIDYTKPTAIVL--------------GHEKNGVSDEAVRL 132 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++A + P+ + SLN+S A L+++E Sbjct: 133 ADAEVIIPMVGMVQSLNVSVAGALVLFEA 161 >gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] Length = 429 Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEK-ARSSSANADCVIDSV 71 G ++++ P+ +G VARA +F LR+V PR + + + + A+S+S A ++ Sbjct: 58 GVTVVIISPRKPVTVGTVARACGSFECEDLRIVMPRQESYITRRHAKSASKGAQYILYRA 117 Query: 72 RVFSNLKEAIADLHFIYATT 91 + ++ +A AD A T Sbjct: 118 AHYDSIAQATADCEVRIAFT 137 >gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 261 Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E GL++ ++L+N I+S P++ SLN++ A L+++E I Sbjct: 209 ILLGNEGSGLSDSLVSLANEIVSIPLSEGIESLNVAIATALILYEAXRQQI 259 >gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum reducens MI-1] Length = 152 Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 22/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 I+LV+P++ N G +AR + L LV P G+ ++ A D + + Sbjct: 3 IVLVEPEIPANTGNIARTC-SVTGASLHLVEPL-GFSTDDRYLKRAGLDYWHLLDLHYHK 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ L++ + F Y TT R ++ +N ++FG+E GL Sbjct: 61 SFAALQQQYPEGRFWYFTTKGGRPYHEASFE---------------ENDFLVFGKETAGL 105 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +A + + + P+ SLN+S +V + V+E + Sbjct: 106 PKELLAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEAL 143 >gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 229 Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + G E+WGL+ L +A I P+ + SLN+S A +++E + VS Sbjct: 116 TAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQREVSG 171 >gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 269 Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 19/166 (11%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64 +L+ K P++++ + P+ NIG + R NL + + NP+ D + RSS Sbjct: 113 ELKFKNKNPLVLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSS---V 169 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 CV + N E IA L NN A A+ V F + I+ Sbjct: 170 GCVFTNPIATGNTTEIIAFLK---------ENNINIFCAALTASKVYTNTSFKTPS-AIV 219 Query: 125 FGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E GL+ E E A N II P+ S+N+S + ++++E Sbjct: 220 VGTEATGLSEEWLENATQNIII--PMEGEIDSMNVSVSAAILIFEA 263 >gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87] gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87] Length = 268 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 27/170 (15%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64 +L S P+I++ + P+ NIG + R N+ + + NP+ D + RSS Sbjct: 111 KLNFSHNNPLILVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSS---V 167 Query: 65 DCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 CV + E I L IYA + + + K +AIV+ Sbjct: 168 GCVFTNKIAIGTTSEIIKFLQHKNIAIYAAALQASEIYTKIDFTKASAIVV--------- 218 Query: 121 VGIIFGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E GL E E A N II P+N S+N+S A ++++E Sbjct: 219 -----GTEATGLNQEWREAATQNIII--PMNGAIDSMNVSVAAGILIFEA 261 >gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 156 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 25/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G V R N QL LV P G+P + AR A D ++RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLDDARMRRAGLDYHEYATMRVHD 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F V P + +FG E Sbjct: 62 SWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E E I P+ P SLN+S V ++V+E Sbjct: 107 GLSPERREWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEA 146 >gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] Length = 229 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + G E+WGLT++ L + + P+ + SLN+S A +++E + V+ Sbjct: 116 TAFVLGAEKWGLTDQARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLAPT 175 Query: 181 KEQN-TPATKGELLSFLDYLEISLEERGYFRP 211 + + P +LL Y E++ R RP Sbjct: 176 QGEGLKPEQYQQLLFEWSYPEVARWCREQERP 207 >gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 296 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E WG+ E++ L ++ + P+ SLN++ A + ++E N Sbjct: 246 VFGNEAWGMRTEDLELCDSSAAVPIYGKAESLNLATAASVCIYESARN 293 >gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 248 Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 22/156 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV++L +P+ N G V R F T + D W R + + Sbjct: 108 PVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG-----LHFATAV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ A ++A ++ +S P +A + FG ER GL+ Sbjct: 163 ERLEVADLPAGPLFALDPEG-DDIRSTKLPDDAVLA--------------FGSERTGLSP 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WEC 168 E A ++ ++S P+ P S N++ +V + + W C Sbjct: 208 ELRARADHLLSLPMRPQVSSYNLATSVAMTLYHWSC 243 >gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] Length = 157 Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 15/154 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P G+P + R A D F+N Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPM-GFPWDDKRLRRAGLD-----YHEFAN 56 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135 ++ FI + + + P +A+ + ++FG E GL E Sbjct: 57 IRRHADYAAFIASENPQRLFALTTKGTPAHSAVSYQPGDY------LLFGPETRGLPAEI 110 Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E + I P+ S+N+S AV ++V+E Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEA 144 >gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 155 Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 26/161 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75 I+LV P++ +N G + R +N +L +V P S+KA R + + ++ + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPI-IWE 61 Query: 76 NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL+E I F +ATT KS A +A N+ +F FG E + Sbjct: 62 NLEEFLNENMIYKNRFFFATT-------KSQKAYFDAKFQKNDFLF--------FGSESY 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL E + L+ NA I+ P+ SLN++ +V ++ +E + Sbjct: 107 GLPMELMQLNWENA-ITIPMKSYGRSLNLATSVGIISYEAL 146 >gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 178 Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 15/170 (8%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++S K P+I+++D + NIG V R F + ++ L P + + ++ A Sbjct: 17 EFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGAT 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVG 122 +D V + L E + DL + V++ ++A ++ + F+ Q Sbjct: 77 QTVDWAYVENTL-EVVKDL----------QQQGVKVMSIEQAEDSISLKDFNPRQNQLYA 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ E + S+ ++ P SLNIS + VW+ M + Sbjct: 126 LVLGHEVKGVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFMSKT 175 >gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 302 Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76 + DP N+G + R+ F+ + + + P+E S++ A +I +++ +N Sbjct: 161 VTDPH---NVGAIMRSAVAFDAAAV--ITTQRHSPTESGVLAKSASGALELIPYIQI-TN 214 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ +LH R F S+ E L E FSG+ V ++ G E GL + Sbjct: 215 LADALGELH---------RLGFVSIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 264 Query: 137 IALSNAIISFPVNPLFPSLNIS 158 NA+ + SLN+S Sbjct: 265 RETVNALARLDMPGAIKSLNVS 286 >gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 155 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 26/161 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75 I+LV P++ +N G + R +N +L +V P S+KA R + + ++ + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPI-IWE 61 Query: 76 NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL+E I F +ATT KS A +A N+ +F FG E + Sbjct: 62 NLEEFLNENMIYKNRFFFATT-------KSQKAYFDAEFQKNDFLF--------FGSESY 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL E + L+ NA I+ P+ SLN++ +V ++ +E + Sbjct: 107 GLPMELMQLNWENA-ITIPMKSYGRSLNLATSVGIISYEAL 146 >gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 246 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 13 KGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANAD 65 K PV++L DP N+G + R+ F+ +TQ R P G ARS+S + Sbjct: 99 KRPVLVLDQVTDPH---NVGAILRSAAAFDALCIVTQDRHAPPESG---VLARSASGALE 152 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ VRV NL A+ ++ + + EA L E I + + V ++ Sbjct: 153 -IVPWVRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGTSR-VALVL 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 G E GL + +A + + P++P SLN+S Sbjct: 201 GAEGEGLRHNSMAHCDILAKLPISPRMESLNVS 233 Searching..................................................done Results from round 2 >gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 268/268 (100%), Positives = 268/268 (100%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS Sbjct: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN Sbjct: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 GIVSTLDKFSRQSSRRNNVLLQKTEKSE Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 >gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 303 Score = 348 bits (893), Expect = 6e-94, Method: Composition-based stats. Identities = 202/268 (75%), Positives = 235/268 (87%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + +LQNS K P+I+LVDPQLGENIGMVARAM NFN+TQLRLVNPRDGWP++KARSS Sbjct: 35 MAVHMQKLQNSTKSPIIVLVDPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSS 94 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SANAD VIDSVRVFS+LKEAI+DL+F+YATTAR+R+NFKSV APKEAA+VLNERI SGQN Sbjct: 95 SANADHVIDSVRVFSSLKEAISDLNFVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQN 154 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 VG+IFG ER GLTNEEIALSNAIISFPVNP F SLNI+QAVL+M WE MENS+V +KNV Sbjct: 155 VGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWMENSVVVPKKNV 214 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 KE + PAT+GELLSFLDY E SL ERGYFRP E+KKKMLDDL S+FIR ELMR+E+FLLR Sbjct: 215 KESDIPATRGELLSFLDYTENSLAERGYFRPEERKKKMLDDLRSVFIRLELMRQEIFLLR 274 Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 G++STLD+FSR+S R + V+ QK + + Sbjct: 275 GVISTLDRFSRESPRGSLVVPQKKQNNH 302 >gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 277 Score = 330 bits (848), Expect = 9e-89, Method: Composition-based stats. Identities = 134/260 (51%), Positives = 185/260 (71%), Gaps = 2/260 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M +L+ A+GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++ Sbjct: 1 MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VID RVF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ Sbjct: 61 ASKADHVIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETL 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + Sbjct: 181 FQPIEQRPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 RG++ +LD+F RQ ++ Sbjct: 241 FRGVIRSLDRFPRQWPKKTG 260 >gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42] Length = 276 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 135/267 (50%), Positives = 188/267 (70%), Gaps = 2/267 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI+ +V+ L++AIADL+F+YATTAR+R+N+K V +P AA L R +G+ Sbjct: 61 ASKADHVIEGTKVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEA 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLEAVP 180 Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + + P+TK +L D LE +L+ R YF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265 LRG++S+LD+FSR S R+ E Sbjct: 241 LRGVISSLDRFSRNSPRKGGFTRSGKE 267 >gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989] Length = 276 Score = 328 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 84/268 (31%), Positives = 143/268 (53%), Gaps = 7/268 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +P+ + + I+LV+ NIG VARAM N LT+L LV+P+D +PSE+A ++NA Sbjct: 9 SPESIKALQSIRIVLVNTSHPGNIGGVARAMKNMGLTELYLVSPKD-YPSERAEWRASNA 67 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ S V L +AIAD + T+AR R ++ P+E A + S V I+ Sbjct: 68 LDVLQSATVVDTLDDAIADCGLVIGTSARARRIPWPLVTPRECADR-SYHESSTHPVAIV 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEE+ N + P NP + SLN++ AV ++ +E + + + + Sbjct: 127 FGREDRGLTNEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVRMTCLNNQQGKPIHFD 186 Query: 185 ----TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 PA L + ++L+ +LE+ G+ P E ++ + L ++ R L E+ +LR Sbjct: 187 DWDMPPAKNNALEHYYEHLQSTLEKVGFLEP-ENPRQTMTRLRRLYSRVRLDEMELNILR 245 Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 G+++ + F ++ ++ N L +T + + Sbjct: 246 GVLTAMQNFVYRTEKKLNDLEVRTNEDK 273 >gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1] gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1] Length = 279 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ Sbjct: 30 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 88 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE G Sbjct: 89 QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAG 148 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + E K + A Sbjct: 149 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELA 208 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 209 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 267 Query: 248 KFSRQSSRR 256 K R + Sbjct: 268 KVVRGEPHK 276 >gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli CNPAF512] Length = 276 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 2/260 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++ Sbjct: 1 MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ Sbjct: 61 ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEA 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVP 180 Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + + P+TK +L D LE +L+ R YF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 LRG++S+LD+F+R S R+ Sbjct: 241 LRGVISSLDRFTRNSPRKGG 260 >gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 276 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 134/267 (50%), Positives = 186/267 (69%), Gaps = 2/267 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI++ +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ Sbjct: 61 ASKADHVIEATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEG 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQAMGQTPSTKDQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265 LRG++S+LD+FSR+S R E Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTAAKE 267 >gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 133/267 (49%), Positives = 184/267 (68%), Gaps = 2/267 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI + +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L + G+ Sbjct: 61 ASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRAKFRVGEG 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDVGAVP 180 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265 LRG++S+LD+FSR+S R E Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTPAKE 267 >gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 276 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 2/267 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI+ +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L R +G+ Sbjct: 61 ASKADHVIEETKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEG 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265 LRG++S+LD+FSR+S R E Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTAAKE 267 >gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] Length = 280 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 131/260 (50%), Positives = 184/260 (70%), Gaps = 2/260 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M +L+ A+GP IILV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++ Sbjct: 1 MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VID +VF L+EAI DL+F+YATTAR R FK V AP AA L + +G+ Sbjct: 61 ASKADHVIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGER 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + ++ + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLDETL 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + P+TK ++ +++E +L+ RGYF P EKK KM+D+L ++ R +E+ + Sbjct: 181 FHPIEQRPSTKEQVFGLFEHIEEALDARGYFHPPEKKPKMVDNLRAVLSRRGFSEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 RG++ +LD+F RQ ++ Sbjct: 241 FRGVIRSLDRFPRQWPKQAG 260 >gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1] gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 264 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 11/256 (4%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +P+ + ++LV+ NIG ARAM N L++L LV+PR +P +A + ++ A Sbjct: 3 SPRAPAVLQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPR-VFPHHEADARASGA 61 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++++ +V + L++A+ + + T+AR+R +L P+E + E G + ++ Sbjct: 62 GDILENAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALV 121 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--- 181 FGRE GLTN+E+ + + P +P F SLN+ AV ++ +E + + + K Sbjct: 122 FGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAQGQPTKIEK 181 Query: 182 ------EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + AT EL F ++LE +L + P EK + ++ L ++ R + R E Sbjct: 182 EEVASVKSAELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAE 240 Query: 236 VFLLRGIVSTLDKFSR 251 + +LRGI++ K +R Sbjct: 241 MNILRGILTETQKAAR 256 >gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652] gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT 652] Length = 276 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 134/260 (51%), Positives = 188/260 (72%), Gaps = 2/260 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++ Sbjct: 1 MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + +G+ Sbjct: 61 ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEA 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++S+ E Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSSMEDLEAVP 180 Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + + P+TK +L + LE +L+ R YF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQALEQRPSTKEQLFGLFEQLEKALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 LRG++S+LD+F+R S+R+ Sbjct: 241 LRGVISSLDRFTRNSTRKGG 260 >gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas fluorescens Pf-5] Length = 257 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV PR +PS +A + ++ A ++++ Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-VFPSHEADARASGATDILENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+A ++ T+AR+R +L P+E+ + + E G V ++FGRE G Sbjct: 61 QVVATLEDALAGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTN+E+ + + P +P F SLN++ AV ++ +E + + + + K + Sbjct: 121 LTNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVRMSWLAAQGQPSKVEKDEVASPR 180 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + AT EL F ++L+ +L + P EK + ++ L ++ R + R E+ +LRGI Sbjct: 181 SDELATMDELERFYEHLQQTLVAIDFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R ++ Sbjct: 240 LTETQKAARGELQK 253 >gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1] Length = 283 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ Sbjct: 34 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 92 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE G Sbjct: 93 QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 152 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + E K + A Sbjct: 153 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPRKVEKVDAAELA 212 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 213 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 271 Query: 248 KFSRQSSRR 256 K R + Sbjct: 272 KVVRGEPHK 280 >gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4] Length = 286 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 131/255 (51%), Positives = 186/255 (72%), Gaps = 2/255 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQLGENIGMVARAM NF L +LRLVNPRDGWPSEKARS+++ AD VID Sbjct: 12 AEGPAIILVEPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ L+EA+ADL+F+YATTAR R+NFK V +P AA L R +G+ GI+FGRE+ G Sbjct: 72 KLYDTLEEALADLNFVYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L NE++AL++ I++FPVNP F SLNI+QAVLLM +E M++++ + PA+K Sbjct: 132 LKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSTMEDVTQTPFQGVDQLPASK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E++ +++E +L+ RGYFRP+ KK +M+D+L ++ R E+ ++RG+VS+LD+F Sbjct: 192 EEVIGLFEHMEDALDARGYFRPIHKKARMIDNLRAVLTRRGFTSPEINVMRGVVSSLDRF 251 Query: 250 SRQSSRRNNVLLQKT 264 SR++ R L+ Sbjct: 252 SRRNPRGAGAPLEGD 266 >gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48] gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas entomophila L48] Length = 251 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P+ +PS +A + ++ AD ++D+V Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPSAEASARASGADDLLDNV 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V L++A+ + T+AR R+ ++ P+E G+ + ++FGRE G Sbjct: 61 QVVDTLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + K + + A Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAGQGAATKVEKVDASELA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 181 TMDEMELFYDHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQ 239 Query: 248 KFSRQSSRR 256 K +R + Sbjct: 240 KVARGEPHK 248 >gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 242 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM LT L VNP++ P + + SA A VI + Sbjct: 2 LENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +AI + T+ARNR +LAP+E + + V +IFGRER G Sbjct: 61 HIVDTIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAA-NKPVAVIFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+ + + P NP + SLN++ AV L+ +E ++ EK N + Sbjct: 120 LTNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPP 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE L E G+ RP +++ L +F R +E+ +LRGI+++++K Sbjct: 180 AEDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEK 238 Query: 249 FSRQ 252 ++++ Sbjct: 239 WAKK 242 >gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 262 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 11/260 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++LV NIG ARAM N L++L LV P + +PS A + ++ A V Sbjct: 1 MSALLDNIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D+ +V L+EA+ + T+AR+R +L P+E + E+ +G V ++FGR Sbjct: 60 LDAAQVVGTLEEALVGCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAAGGEVALVFGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---- 183 E GLTNEE+ + P NP F SLN++ AV ++ +E + +S K + Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179 Query: 184 -----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + AT EL SF +L L G+ P +K + ++ L ++ R + + E+ + Sbjct: 180 TAMLSSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 LRGI++ +K R + Sbjct: 239 LRGILTETEKAVRGEPHKQG 258 >gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 280 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 129/266 (48%), Positives = 189/266 (71%), Gaps = 2/266 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP +ILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++ Sbjct: 1 MAGTNSERQLLAEGPAVILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I++ +V+ L++A+ADL+F+YATTAR R+ FK V +P AA L R +G+ Sbjct: 61 ASKADHIIEATKVYDTLEQAVADLNFVYATTARERDGFKPVRSPVVAAETLRARFKAGEG 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEK 178 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M+ + V++ Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKTGMEDVAAVP 180 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + P+TK +L D LE +L+ R YF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQATEQRPSTKEQLFGLFDQLEEALDARNYFHPAGKKPKMIDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKT 264 LRG++S+LD+F+R+S R + + + Sbjct: 241 LRGVISSLDRFTRKSPRGSGSHPRSS 266 >gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] Length = 242 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM LT L VNP++ P + + SA A VI + Sbjct: 2 LENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +AI + T+ARNR +LAP+E + + V +IFGRER G Sbjct: 61 HIVETIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAA-NKPVAVIFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+ + + P NP + SLN++ AV L+ +E ++ EK N + Sbjct: 120 LTNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPP 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE L E G+ RP +++ L +F R +E+ +LRGI+++++K Sbjct: 180 AEDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEK 238 Query: 249 FSRQ 252 ++++ Sbjct: 239 WAKK 242 >gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus nematophila ATCC 19061] Length = 244 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 8/246 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM L+ L LVNP P A + SA A VI + Sbjct: 2 LENIRIILVETSHTGNMGSAARAMKTMGLSNLYLVNPLVQ-PDSNAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L EA+A + T+AR+R ++ P+E + + V I+FGRER G Sbjct: 61 TIVNTLDEALAGCELVIGTSARSRTLPWPMVEPRECGERCV-KASNHSPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTP 186 LTNEE+ + + P NP + SLN++ AV L+ +E + EK + + + Sbjct: 120 LTNEELQKCHYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAFQEKSEKTVSPEHETEY 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++ F + E L E G+ R V ++++ L ++ R +E+ +LRGI++++ Sbjct: 180 PPIEDMERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSM 238 Query: 247 DKFSRQ 252 +K++++ Sbjct: 239 EKWAKK 244 >gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 3/241 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT+L LV+P+ P + A + +A A V+ + Sbjct: 2 LDQIRIVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQ-TLPDDSAHALAAGASDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV S L EAIAD + T+AR+R +L P+EA V ++FGRER G Sbjct: 61 RVVSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKAVGEGMK-HPVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTN+E+ + ++ P NP + SLN++ AV + +E + V+ + + + Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVRMCWLQDQAPEVESEADYPSAHQ 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L + G+ + +++ L +F R E+ +LRGI++++ K Sbjct: 180 LEGFYQHLEQTLLKTGFI-ADDHPGQVMSKLRRLFNRARPEAIELNILRGILTSIQKPKP 238 Query: 252 Q 252 Q Sbjct: 239 Q 239 >gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina ymp] Length = 262 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 11/260 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++LV NIG ARAM N L++L LV P + +PS A + ++ A V Sbjct: 1 MAALLDKIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D+ +V L+EA+ + T+AR+R +L P+E + E+ G V ++FGR Sbjct: 60 LDAAQVVDTLEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGGEVALVFGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---- 183 E GLTNEE+ + P NP F SLN++ AV ++ +E + +S K + Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179 Query: 184 -----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + AT EL SF +L L G+ P +K + ++ L ++ R + + E+ + Sbjct: 180 TAMLNSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 LRGI++ +K R + Sbjct: 239 LRGILTETEKAVRGEPHKQG 258 >gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis] gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis] Length = 259 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 129/259 (49%), Positives = 184/259 (71%), Gaps = 2/259 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I++ +V+ L++AIADL+F+YATTAR R +K V +P AA L + +G+ Sbjct: 61 ASKADHIIEATKVYDTLEQAIADLNFVYATTARERYGYKPVRSPVAAAETLRAKFKAGEG 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + + Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 P+TK +L D LE +L+ R YF P KK KM+D+L ++ R +E+ + Sbjct: 181 FQAVGQRPSTKEQLFGLFDQLEEALDARNYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240 Query: 239 LRGIVSTLDKFSRQSSRRN 257 LRG++S+LD+FSR+S R + Sbjct: 241 LRGVISSLDRFSRKSPRGS 259 >gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens SBW25] Length = 256 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG VARAM N LT+L LV PR +P +A + ++ A+ +++ Sbjct: 2 LQNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPR-LFPHHEADARASGANDILEKA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE G Sbjct: 61 QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTNEE+ + + P +P F SLN+ AV ++ +E + + + K + Sbjct: 121 LTNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVRMAWLAAEGQPSKVEKDEVASIK 180 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI Sbjct: 181 SGELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239 Query: 243 VSTLDKFSR 251 ++ K +R Sbjct: 240 LTETQKAAR 248 >gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501] gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501] gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 278 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 11/255 (4%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S + ++LV+ NIG ARAM N L++L LV+P + +PS A + ++ A ++DS Sbjct: 22 SLQNIRVVLVNTSHAGNIGGAARAMKNMGLSRLVLVDP-EDFPSPDAVARASGATDILDS 80 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V + L+EA+ + T+AR+R +L P+E A V E+ +G +V ++FGRE Sbjct: 81 AQVVATLEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVALVFGREYA 140 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------ 184 GLTNEE+ + P +P F SLN++ AV ++ +E + + + K + Sbjct: 141 GLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVRMAWLAAEGRPTKVEKLETTAM 200 Query: 185 ---TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 P T EL ++ +LE +L + G+ P K + ++ L ++ R + + E+ +LRG Sbjct: 201 LDAQPVTVDELENYFGHLEQTLVDIGFLDPA-KPRHLMPRLRRLYGRSGISKLEMNILRG 259 Query: 242 IVSTLDKFSRQSSRR 256 I++ K +R + Sbjct: 260 ILTETQKAARGEPHK 274 >gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava] Length = 255 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 136/252 (53%), Gaps = 9/252 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++L+ NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALTGCRLVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + + +SE+ +++ Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMSWLAASEQPAHDESSKMAHNA 180 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT E+ F +LE +L G+ P EK + ++ L +F R E+ E+ +LRGI++ Sbjct: 181 ELATMDEMEGFYGHLEATLVAIGFLDP-EKPRHLMARLRRLFGRSEVEHSELSILRGILT 239 Query: 245 TLDKFSRQSSRR 256 K +R + Sbjct: 240 ETQKAARGEPYK 251 >gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida KT2440] Length = 251 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE G Sbjct: 61 QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + E K + A Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239 Query: 248 KFSRQSSRR 256 K R + Sbjct: 240 KVVRGEPHK 248 >gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera 4Rx13] Length = 244 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 5/243 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +AIA + T+AR+R +L P+E + V ++FGRER GLT Sbjct: 63 VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVHE-GEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGE 191 N+E+ + ++ P NP + SLN++ AV ++ +E + + V E+ + Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQVGVPQLEETPYPLVDD 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K + Sbjct: 182 LERFYQHLEQTLQHSGFIRPAH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240 Query: 252 QSS 254 Sbjct: 241 HQG 243 >gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419] gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae WSM419] Length = 276 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 131/258 (50%), Positives = 185/258 (71%), Gaps = 2/258 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID + Sbjct: 13 EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L +R GQ VGIIFGRER GL Sbjct: 73 LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190 TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ + PATK Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMASEDETFFQPSEQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252 Query: 251 RQSSRRNNVLLQKTEKSE 268 R+S R + + K Sbjct: 253 RESPRGSAAPPGYSRKEH 270 >gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 256 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV PR +P +A + ++ A ++ + Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDILANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + + T+AR+R +L P+E + E G + ++FGRE G Sbjct: 61 QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182 LTN+E+ + + P +P F SLN+ AV ++ +E + + K Sbjct: 121 LTNDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAEGKPSKIEKTEVTSPR 180 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 T AT EL F ++LE +L + + P EK + ++ L ++ R + R E+ +LRGI Sbjct: 181 SETLATMDELERFYEHLEQTLVDIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239 Query: 243 VSTLDKFSR 251 ++ K +R Sbjct: 240 LTETQKAAR 248 >gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Glaciecola sp. HTCC2999] Length = 238 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 4/241 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ NIG ARAM L+ L LV+P P K+ + +A A V+ + Sbjct: 2 LDNIRIVLVNTSHTGNIGSTARAMKTMGLSDLYLVDPVSA-PDGKSSALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + S+L EA+ D I T+AR+R +L P+E + + + G V ++FGRE G Sbjct: 61 TIVSDLSEAVKDCSLIVGTSARSRTLPWPMLTPRECGVKMVQEGQKG-PVALVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ L + + P NP + SLN++ AV + +E + E + P + + Sbjct: 120 LSNEELQLCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMGYLNLDSYPDMESDYPLS-ED 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L E G+ ++ L + R +E+ +LRGI+S +DK ++ Sbjct: 179 LERFYVHLENTLTETGFIVKNH-PGVVMTKLRRLVNRARPESQELNILRGILSAIDKKNK 237 Query: 252 Q 252 Q Sbjct: 238 Q 238 >gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii ATCC 27126] Length = 254 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 4/257 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ NIG ARAM L+ L LV+P + P +A + +A A V+ + Sbjct: 2 LENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVNE-PDGQASALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ S L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE G Sbjct: 61 KIVSTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + + P NP + SLN++ AV + +E + E+ P + Sbjct: 120 LTNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYP-LNDD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +LE + R ++ L +F R +E+ +LRGI++++DK + Sbjct: 179 LERFYTHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237 Query: 252 QSSRRNNVLLQKTEKSE 268 ++ + E+ E Sbjct: 238 NANSGDADPAPAIEEKE 254 >gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 245 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 7/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM L+ L LVNP P +A S SA A VI + Sbjct: 2 LPNIRIVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLVK-PDSQAISLSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TIVDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGEH-SAKAAQTAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVKEQNTPA 187 LTNEE+ N + P NP + SLN++ AV ++ +E + + + E+ Sbjct: 120 LTNEELQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLALLEAAKPQIEYEETPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE +L E G+ R +++ L +F R +E+ +LRGI+++++ Sbjct: 180 LVDDLERFYQHLEKTLLETGFIRQAH-PGQVMSKLRRLFTRARPESQELNILRGILTSIE 238 Query: 248 KFS 250 K Sbjct: 239 KTH 241 >gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas atlantica T6c] Length = 241 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 3/240 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG ARAM L+QL LV+P P K+ + +A A V+ + Sbjct: 2 LENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKSSALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ S + EA+AD + T+AR+R +L P+E L + V ++FGRE G Sbjct: 61 KIVSTVAEAVADCGLVVGTSARSRTLSWPMLEPRECGEKLVSEVPK-YPVALVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ + + P NP + SLN++ AV + +E + + + Q + Sbjct: 120 LSNEELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRREANVQEEYPLADD 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L + + P + ++ L +F R +E+ +LRGI+++++K S+ Sbjct: 180 LEGFYSHLEQTLHKTNFIIP-QHPGMVMTKLRRLFNRARPETQELNILRGILASIEKSSK 238 >gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia ruckeri ATCC 29473] Length = 257 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCNLVIGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + + +E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQAAITPLSEEEEAPYPLI 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L + G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYQHLEQVLSQTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + NN ++K ++ Sbjct: 241 DKYQKSANNAHMKKDKE 257 >gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568] gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 244 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 5/243 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +AIA + T+AR+R +L P+E I V ++FGRER GLT Sbjct: 63 VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGIRAVHE-GEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGE 191 N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ + Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQAGAPQLEETPYPLVDD 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K + Sbjct: 182 LERFYQHLEQTLQHSGFIRPSH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240 Query: 252 QSS 254 Sbjct: 241 HQG 243 >gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2148] Length = 250 Score = 321 bits (823), Expect = 7e-86, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 138/249 (55%), Gaps = 6/249 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+LV+ NIG VARAM N L++L LV PR +P E+A +A+A V+D+ Sbjct: 2 NLNNIRIVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQ-FPDEQADWRAASAADVLDT 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L+EAIAD F+ T+AR R +L P++ A + + + V ++FGRE Sbjct: 61 AVVTESLEEAIADCQFVVGTSARGRRIPWPLLDPRQCAERM-ALASNDEQVAVLFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTPAT 188 GLTN+E+ L N ++ P + + SLN++ AV ++ +E NS + + +E +TP T Sbjct: 120 GLTNDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELRMLLNSPLLPKTEDEEWDTPFT 179 Query: 189 KGE-LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 GE + F +LE +L + + P ++++ L ++ R L E+ +LRGI++ Sbjct: 180 TGENMERFYSHLEETLTDIEFLDPA-APRQLMVRLRRLYSRVRLDEMELNILRGILTETQ 238 Query: 248 KFSRQSSRR 256 K+ +S + Sbjct: 239 KWVSKSKNK 247 >gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII] gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis YPIII] Length = 257 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGKATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + N E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R K++ Sbjct: 241 DKYPQRGTGDTADKSKD 257 >gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida GB-1] Length = 251 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+D+ Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +L++A+ + + T+AR R+ ++ P+E E G+ + ++FGRE G Sbjct: 61 LVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + E K + A Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPEKVEKVDATELA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239 Query: 248 KFSRQSSRR 256 K R + Sbjct: 240 KVVRGEPHK 248 >gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus Ueda107] Length = 286 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 11/256 (4%) Query: 8 LQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + N+A P I+LV+ NIG ARAM N L +L LV P++ +PS+KA +A Sbjct: 1 MSNAANAPFANIRIVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKE-YPSDKAVWRAAG 59 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A V+D+ V L EAIA + T+AR R +L P++ + + V + Sbjct: 60 ATDVLDNAVVVETLDEAIAGCSLVVGTSARERRIPWPLLDPRQCGESIWAEAGEHE-VAV 118 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KN 179 +FGRE GLTNEE+ + P N + SLN++ AV ++ +E + + E N Sbjct: 119 VFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIRMAYLQAVEGKSLPN 178 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 PA G L ++ +LE +L + G+ P + K+ + L ++ R L + E+ +L Sbjct: 179 HHWDMPPADAGALENYYQHLEQALVDLGFLDP-DNPKQTMTRLRRLYNRVRLDQMELNIL 237 Query: 240 RGIVSTLDKFSRQSSR 255 RG+++ + + + + Sbjct: 238 RGVLTAMQNYVYYTGK 253 >gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 241 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A+ + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TIVDSLDQALEGCSLVVGTSARSRTLPWPMLDPRECGVRSAQEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ P NP + SLN++ AV ++ +E + + K E++ Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQVGKPEHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K Sbjct: 180 DDLERFYQHLEETLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium opportunistum WSM2075] Length = 306 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 135/252 (53%), Positives = 178/252 (70%), Gaps = 2/252 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 SA GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+ Sbjct: 11 SAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDA 70 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FGRER+ Sbjct: 71 VKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTGILFGRERF 130 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPAT 188 GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + + PA+ Sbjct: 131 GLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETRTNFSGPDMKPAS 190 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+ Sbjct: 191 KEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSLDR 250 Query: 249 FSRQSSRRNNVL 260 FS R + Sbjct: 251 FSPAMPRGDGSP 262 >gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua] gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516] gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F] gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola] gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1] gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92] gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10] gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar Microtus str. 91001] gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP 32953] gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516] gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua] gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92] gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F] gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125] gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis IP 31758] gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis Angola] gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pseudotuberculosis PB1/+] gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516] gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A] gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004] gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038] gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM D27] gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003] gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 257 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGKATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + N E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R K++ Sbjct: 241 DKYPQRGTGDTAGKSKD 257 >gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 241 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+ + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + + + + E++ Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPESQELNILRGILSSVQKT 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 241 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+ + T+AR+R +L P+E I + V ++FGRER G Sbjct: 61 TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRSAQEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + + + + E++ Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPESQELNILRGILSSVQKT 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893] gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893] Length = 284 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 17/259 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG VARAM N L L LVNP +P E + + +A A ++D V Sbjct: 18 IRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-VSFPDEASYARAAGASDILDKATVV 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S L EAIAD + T+AR R V+AP AA +++ +GQ V ++FGRE GL+N Sbjct: 77 STLDEAIADCVCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQ-VALVFGRENHGLSN 135 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------------SEKNV 180 EE+ + I P NP + SLN++ AV +M +E + + + + Sbjct: 136 EELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLKGLEGGDGSPYLKPMMAPGDE 195 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 PA ++ F +LE L + + R + ++++ L +F R L + E+ +LR Sbjct: 196 GWDVPPAPVRDVEGFFSHLEQVLVDVDFHR-RDNPRQLMTRLRRLFQRAGLDQMEINILR 254 Query: 241 GIVSTLDKFSRQSSRRNNV 259 GI++ + K + + N Sbjct: 255 GILTAVQKSAGAAETAKNT 273 >gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSISEAEQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189 LTNEE+ + ++ NP + SLN++ AV ++ +E + + EK V+ + A Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKPVEPKEETAYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRMFTRARPESQELNILRGILASIEQK 238 Query: 250 SRQ 252 +++ Sbjct: 239 NKE 241 >gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter cancerogenus ATCC 35316] Length = 263 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 24 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 82 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 83 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAVQ-APVALVFGRERVG 141 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + EK +E+ Sbjct: 142 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKARTEPQEEKAYPL 201 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++++ Sbjct: 202 VDDLERFYGHLEQTLLSTGFIR-QDHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 260 Query: 249 FSR 251 ++ Sbjct: 261 KNK 263 >gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 303 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 135/262 (51%), Positives = 179/262 (68%), Gaps = 2/262 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD Sbjct: 5 DFQRGPGGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADH 64 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 VID+V+VF +L A+ADL+F++ATTAR R+ FK+V P EA VL R GQ GI+FG Sbjct: 65 VIDAVKVFDDLASALADLNFVFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFG 124 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQN 184 RER+GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K + Sbjct: 125 RERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPEM 184 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+K EL YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S Sbjct: 185 KPASKEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIIS 244 Query: 245 TLDKFSRQSSRRNNVLLQKTEK 266 +LD+FS R + + Sbjct: 245 SLDRFSPAMPRGDGSPGDDPRR 266 >gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 155-74] Length = 245 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17] gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17] Length = 290 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 17/254 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG VARAM N L L +VNPR +P E + + +A A V+D+ V Sbjct: 18 IRIVLVETSHSGNIGAVARAMKNMGLGNLWMVNPR-SFPDETSYARAAGASDVLDTATVV 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+AD + T+AR R V+ P +AA G V ++FGRE GL+N Sbjct: 77 GSLDEALADCVLVMGTSARGRKVPWPVMPPDQAATAAASHCGQG-TVALVFGRENHGLSN 135 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--------------VSSEKNV 180 EE+ + I P NP + SLN++ AV +M +E + + ++ + Sbjct: 136 EELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLKGLESDARRPYLERIAQPGDA 195 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 PA+ G++ F +L+ LEE + R +K ++++ L +F R ++ + EV +LR Sbjct: 196 GWDVAPASVGDVEGFFGHLQQVLEEIDFHR-RDKPRQLMARLRRLFQRAKMDQMEVNILR 254 Query: 241 GIVSTLDKFSRQSS 254 G++S + K + S Sbjct: 255 GVLSAVQKTAGASG 268 >gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM 30120] Length = 243 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 7/245 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + Sbjct: 2 LENIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHSIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L EA+ + T+AR+R ++ P+E + E+ V I+FGRER G Sbjct: 61 KVVKSLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQAKD-APVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPA 187 LTNEE+ N + P NP + SLN++ AV L+ +E + +EKN V ++ Sbjct: 120 LTNEELQRCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAIAEKNTQTSVDDEVEYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++ Sbjct: 180 PAEDLERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSME 238 Query: 248 KFSRQ 252 K++++ Sbjct: 239 KWAKK 243 >gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55] Length = 244 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEQAQPAVDHEEAPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE +L G+ RP ++++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYGHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238 Query: 248 KFSR 251 + ++ Sbjct: 239 QQNK 242 >gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp. JE062] Length = 256 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 119/252 (47%), Positives = 169/252 (67%), Gaps = 3/252 (1%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ P+ N+A PV++L +PQLGENIGMVARAM NF L LRL+NPRDGWPSEKARS+ Sbjct: 1 MSESTPET-NTAIPPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSA 59 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S+ A VID+ RVF +++EA+ADL ++ATTAR+R+ K V+ P EAA + G Sbjct: 60 SSRAHHVIDAARVFDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIP 119 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 G +FGRERWGL N+E+AL+N I++ PV+P + SLNI+QAVL+ +E + + Sbjct: 120 SGYLFGRERWGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRRVATAGALPFS 179 Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + + PAT+ + D+LE L+ RG+FRPVEKK + L +IF + +L EV + Sbjct: 180 LDDYEGEPATQESIQRMFDHLESGLDARGFFRPVEKKPVTIRRLRNIFQKADLTDNEVRI 239 Query: 239 LRGIVSTLDKFS 250 +RG++S +K+ Sbjct: 240 MRGVISCFEKYG 251 >gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 248 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L +A+ + T+AR+R +L P+E VL+ + V I+FGRER G Sbjct: 61 TIVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VLSIQEAQHAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + ++ E++ Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQQGEVAHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K Sbjct: 180 DDLERFYQHLEDTLLHTGFIRQSHQ-GQVMNKLRRLFTRARPETQELNILRGILSAITKT 238 Query: 250 SRQSSRRNN 258 + +NN Sbjct: 239 TPSDPSQNN 247 >gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 4/243 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG ARAM L+QL LV+P P KA + +A A V+ + Sbjct: 2 LENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKASALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ S L EA+AD + T+AR+R +L P+ L + V ++FGRE G Sbjct: 61 KIVSTLAEAVADCGLVVGTSARSRTLSWPMLEPRGCGEKLVSEVPK-YPVALVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+N+E+ + + P NP + SLN++ AV + +E + + + ++ P + Sbjct: 120 LSNDELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRRESVQEEYP-LAED 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L + + P ++ L +F R +E+ +LRGI+++++K S+ Sbjct: 179 LEGFYSHLEQTLFKTNFIIPKH-PGMVMTKLRRLFNRARPETQELNILRGILASIEKTSK 237 Query: 252 QSS 254 ++ Sbjct: 238 ENK 240 >gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia symbiotica str. Tucson] Length = 244 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 5/241 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNAAL 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +AI + T+AR+R +L P+E + + V ++FGRER GLT Sbjct: 63 VDTVDDAINGCSLVVGTSARSRTLPWPMLEPRECGVRAV-QAGEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGE 191 N+E+ + ++ P NP + SLN++ AV ++ +E + + +E+ + Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYELRVAYLDRQQTGGTPQEETPYPLVDD 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L+ G+ RP +++ L +F R +E+ +LRG++++++K + Sbjct: 182 LERFYQHLEQTLQRTGFIRPAH-PGQVMSRLRRLFTRARPEEQELNILRGMLTSIEKQDK 240 Query: 252 Q 252 Sbjct: 241 N 241 >gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021] gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti AK83] gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti BL225C] Length = 276 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 130/258 (50%), Positives = 185/258 (71%), Gaps = 2/258 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID + Sbjct: 13 EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ L+EA+ADL+F+YATTAR+R+ FK V +P AA L R G+ VGIIFGRER GL Sbjct: 73 LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190 TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++ + S ++ Q PATK Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMTSEDETSFQASQQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L ++LE +L+ R YFR +KK K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252 Query: 251 RQSSRRNNVLLQKTEKSE 268 R++ R + + K + Sbjct: 253 RENPRGSAAPPGHSRKEQ 270 >gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida W619] Length = 251 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N LT+L LV P++ +P+ A + ++ AD V+ Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKE-FPAADASARASGADDVLAGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L++A+ + T+AR R+ ++ P+E E G+ + ++FGRE G Sbjct: 61 QVVDSLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + K + + A Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAEGTAQKVEKADASELA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F ++LE +L + G+ P EK K ++ L ++ R + R E+ +LRGI++ Sbjct: 181 TMDEMELFYEHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQ 239 Query: 248 KFSRQSSRR 256 K +R + Sbjct: 240 KVARGEPHK 248 >gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rettgeri DSM 1131] Length = 243 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 7/245 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM L+ L LVNP P + + SA A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHSIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+ + T+AR+R ++ P+E + E+ V I+FGRER G Sbjct: 61 TIVKTLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQSKE-SPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPA 187 LTNEE+ + P NP + SLN++ AV L+ +E + +EKN ++ Sbjct: 120 LTNEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLSMNEKNTVISADDEVEYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++ Sbjct: 180 PSEDVERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHIETQELHILRGILTSME 238 Query: 248 KFSRQ 252 K++++ Sbjct: 239 KWAKK 243 >gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 244 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F D+LE +L G+ RP ++++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238 Query: 248 KFSR 251 + ++ Sbjct: 239 QQNK 242 >gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 249 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L +A+ + T+AR+R +L P+E + + V I+FGRER G Sbjct: 61 TIVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSIQEAQR-APVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + S ++ E++ Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDSQQQGEPAHEESPYPLA 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K Sbjct: 180 DDLERFYQHLEETLLHTGFIRQAHQ-GQVMNKLRRLFTRARPENQELNILRGILSAITKT 238 Query: 250 SRQSSRRNN 258 + + + + Sbjct: 239 ASSTDKPQD 247 >gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ A + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + SE+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAVSERGEAPKTASAHSAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKVARGEPYK 250 >gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia rustigianii DSM 4541] Length = 243 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 7/245 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM L+ L LVNP P A + SA A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ ++L EA+ + T+AR+R ++ P+E + ++ V IIFGRER G Sbjct: 61 KIVTSLDEALEGCKLVIGTSARSRTLPWPMVEPRECGVKSVQQSNE-SPVAIIFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ N + P NP + SLN++ AV L+ +E + +EKN + ++ Sbjct: 120 LTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAINEKNTQKSAVDEVEYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L E G+ R +++ L +F R + +E+ +LRGI+++++ Sbjct: 180 PAEDLERFYVHLETVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSME 238 Query: 248 KFSRQ 252 K++++ Sbjct: 239 KWAKK 243 >gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 304 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 134/249 (53%), Positives = 175/249 (70%), Gaps = 2/249 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V V Sbjct: 14 GPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVTV 73 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L A+ADL+F++ATTAR R+ FKSV P EA +L R GQ GI+FGRER+GL Sbjct: 74 FDDLASALADLNFVFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFGLY 133 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191 N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ + K PA+K E Sbjct: 134 NDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPDMKPASKEE 193 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L YLE +LE RGYFRP KK KM+D+L ++ R E+ +LRGI+S+LD+FS Sbjct: 194 LHGLFAYLEGALEARGYFRPAPKKPKMIDNLRAVLTRAGFAEPELKVLRGIISSLDRFSP 253 Query: 252 QSSRRNNVL 260 R + Sbjct: 254 AMPRGDGSP 262 >gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 241 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 5/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAEQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + + EK KE+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKVAEPKEETAYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQK 238 Query: 250 SRQ 252 +++ Sbjct: 239 NKE 241 >gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii] Length = 257 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P + +PS +A + ++ A ++D+ Sbjct: 2 LQSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ T+AR+R +L P+E A E++ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTNEE+ + P +P F SLN++ AV ++V+E + + K++ Sbjct: 121 LTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAML 180 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PAT EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI Sbjct: 181 NSQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGI 239 Query: 243 VSTLDKFSR 251 ++ K +R Sbjct: 240 LTETQKAAR 248 >gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 241 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+ + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ P NP + SLN++ AV ++ +E + + + + E++ Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ] Length = 258 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P + +PS +A + ++ A ++D+ Sbjct: 3 LQSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ T+AR+R +L P+E A E++ G V ++FGRE G Sbjct: 62 QVVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTNEE+ + P +P F SLN++ AV ++V+E + + K++ Sbjct: 122 LTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAML 181 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PAT EL F +LE +L E G+ P EK + ++ L ++ R + + E+ +LRGI Sbjct: 182 NSQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGI 240 Query: 243 VSTLDKFSR 251 ++ K +R Sbjct: 241 LTETQKAAR 249 >gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 4/239 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG ARAM L++L LV+P S +A + +A A V+ + + Sbjct: 6 IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-QASALAAGATDVLGNAVIV 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++EAIAD T+AR+R ++ P+E L +G V ++FGRE GLTN Sbjct: 65 GTVEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAVNG-PVALVFGRENSGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193 EE+ L N + P NP + SLN++ AV + +E + K V+E + + + Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLSYETRMAFLNQQPKKVEEDDAVYPSSKQTE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F ++LE +L + G+ + ++ L +F R E+ +LRGI+++++K + Sbjct: 184 LFYEHLEETLFKTGFIIK-QHPGLVMTKLRRLFNRAHPEDAEMNILRGILTSINKSIPK 241 >gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-TNSPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E + E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQESDKTIDYEEAEYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 241 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 5/239 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG ARAM L++L LV+P S A + +A A V+ + + Sbjct: 6 IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALAAGATDVLGNAVIV 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +AIAD T+AR+R ++ P+E L +G V ++FGRE GLTN Sbjct: 65 DSVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVGEAVNG-PVALVFGRENSGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGEL 192 EE+ L N + P NP + SLN++ AV + +E + K V+E++ + + Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKAVQEEDDTLYPSSKQT 183 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F ++LE +L + G+ + ++ L +F R E+ +LRGI+++++K + Sbjct: 184 ELFYEHLEDTLFKTGFIIK-QHPGMVMTKLRRLFNRARPEDAEMNILRGILTSINKSIK 241 >gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234] Length = 275 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 129/255 (50%), Positives = 188/255 (73%), Gaps = 2/255 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +GP IIL PQLGENIGMVARAM NF L++LRLVNPRDGWP+EKARS+++ AD VID + Sbjct: 13 EGPAIILAYPQLGENIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGAK 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++++L+EAIADL+F+YATTAR+R+ +K V +P AA L +R G+ +GIIFGRER GL Sbjct: 73 LYNSLEEAIADLNFVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTGL 132 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKG 190 TNEE+AL++ I++FPVNP F SLN++QAVLLM +E M+ + S ++ + + PATK Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMKTGMESEDQTSFQAIEQRPATKE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L D+LE +L+ R YFR +K+ K++++L ++ RP E+ +LRG++S+LD+F+ Sbjct: 193 HLQGLFDHLEDALDARNYFRSADKRPKLVENLRAVLTRPSFSESEIQVLRGVISSLDRFT 252 Query: 251 RQSSRRNNVLLQKTE 265 R++ R + + + Sbjct: 253 RENPRGSGAPARSRK 267 >gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby] gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b] Length = 257 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ Sbjct: 3 LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + L EA+ I T+AR R L P A ++N++ V I+FGRE G Sbjct: 62 VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT E Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248 + F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239 Query: 249 FSRQSSRRN 257 ++R+ +R N Sbjct: 240 WARKDNRSN 248 >gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 244 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F D+LE +L G+ RP ++++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238 Query: 248 KFSR 251 + ++ Sbjct: 239 QQNK 242 >gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR] gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR] Length = 240 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 3/237 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ NIG VARAM L++L LV+P P A + +A A ++ S Sbjct: 2 LDNIRIVLVNTSHTGNIGSVARAMKTMGLSKLTLVDPVQE-PDSHASALAAGATDILASA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+EAIAD + AT+ARNR +L P+E A + E Q V ++FGRE G Sbjct: 61 TIVDTLQEAIADCGLVIATSARNRTLDWPLLGPRECAAKVLEETSQHQ-VALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ S + P NP + SLN++ AV + +E + S ++ + + Sbjct: 120 LTNEELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQWLESKQRAPENLPEYPRAED 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F ++LE +L + G+ P + +++ L +F R E+ +LRGI++++DK Sbjct: 180 LERFYEHLEKTLGQTGFIVP-QHPGQVMTKLRRLFNRARPEENEINILRGILASVDK 235 >gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 241 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 4/242 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM L+Q+ LV+P+ P + A + +A A ++ + Sbjct: 2 LDQIRIVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQ-AQPDDNAYALAAGASDLLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R+ S L EAIAD + T+AR+R +L P+EA L V ++FGRER G Sbjct: 61 RIVSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKLVTEGMQ-HPVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190 LTN+E+ + ++ P NP + SLN++ AV + +E + + + + Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWLQQEQVGETDMAVDYPSAE 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L F +LE +L + G+ + +++ L +F R E+ +LRGI++++ K Sbjct: 180 QLEGFYQHLEQTLLKTGFI-ADDHPGQVMSKLRRLFNRARPEAVELNILRGILTSVQKPR 238 Query: 251 RQ 252 Q Sbjct: 239 PQ 240 >gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Pseudoalteromonas tunicata D2] Length = 249 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV+ NIG VARAM L++L LV+P + S A + +A A V+ + Sbjct: 3 LNDIRVVLVNTSHTGNIGSVARAMKTMGLSKLYLVDPVNQIDS-HASALAAGATDVLGNA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +L +AIAD + T+AR+R ++ P+E +L + G V ++FGRE G Sbjct: 62 VVVDDLAQAIADCSLVIGTSARSRTLSWPMVEPRECGQMLVDGAKKG-PVALVFGRENSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190 L+NEE+ + + + P NP + SLN++ AV + +E + EK V+ ++ + Sbjct: 121 LSNEELQMCHYHVCIPANPEYSSLNLAMAVQTLTYEVRMAFLQQQEKKVEVDETVYPSSQ 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L F +L+ +LE G+ + ++ L +F R E+ +LRGI++++DK Sbjct: 181 QLELFYQHLQNTLENTGFIIK-QHPGLVMTKLRRLFNRARPEDGELNILRGILTSVDKLD 239 Query: 251 RQSSRRN 257 Q+++ N Sbjct: 240 SQATKNN 246 >gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 243 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ESHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 257 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ Sbjct: 3 LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + L EA+ I T+AR R L P A ++N++ + Q V I+FGRE G Sbjct: 62 VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSGNTQ-VAIVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT E Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248 + F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239 Query: 249 FSRQSSRRN 257 ++R+ +R + Sbjct: 240 WARKDNRSD 248 >gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii DFL-11] Length = 270 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 120/257 (46%), Positives = 176/257 (68%), Gaps = 4/257 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR++++ AD VID Sbjct: 15 TARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVIDK 74 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF + AIADL+F+YATTAR+R K V P EAA+ + VG +FGRERW Sbjct: 75 VQVFETTEAAIADLNFVYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLFGRERW 134 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188 GL NEE+AL++ I++ PV+P F SLNI+QAVL+ +E + + + +E++ PA+ Sbjct: 135 GLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASKGELPFLLSEEEHPPAS 194 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K ++L ++LE SL+E +FRP E++ M+ +L +IF + EL ++EV LRG+++ L++ Sbjct: 195 KDDILRMFEHLESSLDEVSFFRPPERRPHMVRNLRNIFQKAELSQQEVRTLRGVIAALER 254 Query: 249 FSRQSSRRNNVLLQKTE 265 R++ R + +TE Sbjct: 255 --RETRPRKTGDVDETE 269 >gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739] gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1827-70] gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482] Length = 246 Score = 317 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198] Length = 252 Score = 317 bits (814), Expect = 8e-85, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 6/247 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ + IILV+ N+G ARAM LT L VNP++ P + + SA A VI Sbjct: 9 KSMLENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVI 67 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + +++ EAI + T+AR+R +LAP+E + V IIFGRE Sbjct: 68 GNAHIVNSIDEAIEGCGLVIGTSARSRTLSWPMLAPRECGERCV-MEAKHKPVAIIFGRE 126 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNT 185 R GLTNEE+ + + P NP + SLN++ AV L+ +E ++ EK N + Sbjct: 127 RTGLTNEELQKCDFHLYVPTNPEYGSLNLAMAVQLVSYEIRMAALAQEEKQEENSPSEID 186 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 ++ F +LE L E G+ RP +++ L +F R +E+ +LRGI+++ Sbjct: 187 YPPADDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTS 245 Query: 246 LDKFSRQ 252 ++K++++ Sbjct: 246 VEKWAKK 252 >gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 244 Score = 317 bits (814), Expect = 8e-85, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L +A+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENPDAAAHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRG+++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGMLASIEQ 238 Query: 249 FSRQSS 254 ++ Sbjct: 239 LKKEKP 244 >gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 241 Score = 317 bits (814), Expect = 8e-85, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G VARAM L++L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A+ + + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TLVDSLDQALEGCNLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ P NP + SLN++ AV ++ +E + + + + E++ Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L + G+ RP + ++++ L +F R +E+ +LRGI+S++ K Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato str. DC3000] gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 257 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L +F R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYGHLETTLVNIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 1180] Length = 245 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFSRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4] gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica PV-4] Length = 252 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 4/255 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P ++ + +A A ++ Sbjct: 2 LSNIRVVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVA-PDGQSVALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L++AIAD + AT+AR+R +L P++A L +G V I+FGRE G Sbjct: 61 VTVDCLEDAIADCSLVIATSARSRTLDWPMLDPRQAGEKLAGAAVNG-PVAIVFGRESNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+N+E+ N ++ P NP + SLN++QAV ++ +E + + V+EQ P K + Sbjct: 120 LSNDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAKEQ 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +F +LE +L G+ + +++ L +F R + +E+ +LRGI++++DK Sbjct: 180 -ENFFVHLEKTLLSTGFIIK-QHPGQVMTKLRRLFSRARIESQEMNILRGILTSVDKKVE 237 Query: 252 QSSRRNNVLLQKTEK 266 + + E+ Sbjct: 238 LAQQATQDAQSTKEE 252 >gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + + V I+FGRER G Sbjct: 61 SIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-THAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTN+E+ + ++ NP + SLN++ AV ++ +E + S + E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLASQDAQTPAPGEEETPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F +LE L G+ RP ++++ L +F R +E+ +LRG++++++ Sbjct: 180 LVDDLERFYGHLEQVLLSTGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238 Query: 248 KFSRQSS 254 + Sbjct: 239 SSRNEKP 245 >gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris] Length = 257 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+ L LVNP+ +P KA+ +A AD V+D+ Sbjct: 3 LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + L EA+ I T+AR R L P A ++N++ V I+FGRE G Sbjct: 62 VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT E Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248 + F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239 Query: 249 FSRQSSRRN 257 ++R+ +R N Sbjct: 240 WARKDNRSN 248 >gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 EDL933] gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046] gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A] gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1] gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9] gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str. EDL933] gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046] gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197] gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli] gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli] gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1] gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli O55:H7 str. CB9615] gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B] gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. G5101] gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. 493-89] gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H- str. H 2687] gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O55:H7 str. USDA 5905] gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia coli O157:H7 str. LSU-61] gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella sonnei 53G] gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120] gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str. 1044] gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA271] gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H591] gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 5216-82] gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp. D9] Length = 245 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 251 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P++ +P+ A + ++ AD V+ + Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V +L++A+ + + T+AR R+ ++ P+E G+ + ++FGRE G Sbjct: 61 QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + + P NP F SLN++ AV ++ +E + + + + + A Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAGVAPAQVEKVDASELA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F D+LE +L G+ P K K ++ L ++ R + R E+ +LRGI++ Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDPA-KPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239 Query: 248 KFSRQSSRR 256 K R + Sbjct: 240 KVVRGEPHK 248 >gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella dysenteriae 1617] Length = 245 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVT-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 257 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 KVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens] Length = 257 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+ L LVNP+ +P KAR +A AD V+D+ Sbjct: 3 LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAREMAAGADDVLDAA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + L EA+ I T+AR R L P A ++N++ V I+FGRE G Sbjct: 62 VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + I+ P NP + SLN++QAV ++ +E + S + PAT E Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248 + F ++L+ E + +P ++++ + +F R L + EV +LRG++S + K Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239 Query: 249 FSRQSSRRN 257 ++R+ +R + Sbjct: 240 WARKDNRSD 248 >gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] Length = 246 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIREKH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 242 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L +A+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ N ++ NP + SLN++ AV ++ +E + + E K E+ Sbjct: 120 LTNDELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQENGDKAEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSRQ 252 +++ Sbjct: 239 KNKE 242 >gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 243 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEAPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536] gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 246 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPILDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073] gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227] gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89] gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401] gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1] gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS] gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5] gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88] gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a] gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989] gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026] gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972] gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952] gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606] gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B] gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354] gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50] gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101] gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736] gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli CFT073] gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301] gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 2457T] gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227] gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89] gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401] gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1] gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989] gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88] gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a] gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026] gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli LF82] gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972] gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)] gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella flexneri 2002017] gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354] gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia coli FVEC1302] gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101] gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146] gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 2362-75] gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2a str. 2457T] gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W] gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1] gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli 3431] gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83] gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli LT-68] gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli RN587/1] gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520] gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252] gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263] gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489] gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007] gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167] gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86] gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H736] gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M605] gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli M718] gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA206] gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA143] gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli TA280] gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella boydii 3594-74] gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88] gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 4343-70] gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-671] gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri 2747-71] gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71] gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri VA-6] gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-218] gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-272] gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-227] gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein [Shigella flexneri K-304] Length = 246 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 243 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEMPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7] gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7] Length = 308 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 11/246 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 56 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 114 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+EA+ + T+AR+R +L P+E A E + + ++FGRE GLTN Sbjct: 115 DSLEEALVGCSVVLGTSARDRRIPWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTN 174 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185 EE+ + P +P F SLN++ AV ++ +E + + K K + Sbjct: 175 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 234 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 235 LVTADELELYYAHLEKTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 293 Query: 246 LDKFSR 251 K +R Sbjct: 294 TQKVAR 299 >gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327] gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Escherichia coli H299] Length = 246 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQAEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1] Length = 279 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 125/270 (46%), Positives = 178/270 (65%), Gaps = 2/270 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M QN GP+I+LV+PQL ENIGMVARAM NF L+ LRLV PR+ +P+EKAR++ Sbjct: 1 MAGTNRSRQNIMNGPIIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +ID+ VF+ L +AIADL+++ TTAR R FK+V + EAA +L G Sbjct: 61 ASKADHIIDNALVFNTLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +GI+FGRERWGL N+EI+ ++ I++FPVNP F SLNI+QAVLLM +E M++ + Sbjct: 121 IGILFGRERWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLDDLNDTA 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + A K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R +L E+ L Sbjct: 181 FRVAEMKSADKATLHGFLSQLENALDSRGYFRPQERKEVMVLNIRSVFTRAKLSESEIRL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 LRG++S+LD FS + R + + + K + Sbjct: 241 LRGVISSLDHFSPEFPRGSGAPVGRNRKKK 270 >gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia rohdei ATCC 43380] Length = 257 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM L+ L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCNLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 NEE+ + ++ P NP + SLN++ AV ++ +E + + + Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLDRQQAAAPLVEEVEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R + K K Sbjct: 241 DKCPPRATDDSEHKEIK 257 >gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6] Length = 256 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 130/249 (52%), Gaps = 11/249 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG VARAM N LT+L LV PR +P +A + ++ A+ +++ Sbjct: 2 LQNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPR-VFPHHEADARASGANDLLEKA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + + T+AR+R +L P+E + G + ++FGRE G Sbjct: 61 QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTNEE+ + + P +P F SLN+ AV ++ +E + ++ + K + Sbjct: 121 LTNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVRMAWLAAAGQPSKMEKEEVASTK 180 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT EL F ++LE +L + P EK + ++ L ++ R + R E+ +LRGI Sbjct: 181 SGELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239 Query: 243 VSTLDKFSR 251 ++ K +R Sbjct: 240 LTETQKAAR 248 >gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863] gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509] gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227] gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli STEC_7v] Length = 246 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + +SE+ ++ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas sp. SN2] Length = 255 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 4/256 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV NIG ARAM L+ L LVNP P +A + +A A V+ + Sbjct: 2 LENIRIILVSTSHTGNIGSTARAMKTMGLSSLYLVNP-VHEPDGQASALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ S L+EA++D + T+AR+R + +L P+E L + + S V ++FGRE G Sbjct: 61 KIVSTLEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEV-SNFPVALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ + + P NP + SLN++ AV + +E + E+ P + Sbjct: 120 LSNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYP-LNED 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +LE + R ++ L +F R +E+ +LRGI++++DK + Sbjct: 179 LERFYTHLETTLESTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237 Query: 252 QSSRRNNVLLQKTEKS 267 + + +S Sbjct: 238 APAPEPEPEIDNDNES 253 >gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15] Length = 246 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLASGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7] gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7] Length = 241 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +ILV NIG ARAM L+ L L PR ++ + +A A ++ + Sbjct: 2 LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE G Sbjct: 61 VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ ++ P NP + SLN++QAV ++ +E + +E E+ P + + Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-AD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237 Query: 252 QSSR 255 + Sbjct: 238 NKQK 241 >gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905] Length = 245 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANI-PVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 261 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 4/243 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ NIG ARAM L+ L LV+P + P +A + +A A V+ + Sbjct: 2 LENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVNE-PDGQASALAAGAGDVLANA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+EA+ D + T+AR+R + +L P++ L + + V ++FGRE G Sbjct: 61 KIVGTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + + P NP + SLN++ AV + +E + E+ P + Sbjct: 120 LTNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAFLNRETYPSVEETYP-LNED 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +LE + R ++ L +F R +E+ +LRGI++++DK + Sbjct: 179 LERFYAHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237 Query: 252 QSS 254 +S Sbjct: 238 SAS 240 >gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L +A+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAV-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E + E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1] gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192] gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58] gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 257 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA++ + T+AR+R +L P+E A E + + V ++FGRE GLTN Sbjct: 64 DTLEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185 EE+ + P +P F SLN++ AV ++ +E + + K K + Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242 Query: 246 LDKFSRQSSRR 256 K +R S + Sbjct: 243 TQKVARGLSYK 253 >gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] Length = 246 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + +SE+ ++ Sbjct: 120 LTNEELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 254 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEASRPASAHNAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKAARGEPYK 250 >gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 257 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGEAPKATSAH 180 Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPHK 253 >gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia odorifera DSM 4582] Length = 241 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EAIA + T+AR+R +L P+E + + V ++FGRER GLT Sbjct: 63 VDTFDEAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVQE-GEQAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KG 190 N+E+ + ++ P NP + SLN++ AV ++ ++ + + + A Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVRVAYLERQQADAPPAPQEAAYPLVD 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L F +LE +L G+ RP +++ L +F R +E+ +LRG+++++DK Sbjct: 182 DLERFYQHLEQTLSTTGFIRPTH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIDKQI 240 Query: 251 R 251 + Sbjct: 241 K 241 >gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 257 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter youngae ATCC 29220] Length = 243 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI S Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-TNSPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT--- 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E + + A Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 246 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 287 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 19/269 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG VARAM N L L LVNP +P E + + +A A V+DS V Sbjct: 18 IRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-SSFPDEASYARAAGASDVLDSAHVV 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+L EA+AD + T+AR R V AP EAA E SG V ++FGRE GL+N Sbjct: 77 SSLDEALADCVLVMGTSARGRKVPWPVCAPPEAAAAAAEHAGSG-PVAMVFGRENHGLSN 135 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------------SEKNV 180 +E+ + I P NP + SLN++ AV +M +E + S + Sbjct: 136 DELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLRSLEGGEGSPYLKSMTRPGDE 195 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 PA ++ F +LE L + + R E ++++ L +F R L + E+ +LR Sbjct: 196 GWDVPPAKVHDVEGFFGHLEQVLIDVDFHR-RENPRQLMTRLRRLFQRARLDQMEINILR 254 Query: 241 GIVSTLDKFS--RQSSRRNNVLLQKTEKS 267 GI++ + K + R +S+ TE+ Sbjct: 255 GILTAVQKAAGTRNNSKSTEADTAATEQD 283 >gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 257 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------E 182 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGGTPKAVSAH 180 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 278 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 132/261 (50%), Positives = 177/261 (67%), Gaps = 2/261 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI Sbjct: 9 KNLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L++AIADLH+++ATTAR R FK+V + EAAI+L +R Q GI+FGRE Sbjct: 69 NDAVIFDTLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + + Q P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLEDANDTAFRAVQMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LRGI+S+L Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRFLRGIISSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEKS 267 D FS + R + + K Sbjct: 249 DHFSPKFPRGSGAPADRDRKK 269 >gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 255 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQQGEASKPASAHNA 180 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 ELATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLT 239 Query: 245 TLDKFSRQSSRR 256 K +R + Sbjct: 240 ETQKAARGEPYK 251 >gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia frederiksenii ATCC 33641] Length = 256 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 6/258 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + + R V ++FGRER G Sbjct: 61 TIVDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPAT 188 LTN+E+ + ++ P NP + SLN++ AV ++ +E + + +E+ Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAPIVEEEEAPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 180 VDDLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 238 Query: 249 FSRQSSRRNNVLLQKTEK 266 + R + + Sbjct: 239 QDKYPQRSADSSGHDDKN 256 >gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 254 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEAFRPASAHNAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L G+F P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYIHLEATLVAIGFFDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKAARGEPYK 250 >gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042] Length = 246 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3] gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3] Length = 241 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +ILV NIG ARAM L+ L L PR ++ + +A A ++ + Sbjct: 2 LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLTG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ ++ P NP + SLN++QAV ++ +E + +E E+ P + + Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-AD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237 Query: 252 QSSR 255 + Sbjct: 238 NKQK 241 >gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 254 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGDASRPASAHNAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKAARGEPYK 250 >gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv. syringae B728a] gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHNAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKAARGEPYK 250 >gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 257 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++S Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L++A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 KVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + + + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAALAHSEQGETPKAVSAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus bovienii SS-2004] Length = 244 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 8/246 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM LT L LVNP P + + SA A VI + Sbjct: 2 LENIRIILVETSHTGNMGSAARAMKTMGLTNLYLVNPLVQ-PDSHSIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L EA+A + T+AR+R ++ P+E + V ++FGRER G Sbjct: 61 TIVNTLDEALAGCELVIGTSARSRTLSWPMVEPRECGERCI-KAAGHSPVAVVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTP 186 LTNEE+ N + P NP + SLN++ AV L +E + EK + + + Sbjct: 120 LTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLASYEIRMAYLAVQEKSEHVESTEHEVEY 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 ++ F +LE L + G+ R ++++ L ++ R +E+ +LRGI++++ Sbjct: 180 PPVEDMERFYQHLEQVLNDSGFIRKAH-PGQIMNKLRRLYTRARPETQELNILRGILTSM 238 Query: 247 DKFSRQ 252 K+S + Sbjct: 239 GKWSGK 244 >gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 243 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNG 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family) [Pseudoalteromonas haloplanktis TAC125] Length = 241 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 4/239 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+ NIG ARAM L++L LV+P S A + +A A V+ + + Sbjct: 6 IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALAAGASDVLGNAVIV 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +AIAD T+AR+R ++ P+E L +G V ++FGRE GL+N Sbjct: 65 DTVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVSEAVNG-PVALVFGRENSGLSN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193 +E+ L N + P NP + SLN++ AV + +E + K +E +T + + Sbjct: 124 DELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKIAEEDDTVYPSSKQTE 183 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE +L G+ + ++ L +F R E+ +LRGI+++++K + Sbjct: 184 LFYGHLEETLFNTGFIIK-QHPGMVMTKLRRMFNRARPEDAEMNILRGILTSINKSIPK 241 >gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia sp. 3_2_53FAA] Length = 246 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39] gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39] Length = 246 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ AV ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLRATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7] Length = 254 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185 LTNEE+ + + P +P F SLN++ AV ++ +E + ++E+ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHSAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+++ Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239 Query: 246 LDKFSRQSSRR 256 K +R + Sbjct: 240 TQKAARGEPYK 250 >gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4] gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4] Length = 241 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +ILV NIG ARAM L+ L L PR ++ + +A A ++ + Sbjct: 2 LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EAIAD + AT+AR+R +L P+EA L SG V I+FGRE G Sbjct: 61 VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ ++ P NP + SLN++QAV ++ +E + + E+ P + + Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTAAPQVEEEYPLS-AD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237 Query: 252 QSSR 255 + Sbjct: 238 NKQK 241 >gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia kristensenii ATCC 33638] Length = 257 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R +V + Sbjct: 241 DKYPQRGADVSEHNNKN 257 >gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 257 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L +L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVCTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGETPKAASAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+ Sbjct: 181 SAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi DSS-3] Length = 248 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 152/248 (61%), Gaps = 2/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ +A + S+ A + Sbjct: 1 MPSDKAQPAIVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D +++ +L A+ D +++ATTAR R K V +P+ A + E++ +G+ V ++FG Sbjct: 61 LDEAQLYDDLPGALGDCTYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNT 185 ER GL N++IA +NAII+ PVNP + SLN+ Q VLL+ +E M + +V + Sbjct: 121 ERAGLENDDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQTGDVVHLSDAPGPKGE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ ++ E L+E G+F P EK + M +L +++ R L R +V +L GI+ Sbjct: 181 WATGLEIEKLAEHYEQRLDEAGFFFPPEKAEGMQQNLRNLWSRMRLTRADVQMLHGIMRQ 240 Query: 246 LDKFSRQS 253 + ++ + Sbjct: 241 MVRWKERG 248 >gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 241 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 5/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM LT L LVNP P A + SA A VI Sbjct: 2 LENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQ-PDSHAIALSAGASDVIGHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A+A + T+AR+R ++ P+E ++ +V I+FGRER G Sbjct: 61 TIVDSLDKALAGCGLVIGTSARSRTLSWPMVEPRECGERSVQQA-EHASVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV L+ +E + +K + ++ Sbjct: 120 LTNEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKTEQKTDEVEYPLA 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+S+++K+ Sbjct: 180 DDMERFYHHLECVLNDSGFIRKAH-PGQIMNRLRRLFTRARPEMQELNILRGILSSVEKW 238 Query: 250 SRQ 252 +++ Sbjct: 239 AKK 241 >gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 273 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++ Sbjct: 1 MAGTNRKGQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I+ +F L +AIADL+++YATTAR R FK+V + EAA +L G Sbjct: 61 ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTA 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + PA K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ L Sbjct: 181 FRAVELKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 LRG++S+LD FS + R + + K Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269 >gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia enterocolitica W22703] Length = 257 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 7/253 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVSFLDRQQAAAPIVEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQ 262 + R + Sbjct: 241 DKYPQRGADGSEH 253 >gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37] gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas ingrahamii 37] Length = 254 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 4/255 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IIL+ N+G ARAM LT+L LV P K+ + SA A V+ + Sbjct: 2 LENVRIILIGTSHPGNVGSAARAMKTMGLTKLVLVTPECEI-DGKSIALSAGASDVLKNH 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L +AIAD + +AR+R +L P+E + E V ++FGRE G Sbjct: 61 KVCNTLDDAIADCGLVIGASARSRTLDWPMLDPREMGQKVVEEGNK-HPVALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTN+E+ + + P NP + SLN++ AV + +E + S + Q P E Sbjct: 120 LTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVRMEFLASKAYPEQPQEYP-LADE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + ++LE +L++ G+ P +++ L F R +E+ + RGI+S++ K Sbjct: 179 IEGLFNHLEQTLKDTGFIVPAH-PGLVMNKLRRFFNRARPEVKELRMWRGILSSVQKSVS 237 Query: 252 QSSRRNNVLLQKTEK 266 + + N +Q K Sbjct: 238 SAEKEVNQSMQAKNK 252 >gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1] gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1] gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719] Length = 257 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 11/251 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV Sbjct: 5 IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTN Sbjct: 64 DTLEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185 EE+ + P +P F SLN++ AV ++ +E + + K K + Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 T EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242 Query: 246 LDKFSRQSSRR 256 K +R S + Sbjct: 243 TQKVARGLSYK 253 >gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638] gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 244 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTAEA-EHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + EK E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEKGETAEPEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRG+++++ + Sbjct: 180 VDDLERFYGHLEQTLLTTGFIR-ASHPGQVMNKLRRLFTRARPETQELNILRGMLASIIE 238 Query: 249 FSRQSS 254 + S Sbjct: 239 QKNKES 244 >gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein [Escherichia coli EPECa14] Length = 245 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 6/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188 LTNEE+ + ++ NP + SLN++ A ++ +E + + E+ E+ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVRMAWLATQENGEQVEHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R ++++ L +F R +E+ +LRGI++++++ Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238 Query: 249 FSR 251 ++ Sbjct: 239 QNK 241 >gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 257 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 7/253 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQ 262 + R + Sbjct: 241 DKYPQRGADGSEH 253 >gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia aldovae ATCC 35236] Length = 257 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 121/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLERQQAVLPVIETEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEVQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + + Sbjct: 241 DKYPQGSAGDAAPDNKN 257 >gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae pv. tomato T1] Length = 257 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N LT+L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L + G+ P EK + ++ L +F R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 129/261 (49%), Positives = 176/261 (67%), Gaps = 2/261 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL +NIGMVARAM NF L++LRLV PR+ +P++KAR++++ AD VI Sbjct: 9 KNLTNGPIIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F L +AIADLH+++ATTAR R FK+V + EAA +L +R G GI+FGRE Sbjct: 69 NDAVIFDTLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + + + P Sbjct: 129 RWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLENLNDTAFRAAEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEKS 267 D FS + R + + + K Sbjct: 249 DHFSPKFPRGSGAPVDRDRKK 269 >gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 250 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 7/251 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A S +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L EAIA + T+AR+R+ +L +E + E V ++FGRER G Sbjct: 61 KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + ++ NP + SLN++ AV ++ +E + S E+ E++ Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPAPKYEESPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ + Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238 Query: 248 KFSRQSSRRNN 258 K + +N Sbjct: 239 KRKNEKKEADN 249 >gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 250 Score = 314 bits (805), Expect = 8e-84, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 7/251 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A S +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGDA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L EAIA + T+AR+R+ +L +E + E V ++FGRER G Sbjct: 61 KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTNEE+ + ++ NP + SLN++ AV ++ +E + S E+ E++ Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPPPKFEESPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F ++E + G+ R +++ L ++ R R+E+ +LRG++S+ + Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238 Query: 248 KFSRQSSRRNN 258 K + +N Sbjct: 239 KRKNEKKEPDN 249 >gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3] Length = 254 Score = 314 bits (805), Expect = 9e-84, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 6/241 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A I+LV+P NIG VARAM L++L LV P + +P ++A + A+ V++S Sbjct: 2 NADHIRIVLVEPSHPGNIGAVARAMKTMGLSRLVLVAP-EQFPDQQATWRAVWANDVLES 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V + L EAIAD F+ T AR+R VL P+ AA + + G+ V I+FGRE Sbjct: 61 ATVVATLDEAIADCGFVVGTCARDRRLPWPVLDPRRAASEMAAKSRQGE-VAILFGREDN 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPA 187 GL+N+E+ N ++ P + + SLN++ AV ++ +E S + ++ N + A Sbjct: 120 GLSNDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYELHMLVVESSLPTQSNAQWDEPLA 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T+ + F +LE ++ + G+ P ++++ L ++ R + E+ +LRGI++ Sbjct: 180 TQENIERFYVHLEETMSQIGFLNPA-APRQLMPRLRRLYNRLGMDEMELNILRGILTETQ 238 Query: 248 K 248 K Sbjct: 239 K 239 >gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia mollaretii ATCC 43969] Length = 257 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 NEE+ + ++ P NP + SLN++ AV ++ +E + + E+ Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPVIEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R + + Sbjct: 241 GKYPQRDAGHSAENNKN 257 >gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 257 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+ A+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLENALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ + + P +P F SLN++ AV ++ +E + +S + + + Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R E+ +LRG+ Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239 Query: 243 VSTLDKFSRQSSRR 256 ++ K +R + Sbjct: 240 LTETQKAARGEPYK 253 >gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum intermedium LMG 3301] Length = 302 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 123/257 (47%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 33 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 92 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 93 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 152 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V + A K Sbjct: 153 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENETETVFRGPELELAPK 212 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F Sbjct: 213 QELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 272 Query: 250 SRQSSRRNNVLLQKTEK 266 S + R + + K Sbjct: 273 SPKKPRGSGAPDGRARK 289 >gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C] Length = 273 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++ Sbjct: 1 MAGTNRKGQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I+ +F L +AIADL+++YATTAR R FK+V + EAA +L G Sbjct: 61 ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + S Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTA 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + PA K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ L Sbjct: 181 FRAVELKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 LRG++S+LD FS + R + + K Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269 >gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73] gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73] Length = 277 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 127/270 (47%), Positives = 178/270 (65%), Gaps = 2/270 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + QN GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++ Sbjct: 1 MAGTNRKCQNVTNGPIIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I+ +F L++AIADL+++YATTAR R FK+V + EAA +L G Sbjct: 61 ASKADHIINDTLIFDTLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLNDTA 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + PA K L FL LE +L+ RGYFRP E+KK M+ ++ S+F R E+ L Sbjct: 181 FRAVELKPANKATLHGFLSQLEDALDVRGYFRPQERKKVMVTNIRSVFTRANFSESEIQL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 LRGI+S+LD FS + R + L+ + + Sbjct: 241 LRGIISSLDHFSPKFPRGSGAPLEGGDSKK 270 >gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales bacterium Y4I] Length = 250 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 98/250 (39%), Positives = 154/250 (61%), Gaps = 2/250 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A + Sbjct: 1 MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ +++ EA+ D +++ATTAR R K V +P+ A + E+I +G+ V ++FG Sbjct: 61 LDEAQLCADVPEALGDCTYVFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNT 185 ER GL NE+IA +NAIIS PVNPL+ SLN+ Q VLL +E M S +V ++ + Sbjct: 121 ERAGLENEDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQSGDVVHETTDLGRKGD 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT E+ +++ E L+E G+F P EK + M +L +++ R + R +V +L GI+ Sbjct: 181 WATGVEVEKLVEHYEERLDEAGFFYPPEKAEGMKTNLRNLWSRMRMTRSDVQMLHGIMRQ 240 Query: 246 LDKFSRQSSR 255 + ++ + Sbjct: 241 MVRWKERGGE 250 >gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827] Length = 243 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 7/245 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IILV+ N+G ARAM L+ L LVNP+ P A + SA A VI + Sbjct: 2 LDNIRIILVETSHTGNMGSTARAMKTMGLSNLYLVNPQVQ-PDSHAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++L EA+ + T+AR+R ++AP+E + + V IIFGRER G Sbjct: 61 TIVNSLDEALEGCKLVIGTSARSRTLSWPMVAPRECGEKSVMQAKT-APVAIIFGRERIG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPA 187 LTNEE+ + P NP + SLN++ AV L+ +E + EKN +++ Sbjct: 120 LTNEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLALEEKNAVNSEEDEVEYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ F +LE L E G+ R +++ L ++ R + +E+ +LRGI+++++ Sbjct: 180 PVEDIERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLYTRAHIETQELHILRGILTSME 238 Query: 248 KFSRQ 252 K++++ Sbjct: 239 KWAKK 243 >gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia bercovieri ATCC 43970] Length = 257 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + R V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAHLDRLQAAAPIIEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SRQSSRRNNVLLQKTEK 266 + R L + Sbjct: 241 DKYPQRAAGDSLGDGKN 257 >gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 276 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 124/269 (46%), Positives = 174/269 (64%), Gaps = 2/269 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + QN GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++ Sbjct: 1 MAGTNRKCQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD +I+ +F L +AIADL+++YATTAR R FK+V + EAA +L G Sbjct: 61 ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ + Sbjct: 121 TGILFGRERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLSDTA 180 Query: 181 KEQ--NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 PA K L FL LE +L+ RGYFRP E+K+ M+ ++ S+F R E+ L Sbjct: 181 FRAIKLKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 LRG++S+LD FS + R + + K Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269 >gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886] Length = 243 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 6/246 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV NIG ARAM L + LV P +A + +A A + ++ Sbjct: 2 LENIRIVLVGTTHSGNIGSAARAMKVMGLKHMVLVAPECKV-DGQAIALAAGASDIANNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R+ ++EA+AD + T+ARNR+ +L P+E I E V +FGRER G Sbjct: 61 RIVDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEAPQ-HPVAFVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 LTNEE+ N ++ P NP + SLN++ AV + +E I S VKEQ+ P Sbjct: 120 LTNEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEARMAWIDSQAYKGEVKEQSYP-LA 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L++ G+ ++ L +F R +E+ +LRG++S+++K Sbjct: 179 EDLERFYVHLEQVLDKTGFINKSH-PGMVMTKLRRLFNRARPESQELNILRGVLSSVEKQ 237 Query: 250 SRQSSR 255 +++ + Sbjct: 238 MKEAQK 243 >gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13] gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13] gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM 4915] gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13] gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653] Length = 276 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 252 TPKKPRGSGAPEGRARK 268 >gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 242 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 5/242 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+ + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 QIVDTLDEALTGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEA-TNTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAEHEETPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R ++++ L +F R E+ +LRG+++++++ Sbjct: 180 DDLERFYSHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESLELNILRGMLASIEQQ 238 Query: 250 SR 251 ++ Sbjct: 239 NK 240 >gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901] Length = 261 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +++V+ NIG ARAM N L++L LV+P++ +P+EKA +A A V+ Sbjct: 3 EPQFPNIRMVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKE-FPAEKAVWRAAGATDVL 61 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ RV S L EAI+D + T+AR R +L P+E + V ++FGRE Sbjct: 62 ENARVVSTLDEAISDCGLVIGTSARERRIPWPLLTPRECGDRC-WFEAAKHPVAVVFGRE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---- 184 GLTNEE+ N + P NP + +LNIS A+ ++ +E +++ + E + Sbjct: 121 DRGLTNEELHKCNYHVHIPSNPEYSALNISAALQVICYEIRMSALTAQEGKAPHFDDWDM 180 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA G L + +LE +L + + P + ++ + L +F R + + E+ +LRG+++ Sbjct: 181 PPADNGALEHYYAHLEDTLIKLEFLNP-DNPRQTVTRLRRLFNRIRMDQMELNILRGMLT 239 Query: 245 TLDKFSRQSSRR 256 ++ + + + Sbjct: 240 SVQNYIYHTDEK 251 >gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC 25840] gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str. Cudo] gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str. 2308 A] gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 291 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 27 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 86 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 87 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 146 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + A K Sbjct: 147 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 206 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 207 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 266 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 267 TPKKPRGSGAPEGRARK 283 >gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 247 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 9/250 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM L+ L LVNP P +A S +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLVK-PDSQAISLAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EAIA + T+AR+R+ +L +E I E V ++FGRER G Sbjct: 61 QIVDTLDEAIAGCSLVVGTSARSRSLPWPMLDSRECGIKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPA 187 LTNEE+ + ++ NP + SLN++ AV ++ +E + + EK + ++ Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLDAQEKATPQPQFAESPYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F ++E + G+ R +++ L ++ R R+E+ +LRG++++ + Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIR-EGNPGQVMSKLRRLYTRARPERDELNILRGMLASFE 238 Query: 248 KFSRQSSRRN 257 K R+ S N Sbjct: 239 K--RKGSEGN 246 >gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40] gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40] Length = 267 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 7/263 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ I++V+ NIG ARAM N L +L LV+P+ +P+EKA +A+A V+D Sbjct: 5 DNFNRIRIVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQ-YPAEKAVWRAASATDVLD 63 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V +L EAIAD + T+AR R +L P+E G+ V I+FGRE Sbjct: 64 DAVVVGSLDEAIADCTLVVGTSARERRIPWPLLTPRECGDKAWAEAGKGE-VAIVFGRED 122 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----T 185 GLTNEE+ + + P NP + SLNI+ A+ ++ +E + E + Sbjct: 123 RGLTNEELQKCHYHVHIPSNPDYSSLNIAAAIQVLCYEIRMTHLAEKEGKPIHFDDWDVP 182 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PA + ++ + +LE +L + + + ++ + + +F R + E+ +LRG++++ Sbjct: 183 PAKQQDMEYYYAHLEETLAKLDFLD-LSNPRQTVTRIRRMFNRIRMDEMEISILRGMLTS 241 Query: 246 LDKFSRQSSRRNNVLLQKTEKSE 268 + S + L ++ K + Sbjct: 242 IQNQIYHSGNKIEALNEEIAKLK 264 >gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088] Length = 258 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 142/259 (54%), Gaps = 6/259 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+P NIG VARAM N T L LV PR +P E+A +A+A V+D R Sbjct: 3 ESVRIVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPR-RFPDEEATWRAASAADVLDGAR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + ++EAIAD HF+ T+AR R +L + AA+ + GQ V ++FGRE GL Sbjct: 62 VVATVEEAIADCHFVVGTSARERRIPWPILDSRRAALQIRGEAARGQ-VAMLFGREDRGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTP-ATK 189 TN+E+ L + ++ P + + SLN++ AV ++ +E ++ E+ +E + P ATK Sbjct: 121 TNDELKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQTLYDSLPERADEEWDAPFATK 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + F ++LE +L + + P ++++ L ++ R + E+ +LRG+++ K Sbjct: 181 EAMQRFYEHLEQTLIDIEFLDP-SAPRQLMTRLQRLYNRMRIDEMELNILRGMLTETQKV 239 Query: 250 SRQSSRRNNVLLQKTEKSE 268 + S L QKT+ E Sbjct: 240 VFERSALRAKLNQKTDDDE 258 >gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 242 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R+ +L P+E I + V ++FGRER G Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSRSLPWPMLDPRECGIKSVQEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 LTNEE+ + ++ NP + SLN++ AV ++ +E + S E + E++ Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAFLQSQETVQPEYEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F ++E + G+ R +++ + +F R R+E+ +LRG++S+L K Sbjct: 180 DDLERFYQHMEQMMTHSGFIR-EGSPGQVMSKMRRLFTRARPERDELNILRGMLSSLQK 237 >gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 131/261 (50%), Positives = 178/261 (68%), Gaps = 2/261 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI Sbjct: 9 ENLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ +F L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE Sbjct: 69 NNAVIFDTLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ + + + P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLENVSDTAFRAPEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L+ RGYFRP E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKTMFHGFLSQLEEALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEKS 267 D FS Q R + ++ + Sbjct: 249 DHFSPQYPRGSRAPQERDRQK 269 >gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103] gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103] gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355] Length = 248 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 9/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A S +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L EAIA + T+AR+R+ +L +E + E V ++FGRER G Sbjct: 61 KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSIEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-- 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E + A+ Sbjct: 120 LTNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQAQENQTPKPQYDASPYP 179 Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +L F ++E + E G+ R +++ L ++ R R+E+ +LRG++S+ + Sbjct: 180 LVDDLERFYQHMENMMLESGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238 Query: 248 KFSRQSSRRNN 258 K R+ +R + Sbjct: 239 K--RKGTRTDG 247 >gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia intermedia ATCC 29909] Length = 257 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 9/257 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + + Sbjct: 4 NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+A + T+AR+R +L P+E + + V ++FGRER GLT Sbjct: 63 VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAHEAEHAPVALVFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189 N+E+ + ++ P NP + SLN++ AV ++ +E + + E+ Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQATAPAIEEEEAPYPLV 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE L G+ R +++ L +F R +E+ +LRG++++++K Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240 Query: 250 SR--QSSRRNNVLLQKT 264 + Q N+ L K Sbjct: 241 DKYPQHDAGNSALDNKK 257 >gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1] gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp. BNC1] Length = 262 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 134/249 (53%), Positives = 181/249 (72%), Gaps = 1/249 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD VID+ Sbjct: 12 AEGPAIVLVEPQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRADHVIDAT 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF +L A+ADL+F+YATTAR R+NFK V P EA + L R +GQ GI+FGRERWG Sbjct: 72 KVFDDLAGAVADLNFLYATTARPRDNFKPVRGPVEATLQLRARHAAGQRTGILFGRERWG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+A+++ I++FPVNP F SLN++QAVLLM +E ++ V ++ PA + Sbjct: 132 LTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLKAGG-EGVAPVSPEHVPAPREH 190 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L S +DYL+ L ERGYFR +KK KM D+L ++F RP EE+ +LRG++ +L+KFS Sbjct: 191 LNSLMDYLDRVLSERGYFRNEDKKPKMFDNLRALFTRPGFTVEELAVLRGVLVSLEKFSP 250 Query: 252 QSSRRNNVL 260 + R + Sbjct: 251 KKPRGSGAP 259 >gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM 12614] Length = 270 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 123/257 (47%), Positives = 170/257 (66%), Gaps = 3/257 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +AK P +IL +PQLGENIG ARAM NF L LR+VNPRDGWPSEKAR+S++ AD VID Sbjct: 15 TAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVIDK 74 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF +++ AIADL F++ATTAR+R K V P EAA E G G +FGRERW Sbjct: 75 VQVFDSVEAAIADLQFVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYLFGRERW 134 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPAT 188 GL NEE+ALS+ I++ PV+P F SLNI+QAVL+ +E + + + + ++ PA Sbjct: 135 GLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRKIATAGALPFLLSEDVHPPAK 194 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K ELL F ++LE +L++ +FRP E++ M+ L +IF + EL +EV LRG+V++L+K Sbjct: 195 KDELLRFFEHLEGALDKATFFRPPERRPHMVRTLRNIFQKAELTDQEVRALRGVVASLEK 254 Query: 249 FSRQSSRRNNVLLQKTE 265 R++ E Sbjct: 255 -RETRPRKDRSGSGSEE 270 >gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella frigidimarina NCIMB 400] Length = 240 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 4/237 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P ++ + +A A ++ ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRAE-PDGQSIALAAGASDILKNL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EAIAD + AT+AR+R +L P+EA + L + +G V I+FGRE G Sbjct: 61 TRVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGLKLTQESLNG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ ++ P NP + SLN++QAV ++ +E + +E P T E Sbjct: 120 LSNEELQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTETPAVTDEYPLTS-E 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F +LE +L + G+ +++ L ++ R + E+ +LRGI++++DK Sbjct: 179 LERFFVHLESTLSKTGFVIKNH-PGQVMTKLRRLYTRARIEAPEMNILRGILTSIDK 234 >gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2] Length = 251 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 11/248 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+ NIG ARAM N L+QL LV P + +P A + ++ A ++D+ RV L Sbjct: 2 VLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDTL 60 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +EA+ + T+AR+R +L P+E A E + + V ++FGRE GLTNEE+ Sbjct: 61 EEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEEL 120 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NTPAT 188 + P +P F SLN++ AV ++ +E + + K K + T Sbjct: 121 QRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELVT 180 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL + +LE +L + G+ P EK + ++ L ++ R + + E+ +LRGI++ K Sbjct: 181 ADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQK 239 Query: 249 FSRQSSRR 256 +R S + Sbjct: 240 VARGLSYK 247 >gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus asymbiotica] Length = 259 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 5/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ N+G ARAM LT L LVNP P A + SA A VI S Sbjct: 20 LENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQ-PDSHAIALSAGASDVIGSA 78 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A+A + T+AR+R ++ P+E + V I+FGRER G Sbjct: 79 TIVDSLDKALAGCELVIGTSARSRTLSWPMVEPRECGERSV-QAAEHVPVAIVFGRERVG 137 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV L+ +E + +K ++ Sbjct: 138 LTNEELQKCHFHLNIPTNPEYSSLNLAMAVQLVSYEIRMAYLARQDKVEPAADETEYPLV 197 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ F +LE L + G+ R ++++ L +F R +E+ +LRGI+++++K+ Sbjct: 198 DDMERFYHHLEHVLHDSGFIRKAH-PGQIMNKLRRLFTRARPEMQELNILRGILTSVEKW 256 Query: 250 SRQ 252 +++ Sbjct: 257 AKK 259 >gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 244 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+QL L P+ P ++ + +A A ++ ++ Sbjct: 2 LSNVRIVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVA-PDGQSIALAAGASDLLKNL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +L AIAD + T+AR+R +L +EA + L +G V ++FGRE G Sbjct: 61 VVTDDLASAIADCSLVIGTSARSRTLSWPMLDAREAGVKLASEANTG-PVALVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKG 190 L+NEE+ + + + P NP + SLN++QAV L+ +E + +E+ E T+G Sbjct: 120 LSNEELQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQTEQPSPEAEVEYPTQG 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +LE +L G+ ++++ L +F R + E+ +LRG+++++DK + Sbjct: 180 QMEGLYQHLEQTLSHTGFIIKAH-PGQVMNKLRRLFNRARPEQTELAILRGVLTSVDKTT 238 Query: 251 RQSS 254 + Sbjct: 239 GRKK 242 >gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M] gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330] gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94] gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99] gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M] gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330] gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1 str. 9-941] gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH family, group 1 [Brucella melitensis biovar Abortus 2308] gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC 23365] gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC 23445] gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis ATCC 23457] gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026] gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28] gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis M5-90] Length = 276 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + A K Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 252 TPKKPRGSGAPEGRARK 268 >gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 239 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 8/242 (3%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+ NIG ARAM N L++L LV+P+ +PSE+A S ++ A ++DS Sbjct: 3 ENIRIVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPK-VFPSEEAVSRASGASDLLDSAV 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V L+EAI+D + T+AR R+ +L P+E+A + + G +FGRE GL Sbjct: 62 VVDTLEEAISDCQLVIGTSARERHIPWPLLDPRESAELTYK---EGLETAFVFGREDRGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPATK 189 TNEE+ + + P F SLN++ AV ++ +E + + + + AT Sbjct: 119 TNEELQRCHYHVHIPSVEAFSSLNLATAVQVIAYELRMKLLSLGDSPIVQSKWDVPAATS 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ L++LE L E + P ++++ ++ R ++ ++E+ +LRG+++ ++K Sbjct: 179 EQMDHMLEHLENVLGEIEFLDPK-APRQVMTRFRRLYQRAQMDQQEMGMLRGVLTAIEKQ 237 Query: 250 SR 251 R Sbjct: 238 CR 239 >gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937] Length = 248 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G ARAM LT L LVNP P +A S SA A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A+ + T+AR+R +L P+E + + V ++FGRER G Sbjct: 61 TIVDSLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSVQEA-QHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + ++ E++ Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQRGEPAHEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI+S + K Sbjct: 180 DDLERFYQHLEETLLHTGFIRQPHQ-GQVMNKLRRLFTRARPENQELNILRGILSAITK 237 >gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 241 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EAI+ + T+AR+R+ +L P+E + E V ++FGRER G Sbjct: 61 KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + V + + ++ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQTQPDETPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K Sbjct: 180 EDLERFYQHMEKIMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp. TrichSKD4] Length = 293 Score = 311 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 115/246 (46%), Positives = 166/246 (67%), Gaps = 2/246 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P +IL +PQLGENIG ARAM NF LR+VNPRDGWPSEKAR++++ AD VID V+V Sbjct: 42 PPAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRADHVIDKVQV 101 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+ AIADL F++ATTAR+R K V +P EAA + + SG G IFGRERWGL Sbjct: 102 FDSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYIFGRERWGLN 161 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191 NEE+AL++ I++ PV+P F SLNI+QAVL+ +E + + + +E + PA K + Sbjct: 162 NEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTATAGALPFRLDEELHPPAVKED 221 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 ++ ++LE +L+E +FRP E++ M+ L +IF + EL +EV LRG+++ L++ Sbjct: 222 VVRLFEHLESALDEVTFFRPPERRPHMVRTLRNIFQKAELTEQEVRALRGVIAALERRET 281 Query: 252 QSSRRN 257 + R + Sbjct: 282 RPRRSD 287 >gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1] Length = 276 Score = 311 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYGDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 252 TPKKPRGSGAPEGRARK 268 >gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi ATCC 49188] Length = 281 Score = 311 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 122/257 (47%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ Sbjct: 12 AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + + V + A K Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLETETETVFRGPELELAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG++++LD F Sbjct: 192 NELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 251 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 252 TPKKPRGSGAPEGRARK 268 >gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter turicensis z3032] gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter turicensis z3032] Length = 246 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 8/248 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A + T+AR+R +L P+E + V I+FGRER G Sbjct: 61 SIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAAH-APVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNTP 186 LTN+E+ + ++ NP + SLN++ AV ++ +E + + + E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVRMAWLATQDAQAPAHAEEEETPY 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +L F +LE L G+ R ++++ L +F R +E+ +LRG+++++ Sbjct: 180 PLVDDLERFYGHLEQVLLTTGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGMLASI 238 Query: 247 DKFSRQSS 254 + + Sbjct: 239 ESSRNEKP 246 >gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella tarda ATCC 23685] Length = 245 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + EAIA + T+AR+R+ +L P+E + V I+FGRER G Sbjct: 61 TIVDSFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRAAQE-SEHAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189 LTN+E+ + + P NP + SLN++ AV ++ +E + + Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKYPPVGEEAYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK+ Sbjct: 180 DDLERFYSHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDKY 238 Query: 250 S 250 Sbjct: 239 H 239 >gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica KT99] Length = 254 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 12/255 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVQ-PDGHSIALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ EAIAD + AT+AR+R +L P+EA L G V I+FGRE G Sbjct: 61 VIVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALEG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182 LTNEE+ + ++ P NP + SLN++QAV ++ +E + ++ V+E Sbjct: 120 LTNEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLEHEKRELDKGRSVDYVEE 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + E +F ++LE +L G+ + +++ L +F R L R+E+ +LRG+ Sbjct: 180 KIEYPFAKERENFFEHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238 Query: 243 VSTLDKFSRQSSRRN 257 ++++DK + Sbjct: 239 LTSIDKKMPPKDDKQ 253 >gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 241 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EAI+ + T+AR+R+ +L P+E I E V ++FGRER G Sbjct: 61 KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGIKSVEE-GQHAPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189 LTNEE+ + ++ NP + SLN++ AV ++ +E + S E + + Sbjct: 120 LTNEELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQSVEAPQAQCDDSPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K Sbjct: 180 DDLERFYQHMEKMMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617] Length = 241 Score = 311 bits (797), Expect = 7e-83, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EAI+ + T+AR+R+ +L P++ + E V ++FGRER G Sbjct: 61 KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRQCGLKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + V + + ++ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQPDETPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K Sbjct: 180 DDLERFYQHMEKIMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71] Length = 254 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 6/241 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + I+LV+P NIG VARAM L +L LV P + +P E+A + A V++S Sbjct: 2 NPEHIRIVLVEPSHPGNIGAVARAMKTMGLGRLVLVAP-EQFPHEEATWRAVWARDVLES 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L EAIA+ F+ T AR++ VL P+ +A+ ++ G+ V I+FGRE Sbjct: 61 AVVVDTLDEAIAECGFVVGTCARDQRLPWPVLDPRRSALEVSANSRRGE-VAILFGREDN 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPA 187 GL+NEE+ N ++ P + + SLN++ AV ++ +E + + N + A Sbjct: 120 GLSNEELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYELHMLANGDALPQTSNAEWDEPLA 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ + F +LE +L + G+ P +K++ L ++ R + E+ +LRGI++ Sbjct: 180 SQENIERFYVHLEETLSQIGFLNPA-APRKLMPRLRRLYNRLGMDEMELNILRGILTETQ 238 Query: 248 K 248 K Sbjct: 239 K 239 >gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium SWAT-3] Length = 242 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 5/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENAVIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D + ++AR+R +L P+E A V ++FGRER GLTNEE Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECAEKFAVE-GQKHPVALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + V+S+ + Q+ EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYKPQPQDEYPRHEELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K Sbjct: 185 FYEHLEKVIIDTQFI-SKDKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKN 240 >gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis MR-1] Length = 241 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +ILV NIG ARAM L+ L L PR ++ + +A A ++ + Sbjct: 2 LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 VKVDSLQEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTEGITG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ ++ P NP + SLN++QAV ++ +E + E + P + + Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQMEAPQAVEEYPLS-AD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRMFSRARIESQEMNILRGILTSIDKVVG 237 Query: 252 QSSR 255 + Sbjct: 238 NKQK 241 >gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3] Length = 254 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 12/246 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVA-PDGHSVALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++EAIAD + AT+AR+R +L P+EA L E +G V I+FGRE G Sbjct: 61 VTVDSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVESALTG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182 LTNEE+ + ++ P NP + SLN++QAV ++ +E + +K V+ Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQKEFESNKLEGFVEP 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 N E +F +++E +L + + +++ L +F R + R+E+ +LRGI Sbjct: 180 DNEYPFSKERENFFEHMENTLLSTNFIVK-QHPGQVMTKLRRLFSRARIERQEMNILRGI 238 Query: 243 VSTLDK 248 ++++DK Sbjct: 239 LTSVDK 244 >gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32] Length = 242 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 5/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D + ++AR+R +L P+E V ++FGRER GLTN+E Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKFAVE-GQKHPVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + V+S+ ++Q+ EL Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K Sbjct: 185 FYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKN 240 >gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] Length = 242 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + ++ + S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENATIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D + ++AR+R +L P+E V ++FGRER GLTN+E Sbjct: 66 LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKFAVE-GQKHPVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + V+S+ ++Q+ EL Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + +K ++++ L +F R +E+ LRGI+++++K Sbjct: 185 FYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEK 237 >gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; AltName: Full=tRNA Cm32/Um32 methyltransferase gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 255 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 5/240 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ NIG ARAM L+ L LVNP P +A + SA A +I + V Sbjct: 4 NIRIVLVETSHTGNIGSTARAMKTMGLSNLYLVNPL-HKPDAQAIALSAGASDIIGNASV 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL +A+A + T+AR+R +L P+E + + V ++FGRER GLT Sbjct: 63 VDNLDQALAGCSLVVGTSARSRTLPWPMLEPRECGVKSIQEAAQ-APVALLFGRERVGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191 N+E+ + + P N + SLN++ AV ++ +E + S ++ V+E + + Sbjct: 122 NDELQKCHFHVQIPANHEYSSLNLAMAVQILAYEVRVAWLDSQRQDATVQEASVYPVAED 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L F +LE L G+ R +++ L +F R +E+ +LRG++++++ + Sbjct: 182 LERFYQHLEQVLSGTGFIRRAH-PGLVMNKLRRLFNRARPESQELNILRGMLTSIEHTQK 240 >gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 252 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 12/246 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVQ-PDGHSVALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ EAIAD + AT+AR+R +L P+EA L G V I+FGRE G Sbjct: 61 VIVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALDG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182 L+NEE+ N +S P NP + SLN++QAV ++ +E + ++ V+E Sbjct: 120 LSNEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEARVAHLEHEKREFEKGRPADYVEE 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + E +F +LE +L G+ + +++ L +F R L R+E+ +LRG+ Sbjct: 180 KIEYPFAKERENFFGHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238 Query: 243 VSTLDK 248 ++++DK Sbjct: 239 LTSIDK 244 >gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185] gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195] gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223] gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS185] gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS195] gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS223] gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS183] gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica BA175] gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS678] Length = 242 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P + + +A A ++ + Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVE-PDGHSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EAIAD + AT+AR+R +L P+EA + L G V I+FGRE G Sbjct: 61 VKVDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGVRLATEALKG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ ++ P NP + SLN++QAV ++ +E + E +E + Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQKEVAEEELTEYPLAAD 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE +L G+ +++ L +F R + +E+ +LRGI+++++K + Sbjct: 180 QERFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEKVTG 238 Query: 252 QSSR 255 + Sbjct: 239 SKDK 242 >gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum SL003B-26A1] gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum SL003B-26A1] Length = 289 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 117/264 (44%), Positives = 171/264 (64%), Gaps = 3/264 (1%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L + P +IL +PQLGENIG ARAM NF L LRLVNPRDGWPS+KAR++++ Sbjct: 8 RDEALAVDIRPPAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASR 67 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 AD VID+V+VF +L+ A+ADL F++ATTAR+R K V P EAA + +G G Sbjct: 68 ADHVIDAVQVFDSLEAAVADLSFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGY 127 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--K 181 +FGRERWGL N+E+AL++ I++ PV+P F SLNI+QAVL+ +E + + + + Sbjct: 128 LFGRERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRKTATRGALPFALDE 187 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + N PA K +LL F ++LE +L+ G+ RPVE++ M+ ++ +IF + L +EV LRG Sbjct: 188 DANPPAGKADLLRFFEHLEGALDGAGFLRPVERRPHMVRNIRNIFQKARLTDQEVKTLRG 247 Query: 242 IVSTLDKFSRQSSRRNNVLLQKTE 265 IV+ L++ R++ T+ Sbjct: 248 IVAALER-RPSRPRKDMPPEDATD 270 >gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33] Length = 276 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 124/257 (48%), Positives = 177/257 (68%), Gaps = 2/257 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ + SEKAR++++ AD VID+ Sbjct: 12 AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+ +L AIADL+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+G Sbjct: 72 VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189 L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + + V + A K Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F ++LE +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251 Query: 250 SRQSSRRNNVLLQKTEK 266 + + R + + K Sbjct: 252 TPKKPRGSGAPEGRARK 268 >gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1] gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32] gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. W3-18-1] gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens CN-32] gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens 200] Length = 241 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 4/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P ++ + +A A ++ + Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVE-PDGQSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 VKVDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTESVTG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ ++ P NP + SLN++QAV ++ +E + E + P + Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAGIESAQEPTEYPLAADQ 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE +L G+ +++ L +F R + +E+ +LRGI++++DK Sbjct: 180 -ERFFVHLENTLFSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVS 237 Query: 252 QSSR 255 + Sbjct: 238 NKQK 241 >gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 287 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 24/289 (8%) Query: 1 MTPYAPQLQNSAK-----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MT P L + I+LV+ NIG VARAM N L L LVNP+ +P E Sbjct: 1 MTMNKPALPVESTDTYHDQVRIVLVETTHSGNIGAVARAMKNMGLGNLWLVNPK-SFPDE 59 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + + +++A V+D +V S+L EA++D + T+AR R V++P +AA+ E Sbjct: 60 ASYARASSASDVLDRAQVVSSLDEALSDCVLVMGTSARGRKVPWPVISPPQAAVTAAENS 119 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G V ++FGRE GL+NEE+ + I P NP + SLN++ AV ++ +E + + Sbjct: 120 ARG-PVALVFGRESNGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLRG 178 Query: 176 --------------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 + PAT ++ F +LE L++ + R E ++++ Sbjct: 179 LEEVESSPYLESMVEPGDRGWDVPPATVNDVEGFFGHLEQVLQDVDFHR-RENPRQLMTR 237 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKF--SRQSSRRNNVLLQKTEKSE 268 L +F R +L + E+ +LRGI++++ K +R+ RN ++ + Sbjct: 238 LRRLFQRAKLDQMEINILRGILTSVQKATVAREGVGRNTTAAGAVDEGQ 286 >gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155] gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS155] Length = 242 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 3/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P + + +A A ++ + Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVE-PDGHSIALAAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EAIAD + AT+AR+R +L P+EA + L +G V I+FGRE G Sbjct: 61 VKVDSLAEAIADCCLVIATSARSRTLDWPMLEPREAGVRLATEALNG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ ++ P NP + SLN++QAV ++ +E + E +E + Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQKEVAEEELTEYPLAAD 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE +L G+ +++ L +F R + +E+ +LRGI+++++K + Sbjct: 180 QERFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEKVTG 238 Query: 252 QSSR 255 + Sbjct: 239 SKDK 242 >gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908] gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC 51908] Length = 254 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 12/256 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVE-PDGHSVALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 VTVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVSSALTG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182 LTNEE+ N ++ P NP + SLN++QAV ++ +E + +++ V+ Sbjct: 120 LTNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPADYVEP 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 +N E +F +LE +L G+ + +++ L +F R L ++E+ +LRG+ Sbjct: 180 ENEYPFASERENFFTHLEKTLLNTGFIVK-QHPGQVMTKLRRLFSRARLEKQEMNILRGM 238 Query: 243 VSTLDKFSRQSSRRNN 258 ++++DK + Sbjct: 239 LTSIDKKVATKDKSET 254 >gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297] gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297] Length = 254 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 126/251 (50%), Gaps = 8/251 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + ++LV NIG ARAM L LV P+ +PS+ A + ++ A + Sbjct: 7 LPDDIAQTKVVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPK-TFPSDDAIAMASGATDI 65 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V L+EA+AD F+ +AR+RN ++ P++ A + V ++ GR Sbjct: 66 LEQAVVVETLEEAVADCGFVVGASARSRNLPWPLVHPRQMAEQALA-LPDNTRVALVLGR 124 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKE 182 ER GLTN+E+A + ++ P NP + SLN++ AV ++ +E ++++S+ + V+ Sbjct: 125 ERSGLTNDELARCHCHVNIPANPDYSSLNVAAAVQVLCYELRMSAVLSTGEETPLWGVEW 184 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PAT G + S + E L + + P + ++ + + + + E +LRG+ Sbjct: 185 DQPPATAGAMESLFAHWERVLVDIDFLDP-TNPRTLMSKIRRLMAKAQPDEVEANILRGM 243 Query: 243 VSTLDKFSRQS 253 +S + K R+ Sbjct: 244 LSHVQKHLRKP 254 >gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 244 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G ARAM L++L LVNP P +A S +A A VI Sbjct: 2 LENIRIVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLVK-PDSQAISLAAGASDVISHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L +A+ + T+AR+R +L P+E VL+ V I+FGRER G Sbjct: 61 TIVETLDQALEGCSLVIGTSARSRTLQWPMLEPRECG-VLSAEEARHAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + ++ P NP + SLN++ AV L+ +E + + +E+ E++ Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIRVAWLDNLKAEEPAYEESPYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +L F +LE +L + G+ R + +++ L +F R +E+ +LRGI+S++ Sbjct: 180 DDLERFYQHLEQTLLQTGFIR-HSHQGQVMHKLRRLFTRARPESQELNILRGILSSI 235 >gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM 9187] Length = 243 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 5/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ NIG ARAM L+QL LV+P P EK+ + +A A+ ++ ++ Sbjct: 3 LENIRIILVNTSHTGNIGSAARAMKTMGLSQLVLVDP-VQPPDEKSTALAAGANDILANL 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R+ L EAI+D + +AR+R +L P++A L + + V ++FGRER G Sbjct: 62 RIVPTLAEAISDCSLVIGASARSRTLAWPMLDPRQAGQQLADGAL-NKTVALVFGRERTG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV + +E + + E V +N + Sbjct: 121 LTNEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIRMSWLAQQETVVSPADENEYPPQ 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + F +LE +L + + ++ L +F R E+ +LRGI++++ K Sbjct: 181 ASMELFYTHLEETLRQTQFLHSDH-PGHVMMRLRRMFTRLRPDNNELNILRGILTSVQKS 239 Query: 250 SRQS 253 SR S Sbjct: 240 SRNS 243 >gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 257 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 16 LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNA 74 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + EAIA + T+AR+R+ +L P+E + V I+FGRER G Sbjct: 75 TIVDTFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTNEE+ + ++ P NP + SLN++ AV ++ +E + +++ + V E+ Sbjct: 134 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIRVAHLDRIAAHEPVPEEEPYPLV 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ RP ++ L +F R +E+ +LRGI+++++K Sbjct: 194 DDLERFYAHLEETLHATGFIRPTH-PGNIMSRLRRLFTRARPEAQELNILRGILASIEK 251 >gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM 21326] Length = 241 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ Sbjct: 2 LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSI-DEQALALAAGASDIAENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + S+L EA+AD + ++AR+R +L P+E E V ++FGRER G Sbjct: 61 TIVSSLAEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVEE-GQNAPVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189 LTN+E+ + + P NP + SLN++ AV + +E + ++ +EQ+ Sbjct: 120 LTNDELQTCHFHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLEKEQQQYTPQEQSEYPRH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + E+ K+++ L +F R +E+ +LRGI+++++K Sbjct: 180 KELELFFEHLEKVAVSTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGILTSIEK 237 >gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 241 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA + + T+AR+R+ +L P+E + E V ++FGRER G Sbjct: 61 KIVDTLDEATSGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQ-APVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189 LTN+E+ + ++ NP + SLN++ AV ++ +E + S E + +++ Sbjct: 120 LTNDELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQYHESSYPLV 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F ++E + + G+ R +++ + +F R R+E+ +LRG++S+L+K Sbjct: 180 DDLERFYQHMEKMMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237 >gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121] Length = 241 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 8/240 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ NIG ARAM N L +L LV P+ +PS++A S ++ A ++++ Sbjct: 1 MNKVRIVLVNTSHPGNIGAAARAMKNMGLARLYLVAPK-VFPSDEADSRASGATDILENA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V L+EAIAD + T+AR R+ ++ P++AA +++E +FGRE G Sbjct: 60 VVVDTLEEAIADCQLVVGTSARERHIPWPLVDPRQAAEMVHEEQLE---SAFVFGREDRG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPAT 188 LTNEE+ + + P F SLN+ AV ++ +E + + + K AT Sbjct: 117 LTNEELQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLALQDAPIVASKWDVPAAT 176 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +LE L + + P ++++ +F R +L ++EV +LRG+++++DK Sbjct: 177 ADQLDHMLTHLESVLSKTEFLDPK-APRQVMTRFRRLFQRAQLDQQEVGMLRGMLTSVDK 235 >gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 257 Score = 307 bits (788), Expect = 8e-82, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 128/242 (52%), Gaps = 10/242 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 ILV N+G ARA+ ++L LV PR D E+A + ++ A ++++ + Sbjct: 15 RFILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILENALI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+EA+ D HF A +AR R + P++ A + N ++FG ER+GL+ Sbjct: 75 VETLEEALEDCHFAAALSARLREFSPPIFTPRQFADNI--FTGEHANCALVFGSERYGLS 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKEQNTPAT 188 NE++ +A+I+ P NP + SLN++QA+ ++ +EC ++ + ++++ PA+ Sbjct: 133 NEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDEHIGFHGEPAS 192 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ +LE +L G+ P + KK++ L +F R L EEV +LRGI ++K Sbjct: 193 VDQINRMFIHLETALTTIGFLNP-DNPKKLMPRLRRLFSRSSLETEEVNILRGIARQIEK 251 Query: 249 FS 250 S Sbjct: 252 QS 253 >gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 242 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K IILV+ N+G ARAM LT L LVNP P +A + SA A VI Sbjct: 2 LKNIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPL-ILPDSQAIALSAGASDVIGQA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L++A+ + + T+ R R + P+E + V IIFGRER G Sbjct: 61 TIVETLEQALLGCNLVIGTSVRARTLSWPQVTPRECGEKTIHQAI-NSPVAIIFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + P NP + SLN++ AV L+ +E + +EK + K++ Sbjct: 120 LTNEELQKCQYHLHIPTNPEYGSLNLAMAVQLISYEIRMAYLAINEKKSAVDNKDKVQYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ F +LE L G+ R ++++ L +F R +E+ +LRG++++++ Sbjct: 180 PIEDIERFYIHLEAVLNASGFIRKRH-PGQIMNKLRRLFTRAHPEVQELHILRGVLTSIE 238 Query: 248 KFSR 251 K+ + Sbjct: 239 KWHK 242 >gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12] gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12] Length = 251 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + ++LV NIG ARAM L L LV+P+ +P KAR +A AD ++++ Sbjct: 2 NLNSIRVVLVATSHPGNIGSTARAMKTMGLNSLYLVSPK-SFPDYKAREMAAGADDLLET 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L EA+ I AT+AR R L P +A +++++ S Q + I+FGRE Sbjct: 61 AVVTETLDEALVGCQLILATSARPRGLSLPGLIPSSSAELVSKQAESTQ-IAIVFGREHA 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTNEE+ + I P NP + SLN++QAV ++ +E + + + AT Sbjct: 120 GLTNEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELRMKLLAPKAEVALRSDEYATAD 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F ++L+ E + R ++++ + +F R L + EV +LRG++S + K Sbjct: 180 EIEQFYEHLKEVFIEIKFLREA-NPRRLMQRVRRLFNRVNLEKMEVSILRGMLSQVQKSL 238 Query: 251 RQSSRRN 257 +S+R Sbjct: 239 EWASKRG 245 >gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 247 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 153/247 (61%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A + Sbjct: 1 MPSDTSQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F +L A+AD +++ATTAR R K V +P++A + E++ +G+ V ++FG Sbjct: 61 LDEAQLFDDLGRALADSTYVFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186 ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E + Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGEVVHEATDLGKGDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ +++ E LEE G+F P EK + M +L +++ R + R +V +L G++ + Sbjct: 181 ATGIEVEKLVEHYEDRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGVMRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKEKG 247 >gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396] gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396] Length = 257 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG AR M N L++L LV P D +P + A S ++ A V+ S Sbjct: 2 LENVRIVLVNTSHPGNIGATARVMKNMRLSRLVLVEP-DRFPDDDATSRASGALDVLGSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERW 130 +V ++L+EAI + T+AR R+ V P++ A + +R+ + +V I+FGRE Sbjct: 61 QVVASLEEAIDGCVLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREER 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----------- 179 GLTN+E+ + + P NP + SLN++ A ++ +E ++ +E+N Sbjct: 121 GLTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYELHMRWLLENEENQSYIQRLDGPG 180 Query: 180 -VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 AT E+ +L +LE +L + + P E ++++ L ++ R L + E+ + Sbjct: 181 DAGWDVEAATADEIERYLAHLEQTLVDIEFHDP-ENPRQLMSRLRRLYQRARLDKMEINI 239 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRGI+ + K + ++ Sbjct: 240 LRGILRSTQKMAGTWQKK 257 >gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella halifaxensis HAW-EB4] Length = 251 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 9/252 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVE-PDGHSIALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 ITVGSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALTG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185 LTNEE+ + ++ P NP + SLN++QAV ++ +E + E V+ Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVESGVEPAPVDENDEA 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 + E +F ++LE +L + +++ L +F R + R+E+ +LRGI+++ Sbjct: 180 YPSSRERENFFEHLENTLLSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGILTS 238 Query: 246 LDKFSRQSSRRN 257 +DK ++ ++ Sbjct: 239 IDKVVDKTETKD 250 >gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 247 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 151/247 (61%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + S+ A + Sbjct: 1 MPSDRPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F +L A+ D +++ATTAR R K V +P+ A + +++ +G+ V ++FG Sbjct: 61 LDEAQLFDDLAGALGDRTYVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186 ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL +E M + V E + Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGDVVHEATDLGKGDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ +++ E LEE G+F P EK + M +L +++ R + R +V +L GI+ + Sbjct: 181 ATGIEVEKLVEHYEQRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGIMRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKDKG 247 >gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25] gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25] gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25] Length = 239 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + ++ Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D + ++AR+R +L P+E V ++FGRER GLTNEE Sbjct: 66 LEEAVEDCSLVVGSSARSRTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + S+ E EL Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFAPNEPEEYPRHRELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + E + E+ ++++ L +F R +E+ +LRGI+++++K Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237 >gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202] gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60] Length = 245 Score = 306 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +AIA + T+AR+R+ +L P+E + V I+FGRER G Sbjct: 61 TIVDSFDDAIAGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189 LTN+E+ + + P NP + SLN++ AV ++ +E + E+ Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLA 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK Sbjct: 180 DDLERFYAHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237 >gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3] gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis HAW-EB3] Length = 254 Score = 306 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L PR P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVA-PDGHSVALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 VTVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALTG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---------SEKNVKE 182 L+NEE+ N ++ P NP + SLN++QAV ++ +E + E V+ Sbjct: 120 LSNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPEGYVEP 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 N E +F +LE +L G+ + +++ L +F R L R+E+ +LRG+ Sbjct: 180 VNEYPFAKERENFFSHLEETLLNTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238 Query: 243 VSTLDK 248 ++++DK Sbjct: 239 LTSIDK 244 >gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 306 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 103/253 (40%), Positives = 144/253 (56%), Gaps = 1/253 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MT P P +IL +PQL ENIG VAR M NF L LRLV PRDGWP E+A +S Sbjct: 1 MTDENPSASAQPAPPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWAS 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A+ +D +VF +L+ AIADL +YATTAR R V P+E+A L E + G+ Sbjct: 61 ASGANWPLDDAKVFDSLEAAIADLKLVYATTARPRETRLPVYTPRESAGHLAEEVAQGRK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKN 179 VG++FG ER GL +IAL AI+S P++ F SLN++QAV + +E +K Sbjct: 121 VGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWKKF 180 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 PA + LL ++LE L++ G++ P EKK M+ +L R L +EV Sbjct: 181 ELNVEEPADQATLLGLYEHLEDELDKAGFYHPPEKKPSMVRNLRVPLARARLTDQEVRTF 240 Query: 240 RGIVSTLDKFSRQ 252 RG+++ L K + Sbjct: 241 RGVITALSKGRGR 253 >gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B] gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis SB2B] Length = 240 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 4/238 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG VARAM L+ L L PR P ++ + +A A ++ ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPRCE-PDGQSVALAAGACDILKNL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EAI D + T+AR+R +L P++A L SG V I+FGRE G Sbjct: 61 TRVESLHEAIKDCALVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSG-PVAIVFGRENHG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEE+ N + P NP + SLN++QAV ++ +E + + + P E Sbjct: 120 LYNEELQACNYHVFIPANPEYMSLNLAQAVQIICYETRIAHLALENQAAEVTEYP-LMEE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 F ++LE +L G+ +++ L +F R + E+ +LRGI+++++K Sbjct: 179 NERFFEHLERTLTGTGFIIKNH-PGQVMTKLRRLFTRARIENHEMNILRGILTSIEKA 235 >gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B] Length = 249 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 147/248 (59%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A + Sbjct: 1 MPTDRPQPHFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG Sbjct: 61 LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELLRQGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL N++IA +NAII+ PVNP F SLN++Q VLL +E ++ + ++ Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQEEQVPDETFEIGKSDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ + + + E L E GYF P EK M +++ R L R +V +L G++ + Sbjct: 181 ATGQEIEALVTHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMRLTRADVQMLHGVMRQM 240 Query: 247 DKFSRQSS 254 ++ + S Sbjct: 241 VRWKQHGS 248 >gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup] Length = 276 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 132/261 (50%), Positives = 176/261 (67%), Gaps = 2/261 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N GPVIILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKA ++++ AD VI Sbjct: 9 ENLTNGPVIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVI 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +F+ L+++IADLH+++ATTAR R FK+V + EAA VL +R G GI+FGRE Sbjct: 69 NDTVIFNTLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRE 128 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186 RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+ + + P Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLEDVSDTAFRAAEMEP 188 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K FL LE +L RGYFRP+E+K+ ML +L S+F R EV LLRGI+S+L Sbjct: 189 ANKTIFHGFLSQLEEALNIRGYFRPLERKEVMLANLRSVFTRANFSEPEVRLLRGIISSL 248 Query: 247 DKFSRQSSRRNNVLLQKTEKS 267 D FS Q R + ++ K Sbjct: 249 DHFSPQYPRGSRAPEERDRKK 269 >gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp. R2A62] Length = 302 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 88/254 (34%), Positives = 149/254 (58%), Gaps = 1/254 (0%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A Q + P +L+ PQ+GENIG ARAMWNF L ++R+ PRDGWP+ A + ++ Sbjct: 49 PKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAVAMAS 108 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++D V+ + +A+AD +++ATTAR R K V++P+ A + +++ +G+ V Sbjct: 109 GAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAGEKVA 168 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER G+ N++IA +NAIIS PVNP F SLN++Q VLL+ +E V+ Sbjct: 169 VMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQVAQIEHSRVEM 228 Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + A + E+ ++ E L++ G+F P +K M +L +++ R L + +V L G Sbjct: 229 IKTDWAEQIEIEKLTEHYEDRLDQAGFFYPEQKADGMKQNLRNLWSRMPLTKADVQTLHG 288 Query: 242 IVSTLDKFSRQSSR 255 ++ + ++ + Sbjct: 289 VLRQMVRWKERGDE 302 >gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 141/251 (56%), Gaps = 1/251 (0%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P + P +IL PQ+ ENIG VAR M NF L LR+V+PRDGWP E+A + S+ Sbjct: 7 APPLERPDLTLPCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSG 66 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A +D+ ++ + EAIADL+ +YATTAR R V P++ A G G+ Sbjct: 67 AHWPLDNATIYETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGL 126 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKE 182 +FG ER GL +IAL ++I++ PV+P F SLN+SQAV ++++E + E K Sbjct: 127 LFGAERAGLETSDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWRLKVMDTPKEAFTKN 186 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PA +L +LE LE+ G+F P EKK+ M +L R +L +EV RG+ Sbjct: 187 MDQPAALEKLHGLYGHLEDELEKAGFFFPPEKKESMQRNLRVALNRAQLTEQEVRTWRGV 246 Query: 243 VSTLDKFSRQS 253 V+ L K +S Sbjct: 247 VTALVKGRGRS 257 >gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. MED193] Length = 260 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 96/260 (36%), Positives = 150/260 (57%), Gaps = 1/260 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A + Sbjct: 1 MPSPTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + +L EA+ D F++ATTAR R K V +P+ A + ++I +G+ V ++FG Sbjct: 61 LDEAILAQDLPEALEDCSFVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + ++ + + Sbjct: 121 ERAGLENEDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQTQDVVDEAIDLGKTDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT ++ + + + E L+E G+F P K M ++F R L R +V +L G++ + Sbjct: 181 ATGRDVEALVRHYEDRLDEAGFFFPATKAAGMKVVFRNMFSRLPLTRADVQMLHGVMRQM 240 Query: 247 DKFSRQSSRRNNVLLQKTEK 266 ++ + TEK Sbjct: 241 VRWRHKDDPAQGEADPSTEK 260 >gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 4/243 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+ NIG VARAM L+ L LVNP P K S +A A +I+ + Sbjct: 7 NIRIVLVETSHPGNIGSVARAMKTMGLSDLYLVNP-SKKPDAKTISLAAGAADLIERSTL 65 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L A+A+ + + +AR+R + PK+ A+ + SG V ++FG ER GL+ Sbjct: 66 VDTLDTALAECNLVIGASARSRTLSWPEIDPKQCALYSLHQAESG-PVALVFGCERTGLS 124 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKGEL 192 N E+ + + P NP + SLN++ AV ++ +E + +SE + + EL Sbjct: 125 NLELQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIRLAYLKSASESQISKIPNYPLVNEL 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L G+ P + ++M+ L +F R L +E+ +LRGI++ + K Sbjct: 185 ECFYQHLEEVLLHVGFIHPA-RPRQMMHQLRRLFTRARLENKELNILRGILTCIKKSPIN 243 Query: 253 SSR 255 S + Sbjct: 244 SKK 246 >gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B] Length = 239 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L QL LV+P+ E+ + +A A + + ++ Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLNQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D + ++AR+R +L P+E V ++FGRER GLTNEE Sbjct: 66 LEEAVEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + S+ + E EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + E + E+ ++++ L +F R +E+ +LRG++++++K Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGVLTSIEK 237 >gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 246 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 4/238 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM LT L LV+P + +A A V+++ Sbjct: 2 LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEV-DGHTIALAAGAADVVENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+AD F+ ++AR+R L P+E I + V I+FGRER G Sbjct: 61 KIVKTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESNQ-HPVAILFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + S + K E Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVRMAYLDSQKYTGKTEVEEYPRAQ 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + + ++ L +F R ++E+ +LRGI+S+++K Sbjct: 180 ELEMFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236 >gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis BS107] Length = 280 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 146/248 (58%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A + Sbjct: 33 MPSDTPQPAFVLVRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 92 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D R+ +L AI D F++ATTAR R K V +P+ A + E+I +G+ V ++FG Sbjct: 93 LDEARLAEDLAGAIEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGP 152 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + ++ Sbjct: 153 ERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDW 212 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ ++ + +++ E L++ G+F P +K M ++F R L R +V +L GI+ + Sbjct: 213 ASHADVDALVNHYEDRLDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQM 272 Query: 247 DKFSRQSS 254 ++ + Sbjct: 273 VRWKEKRD 280 >gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150] gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150] Length = 251 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + IILV NIG ARAM L L LV P+ +P +A+ +A AD +++S Sbjct: 2 NLNSIRIILVATSHPGNIGSTARAMKTMGLKSLYLVKPK-SFPDLRAQEMAAGADDLLES 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L A+ I T+AR R L P A ++N++ + I+FGRE Sbjct: 61 AVVTESLDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQA-DNTEIAIVFGREHA 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTNEE+ + I+ P NP + SLN++QAV ++ +E + + Q+ AT Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIITYELRMKLLAPKAEVALRQDDYATAE 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F ++L+ + + ++++ + +F R L + EV LLRG++S + K Sbjct: 180 EIEQFYEHLKEVFIKIQFL-KASNPRRLMQRVRRLFNRVSLEKMEVNLLRGMLSQVQKSI 238 Query: 251 RQSSRRN 257 +S+R Sbjct: 239 EWASKRG 245 >gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 246 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 4/238 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM LT L LV+P S + +A A V+++ Sbjct: 2 LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDS-HTIALAAGAADVVENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+AD F+ ++AR+R L P+E I + V I+FGRER G Sbjct: 61 KIVKTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESNL-HPVAILFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + S + K E Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLDSQKYTGKTEVEEYPRAQ 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F ++LE + + ++ L +F R ++E+ +LRGI+S+++K Sbjct: 180 ELEMFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236 >gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum lavamentivorans DS-1] Length = 262 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 1/241 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +ILV PQLGENIG ARAM NF LT LRLV PRDGWP+E+AR++++ AD VID R+ Sbjct: 17 GPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARL 76 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ EAIADL ++ ATTAR+R+ K +L P+ AA + +G G++FG ER GL Sbjct: 77 FATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGLLFGPERTGLE 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192 N++I L++A++ PVNP F SLN++Q VLLM +E + + ++ Q PATK EL Sbjct: 137 NDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHKAGDATEAARIEYPQTRPATKEEL 196 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + F +LE L+ G+ +P EK+ M+ +L ++F R L +EV LRG+V+ L + + Sbjct: 197 VGFFHHLEGELDRFGFLKPPEKRPSMIRNLRNMFQRAVLTEQEVRTLRGVVAALTRRYPK 256 Query: 253 S 253 Sbjct: 257 G 257 >gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040] gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040] Length = 249 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A + Sbjct: 1 MPSDRPQPDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ +L EA+AD +++ATTAR R K V +P+ A E + G+ V ++FG Sbjct: 61 LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL N++IA +NAII+ PVNP F SLN++Q VLL +E + + + ++ Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT E+ + +++ E L E GYF P EK M +++ R +L R +V +L G++ + Sbjct: 181 ATNQEVEALVNHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMQLTRADVQMLHGVMRQM 240 Query: 247 DKFSRQ 252 ++ ++ Sbjct: 241 VRWKQR 246 >gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. SK209-2-6] Length = 248 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 147/248 (59%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A + Sbjct: 1 MPSDTPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + +L A+ D F++ATTAR R K V P+ A + E+I SG+ V ++FG Sbjct: 61 LDEALLAPDLPGALEDCTFVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL +E + E ++ Sbjct: 121 ERAGLENEDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQAEDVPEVVTDLGKSDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT ++ + +++ E L+E G+F P +K M ++F R L R +V +L G++ + Sbjct: 181 ATGKDVEALVNHYEDRLDEAGFFFPPDKAPSMKVVFRNMFSRMPLTRADVQMLHGVMRQM 240 Query: 247 DKFSRQSS 254 ++ + S Sbjct: 241 VRWKEKDS 248 >gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9] gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 243 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++L+ NIG ARAM LT L LV+P K+ + +A A V+ + Sbjct: 2 LDKISVVLIGTSHPGNIGSAARAMKVMGLTNLVLVDPACEI-DAKSLALAAGAADVVTNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EAIAD + ++AR+R L P+E+ I E + V I+FGRER G Sbjct: 61 KIVKTLDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + + + ++ N Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAFLETQKYTGEKIINEYPRAK 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL F ++LE + + ++ L +F R ++E+ +LRGI+++++K Sbjct: 180 ELELFYEHLEKVTTQTQFINKKH-PGMVMTKLRRMFTRARPEQQELNILRGILTSVEKSL 238 Query: 251 RQSSR 255 + Sbjct: 239 EHRDK 243 >gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345] gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana ATCC 700345] Length = 254 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 12/255 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P + + +A A ++ Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVE-PDGHSIALAAGASDILKHA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 S+++EAIAD + AT+AR+R +L P+EA L +G V I+FGRE G Sbjct: 61 ITVSSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALNG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------KNVKE 182 LTNEE+ + ++ P NP + SLN++QAV ++ +E + + ++ + Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQNSAEAVIETESEEA 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 Q + E +F ++LE +L + +++ L +F R + R+E+ +LRGI Sbjct: 180 QEDFPSSKERENFFEHLENTLFSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGI 238 Query: 243 VSTLDKFSRQSSRRN 257 ++++DK +S ++ Sbjct: 239 LTSIDKVVAKSETKD 253 >gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata E-37] Length = 249 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 151/248 (60%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P I+LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ KA + ++ A + Sbjct: 1 MTRGTEQPAIVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + L +A++D HF+ ATTAR+R+ K+V P+EA RI +GQ V ++FG Sbjct: 61 LDEAQHTDTLADALSDCHFVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186 ER GL NE++A +NAI++ PVNP F SLN++Q VLLM +E + ++ + Sbjct: 121 ERAGLENEDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQRATADIAPKAEALAGTEF 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A E+ + E L+E G+F P K + M +L +++ R L R +V +L G++ + Sbjct: 181 AEAHEVEHLARHYEQQLDEAGFFFPETKAEGMKVNLRNMWSRMPLTRADVQMLHGMMRQM 240 Query: 247 DKFSRQSS 254 +++ + + Sbjct: 241 VRWANKKA 248 >gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex HEL-45] Length = 272 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 3/253 (1%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP +P L A P I+LV PQ+GENIG ARAMWNF L +R+V PRDGWPS+ A + + Sbjct: 22 TPSSPVLP--APIPAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSAVAMA 79 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A ++D + ++L A+ D F +ATTAR R+ K V +P+ A + E+I +GQ V Sbjct: 80 SGAGRLLDEAQHSADLPSALGDCDFTFATTARGRDLTKPVYSPEAAMKLAAEKIAAGQRV 139 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++FG ER GL NE+IA +NAI+S PVNP F SLN++Q VLLM +E M + + + Sbjct: 140 AVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMRAQGEVTHEVTE 199 Query: 182 EQNT-PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 T A E+ + E LEE G+F P K M +L +++ R L R +V +L Sbjct: 200 MAGTDWAKGAEVDHLARHYEDRLEEAGFFYPEHKTASMKLNLRNMWSRMPLTRADVQMLH 259 Query: 241 GIVSTLDKFSRQS 253 GI+ + ++ + Sbjct: 260 GILRQMVRWKEKG 272 >gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01] gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116] gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01] gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ ++ + +A A + + V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DDQTLALAAGAGDIAQNATVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D + ++AR+R +L P+E V ++FGRER GLTN+E Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + S+ E EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPSEPEEYPRHKELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + E+ ++++ L ++ R +E+ +LRG+++ ++K Sbjct: 185 FFEHLEKVMIDTQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237 >gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 240 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 I+LV+ NIG ARAM N L L LV P++ +PS++A S ++ A ++D+ Sbjct: 3 NKVRIVLVNTSHPGNIGGAARAMKNMGLADLYLVAPKE-YPSDEAVSRASGATDILDNAV 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L+EA+AD + T+AR RN ++ P++AA ++ + G +FGRE GL Sbjct: 62 IVNTLEEALADCQLVIGTSARERNIPWPLVDPRQAADLVFD---EGLVTAFVFGREDRGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATK 189 TNEE+ N + P F SLN+ AV ++ +E +++ + V K A Sbjct: 119 TNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELRMKTLLMKDAPVVASKWDVPAANI 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ L++LE L + + P E +++ +F R L ++EV +LRG++++++K Sbjct: 179 EQIDYLLEHLEKVLVQTEFLDP-EMPMQVMTRFRRMFQRSRLDQQEVGMLRGMLTSMEKK 237 Query: 250 SR 251 + Sbjct: 238 MK 239 >gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3] Length = 239 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV+P+ E+ + +A A + + + S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAQNAAIVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D + ++AR+R +L P+E V ++FGRER GLTN+E Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + S+ E EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYTPSEPEEYPRHKELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + E + E+ ++++ L ++ R +E+ +LRG+++ ++K Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237 >gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 274 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 8/263 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L I+L+ NIG ARAM N L L LV PR ++ + ++ Sbjct: 8 PQPRALFIMLDKLRIVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESHARAS 67 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNV 121 AD ++ + RV + L+EA++D F+ +AR R+ +L P+ L E Sbjct: 68 GADALVSNARVHATLEEAVSDCTFVVGASARVRHLPWPMLTPRALGERLPRECAPENARA 127 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-- 179 ++FGRE G+TN E+ +A + P NP F SLN++ AV ++ +EC + S ++ Sbjct: 128 ALVFGREDSGMTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLAFLGSDAEDTE 187 Query: 180 ----VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 V+ N PAT +L F ++LE +L + + P + ++++ L +F+R + E Sbjct: 188 TPFGVEWDNPPATHDDLERFFEHLERTLIDIDFHDP-DNPRQLMARLRRLFLRTHIDSME 246 Query: 236 VFLLRGIVSTLDKFSRQSSRRNN 258 + +LRGI+ ++K SR + R + Sbjct: 247 MNILRGILGAVNKQSRALAARKD 269 >gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB18] Length = 410 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 109/258 (42%), Positives = 171/258 (66%), Gaps = 2/258 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + GPV+ILV+PQLGENIGM ARAM NF LT+LR+V PRDGWP+ AR +++ AD Sbjct: 10 KAKADLTGPVVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADY 69 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++D+V +F +++A+A ++ATTAR + K V AP+EAA + + G VGI+FG Sbjct: 70 ILDAVELFETVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFG 129 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185 RER+GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E + + ++ + E++ Sbjct: 130 RERYGLENDEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLATANALPFAMPERSE 189 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A++ ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V Sbjct: 190 RASQHQMQAFFDNLVGELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMA 249 Query: 246 LDKFSRQSSRRNNVLLQK 263 + + R+ + VL + Sbjct: 250 IAE-GRKGPAKGGVLDGE 266 >gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1] gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides ATCC 17029] gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 243 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 1/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + A+ E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243 >gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b] Length = 248 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 100/244 (40%), Positives = 149/244 (61%), Gaps = 1/244 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A + Sbjct: 1 MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ +++ EA+AD HF+ ATTAR R K V +P+ A V ERI +G+ V ++FG Sbjct: 61 LDEAQLTADVAEAVADCHFVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL NE+IA +NAII+ PVNP FPSLN++Q VLL +E + + V + Sbjct: 121 ERAGLENEDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRRAQGAITPERVDMARADW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E+ D+ E L E G+F P K + M +L +++ R L R +V +L G++ + Sbjct: 181 AEQIEIEKLADHYEARLSEAGFFFPEHKAEGMRLNLRNMWSRMPLTRADVQILHGVLRQM 240 Query: 247 DKFS 250 ++ Sbjct: 241 VRWK 244 >gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio parahaemolyticus 16] Length = 241 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + ++ ++ S+ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQALALAAGASDIAENAKIVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++D + ++AR+R +L P+E + E S V ++FGRER GLTN+E Sbjct: 66 LTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEEGQS-APVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + + E EL Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAFLEKEQSQYATTELVEYPRHKELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE ++ + ++ K+++ L +F R +E+ +LRG+++ ++K Sbjct: 185 FFEHLEKVAQKTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237 >gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11] Length = 241 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 4/241 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM LT + LV P +A + +A A + ++ Sbjct: 2 LDKIRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV L EAI+D + ++AR+R +L P+EA I E + + +FGRER G Sbjct: 61 RVVDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + S K ++ Sbjct: 120 LTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEADYPLNH 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL F ++LE + + ++++ + +F R +E+ +LRG+++ +++ Sbjct: 180 ELELFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSM 238 Query: 251 R 251 + Sbjct: 239 K 239 >gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146] gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 245 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ N+G ARAM LT L LVNP P +A + SA A VI + Sbjct: 2 LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +AI + T+AR+R+ +L P+E + V I+FGRER G Sbjct: 61 TIVGSFDDAIVGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189 LTN+E+ + + P NP + SLN++ AV ++ +E + E+ Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLA 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L F +LE +L G+ R + ++++ L +F R +E+ +LRGI++++DK Sbjct: 180 DDLERFYAHLEQTLHHTGFIR-EKSPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237 >gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114] gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114] Length = 241 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 4/241 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM LT + LV P +A + +A A + ++ Sbjct: 2 LDKIRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV L EAI+D + ++AR+R +L P+EA I E + + +FGRER G Sbjct: 61 RVVDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + S K ++ Sbjct: 120 LTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEVDYPLNH 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL F ++LE + + ++++ + +F R +E+ +LRG+++ +++ Sbjct: 180 ELELFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSM 238 Query: 251 R 251 + Sbjct: 239 K 239 >gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 246 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 4/247 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM LT L LV+P S + +A A V+++ Sbjct: 2 LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDS-HTIALAAGAADVVENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA++D + ++AR+R L P+E I + NV I+FGRER G Sbjct: 61 KIVETLDEAVSDCGLVVGSSARSRTLEWPQLDPRENGIKVVAE-SEHHNVAILFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190 LTNEE+ + + P NP + SLN++ AV + +E + S + K Q Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLESQKHTGKTQVEEYPRAE 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL F +LE + + ++ L +F R ++E+ +LRGI+S+++K Sbjct: 180 ELERFYVHLEHVTRQTRFINKNH-PGMVMAKLRRLFTRARPEQQELNILRGILSSVEKTI 238 Query: 251 RQSSRRN 257 + N Sbjct: 239 ETLEKNN 245 >gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43] Length = 276 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 118/245 (48%), Positives = 168/245 (68%), Gaps = 2/245 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP IIL++PQLGENIGMVARAM NF L+ LR+VNPRDGWP+EKA S+++ AD VI+S +V Sbjct: 14 GPAIILMEPQLGENIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKV 73 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L+ A ADL+F++ATTAR R+ K V P EA VL R +G+ GI+FGRER GL Sbjct: 74 FETLEAATADLNFVFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLR 133 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191 N E+ L++ I++FPVNP + SLNI+QAVLL+ +E +++ + + + PA K + Sbjct: 134 NWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLKSGLADPHETAFSAPEVEPAPKTD 193 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +E L+ RGYFR +K+ K +D+L ++ RP +E+ +LRG+ ++ D+F R Sbjct: 194 LHGLFGQIEEGLDARGYFRSDDKRMKAIDNLRAVLTRPGFSTDEINVLRGVFASFDRFDR 253 Query: 252 QSSRR 256 +RR Sbjct: 254 SGNRR 258 >gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36] gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36] Length = 238 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 4/236 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM TQL LV P EK+ + +A A V+++ + Sbjct: 7 VVLVGTSHPGNIGSAARAMKTMGFTQLVLVAPLCEI-DEKSVALAAGAADVLENATIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD + T+AR+R +L +EA + L E + V ++FGRER GLTNEE Sbjct: 66 LEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEV-PNYPVALVFGRERIGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + NP + SLN++ AV ++ +E + ++ +E P + EL F Sbjct: 125 LQKCTYHVCVAANPEYSSLNLAMAVQILTYETRMAYLATNTYPEQENPYP-KQEELEMFH 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +LE +L + G+ +++ L +F R E+ +LRG + ++ + ++ Sbjct: 184 THLEQTLWDSGFINKAH-PGVVMNRLRRLFTRARPETIELNILRGALVSIQRNFKK 238 >gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella bacilliformis KC583] Length = 275 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M +N GPVI+LV+PQL ENIGMVARAM NF L+ LRL+NPR+ +P++KA+++ Sbjct: 1 MAGTNRNCKNVMDGPVIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VID+ VF+ L +AIADLH+I+ TTAR R FK + + EAA +L + G Sbjct: 61 ASKADHVIDNALVFNTLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGL N+EI+L N I++FPVNP F SLNI+QAVLLM +E M++ + + Sbjct: 121 TGILFGRERWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENVSDTA 180 Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 E+ A + L L LE +L+ RGYFRP E+K+ M+ ++ S+F R EV L Sbjct: 181 FRAEEMKLADRETLHGLLFQLEDALDVRGYFRPQERKEIMVSNMRSVFTRANFSESEVRL 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 LRGIVS+L+ FS + R + ++ K Sbjct: 241 LRGIVSSLNHFSPKFPRGSGAPAERDRKK 269 >gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 239 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 5/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+QL LV P+ ++ + +A A + + V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQLVLVEPQCEV-DDQTLALAAGAGDIAQNATVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + ++AR+R +L P+E V ++FGRER GLTN+E Sbjct: 66 LEEAIADCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + S+ EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPNAVEEYPRHKELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F ++LE L + + E+ ++++ L ++ R +E+ +LRG++S ++K Sbjct: 185 FFEHLEKVLVDTQFINK-EQPGQVMNKLRRLYSRARPETQELNILRGVLSAIEKKR 239 >gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000] gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000] Length = 263 Score = 301 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 105/256 (41%), Positives = 148/256 (57%), Gaps = 7/256 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +V Sbjct: 10 PPCVILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKV 69 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L+ AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL Sbjct: 70 FDTLEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLE 129 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGEL 192 ++IAL AI+S P++ F SLN++QAV + +E K + PA + L Sbjct: 130 TDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAAL 189 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L +LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K Sbjct: 190 LGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG--- 246 Query: 253 SSRRNNVLLQKTEKSE 268 R VL + EK++ Sbjct: 247 ---RGRVLAKLAEKAK 259 >gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis HTCC2601] gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. HTCC2601] Length = 247 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 142/247 (57%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A + Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + ++ A+ D ++ATTAR R K V +P+EA ERI G V ++FG Sbjct: 61 LDDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTP 186 ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + ++ Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAEIEARRDEMAGAAW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ E+ ++ E LEE G+F P K M L +++ R L E+V L GI+ + Sbjct: 181 ASGIEVEKLAEHYEQRLEEAGFFFPDHKAPAMKLTLRNLWSRMPLTSEDVRTLHGILRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKERG 247 >gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC 17025] Length = 243 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 142/239 (59%), Gaps = 1/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PSVAEAIRDCDYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++AL++AI++ PVNP F SLN++Q VLL+ +E + + + A+ E+ Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLALTRADVQTLHGMLRQIAWKLKQ 243 >gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sphaeroides KD131] Length = 243 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 1/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ+GENIG ARAM NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V+ P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++AL+NAI++ PVNP F SLN++Q LL+ +E + + + A+ E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+ E LE G+F P EK M +L +++ R L R +V L G++ + +Q Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243 >gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 311 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + GP I+LV+PQLGENIGMVARAM NF L+ LRLV+PRDGWP+E+A ++++ AD VI Sbjct: 33 KTPEAGPAIVLVEPQLGENIGMVARAMANFGLSDLRLVSPRDGWPNERAVAAASRADHVI 92 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ R++ +++ A+ADL F+YATTAR R++FK V P+ AA L RI +GQ+ GI+FGRE Sbjct: 93 EAARLYDSVEAAVADLTFVYATTARARDSFKPVREPETAAANLRARIGAGQSAGILFGRE 152 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTP 186 R+GL+NEE+ L++ I++FPV+P F SLNI+QAVLL+ + + V+ + + P Sbjct: 153 RFGLSNEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWRMAGSADVTKPRFSAPEVPP 212 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A K +L L++LE SL+ GYF P K++ + L ++ + EV +RG++ + Sbjct: 213 ARKEDLHRLLEHLETSLDRNGYFYPEHKREALAQKLRTMLTKAGFSEPEVRTMRGVIRSF 272 Query: 247 D 247 D Sbjct: 273 D 273 >gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92] Length = 248 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 10/247 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A I+LV+ NIG VARAM N + +L LV P+ +P A + ++ A ++++ Sbjct: 2 ASNVRIVLVNTTHPGNIGGVARAMKNMDFAELHLVEPK-KFPHVNADARASGATDLLENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V L+EAIAD + T+AR R+ V+ P+E A ++ + + + I+FGRE G Sbjct: 61 LVHETLEEAIADCQLVVGTSARGRHIPWPVVDPRELAAIVGP-VMDEKKIAIVFGREDRG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184 LTNEE+ L + + P NP F SLN++ AV ++ +E S+ ++E Sbjct: 120 LTNEELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELRMASLYAAENAEHRPQWGTDWDI 179 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A G+L +LE +L + + P E ++++ L +++R + EV +LRGI++ Sbjct: 180 DLADSGDLERLFAHLEETLVDIEFLDP-ENPRQLMPRLRRLYLRAIPDKVEVNVLRGILT 238 Query: 245 TLDKFSR 251 K + Sbjct: 239 ATQKQLK 245 >gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp. R2A130] Length = 261 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 120/248 (48%), Positives = 172/248 (69%), Gaps = 1/248 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A+GPV+ILV+PQ+GENIG ARAM NF L +LRLV+PRDGWP+ A++++A AD +ID+V Sbjct: 12 AEGPVVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNV 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF L++A+ADL F+YATTAR R K V P EAA L R +G+ GI+FGRER G Sbjct: 72 QVFDLLEDALADLQFVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L + E+AL++ I++FPVNP F SLNI+QAVLLM +E M + + + + + PA K + Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMASGEIELPIH-QPPSEPAEKDD 190 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +LE +LE+ YFRP KK M+++L +IF + L ++E+ LRG+V+TL+ Sbjct: 191 LFGLFGHLEGALEDMHYFRPSHKKATMVENLRNIFQKAGLSKQEIHALRGVVATLEGRKT 250 Query: 252 QSSRRNNV 259 + R++ Sbjct: 251 RPRRQHGD 258 >gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM 506] Length = 282 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 106/256 (41%), Positives = 160/256 (62%), Gaps = 1/256 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV++LV+PQLGENIG RAM NF L++LRLVNPR+GWP+ KA + ++ AD ++++ V Sbjct: 16 GPVVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEV 75 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+ A+ADL+F+ A TAR R K+VL A RI G+NVG++FGRER GL Sbjct: 76 FPDLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLY 135 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGEL 192 EE++L++ I++ PVNP F SLN+ AV ++ +E + + + + P A K +L Sbjct: 136 TEEVSLADVILTLPVNPAFASLNLGMAVAVVAYEWFKLASGGALPFQQPDRYPIADKADL 195 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L+F D++E L+E +FR EKK + ++ +IF R L R+++ L G+V+ L + R Sbjct: 196 LAFFDHVEKELDEALFFRSPEKKPVTIRNIRNIFHRVGLTRQDIATLHGMVAALVEGRRT 255 Query: 253 SSRRNNVLLQKTEKSE 268 R L K + Sbjct: 256 REERTAARLSGKPKEK 271 >gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45] Length = 247 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K P +LV PQ+GENIG ARAMWNF L ++RLV+PRDGWP+ + + ++ A + Sbjct: 1 MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + ++ A+ D I+ATTAR R K V +P+EA RI +G V ++FG Sbjct: 61 LDDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186 ER GL N ++A +NAIIS PVNP FPSLN++Q VLL +E S + + ++ Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAGIEARRDEMAGAEW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ E+ ++ E L+E G+F P K M L +++ R L RE+V L GI+ + Sbjct: 181 ASAIEVEKLSEHYEERLDEAGFFFPDHKAPAMKLTLRNLWSRMPLTREDVRTLHGIMRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKERG 247 >gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 266 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 102/246 (41%), Positives = 144/246 (58%), Gaps = 1/246 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ P +IL +PQ+ ENIG VAR M NF L LRLV PRDGWP E+A S++ A Sbjct: 1 MSSNFPPPCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWP 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D+ +VF L+EAIADL ++ATTAR R V+ P+EAA L++ + G VG++FG Sbjct: 61 LDNAKVFDTLEEAIADLKLVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGG 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186 ER GL ++IAL AIIS P++ F SLN++QAV + +E K + P Sbjct: 121 ERAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYEWKMTVDDRPWVKFEQNVEPP 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + LL LE LEE G++ P EKK M+ +L + R L +EV RG+V+ L Sbjct: 181 ADQSSLLGLYAQLEEQLEEAGFYHPPEKKPSMVRNLRAPLARARLTEQEVRTFRGVVTAL 240 Query: 247 DKFSRQ 252 + + Sbjct: 241 SRGRGR 246 >gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11] Length = 248 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 1/248 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++KA + ++ A + Sbjct: 1 MPSDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++ + L +++ D F++ATTAR R K V +P+ A + E+ +GQ V ++FG Sbjct: 61 LDEAQLSATLADSLEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL NE++A +NAII+ PVNP F SLN+ Q VLL +E + ++ Sbjct: 121 ERAGLENEDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQVEEVVDVTTDLGKSDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A ++ + +++ E LEE G+F P EK M ++F R L R +V +L G++ + Sbjct: 181 ANHADVDALVNHYEGRLEEAGFFFPPEKAPGMKVVFRNLFSRLPLTRADVQMLHGVMRQM 240 Query: 247 DKFSRQSS 254 ++ + Sbjct: 241 VRWKEKRD 248 >gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 267 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 1/249 (0%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 AP L + P +IL PQL +NIG VAR M NF L +LRLV PRDGWP ++A ++S+ A Sbjct: 7 APPLDPNLTLPCVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDRAWATSSGA 66 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +D +VF+ + EA+ADL +YATTARNR V+ P++ A+ Q G++ Sbjct: 67 NWPLDGAKVFATVAEAVADLKTVYATTARNREVHLPVVTPRQTAVEAYAAAQGHQKTGLL 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ- 183 FG ER GL +IAL +AI++ PV+P F SLN++QAV ++++E + + + + Sbjct: 127 FGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWRLLVMDAPKAAFTQNM 186 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + PA L +LE LE G+F P EKK+ ML +L + R + +E+ RG+V Sbjct: 187 DEPADLKFLHGLYGHLEDELEAAGFFFPPEKKESMLRNLRVVLNRARMTEQEIRTWRGVV 246 Query: 244 STLDKFSRQ 252 + L K + Sbjct: 247 TALTKGRGR 255 >gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis Och 149] Length = 251 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 152/249 (61%), Gaps = 1/249 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + +N+ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP++ A + ++ A Sbjct: 3 ETRNNPATPAFVLVRPQMGENIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGR 62 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++D+ + +L +I D F++ATTAR R+ K V +P+EA ERI +G+ V ++FG Sbjct: 63 LLDNASLSPDLPASIEDCSFVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFG 122 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNT 185 ER GL NE+IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + + V+ Sbjct: 123 PERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMRATGDVTPQAVEMSGTE 182 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A E+ + E LEE G+F P K + M +L + + R + R +V +L G++ Sbjct: 183 WAENIEVEHLATHYEDRLEEMGFFFPAHKSQSMRMNLRNFWSRMPMTRADVQMLHGMMRQ 242 Query: 246 LDKFSRQSS 254 + ++ + Sbjct: 243 MVRWKTRGD 251 >gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1] Length = 247 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 154/247 (62%), Gaps = 1/247 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 GP IILV PQL ENIG ARAM N L+ +R+V PR+GW SEKA ++++ AD V+ + Sbjct: 1 MSGPAIILVRPQLSENIGTAARAMLNCGLSDMRIVAPREGWLSEKAIAAASGADRVLLAA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF + K+A+ADL+ ++ATT R+R K V P+EAA + G G++FG ER G Sbjct: 61 KVFESTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAADAEGLKFGVLFGPERTG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190 L N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + + + + PA+K Sbjct: 121 LENDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQCEAAETLPAMTKGSEGPASKE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L+ F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L + Sbjct: 181 KLIFFFEHLERELDSCGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTYR 240 Query: 251 RQSSRRN 257 + + Sbjct: 241 HKKGEKG 247 >gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans OS217] Length = 259 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 21/255 (8%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L L P+ P ++ + SA A ++ + Sbjct: 2 LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKVE-PDGQSIALSAGASDILKHL 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EAIAD + AT+AR+R +L P+EA I L +G V I+FGRE G Sbjct: 61 TRVDSLAEAIADCSLVIATSARSRTLDWPMLDPREAGIKLTAEALNG-PVAIVFGRENNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------------------ENSI 173 L+NEE+ ++ P NP + SLN++QAV ++ +E +I Sbjct: 120 LSNEELQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQLAKMDDSEAAPQAAAI 179 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 V +E +E +L F +LE +L G+ +++ L +F R + Sbjct: 180 VEAETAPEEPQAYPLSADLERFYTHLESTLLATGFVIKNH-PGQIMMKLRRLFSRARVEE 238 Query: 234 EEVFLLRGIVSTLDK 248 +E+ +LRGI++++DK Sbjct: 239 QEMNILRGILTSIDK 253 >gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65] gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65] Length = 253 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 13/253 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVI 68 + I+L+ NIG ARAM + L LV P+ P+ + A + ++ A ++ Sbjct: 2 LENLRIVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLL 61 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S +V S ++AI D + +AR+R+ ++ P++AA E + GQ V ++ GRE Sbjct: 62 ASAKVVSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------ 182 R GLTN+E+A+ I P NP + SLN++ A ++ +E ++ + E Sbjct: 122 RTGLTNDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVRMAALDHQQALEPEYEGDWG 181 Query: 183 ---QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 N AT+GE+ F +LE +L + + P K+++ L +F R + EV +L Sbjct: 182 VSWDNELATQGEMNGFFQHLEETLVDIQFLDP-NNPKQLMPRLRRLFQRAMPDKVEVNIL 240 Query: 240 RGIVSTLDKFSRQ 252 RGI+ + + ++Q Sbjct: 241 RGILKMVLRNNKQ 253 >gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1] Length = 261 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 109/242 (45%), Positives = 148/242 (61%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S PVIIL PQL ENIG VAR M NF L+ LRLVNPRDGWP E+A +S++ AD +++ Sbjct: 5 SYPAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNA 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV+ ++ AIADL IYATTAR R VL P+ AA L+ +GQ VG++FG ER Sbjct: 65 ARVYDSVAAAIADLQLIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGERA 124 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL ++IAL A+++ P++P F SLN++QAV + +E + N +E PAT Sbjct: 125 GLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWRATAADRPPPNFREGPPPATGE 184 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 LL F ++LE LE G+F P EK M+ +L S R +EV LRG+V+ L + Sbjct: 185 ALLGFYEHLERELETAGFFHPPEKTPNMIQNLRSALGRARFTDQEVRTLRGVVTALSRGR 244 Query: 251 RQ 252 + Sbjct: 245 GK 246 >gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 242 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV P +A + ++ A + + V ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEV-DAQAIALASGAADIALNALVVNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD + ++AR+R +L P E A + + V ++FGRER GLTN+E Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSH-VALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + + +E EL Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K + Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINK 241 >gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218] Length = 243 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM Q+ LV+P+ ++ ++ +D + + ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGFKQMVLVDPQCEVDAQAIALAAGASDIAL-NAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L AIAD + T+AR+R +L P+E V I+FGRER GLTN+E Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKFAVE-GEQHPVAIVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLS 194 + + +S P NP + SLN++ AV + +E + + + A EL Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFPTMSEAAYPRHNELEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++K + Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAIEKQA 239 >gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2207] Length = 248 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 7/247 (2%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + I+LV+ NIG ARAM N L +L LV PR+ +P+ +A +A A Sbjct: 1 MSISERQANIRIVLVNTTHPGNIGGAARAMKNMGLAELYLVQPRE-YPAPRAVWRAAGAR 59 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ + ++ EAIAD + T+AR R +L P+E + ++F Sbjct: 60 DVLAGATIVESVDEAIADCALVVGTSARERRIPWPLLNPRECGEKIYSEAAE-HKTALLF 118 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--- 182 GRE GLTN+E+ + + P NP + SLN++ AV ++ +E S+ + N+ Sbjct: 119 GREDRGLTNDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVRMASLADDQGNLPSLSE 178 Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 P T G+L F ++L ++ E ++ P E K++L + +F R + + EV +LRG Sbjct: 179 WDQPPVTAGDLEFFHEHLATTMAELQFYDP-ENPKQLLTRMRRLFNRVRMDQMEVSILRG 237 Query: 242 IVSTLDK 248 ++S + + Sbjct: 238 LLSAVQR 244 >gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2] Length = 246 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 144/246 (58%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP++KA + ++ A + Sbjct: 1 MPRAEHQPAFVLIRPQMGENIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F + AIAD ++YATTAR R K VL P+ A R GQ V ++FG Sbjct: 61 LDEAQIFDDTAGAIADCDYVYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL +E ++ V A Sbjct: 121 ERSGMENDDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQREAVEVDASRVDAAGDWA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + E+ ++ E LE G+F P K + M +L +++ R + R +V +L G++ + Sbjct: 181 EQIEIEKLSEHYEERLEAAGFFYPEHKAENMKLNLRNMWSRMPMTRADVQMLHGMMRQMV 240 Query: 248 KFSRQS 253 ++ + Sbjct: 241 RWKERG 246 >gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 4/245 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L+ NIG ARAM LT L LV+P E+A + +A A ++++ Sbjct: 2 LENIRIVLIGTSHSGNIGSAARAMKVMGLTNLVLVDPACEI-DEQAMALAAGASDIVENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L E I D + ++AR+R L P+E+ I S V I+FGRER G Sbjct: 61 TIVKTLDETIGDCGLVIGSSARSRTLEWPQLDPRESGIKTVNESAS-HPVAILFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATKG 190 LTN+E+ + + P NP + SLN++ AV + +E + + + + Sbjct: 120 LTNDELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIRMAHLDAIKYQGDAKVEEYPRAK 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL F +LE L + + V++ ++ L +F R +E+ +LRG++S+++K Sbjct: 180 ELELFYQHLEKILVKTQFIN-VKQPAMVMAKLRRLFTRARPELQELNILRGVLSSVEKSL 238 Query: 251 RQSSR 255 +S + Sbjct: 239 PKSEK 243 >gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp. RED65] Length = 262 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S I++V NIG ARAM N L+ L LV+P D +PSE+A S +A A +++ Sbjct: 18 SSLSNIRIVMVRTWHPGNIGAAARAMKNMGLSDLVLVDPVD-YPSEQATSMAAGATDLLE 76 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S RV +++ AI D ++AT+AR+R++ + +EAA +N+ I G V I+FG ER Sbjct: 77 SARVVNSIDVAIEDCQLVFATSARSRSHPWPIKEVREAAAHINDEIPQG-KVAIMFGPER 135 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL NEE+ L+ + P NP +P LN++QAV ++ +E + E Sbjct: 136 MGLNNEELRLAQFHMDIPGNPDYPVLNVAQAVQVVCYELFMAQ---RSQPSIESKEYPQV 192 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F +LE +L G+ + + +F R + E+ +LRG++S++DK Sbjct: 193 AELNKFYSHLENTLTRAGFIIKAH-PGQAMLRFKRLFNRARPEKIELNMLRGVLSSIDKL 251 Query: 250 SRQSSRRNN 258 + S +N Sbjct: 252 LERQSNESN 260 >gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis DSM 16069] Length = 277 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 25/276 (9%) Query: 2 TPYAPQLQNSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 TP PQ I+L NIG ARAM L L LV P+D +PSE+A Sbjct: 5 TPQEPQFDPQLLDSIKIVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPKD-YPSEEAMVR 63 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S+ A V+++ +V ++EA+AD I T++RNR ++ P+E ++ E + + Sbjct: 64 SSGALDVLENAQVVDTVEEALADCRLIIGTSSRNRALPWPLIEPREMGELIKEHV-EARP 122 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------- 172 V I+FGRE GL NEE+ L + ++ P NP + SLN++ AV L+ +E S Sbjct: 123 VAIMFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIRLASKMIAEIVR 182 Query: 173 -------------IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 + ++ KE A+ E+ ++LE ++ + ++ P E+ K + Sbjct: 183 KDSQPVDAELGYDAQAESEHDKESEQLASFEEVDGLYNHLESTMNKTEFYNP-EQPKLLP 241 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + I + L + EV +LRG +S++DK+ ++ + Sbjct: 242 ARIRRILAKARLNKGEVNILRGFLSSIDKYIKRHVK 277 >gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 242 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 4/238 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV NIG ARAM LT + LV P +A + +A A + + R+ Sbjct: 5 IRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANRARIV 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S L EAI+D + ++AR+R +L P+EA + E S + +FGRER GLTN Sbjct: 64 STLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPS-HPIAFVFGRERVGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELL 193 EE+ + + P NP + SLN++ AV + +E + S K ++ EL Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEAEYPLNNELE 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F ++LE + + + ++++ + +F R E+ LRGI++ +++ S Sbjct: 183 LFYEHLEKVMMDTDFINKAH-PGQVMNKMRRMFNRARPEIHELRTLRGILTAVERSSN 239 >gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 ILV N+G ARA+ +L LV PR + E+A + ++ A V++ + Sbjct: 15 RFILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGAQDVLEKAEI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +A+ + F A TAR R VL P++ A + + ++FG ER+GL Sbjct: 75 VDTIDQALENCQFAAAITARLREFSPPVLTPRQFAETVL--SDKKKPCALVFGSERYGLP 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-----TPAT 188 NE + A+I+ P NP + SLN++QA+ ++ +EC ++ + + + + PA+ Sbjct: 133 NEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVDHIGFHGDPAS 192 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ +LE L G+ P + KK++ L +F R L EEV +LRGI ++K Sbjct: 193 VEQINGMFAHLESVLTAIGFLNP-DNPKKLMPRLRRLFSRTGLETEEVNILRGIARQMEK 251 Query: 249 FSRQS 253 +R S Sbjct: 252 QARYS 256 >gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris TIE-1] Length = 399 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 108/255 (42%), Positives = 164/255 (64%), Gaps = 2/255 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD Sbjct: 10 KPPAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADH 69 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++++V +F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FG Sbjct: 70 ILNAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFG 129 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185 RER GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + E++ Sbjct: 130 RERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSP 189 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A++ ++ +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V Sbjct: 190 RASQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMA 249 Query: 246 LDKFSRQSSRRNNVL 260 + R+ + VL Sbjct: 250 IAD-GRKGPAKGGVL 263 >gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6] gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O] Length = 242 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV P +A + ++ A + + V ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEV-DAQAIALASGAADIALNALVVNS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD + ++AR+R +L P E A + + V ++FGRER GLTN+E Sbjct: 66 LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSH-VALVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + + +E EL Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F +LE L + + R ++ ++++ + +F R +E+ +LRGI+++++K + Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINE 241 >gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis HTCC2597] Length = 244 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 142/244 (58%), Gaps = 1/244 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV +LV PQ+GENIG ARAMWNF L ++R+ +PRDGWP++KA + ++ A ++D Sbjct: 1 MSQPVFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +F + A+ D ++ATTAR R K V+ P+ A + I G+ V ++FG ER G Sbjct: 61 GIFDSTAGALQDRTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190 L N+++ +N II+ PVNP FPSLN++Q VLL +E +++ ++ + T AT Sbjct: 121 LENDDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRHTVETAPERTDMAGTQWATGI 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ + E L+E G+F P K M +L +++ R L + +V L G++ + ++ Sbjct: 181 EVEKLSGHYEERLDEAGFFFPAHKADTMKLNLRNLWSRMPLTQADVQTLHGVLRQMVRWK 240 Query: 251 RQSS 254 + Sbjct: 241 NRRD 244 >gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] Length = 258 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 147/256 (57%), Gaps = 1/256 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ P P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+E+A + Sbjct: 1 MSDATPPSVTPGGQPAFVLVRPQMGENIGAAARAMWNFGLDRMRVVDPRDGWPNERAVAL 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A ++D+ ++ +L A++D +++ATTAR+R K ++ P+ A + G Sbjct: 61 ASGAGRLLDNAGLYQDLPGALSDCTYVFATTARDRGLTKPIVTPERAMEQTRAILAEGGK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKN 179 VG++FG ER GL N +IA ++AIIS VNP FPSLN++Q VLL +E S V+ E Sbjct: 121 VGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQGSTVAPEVM 180 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + A+ E+ + E LEE G+F P K M L +++ R L R +V L Sbjct: 181 ALAKTDFASNLEVEKLGAHYEERLEEAGFFWPPAKADSMKLTLRNLWGRLNLTRADVQTL 240 Query: 240 RGIVSTLDKFSRQSSR 255 G++ + +++ + Sbjct: 241 HGVMRQMVRWAEGRRK 256 >gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972] Length = 243 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L Q+ LV+P+ ++ ++ +D + + ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLKQMVLVDPQCEVDAQAIALAAGASDIAL-NAQIVDT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L AIAD + T+AR+R +L P+E V I+FGRER GLTN+E Sbjct: 66 LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKFAAE-GEQHPVAIVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLS 194 + + +S P NP + SLN++ AV + +E + + A EL Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFSTMPEAAYPRHNELEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 F +LE L + + EK ++++ L +F R +E+ +LRG+++ ++K + Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAVEKQA 239 >gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + ++LV NIG VARAM N LT+L LV P+ +P+ +A +A+A+ V+ + Sbjct: 2 AFNNIRVVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPK-AFPAPEALWRAASAEDVLAN 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V ++EA+ FI T+AR R + L G+ V I+FGRE Sbjct: 61 ATVVETVEEAVQGAQFIVGTSARERRIPWPLQDAHHCGERLYRHAAQGEEVVILFGREDR 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPA 187 GL NEE+ L N P + +PSLN++ AV ++ +E + + ++E++ A Sbjct: 121 GLLNEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLAGSSATEEDAAWDTPFA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ F +LE +L + + P ++++ L +F R L E+ +LRG++S Sbjct: 181 PAEDMARFYTHLEQTLIDIEFLDPK-APRQLMRRLKRLFNRVRLDEMELNILRGVLSETQ 239 Query: 248 KFSRQSSR 255 K + + + Sbjct: 240 KKTSRGEK 247 >gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493] gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493] Length = 240 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 7/238 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L A+ + ++ T+AR+R + P+E A + + N+ I+FGRER GL Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWPLKTPRECAE---QSVQHQGNIAIVFGRERSGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190 TNEE+A ++ P F SLN++QAV ++ +E + V AT Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIRMAKLNAVDPRHQNTPIQQLATAD 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 241 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 5/238 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM LT L LV+P+ E+ + ++ A + + ++ S+ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCSV-DEQTMALASGAGEIAQNAKIVSS 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++D + ++AR+R +L P+E E V ++FGRER GLTNEE Sbjct: 66 LDEAVSDCQLVVGSSARSRTLEWPMLEPRECGRKFVEE-GESSPVALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194 + + + P NP + SLN++ AV + +E + + P + E Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKERAAFPKAEIPEYSRHEEFEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L ++E ++ G+ + K++ L +F R +E+ +LRG++++++K ++ Sbjct: 185 LLQHIEKVIKLTGFINDGQ-PNKVMTKLRRLFSRARPEVQEINMLRGVLTSVEKMNKN 241 >gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum centenum SW] Length = 266 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 114/252 (45%), Positives = 165/252 (65%), Gaps = 1/252 (0%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + N+ GPV+ILV+PQ+GENIG ARAM N LT+LRLVNPRDGWP+EKA ++SA A Sbjct: 13 SQAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGA 72 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+D RVF+ +EAIADLH +YAT AR R+ K ++ P+ AA L+ + +G+ VGI+ Sbjct: 73 TEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAARDLHAHVAAGRRVGIL 132 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQ 183 FG ER GL N++I LS+ +IS P+NP F SLN++QAVLL+ +E + + E Q Sbjct: 133 FGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQAEEFYTHTGQ 192 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + PATK EL + D+LE L++ G++ +KK M+ ++ + R + +EV GI+ Sbjct: 193 SPPATKEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRTFHGII 252 Query: 244 STLDKFSRQSSR 255 + L +Q +R Sbjct: 253 AALVGRKKQRAR 264 >gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC 19707] gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani AFC27] Length = 247 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 3/241 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 I+LV+ NIG ARAM L L LVNP+ +P +A + ++ AD ++ Sbjct: 2 PLGKVRIVLVETTHPGNIGAAARAMRTMGLCHLYLVNPK-RFPCAEATAMASGADKLLAQ 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V ++L +AI ++ +AR+R+ VL +++ +++ + G V I+FGRE Sbjct: 61 AKVCTSLAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENS 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+N E+ N + P NP + SLN++ AV +M +E S++ ++ E + A+ G Sbjct: 121 GLSNLELDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVRMASMMDDSRHSAESPS-ASIG 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F +LE +L + + K ++ L +F R L E+ +LRGI++ + K + Sbjct: 180 EIEGFFRHLEQTLIKIDFLNS-SNPKLLMRRLRCLFFRAHLNVREINILRGILTAVQKKA 238 Query: 251 R 251 + Sbjct: 239 Q 239 >gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 398 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 110/251 (43%), Positives = 161/251 (64%), Gaps = 2/251 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ AR S++ AD ++D+ Sbjct: 14 DLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILDA 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +F + EA+AD ++ATTAR + K V P+ AA + G GI+FGRER+ Sbjct: 74 VELFETVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRERY 133 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL N E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ Sbjct: 134 GLENHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPYAMPERSEPASQ 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L+ + RP EK+ ML +L +IF R + R+++ L G V + + Sbjct: 194 HQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMDPTRQDIHTLHGAVMAIAE- 252 Query: 250 SRQSSRRNNVL 260 R+ + VL Sbjct: 253 GRKGPAKGGVL 263 >gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] Length = 242 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 133/244 (54%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V Sbjct: 3 LNQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNV 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++++++ AIAD + T+AR R+ S++ P++ + +R G V I+FGRER G Sbjct: 62 QIYADIDSAIADCQLVIGTSARLRHLQNSLVEPRQCGKLAIQRAEQG-KVAIVFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG 190 LTNEE+ + ++FP NP + SLN++ AV L +E + EK +++ T Sbjct: 121 LTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L F + E +E G+ R + ++ L ++ R EL E+ LLRG+++ ++K+S Sbjct: 181 ALEHFFAHTERLYKELGFIRN----EAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236 Query: 251 RQSS 254 + Sbjct: 237 LKQK 240 >gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola LSR1] Length = 260 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 19/260 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 IILV+P NIG ARAM LT+L LV+P + S + +A A VID ++ Sbjct: 4 NIRIILVEPSHPGNIGSAARAMKTMGLTELYLVDPLEKIDS-HTIALAAGASNVIDKAKI 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL +A+A+ I T+AR+R + +L P+E + V ++FGRER GLT Sbjct: 63 VDNLDQAVAECSLIIGTSARSRTHAWPMLHPRECGVKSVSEAH-FAPVALVFGRERSGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189 N E+ + + P NP + SLN++ AV ++ +E + ++ + + + Sbjct: 122 NHELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYEIRNAWLDATRVVTEPPSNLPSSLPSC 181 Query: 190 ------------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 +L F LE L + G+ R +++ L +F R L E+ Sbjct: 182 AVKQKTALYPPNEDLERFYQCLEQVLGDIGFIRQAH-PGQIMTKLRRLFTRARLETVELH 240 Query: 238 LLRGIVSTLDKFSRQSSRRN 257 +LRGI+ +D+ + + + Sbjct: 241 ILRGILHLIDESKKHHAPED 260 >gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 242 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 7/244 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IIL++ NIG ARAM L++LRLV P+ E+A + +A A V+D+V Sbjct: 3 LNQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNV 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++++++ AIAD + T+AR R S++ P++ + +R G V I+FGRER G Sbjct: 62 QIYADIDSAIADCQLVIGTSARLRYLQNSLVEPRQCGKLAIQRAEQG-KVAIVFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG 190 LTNEE+ + ++FP NP + SLN++ AV L +E + EK +++ T Sbjct: 121 LTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L F + E +E G+ R + ++ L ++ R EL E+ LLRG+++ ++K+S Sbjct: 181 ALEHFFAHTERLYKELGFIRN----EAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236 Query: 251 RQSS 254 + Sbjct: 237 LKQK 240 >gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217] Length = 247 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+E+A + ++ A + Sbjct: 1 MPTARPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + + +A+AD F+ ATTAR R K VL+P+ A + E+I +G+ V ++FG Sbjct: 61 LDEALLVESTADAVADCSFVLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL N++IA +NAII+ PVNP F SLN+ Q VLL +E + + V + Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQRAAGQVVPERVDLAKTDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E+ + + E LEE G+F P K M +L +++ R + R +V L G++ + Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKAGSMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240 Query: 247 DKFSRQS 253 ++ +S Sbjct: 241 VRWKARS 247 >gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3] Length = 248 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 119/252 (47%), Gaps = 5/252 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IIL+ NIG ARAM L+ L LV P K+ + SA A V+ + Sbjct: 2 LDNVRIILIGTSHPGNIGSAARAMKTMGLSNLVLVAPECEV-DGKSIALSAGASDVLKNH 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + F+ L+EAIAD + +AR R +L P+E + V I+FGRE G Sbjct: 61 QRFATLEEAIADCGLVIGASARPRTLDWPMLDPREMGEKAV-IEGAKYPVAIVFGRENSG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTN+E+ + + P NP + SLN++ AV + +E + + S K E+ P + E Sbjct: 120 LTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIRMSFLASHAKVELEEEYPLS-EE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L ++L+ +LE+ + P ++ L F R E+ + RG+ S++ K Sbjct: 179 LEGMFNHLQETLEDTRFIVPAH-PGLVMTKLRRFFNRARPEVVELRMWRGVFSSIQKSL- 236 Query: 252 QSSRRNNVLLQK 263 S+R+ + +K Sbjct: 237 ISARKEDPSQEK 248 >gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 404 Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 108/255 (42%), Positives = 164/255 (64%), Gaps = 2/255 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD Sbjct: 15 KPPAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADH 74 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++++V +F ++ EA+ D ++ATTAR + K V P+ AA + SG GI+FG Sbjct: 75 ILNAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFG 134 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185 RER GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ ++ + E++ Sbjct: 135 RERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSP 194 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A++ ++ +F L L+ + RP EK+ ML +L +IF R E ++++ L G+V Sbjct: 195 RASQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMA 254 Query: 246 LDKFSRQSSRRNNVL 260 + R+ + VL Sbjct: 255 IAD-GRKGPAKGGVL 268 >gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella vestfoldensis SKA53] Length = 246 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 146/246 (59%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +L+ PQ+GENIG AR MWNF L ++R++ PRDGWP+++A + ++ A + Sbjct: 1 MPMTNPQPAFVLIRPQMGENIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F + AIAD F+YATTAR R K VL+P+ A RI +G V ++FG Sbjct: 61 LDEAQLFEDTAAAIADCDFVYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL+ +E + A Sbjct: 121 ERAGMENDDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRRVTGEVVALRHDAPGDWA 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T+ E+ D+ + L+E G+F P K M +L +++ R L R +V +L GI+ + Sbjct: 181 TQLEVEKLADHYQDRLDEAGFFFPDHKAANMQMNLRNLWSRLPLTRADVQMLHGILRQMV 240 Query: 248 KFSRQS 253 ++ + Sbjct: 241 RWKERG 246 >gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC 51142] Length = 247 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 4/249 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +++ I+LV+P N+G VAR M N L QL LV P S++A+ + + V+ Sbjct: 3 ESALTRVRIVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAKLMAVHGIDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +V + EA+ H I ATT R+ + + P+EA L + N ++FG E Sbjct: 63 EKSQVVHTIPEALQGCHRIIATTGRSLSLPTHLETPREALPWL---LTENFNTALLFGPE 119 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL NEE+ + + P N + SLN++QAV + +E + + E + PA+ Sbjct: 120 DRGLNNEELNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQAAQNPIESKLDPSFEPAS 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + +LE L + GY P K ++ + ++ + L EEV LLRGI+ +D Sbjct: 180 FEALEGYYQHLEAVLLKIGYLYPHTAKARL-EKFRRLYNKANLTNEEVALLRGILRQVDW 238 Query: 249 FSRQSSRRN 257 + + Sbjct: 239 VCQFIPPKK 247 >gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter uraniireducens Rf4] Length = 245 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S I+LV Q NIGMV RAM N LT LRLVNP +A + +A ++D Sbjct: 2 DSKGTIAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNP-CQVDHPEALKFAVSARDLLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S R+FS+L+EA+ D ATT R+ + + P+E A +N + V ++FGRE Sbjct: 61 SARIFSSLEEALEDCEISVATTRRHGKYRQEISTPEEIAARVNAQAG-MHRVALVFGRED 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLT +E+A+ + P + SLN++QAVL+ +E ++ VS E A Sbjct: 120 SGLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFKDKGVSP---ASEPRPLAGS 176 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + S +E +L G+ P + ++ L I+ R EL EV +LRG++S +D Sbjct: 177 AAMESLYGQMERTLLRIGFLNP-QNPAHLMRTLRRIYSRAELDEREVAVLRGMMSQIDWA 235 Query: 250 SRQSSRRNN 258 + + + Sbjct: 236 ASEFKGKKG 244 >gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 247 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + P +LV PQ+GENIG +RAMWNF+L ++RLV PRDGWP+ KA + ++ A + Sbjct: 1 MPTEQPQPSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F EA+ D +++ATTAR R K +P+ A + E+I G+ V ++FG Sbjct: 61 LDEAQLFQTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186 ER G+ N++IA +NA+I+ PVN F SLN++Q VLL+ +E ++ E+ + Sbjct: 121 ERAGMENDDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQVGNITHERTEMAKTVW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A++GE + + E L++ G+F P EK + M +L +++ R L R +V +L G++ + Sbjct: 181 ASQGETEALAKHYEDRLDDAGFFFPPEKVESMQMNLRNMWSRMPLTRADVQMLHGVLRQM 240 Query: 247 DKFSRQ 252 ++ + Sbjct: 241 VRWKNK 246 >gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. TM1035] Length = 247 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +LV PQ+GENIG ARAMWNF L ++RLV PRDGWP+ KA + ++ A + Sbjct: 1 MPSDRPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + ++ A+ D ++ ATTAR R K VL+P+ A +V E+I +G+ V ++FG Sbjct: 61 LDEALLVADTAAAVGDCTYVLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER GL N++IA +NAII+ PVNP F SLN+ Q VLLM +E + + V + Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQRAAGQVVPERVDLAKTDW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E+ + + E LEE G+F P K + M +L +++ R + R +V L G++ + Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKVESMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKARG 247 >gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202] Length = 251 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 14/257 (5%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P ++ N+ I+L++ NIG ARAM LTQL LV+P+ E+A S Sbjct: 1 MQPNRTKM-NNLDQIKIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQPI-DEQAVSL 58 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 +A A V+D+ + F++ +EAIAD H + T+AR R+ +++ P++ + + G Sbjct: 59 AAGAKDVLDNAQTFASFEEAIADCHIVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKG-K 117 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--- 177 V ++FGRER GLTNEE+ + ++ P NP + SLN++ AV L +E + + Sbjct: 118 VALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVRMAWLAQQDLQK 177 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 + E+ + L F ++ E +E G+ R ++ L ++ R L Sbjct: 178 NSQISPLAERAAYPSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLET 233 Query: 234 EEVFLLRGIVSTLDKFS 250 E+ LLRG+++ ++K+ Sbjct: 234 NELNLLRGMLTAVEKYH 250 >gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 261 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 144/241 (59%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV++L Q+ +NIG VAR M NF L++LRLV+PRDGWP ++A ++++ AD V+D V Sbjct: 4 LTPPVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGV 63 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF ++ EAIADL+ ++ATTAR R + V P+E+A +L + SG G++FG ER G Sbjct: 64 KVFDSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAG 123 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L +IAL I + P++P SLN++QAV + +E + + +E PA+ Sbjct: 124 LETGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDL 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 LL ++LE L+ G+F P EK++ M +L + R +EV +RG + L K Sbjct: 184 LLGMYEHLEAELDNGGFFYPPEKRRSMSQNLRVMLGRAAFTEQEVATMRGAIHALAKGRG 243 Query: 252 Q 252 + Sbjct: 244 R 244 >gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 256 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P IILV+PQ+GENIGMVARAM NF L LRLV PRDGWP+EKAR++++ AD V+D+ RV Sbjct: 12 PPAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAARV 71 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L++A+ADL +YATTAR R+++K V P+EAA L +G G+IFGRE++GL Sbjct: 72 FEKLEDALADLSLVYATTARARDSYKPVRGPEEAAERLVAHAPAG-KTGVIFGREKYGLE 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGEL 192 N+E+ L++ I++FPVNP F SLNI+QAVLL+ + S + + N PA K +L Sbjct: 131 NDEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRNASNPSKTPRFSAPPNPPAEKADL 190 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+LE L+ R YF P EK++ ++ +L ++ + + +EV LRG++ +LD+ ++ Sbjct: 191 YRLFDHLEAMLDCRNYFFPPEKREALVQNLRTMLTKAQFSEQEVRSLRGVLKSLDRPAQH 250 >gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus HTCC2516] Length = 247 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + P +L+ PQ+GENIG ARAMWNF L ++RLV PRDGWP+ A + ++ A + Sbjct: 1 MPTDRPQPAFVLLRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++F + AI+D F+YATTAR R K V+ P+ A R+ G+ V ++FG Sbjct: 61 LDEAQLFDTTEAAISDTTFVYATTARPRELTKPVMTPEAAMSDAAARVARGEKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186 ER G+ N +IA ++AI+S PVNP FPSLN++Q VLL+ +E + ++ +K ++ Sbjct: 121 ERAGMENADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRRATSQTAPVRLKGQRTEL 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E+ D+ E L E G+F P K + M +L +++ R L R +V +L GI+ + Sbjct: 181 AERLEVERLGDHYEERLAEAGFFFPEHKAEGMRLNLRNLWSRMPLTRADVQMLHGILRQM 240 Query: 247 DKFSRQS 253 ++ + Sbjct: 241 VRWKERG 247 >gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella dagmatis ATCC 43325] Length = 241 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ NIG ARAM L+ L LV PR E+A + SA A+ V+ Sbjct: 2 LDNIRIVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQAI-DEQAIALSAGAEDVVKQA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+AD + T+AR R+ +++ P++ A+ E + SGQ V I+FGRER G Sbjct: 61 VIVDSFDKAVADCSLVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQ-VAIVFGRERIG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPAT 188 LTNEE+ ++ P NP + SLN++ AV L+ +E + E ++ Sbjct: 120 LTNEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYELRMAFLSVKEMSLSLSTIGKIYPN 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F + E E G+ + + ++ L ++ R EL + E+ +LRG++S ++K Sbjct: 180 FSDIEHFFQHTERLYTELGFI----QNQSVMQKLRRLYQRAELEKNELNILRGMLSAVEK 235 Query: 249 FSRQSS 254 + SS Sbjct: 236 RIKSSS 241 >gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum 2002] Length = 254 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 3/252 (1%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P++ + K ++L P NIG ARAM L++L LV P+ +PS +A + ++ A Sbjct: 3 KPEVPDFLKNIRVVLARPSHPGNIGSAARAMKTMGLSRLYLVEPK-TFPSPEADTLASGA 61 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++ V + L EA++D+ A T+R R + P++ L R G+ V ++ Sbjct: 62 VDLLQHAVVVNTLAEALSDVTVACALTSRRRELTTPLSTPRQTTPELVARARDGEQVALV 121 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FG E +GL+ +E+ N +++ P NP + SLN++ AV +M +E ++ V + ++ + Sbjct: 122 FGNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSHTGVDVDY-LRAEA 180 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT+ E+ F +L+ +L + GY ++++ L ++F R L+REE+ +LRG + Sbjct: 181 ESATRDEVEGFCGHLDQTLADIGY-YERRNGERLMRRLRTLFNRAHLLREEIDILRGFLK 239 Query: 245 TLDKFSRQSSRR 256 + + + + R Sbjct: 240 QVQRVAHRDDGR 251 >gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris DX-1] Length = 400 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 107/254 (42%), Positives = 165/254 (64%), Gaps = 2/254 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A +SA AD ++++ Sbjct: 14 ALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNA 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +F ++ +A+AD ++ATTAR + K V P+ AA + I +G GI+FGRER Sbjct: 74 VELFDSVADAVADCALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERH 133 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ Sbjct: 134 GLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPFAMPERSEPASQ 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L+ + P EK+ ML +L +IF R + ++++ L G + + + Sbjct: 194 HQMQAFFDNLVAELDRVEFLCPPEKRDTMLVNLRNIFTRMDPTKQDIHTLHGAIMAIAE- 252 Query: 250 SRQSSRRNNVLLQK 263 R+ + VL + Sbjct: 253 GRKGPAKGGVLDGE 266 >gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh 114] Length = 251 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 146/240 (60%), Gaps = 1/240 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV PQ+GENIG ARAMWNF L +R+V PRDGWP++ A + ++ A V+D+ ++ Sbjct: 12 AFVLVRPQMGENIGASARAMWNFGLEHMRVVAPRDGWPNQAAVALASGAGRVLDNAQLSD 71 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L ++ D F++ATTAR R+ K V +P+EA V +RI +G+ + ++FG ER GL N+ Sbjct: 72 DLPGSVGDCSFVFATTARPRDLTKPVFSPEEAMRVAAQRIAAGERIAVLFGPERAGLEND 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELLS 194 +IA +NAIIS PVNP FPSLN++Q VLL+ +E M + + V T A E+ Sbjct: 132 DIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMRATHDVTPHTVDMSGTQWADHIEVEH 191 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + E LEE G+F P K M +L + + R + R +V +L G++ + ++ + Sbjct: 192 LATHYEDRLEEMGFFFPAHKSHSMRVNLRNFWSRMPMTRADVQMLHGMMRQMVRWKTRGD 251 >gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] Length = 251 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 7/252 (2%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A +D +VF L Sbjct: 2 ILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDTL 61 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + AIADL +YATTAR R + P+E+A L E + G+ VG++FG ER GL ++I Sbjct: 62 EAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLETDDI 121 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFL 196 AL AI+S P++ F SLN++QAV + +E K + PA + LL Sbjct: 122 ALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAALLGLY 181 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 +LE LE+ G++ P EKK M+ +L + R L +EV RG+++ L K R Sbjct: 182 GHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG------R 235 Query: 257 NNVLLQKTEKSE 268 VL + EK++ Sbjct: 236 GRVLAKLAEKAK 247 >gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxidans DMS010] gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga thiooxydans DMS010] Length = 253 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 4/243 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S +LV NIG ARAM L+ L LV+P+ +PS +A + ++ AD ++ + Sbjct: 14 SMDNIRFVLVGTTHPGNIGAAARAMKTMGLSNLHLVSPK-LYPSAEATARASGADDILHT 72 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V +L EA+ H +A +AR R+ V+ P++ A+ E+ ++ I+FGRE Sbjct: 73 AQVHDSLDEALVGCHHAFAMSARLRHLPVPVVNPRQ-AVEQLEKFDDNTHIAIVFGREHS 131 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATK 189 GL+NEE+ +I+ P NP + SLN++ AV ++ +E + + EQ T Sbjct: 132 GLSNEELDRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSFQPQIDFGRIGEQREAITN 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L D+ E SL G+ P E + ++ + +F R +L + E+ ++ GI+ + Sbjct: 192 DDLAHLYDHFERSLTTIGFLDP-ENPRHLMRRIKRLFNRADLDKNELHIMHGILRAAETK 250 Query: 250 SRQ 252 +++ Sbjct: 251 AKE 253 >gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 8/244 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +LV+ NIG ARA+ N ++L LVNPR D E+A + ++ A ++ S R+ Sbjct: 8 RFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILASARI 67 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++EA+AD ++ A TAR R V+ P+E A L + G +IFG ER+GL Sbjct: 68 VGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEA--GLQAAVIFGNERFGLP 125 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKG 190 NE + N +I+ P NP + SLN++QAV ++ +E +IV + N+ Q A Sbjct: 126 NEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAAGMA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +LE +L + + KK++ L +F R +L EEV +LRGI + Sbjct: 186 QIEGMYAHLEQALVAIDFLD-ADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQILAKQ 244 Query: 251 RQSS 254 + S Sbjct: 245 KNGS 248 >gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 258 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 103/251 (41%), Positives = 157/251 (62%), Gaps = 1/251 (0%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P + GP +ILV PQLGENIG ARAM N LT LRLV PRDGWP+ KA ++++ AD Sbjct: 7 PTRDSILGGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGAD 66 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 VI++ R+F EA+ADL ++ATT R R+ + + P+ AA + ER +GQ +G++F Sbjct: 67 PVIENARIFETTAEAVADLEAVFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQKLGVMF 126 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQN 184 G ER GL N+++ L+ +++ P+NP F SLN++QAVLL+ +E + + ++ + Q Sbjct: 127 GPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQT 186 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PAT E ++F + LE +L+ G+F EK+ M+ L + F R E+ +EV G+V+ Sbjct: 187 RPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVA 246 Query: 245 TLDKFSRQSSR 255 L + SR+ Sbjct: 247 ALVQGSRRKGE 257 >gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501] Length = 248 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 4/249 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + I+LV+P N+G VAR M N L QL LV P ++AR + + V+ Sbjct: 3 ETALARVRIVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEARLMAVHGVDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +V + EA+ I ATT R+ + + P+ A L + G N ++FG E Sbjct: 63 EQSQVVETIPEALQGCQRIIATTGRSLSLPTHLETPRGALPWL---LAEGLNSALMFGTE 119 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL NEE+ + +S P NP +PSLN++QAV + +E + + E A+ Sbjct: 120 DRGLNNEELKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQAAQDPLESETDSYFEGAS 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + +LE L + GY P K ++ + ++ + L EEV LLRGI+ ++ Sbjct: 180 FELLEGYYQHLEEVLLKIGYLYPHTAKARL-EKFRRLYNKANLTPEEVALLRGILRQVNW 238 Query: 249 FSRQSSRRN 257 ++ +N Sbjct: 239 AAQFIPSKN 247 >gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium NOR51-B] Length = 244 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 6/245 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+LV NIG ARAM N L++L LV PR+ +P+ +A +A+A V++S Sbjct: 2 NTDNIEIVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPRE-FPAPEATWRAASASDVLNS 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R+ ++ EAIAD F+ T+AR R VL P+ A L + V I+FGRE Sbjct: 61 ARIVDSVDEAIADSQFVVGTSARGRRIPWPVLDPRRCAERL-AVSSRTERVAILFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPA 187 GLTNEE+ N P + + SLN++ AV ++ +E + +++ Sbjct: 120 GLTNEELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELRMWGLAERLPEAADEDWDVPFV 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E+ F +LE +L + G+ P ++++ L +F R + E+ +LRGI++ Sbjct: 180 TTEEMTRFYRHLEETLTDIGFLDPA-APRQLMPRLARLFNRVRIDDMEMGILRGILTEAQ 238 Query: 248 KFSRQ 252 K + + Sbjct: 239 KSAGK 243 >gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305] Length = 244 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 13/249 (5%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N I+L++ NIG ARAM L QL LV+P+ E+A S +A A V+D Sbjct: 2 NILDQIKIVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQPI-DEQAVSLAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + F++ +EAIAD + T+AR R+ +++ P++ + + G V ++FGRER Sbjct: 61 NTQTFASFEEAIADCQLVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKG-KVALVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------KNVKE 182 GLTNEE+ + ++ P NP + SLN++ AV L +E + + + E Sbjct: 120 IGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIRMAWLAQQDLQKNSQIVPLTE 179 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + + L F ++ E +E G+ R ++ L ++ R L E+ LLRG+ Sbjct: 180 SSDYPSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLETNELNLLRGM 235 Query: 243 VSTLDKFSR 251 ++ ++K+ R Sbjct: 236 LTAIEKYRR 244 >gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU Goat Q177'] gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 331] gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 334] gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212] gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154] Length = 240 Score = 294 bits (753), Expect = 9e-78, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 7/238 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L A+ + ++ T+AR+R + +E A + + N+ I+FGRER GL Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWPLKTARECAE---QSVQHQGNIAIVFGRERSGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190 TNEE+A ++ P F SLN++QAV ++ +E + V AT Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter autotrophicus Py2] Length = 298 Score = 294 bits (753), Expect = 9e-78, Method: Composition-based stats. Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 6/262 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A GPV+ILV+PQLG+NIG ARAM NF L++LR+VNPR+GWPSE AR SA AD ++ Sbjct: 14 AGGPVVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEA 73 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L+ A+ +++ +A TAR R K VL A R+ G++V ++FGRER G Sbjct: 74 VLYPDLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190 L EE++L +AI++ PVNP F SLN++ V + +E + + +P A KG Sbjct: 134 LYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYEWFKAETGGALPFAPPDRSPLADKG 193 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--- 247 +LL+F D+LE +LE+ G+FR EK + +L +IF R L R+++ L G V+ L+ Sbjct: 194 DLLAFFDHLEGALEQSGFFRSPEKAPSTIRNLRNIFHRLGLTRQDLATLHGAVTALEEGR 253 Query: 248 --KFSRQSSRRNNVLLQKTEKS 267 + +R++ R + + K+ K+ Sbjct: 254 AGRDARKTIRIADAAIHKSRKA 275 >gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC 11170] Length = 279 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 104/236 (44%), Positives = 154/236 (65%), Gaps = 1/236 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P I+LV PQL ENIGMVARAM N LT LRLV PR+ W +EKA +S++ AD ++ R Sbjct: 16 NAPAIVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREAR 75 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F + AIAD++ +YATTAR R+ K VL P+ AA L ++ +G+ ++FG ER GL Sbjct: 76 FFETTEAAIADINRVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGL 135 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGE 191 +N+++AL++AI+ P+NP + SLN++QAVLL+ +E + + E+ V PAT+GE Sbjct: 136 SNDDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQAGDATPAEQLVTNDTQPATRGE 195 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 LL F D+LE L++ G+ R K+ M+ +L ++F R +L +E+ L G+V L Sbjct: 196 LLGFFDHLERELDDCGFLRNAAKRPGMVRNLRNLFERADLTEQEIRTLHGVVKELR 251 >gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium vulgare Y25] Length = 245 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 1/242 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + P +L+ PQ+GENIG ARAMWNF L ++R++ PRDGWP+EKA + ++ A + Sbjct: 1 MPTATPQPAFVLIQPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRL 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D ++++ EAIAD F+YATTAR R K V++P+ A + RI G+ V I+FG Sbjct: 61 LDEAQLYATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TP 186 ER G+ N++IA +N II+ PVNP FPSLN++Q VLL +E + ++ ++ Sbjct: 121 ERAGMENDDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRRAADAVVDERIEMAGAEW 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A ++ + + E L+E G+F P K + M +L +++ R L R + L GI+ L Sbjct: 181 ANNADIEALATHFEERLDEAGFFFPEHKAQSMKLNLRNLWSRMPLTRADTATLHGILRQL 240 Query: 247 DK 248 + Sbjct: 241 LR 242 >gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 242 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 5/239 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV NIG ARAM L+Q+ LV P ++ ++ +D + + +V S Sbjct: 7 IVLVGTSHSGNIGSAARAMKVMGLSQMVLVAPECAVDAQAIALAAGASDIAL-NAQVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+A+ + ++AR+R +L P++ V ++FGRER GLTNEE Sbjct: 66 LSEAVAECGLVVGSSARSRTLEWPMLDPRQCGEQF-AIEGQTHPVAVVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194 + L + + P NP + SLN++ AV + +E + + EL Sbjct: 125 LQLCHYHVCIPANPEYSSLNLAMAVQTLCYEIRVAHLTHQQGEFPSPTMVDYPRHQELDR 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE L E + P + ++++ L +F R +E+ +LRG+++ ++K RQ Sbjct: 185 FYQHLERVLLESEFISPSQ-PGQVMNKLRRLFSRARPEAQEINILRGVLTAVEKKMRQP 242 >gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] Length = 257 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 142/242 (58%), Gaps = 1/242 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A P I+L+ PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A + Sbjct: 13 MPTDAPQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRL 72 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D V ++ IAD ++YATTAR R K V +P+ A RI G+ V +IFG Sbjct: 73 LDEAEVSDDVASGIADRTYVYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGP 132 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TP 186 ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E + V+ Q P Sbjct: 133 ERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRRAVAEVVDVVVQGQTVEP 192 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + ++ + + E L + G+F P K M +L +++ R + R +V +L G++ L Sbjct: 193 ADQRDIEALARHYEDRLNDAGFFYPEHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 252 Query: 247 DK 248 + Sbjct: 253 LR 254 >gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12] Length = 249 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 3/252 (1%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M L I+LV NIG ARAM N +L LV P++ +PS+ A Sbjct: 1 MDDKKNTLLELLDTVKIVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKE-FPSDVATYR 59 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S A +++ +F+ L++A+AD + T+AR+R +L PKE+A + + + Q Sbjct: 60 SKAAKDILEEAEIFNTLEQAVADCELVIGTSARDRKVPWPILNPKESAETVVKNLPQ-QK 118 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FGRE GLTNEE+ L N + P +P + SLN++QAV ++V+E S+ +E Sbjct: 119 VALVFGREDRGLTNEELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIRVASLSDTEDKN 178 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 A + +++++ +++ ++ V+ +K+L + F R + E + R Sbjct: 179 YWDVELANTQQTEMLINHMDELMQQVEFYD-VDNPRKLLLRVRRFFKRSNIDVMEANIFR 237 Query: 241 GIVSTLDKFSRQ 252 G+ +T+ K +Q Sbjct: 238 GLFATIQKKLKQ 249 >gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus AQ3810] gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus Peru-466] gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AN-5034] gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus AQ4037] gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio parahaemolyticus K5030] gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329] Length = 239 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+QL LV+P+ E+ + +A A + + +V S Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAADIAQNAQVVST 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAI D + ++AR+R +L P+E V ++FGRER GLTNEE Sbjct: 66 LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELLS 194 + + + P NP + SLN++ AV + +E + +K E EL Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQKQFSPVEVEEYPRHKELEM 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F D+LE + E + E+ ++++ L +F R +E+ +LRGI+++++K Sbjct: 185 FFDHLEKVIVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237 >gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 255 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 98/253 (38%), Positives = 152/253 (60%), Gaps = 1/253 (0%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++ P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWPSEKA + ++ A Sbjct: 3 RAMTDTPSQPAFVLVRPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAG 62 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++D ++ + EA+AD +++ATTAR R+ K V+ P+ A I GQ V ++F Sbjct: 63 RLLDEAGLYGSTAEALADADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLF 122 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G ER GL NE+IAL+NAI+S PVNP FPSLN++Q VLL +E + + + ++ T Sbjct: 123 GPERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQTTDTPAEVMEMAGT 182 Query: 186 -PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A E+ + D+ E +EE G+F P K + M ++ +++ R L +V L G++ Sbjct: 183 RYANGAEITALGDHFETRMEEAGFFFPDHKAESMKLNMRNMWSRLPLTLADVQTLHGVLR 242 Query: 245 TLDKFSRQSSRRN 257 L ++ +S + Sbjct: 243 QLVRWKDRSGGAS 255 >gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 241 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM LT L LV+P+ E+A + +A A ++ + Sbjct: 2 LNNVKVVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCEI-DEQAIALAAGAADIVQAA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L +A+AD + ++AR+R +L P+E E+ + V ++FGRER G Sbjct: 61 LIVNTLNDAVADCSLVVGSSARSRTLEWPMLEPRECGKKFVEQ-GAMSQVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189 LTNEE+ + + P NP + SLN++ AV + +E + + E Sbjct: 120 LTNEELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKQQSQYQPNEVAEYPRH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL F +LE + + E+ K+++ L +F R +E+ +LRG++++++K Sbjct: 180 KELEMFFSHLEKVATKTQFI-SDEQPGKVMNKLRRLFNRARPEAQELNILRGVLTSIEKK 238 Query: 250 SRQ 252 Q Sbjct: 239 INQ 241 >gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 256 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 150/247 (60%), Gaps = 1/247 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L+ PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD Sbjct: 9 PLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGADR 68 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++++ V ++ +A+ADLH +YAT R R+ K VL + A L G VG++FG Sbjct: 69 ILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFG 128 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185 ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + + + Sbjct: 129 PERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPRELMTNETH 188 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 ATKGEL +FL +LE L++ G+ R +K+ M+ +L F R E+ +E+ L G+V Sbjct: 189 VATKGELENFLQHLERELDDCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRE 248 Query: 246 LDKFSRQ 252 L R+ Sbjct: 249 LAHPRRK 255 >gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451] Length = 244 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P++ L V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S+ +++ EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336] gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus 2336] Length = 246 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 10/241 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG ARAM L QL LV P+ G E+A + +A A+ V+ S Sbjct: 2 LENIKIVLVETSHSGNIGSAARAMKTMGLNQLCLVAPKQGI-DEQAVALAAGAEDVVKSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + +A+AD I T+AR R+ +++ P+E A + + + S Q V I+FGRER G Sbjct: 61 VVADSFSQAVADCSLIIGTSARLRHLQSTLIEPRECAEKVIQSLSS-QKVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPA 187 LTN+E+ + ++ P NP + SLN++ AV L+ +E + S ++ + N Sbjct: 120 LTNDELLKCHYHLTIPANPEYSSLNLAMAVQLISYELRLAWLASLKELKQPFSVIANNYP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F + E ++ G+ + + ++ L ++ R +L + E+ +LRG++S ++ Sbjct: 180 TFQELEHFFAHTEQLYQQLGFI----QNQGVMKKLRRLYQRVQLEKNELNILRGMLSAVE 235 Query: 248 K 248 K Sbjct: 236 K 236 >gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 269 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 144/252 (57%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ + P +IL Q+ ENIG VAR M NF LT LRLV PRDGWP E+A ++ Sbjct: 1 MSASSEFAPPDLTPPAVILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V++ VRVF ++ EA+ADL+ ++ATTAR R + V P+EA +L + SG Sbjct: 61 ASGADWVLEGVRVFDSVAEAVADLNTVFATTARPRETRQPVRTPREAGRILYDDTASGLK 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 G++FG ER GL +IAL I++ P++P SLN++QAV + +E + + Sbjct: 121 TGLLFGGERAGLETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRF 180 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 ++ PA+ L+ ++LE LE G+F P EKK+ M +L + R +EV +R Sbjct: 181 RDSEPPASNDLLVGMYEHLEAELELGGFFYPPEKKRSMSQNLRVMLGRAAFSEQEVATMR 240 Query: 241 GIVSTLDKFSRQ 252 G + L K + Sbjct: 241 GAIHALAKGRGR 252 >gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199] gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199] Length = 264 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T + + ++ GP ++LV PQLG+NIG ARAM N L +RLV PRDGWP+ +A + + Sbjct: 4 TDRSRGMADATVGPAVVLVQPQLGDNIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMA 63 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A V+D RVF EA ADL+++ ATT R R+ K L P+ AA+ L +R+ GQ V Sbjct: 64 SGATAVLDRARVFETTAEACADLNYVLATTTRTRDMKKPALTPRTAALELRKRVALGQGV 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 G++FG ER GL NE++ L++A++S P+NP F SLN++QAVLL+ +E + + + Sbjct: 124 GLLFGPERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQAEDATPPLTMM 183 Query: 182 EQNTPA-TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 ++++P T F LE L+E G+F P + +L ++F R + +EV L Sbjct: 184 DEDSPPVTVKAREFFFTRLEALLDEAGFFYPDHLAPTIKRNLRTLFTRAGMSEQEVQTLH 243 Query: 241 GIVSTL 246 G++ L Sbjct: 244 GVLKAL 249 >gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 255 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 1/248 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S GP IILV PQL ENIG ARAM N LT +R+V PR+GW SEKA ++++ AD ++ S Sbjct: 7 SRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLLS 66 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +VF K+A+ADL+ ++ATT R+R K V P+EAA + GQ G++FG ER Sbjct: 67 AKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPERT 126 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL N+++A+++ +++ P+NP + SLN++QAVLL+ +E + + K PATK Sbjct: 127 GLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGAEGPATK 186 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +L+ F ++LE L+ G+ R +K+ M+ ++ ++F R L +E+ L GIV L + Sbjct: 187 EKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTY 246 Query: 250 SRQSSRRN 257 Q Sbjct: 247 RHQKGEGK 254 >gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110] Length = 398 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 110/254 (43%), Positives = 169/254 (66%), Gaps = 2/254 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S GP++ILV+PQLGENIGM ARAM NF L++LR+VNPRDGWP+ A+ ++A AD +++ Sbjct: 12 SLDGPIVILVEPQLGENIGMAARAMGNFALSRLRIVNPRDGWPNIAAQRAAAGADYILEK 71 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +F + EA+ADL ++ATTAR + K V+ P+ AA ++ + +G GI+FGRERW Sbjct: 72 VELFDTVGEAVADLDLLFATTARPHDQAKPVVGPEAAAAEISGHVATGGKAGILFGRERW 131 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GLTNEE+ L+N II+FPVNP F SLN++QAVLL+ +E + + + E++ A++ Sbjct: 132 GLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYEWFKLATSGELPHAMPERSERASQ 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 192 HQMQAFFDNLIRELDKVEFLRPAEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAE- 250 Query: 250 SRQSSRRNNVLLQK 263 R+ + VL + Sbjct: 251 GRKGPAKGGVLDGE 264 >gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001] Length = 256 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 148/247 (59%), Gaps = 1/247 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L+ PV+ILV PQ+ ENIG ARAM N L LRLV+PRDGWP E+A +S+ AD Sbjct: 9 PLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGADR 68 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++++ V ++ +A+ADLH +YAT R R+ K VL + A L G VG++FG Sbjct: 69 ILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFG 128 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185 ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E + + + Sbjct: 129 PERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPHELMTNETH 188 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 ATKGEL +FL +LE L+ G+ R +K+ M+ +L F R E+ +E+ L G+V Sbjct: 189 VATKGELENFLQHLERELDSCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRE 248 Query: 246 LDKFSRQ 252 L R+ Sbjct: 249 LAHPRRK 255 >gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 399 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 168/250 (67%), Gaps = 2/250 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID V Sbjct: 13 IAGPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHV 72 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R+F L EAIADL ++ATTAR+ + K V+ P+ AA + +I SG GI+FGRER G Sbjct: 73 RLFETLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIASGGRAGILFGRERSG 132 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190 LTNEE+A +N II++PVNP F SLN++QAVLLM +E + + + E++ AT+ Sbjct: 133 LTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTSGALPFAMPERSERATQE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ +F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QMEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDMHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU 1054] gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia HI2424] Length = 289 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61 +P +LV+P N+G ARA+ ++L LV PR +A + + Sbjct: 32 SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + AD V+ S V L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ Sbjct: 92 SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAATQASAQVGTG-DI 150 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177 ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E E + S Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + E T A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 211 QPQAEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269 Query: 238 LLRGIVSTL 246 +LRGI + Sbjct: 270 ILRGIAKHI 278 >gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110] Length = 248 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 4/249 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + I+LV+P N+G VAR M N +L QL LV P E+AR + + V+ Sbjct: 3 ETALTRVRIVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEARLMAVHGIDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +V + +A+ H I ATT R+ + + P+ A L + N +IFG E Sbjct: 63 EKSQVVDTIPQALQGCHRIIATTGRSLSLPTHLETPRNALPWL---LTDDLNTALIFGPE 119 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL NEE++ + + P N + SLN++QAV + +E + + E PA Sbjct: 120 DRGLNNEELSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQVAQNPLENTSNPSFDPAA 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + +LE L + GY P K ++ + ++ + L EEV LLRGI+ +D Sbjct: 180 FEALEGYYQHLEAVLLKIGYLYPHTAKARL-EKFRRLYNKANLTTEEVALLRGILRQVDW 238 Query: 249 FSRQSSRRN 257 + S +N Sbjct: 239 ACQDFSSKN 247 >gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus KT] Length = 251 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 3/238 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N + I+L NIG ARAM L+QL LV P+ +P +A + ++ A ++D Sbjct: 6 NLLQQIRIVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPK-SFPHAEATAMASGATDILD 64 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +V + L EA+ +AR R +++ + E V I+FG E Sbjct: 65 NTQVCATLAEALHGTTLAIGMSARRRELSHELVSARTGVQRAIE-AAHDAPVAIVFGTEM 123 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL+N E+ + P NP + SLN++ AV ++ +E + E AT Sbjct: 124 SGLSNAELDHCQLLAMIPANPEYSSLNLAAAVQVISYELRMAVLDHPGPTRTESAPLATS 183 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E+ +LE L E G+ P + K+++ L ++ R L +EEV +LRGI+S Sbjct: 184 EEIERLYAHLEQVLIEIGFLNPAQ-PKRLMQRLRRMYGRARLEKEEVNILRGILSATQ 240 >gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z] gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus succinogenes 130Z] Length = 249 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 12/244 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K I+LV+ NIG ARAM LT L LV P+ +A + SA A+ VI + Sbjct: 2 LKNIRIVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSRI-DAQAVALSAGAEDVIKNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + EA+AD + T+AR R+ S++ P+E E + I+FGRER G Sbjct: 61 VLVPSFDEAVADCSLVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-------KEQN 184 LTN+E+ ++ P NP + SLN++ AV L+ +E + + + Sbjct: 121 LTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLKVRTMPFSVIENMNQMPS 180 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT EL F ++LE + + + + ++ L ++ R ++ + E+ +LRG++S Sbjct: 181 PLATARELEYFYEHLERLYTQLNFI----QNQSVMHKLRRLYQRADIEKNELNILRGMLS 236 Query: 245 TLDK 248 ++K Sbjct: 237 AVEK 240 >gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 711 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 149/244 (61%), Gaps = 1/244 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD ++++ Sbjct: 468 NSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAAT 527 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V ++ +AIADLH ++AT R R+ K+VL + A L + G G++FG ER GL Sbjct: 528 VHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGL 587 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191 NE++A ++A+I +P+NP F SLN++QAV++M +E + + + + ATKGE Sbjct: 588 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGE 647 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + R Sbjct: 648 LDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 707 Query: 252 QSSR 255 + Sbjct: 708 ARGQ 711 >gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 19/259 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +LV+ NIG ARA+ ++L LVNPR D ++A + ++ A V+ + R+ Sbjct: 15 RFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQNARI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++EA+ +F A +AR R V++P+E A L+ +G N ++FG ER+GL Sbjct: 75 VGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRD--TGLNAALLFGNERFGLP 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP------- 186 NE + NA+++ P NP + SLN+SQAV ++ +EC + ++ Sbjct: 133 NEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPGEVG 192 Query: 187 -----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 A+ E+ +LE +L + P + KK++ L +F R +L EEV +LRG Sbjct: 193 FHGQSASVAEIEGMFAHLEQALVAIDFLNP-DNPKKLMPRLKRMFSRAQLETEEVNILRG 251 Query: 242 IVSTLD--KFSRQSSRRNN 258 I + K ++ R N Sbjct: 252 IARQILEPKQAKAGRREQN 270 >gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223] Length = 244 Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P++ L V ++FGRER GLTN+E Sbjct: 67 LEAAVADCRLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S+ +++ EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINMLRGILTSMQK 238 >gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101] Length = 257 Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 142/245 (57%), Gaps = 1/245 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + K P +LV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ A + ++ A ++D Sbjct: 13 ENPKIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSAVAMASGAGRLLD 72 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V +L A+ D F++ATTAR R+ K V +P+ A E I GQ V ++FG ER Sbjct: 73 EAVVHDDLAGALGDAAFVFATTARERDLTKQVYSPEAAMAKAAELIAQGQRVAVMFGPER 132 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PAT 188 GL N++IA +NAI+S PVNP F SLN++Q VLLM +E M + V+ T A Sbjct: 133 AGLENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMRAQGAVVPEQVEMAGTNWAD 192 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ + E LE G+F P K M +L +++ R L R +V +L G + + + Sbjct: 193 NSEVEHLARHFEERLEVAGFFYPEHKATSMKVNLRNMWSRLPLTRADVQMLHGTLRQMVR 252 Query: 249 FSRQS 253 + + Sbjct: 253 WKERG 257 >gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB] Length = 254 Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 7/238 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++L P NIG ARAM L+ L LV P+ +P +A + + A V+ V Sbjct: 10 IRVVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQ-FPDPEADTRATGAVDVLARATVT 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +LKEA+A F A +AR R+ + AP+E L +G +V ++FG E GLTN Sbjct: 69 GSLKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGLTN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-----ATK 189 EEI A ++ P NP F SLN+ AV ++ +EC + + V+ TP AT Sbjct: 129 EEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECRMAAFLEKPPVVEPGVTPFASPVATH 188 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E+ +LE + + G++ P E+ ++ L +F R L ++E+ +LRGI+++ Sbjct: 189 DEIEGLYGHLETIMTDSGFYNP-EQPGRLFPKLRRLFGRVRLEKDEINILRGILASTQ 245 >gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2] Length = 253 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 2/245 (0%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 + ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ V+ +L AIAD Sbjct: 1 MPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIAD 60 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L+F+YATTAR R+ FK V + EA L R +G+ GI+FGRER+GL+NEE+ L++ + Sbjct: 61 LNFVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADEL 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGELLSFLDYLEI 201 ++FPVNP F SLNI+QAVLLM +E M++ + + V + A K EL F ++LE Sbjct: 121 VTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPKEELHGFFNHLEE 180 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261 +L+ RGYFRP +K+ M+++L ++ R E+ LLRG+V++LD F+ + R + Sbjct: 181 ALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVFTPKKPRGSGAPE 240 Query: 262 QKTEK 266 + K Sbjct: 241 GRARK 245 >gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1] Length = 399 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 169/250 (67%), Gaps = 2/250 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+ A+ ++A AD +ID V Sbjct: 13 IAGPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHV 72 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R+F+ L EAIADL ++ATTAR+ + K V+ P+ AA + +I +G GI+FGRER G Sbjct: 73 RLFATLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIAAGGRAGILFGRERSG 132 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190 LTNEE+A +N II++PVNP F SLN++QAVLLM +E + + + E++ AT+ Sbjct: 133 LTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTFGALPFTMPERSERATQE 192 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L +F + L L+ + RP EK++ ML +L +IF R E ++++ L G+V + + Sbjct: 193 QLEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDIHTLHGVVMAIAE-G 251 Query: 251 RQSSRRNNVL 260 R+ + VL Sbjct: 252 RKGPAKGGVL 261 >gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp. NAS-14.1] gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter sp. EE-36] Length = 250 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 1/240 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +LV PQ+GENIG ARAMWNF L ++R+V PRDGWP+ A + ++ A ++D ++ Sbjct: 11 PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ D F++ATTAR+R+ K V +P+ A + I G+ V ++FG ER GL N Sbjct: 71 DDLAGAVGDAAFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLEN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193 ++I+ +NAI+S PVNP F SLN++Q VLLM +E M + V+ T A E+ Sbjct: 131 DDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMRAQGDVVAEQVEMAGTDWADNSEIE 190 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + E L+ G+F P K M +L +++ R L R +V L G + + ++ + Sbjct: 191 HLARHFEDRLDTAGFFYPEHKAASMKINLRNMWSRLPLTRADVQTLHGTLRQMVRWKERG 250 >gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 242 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae BGR1] Length = 284 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 14/266 (5%) Query: 2 TPYAPQLQNSAKGPV--------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-- 51 P AP +S P +LV+P N+G ARA+ ++L LV PR Sbjct: 21 PPSAPAGPSSVPPPAAGGFASARFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVAGV 80 Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 +A + ++ AD V+ + R+ L +A+A + + A TAR+R LAP+ AA Sbjct: 81 LADPEAVAMASGADDVLAATRIVPTLADALAGVQWSVALTARSREYGPPRLAPRAAAETA 140 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SG+ + +FG ER GL+NE + +AI P NP + SLN+SQA+ ++ +E Sbjct: 141 RAQLASGE-IAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNLSQAIQVLAYELRVA 199 Query: 172 SIVSSE--KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 + S ++ T A E+ +LE +L + P KK++ L +F R Sbjct: 200 LLSGSPGGRHDGAAGTLARADEIEGMFAHLEAALVALDFLDP-RNPKKLMPRLRRMFSRA 258 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSR 255 L REEV +LRGI + + R Sbjct: 259 GLEREEVNILRGIAKHIVLKTGGGER 284 >gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341] Length = 243 Score = 291 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + ++ Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIVPT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P++ L V ++FGRER GLTN+E Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + + +EQ EL Sbjct: 125 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAFLAMDQNQRQEQRDQEYPRHQELEL 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 185 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 237 >gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 243 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIHN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 243 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Actinobacillus ureae ATCC 25976] Length = 243 Score = 291 bits (745), Expect = 8e-77, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 NS IIL++ L NIG ARAM L+ LRLV+P + E+A++ +A A V+D Sbjct: 2 NSLDQIQIILIETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEQG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLELQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111] Length = 240 Score = 291 bits (745), Expect = 8e-77, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 7/238 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+P NIG ARAM ++L LV P + +P E+A + +A AD V+ S R Sbjct: 3 QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L A+ + ++ T+AR+R + +E A + + N+ I+FGRER GL Sbjct: 62 VVDDLTAALEGCNLVFGTSARSRTLPWLLKTARECAE---QSVQHQGNIAIVFGRERSGL 118 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190 TNEE+A ++ P F SLN++QAV ++ +E + V AT Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F +LE +L + + P + K ++ L +F R ++ E+ +LRGI++++ + Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235 >gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1] gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1] Length = 254 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 13/253 (5%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N I++V N+G ARAM + LRLV P D + KA + ++ A ++ Sbjct: 2 NDLDRISIVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLL 61 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + R F L+EA+AD ++ +AR R ++ P A ++ + G V ++FGRE Sbjct: 62 AARQFDTLEEALADCSLVFGASARKRTIPWPLITPPVMADLVLKEPVEG-RVAVLFGRED 120 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----- 184 GLTNEE++L + ++ P + + LN+SQA+ ++ ++ ++ + + + Sbjct: 121 NGLTNEELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQLRQSLVERPKGEEAALDTGSFG 180 Query: 185 ------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 PAT E+ F +LE +L + E +++ + +F R EV + Sbjct: 181 LREWDAPPATGEEMERFFRHLEETLVALEFL-KHENPGQLMTRMRRMFGRIRPDHMEVNV 239 Query: 239 LRGIVSTLDKFSR 251 LRG+++ + K R Sbjct: 240 LRGVLTAMQKKLR 252 >gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603] Length = 244 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + ++F Sbjct: 8 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P + L V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLDWPMLEPPQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S+ +++ EL Sbjct: 126 LQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F ++LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus parainfluenzae ATCC 33392] Length = 239 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 12/240 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG ARAM L+ L LV+P+ E++ + +A AD V+ + Sbjct: 2 LQNIRIVLVETSHSGNIGSAARAMKTMGLSNLYLVSPKSV--DEQSIALAAGADDVMRNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++AI D + T+AR R+ +++ P++ A + V I+FGRER G Sbjct: 60 HIVDTFEQAIEDCSLVIGTSARLRHLQSTLIDPRKCAEKASAHQGQ---VAIVFGRERVG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPAT 188 LTNEE+ + ++ P NP + SLN++ AV L+ +E + + ++ T Sbjct: 117 LTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKDKTENALSMIEDIYPT 176 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F + E G+ + + ++ L ++ R L + E+ +LRG++S ++K Sbjct: 177 AQEMEYFFAHTEQVYLSLGFI----QNQGVMQKLRRLYNRSSLEKNELNILRGMLSAVEK 232 >gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 289 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 103/253 (40%), Positives = 159/253 (62%), Gaps = 1/253 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A GPV+ILV+PQLGEN+G ARAM NF L++LR+VNPR+GWP+EKAR A AD ++D Sbjct: 14 AGGPVVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDA 73 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++F +L+ A+AD+ + ATTAR R K V A R+ +G++V ++FGRER G Sbjct: 74 QLFPDLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKG 190 L EE++L ++I++ PVNP F SLN++ AV + +E + + ++ V E++ PA + Sbjct: 134 LYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSKAATGNALPFVMPERSPPADRV 193 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L +F D+LE LEE +FR EK ++ +IF R EL ++++ L G+++ L + Sbjct: 194 DLFAFFDHLERELEEAAFFRSPEKAPSTTRNIRNIFHRCELTKQDLATLHGMITALVEGR 253 Query: 251 RQSSRRNNVLLQK 263 +R K Sbjct: 254 EGREQRKAERNAK 266 >gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas palustris BisA53] Length = 397 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 110/251 (43%), Positives = 169/251 (67%), Gaps = 2/251 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ S+A AD ++D+ Sbjct: 14 DLNGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILDA 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +F ++++A+ D ++A+TAR + K V+AP+ AA + I G NVGI+FGRER+ Sbjct: 74 AVLFDSVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRERY 133 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL N+E+AL+N II+FPVNP F SLN++QAVLL+ +E +++ ++ + E++ A++ Sbjct: 134 GLENQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKHATQNALPFAMPERSERASQ 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G V + + Sbjct: 194 HQMQAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGAVMAIAE- 252 Query: 250 SRQSSRRNNVL 260 R+ + VL Sbjct: 253 GRKGPAKGGVL 263 >gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM 2581] Length = 247 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L+ NIG ARAM N L L LV PR + S ++ AD ++ + Sbjct: 2 LERIRIVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERW 130 R NL++A+ D + +AR+RN ++ P+E L E V ++FGRE Sbjct: 62 RTVDNLEDAVGDCTLVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDS 121 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATK 189 GLTN E+ +A + P NP F SLN++ AV ++ +EC S + + P A+ Sbjct: 122 GLTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLACQAESPEMQEPDAAPLASH 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL + +LE +L + G+ P + ++++ L +R R E+ +LRGI+S + Sbjct: 182 EELEHYFAHLERTLIDIGFHDP-DMPRQLMARLRRFTLRAHPERMELNILRGILSATQRQ 240 Query: 250 SRQS 253 Sbjct: 241 VEHR 244 >gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 238 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 9/243 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ NIG ARAM L QL LV P+ E A + SA A+ V+ Sbjct: 2 LENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQ-PLDEHAIALSAGAEDVLKQA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ ++ EA+AD + T+AR R+ S++ P+E V I+FGRER G Sbjct: 61 KIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTRAIAYAKQ-APVAIVFGRERIG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---SEKNVKEQNTPAT 188 LTNEE+ ++ P NP + SLN++ AV L+ +E + +E NT T Sbjct: 120 LTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPT 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F + E G+ + + ++ L ++ R +L + E+ +LRG+++ ++K Sbjct: 180 HTEIEHFFQHTERLYTALGFI----QNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEK 235 Query: 249 FSR 251 + Sbjct: 236 RLK 238 >gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas mediterranea MMB-1] Length = 252 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 4/252 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L++ N+G +ARAM N L+ L LV+P D +PS++A S +A A ++++ Sbjct: 2 LSNIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSDEATSRAAGAVDLLENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + S L+EAI+D + T+AR+R ++ +E A + +V I+FGRE G Sbjct: 61 TIVSTLEEAISDCSLVIGTSARHRTFQLPIMNARECAETVIPEAKQ-HDVAIVFGRETTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEEIA + + N +P LNISQAV ++ +E + + KE K E Sbjct: 120 LLNEEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMAN-QDQSIHAKETAEYPRKKE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F ++LE +L + K+L+ L F R ++E+ +LRG+++ + + + Sbjct: 179 MDLFHEHLEETLYGLNFIIKNH-PGKVLEKLQRFFNRSRPEKQELGILRGVLAAVQREAN 237 Query: 252 QSSRRNNVLLQK 263 + N + Sbjct: 238 LTPSTKNSDAKD 249 >gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238] Length = 245 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 1/242 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A P I+L+ PQ+GEN+G ARAMWNF L ++R+V PRDGWP+ A + ++ A + Sbjct: 1 MPTDAPQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRI 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D V +++ + IAD ++YATTAR R K V +P+ A RI G+ V ++FG Sbjct: 61 LDEAEVSTDVADGIADRTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGP 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186 ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E V + P Sbjct: 121 ERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRRAVGEVVDVVVQGQTVEP 180 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + ++ + + E L++ G+F P K M +L +++ R + R +V +L G++ L Sbjct: 181 ADQRDIEALARHYEDRLDDAGFFYPDHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 240 Query: 247 DK 248 + Sbjct: 241 LR 242 >gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 267 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 139/242 (57%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV+IL Q+ ENIG VAR M NF L +LRLV+PRDGWP ++A ++ AD V+D Sbjct: 3 DLTPPVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDG 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+VF ++ A ADL ++ATTAR R + V P++A+ VL + SG VG++FG ER Sbjct: 63 VQVFDSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERA 122 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL +IAL I++ P++P SLN++QAV + +E + + N +E PA+ Sbjct: 123 GLETSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWRTLVLDAPPPNFREGEPPASGA 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + ++LE L+ G+F P EK + M +L + R +EV RG++ L K Sbjct: 183 LAVGMYEHLERELDAAGFFHPPEKFRSMSQNLRVMLGRAAFTEQEVATFRGVIHALSKGR 242 Query: 251 RQ 252 + Sbjct: 243 GR 244 >gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1001] Length = 277 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 20/273 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60 P L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ S + L +A++ +H+ A TAR R P+ AA + + G+ Sbjct: 70 ASGADDVLASAHIVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---- 176 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + S Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAKAN 188 Query: 177 ---------EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + A E+ S +LE +L + P KK++ L +F Sbjct: 189 APANPAPQAAAPAEPSGPRAASDEIESMFSHLERALVALEFLDPA-NPKKLMSRLRRLFA 247 Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260 R L REEV ++RGI + ++ R+++ Sbjct: 248 RSGLEREEVNIVRGIAKHI---LLKTGRKDDGA 277 >gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria IOP40-10] Length = 273 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 16/260 (6%) Query: 1 MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E Sbjct: 125 QACTQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183 Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + + E T A E+ +LE +L + P KK++ L +F Sbjct: 184 VAFLEQGSELREAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 243 ARTGLEREEVNILRGIAKHI 262 >gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32] Length = 251 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 6/250 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ I+LV Q NIGMV RAM N L LRLVNP +A + +A V+D Sbjct: 8 QTSTAISIVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNP-CQVDHPEAHKFAVSARDVLD 66 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R+F++L++A+ D ATT R+ + + P+E A + + V ++FGRE Sbjct: 67 GARLFTSLEDALRDCEISVATTRRHGKYRQEISTPQEIAERVRSQAA-MHRVALVFGRED 125 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLT EE+AL + P + SLN++QAVL+ +E + VS ++ + A Sbjct: 126 SGLTTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQEVSPAQDTR---LLADS 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + + +E +L + G+ P E ++ L I+ R EL EV +LRG++S +D Sbjct: 183 AAMEAMYRQMEKTLLKIGFLNP-ENPAHIMRTLRRIYSRAELDEREVAVLRGMMSQIDWG 241 Query: 250 SRQSSRRNNV 259 + R + Sbjct: 242 TGGFKGRKGI 251 >gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383] Length = 289 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 11/253 (4%) Query: 3 PYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57 P A Q + G +LV+P N+G ARA+ ++L LV PR +A Sbjct: 28 PGAASSQPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEA 87 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA ++ + Sbjct: 88 IAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAATQACAQVGT 147 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSI 173 G ++ ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E E++ Sbjct: 148 G-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEHAS 206 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 S + E T A E+ +LE +L + P KK++ L +F R L R Sbjct: 207 EPSAQPSGEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLER 265 Query: 234 EEVFLLRGIVSTL 246 EEV +LRG+ + Sbjct: 266 EEVNILRGVAKHI 278 >gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1] Length = 239 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + IILV+ NIG ARAM L+ L LV+P+ E++ + +A AD ++ + Sbjct: 2 LQNIRIILVETSHSGNIGSAARAMKTMGLSNLYLVSPKSV--DEQSIALAAGADDLVRNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + ++AI D + T+AR R+ +++ P+E A V I+FGRER G Sbjct: 60 QIVDSFEQAIEDCSLVIGTSARLRHLQSTLIEPRECAEKACAYQGQ---VAIVFGRERVG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPAT 188 LTNEE+ + ++ P NP + SLN++ AV L+ +E + +N T Sbjct: 117 LTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKERTESTLSTIENIYPT 176 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F + E + G+ + + ++ L ++ R L + E+ +LRG++S ++K Sbjct: 177 AQEMEYFFAHTEQVYQSLGFI----QNQGVIQKLRRLYNRSSLEKNELNILRGMLSAVEK 232 >gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2] Length = 270 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 97/252 (38%), Positives = 144/252 (57%), Gaps = 1/252 (0%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y +Q+ P ILV PQ+GENIG ARAM NF L +LR+V PRDGWP+ KA + ++ Sbjct: 18 YLAAMQDPQASPAFILVRPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAVAMASG 77 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + +++ AIAD +++ATTARNR K V+ P+ A I +G+ VG+ Sbjct: 78 AGRLLDFAGPYPDVQAAIADCDYVFATTARNRELTKPVMTPERAMEHARALIAAGKRVGV 137 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FG ER GL N ++ L+NAI+S PVNP FPSLN+ Q VLL+ +E + + + Sbjct: 138 LFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQTACVPPEVMAMA 197 Query: 184 NTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 T A+ E+ D+ E LE G+F P K M L +++ R L R +V L G+ Sbjct: 198 GTDFASGIEVEKLGDHFEDRLEAAGFFFPATKAAGMKLVLRNMWSRLHLTRADVQSLHGM 257 Query: 243 VSTLDKFSRQSS 254 + + + + Sbjct: 258 LRQIARHLPKDG 269 >gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 290 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 11/255 (4%) Query: 1 MTPYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEK 56 ++ AP S +LV+P N+G ARA+ ++L LV PR + Sbjct: 27 VSDAAPSRSPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPE 86 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A + ++ AD V+ S V L EA++ +H+ A TAR R LAP+ AA ++ Sbjct: 87 AIAMASGADDVLASAHVVPTLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACAQVG 146 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----EN 171 +G ++ ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E + Sbjct: 147 TG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQQ 205 Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 + + + E T A E+ +LE +L + P KK++ L +F R L Sbjct: 206 ASDAQQPPAGEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGL 264 Query: 232 MREEVFLLRGIVSTL 246 REEV +LRGI + Sbjct: 265 EREEVNILRGIAKHV 279 >gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1] Length = 244 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 145/240 (60%), Gaps = 2/240 (0%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 PQL ENIG ARAM N LT LRLV PR W S++A ++++ AD V+ ++F EA Sbjct: 2 RPQLSENIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEA 61 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +ADL+ ++ATTARNR K V PK AA+ + GQ G++FG ER GL N+++AL+ Sbjct: 62 VADLNRVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALA 121 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDY 198 + +++ P+NP + SLN++Q VLL+ +E + + + K PATK +L F D+ Sbjct: 122 DTVVTVPLNPDYSSLNLAQCVLLVAYEWYQAAAPTLPERHMTKGAEPPATKEKLQHFFDH 181 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 LE L+E G+ R +K+ M+ ++ ++F R L +EV L GIV L + + + +N Sbjct: 182 LERELDECGFLRIADKRPVMVRNIRNLFQRAHLTGQEVQTLHGIVHELVTYRHRKGKSHN 241 >gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S] Length = 350 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 4/239 (1%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + +A PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V Sbjct: 110 MIETAPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVV 169 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D VF L +A+AD +YATT R R K V+ P+EAA ++ +FG Sbjct: 170 LDKAEVFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAAT---GRSAYVFGP 226 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER GL E++AL+ I++ P+NP F SLN++QAV+L +E + + + + V + PA Sbjct: 227 ERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLE-QPTVVDLGEPA 285 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + EL + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 286 PQAELEGMIGQFETLLESAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 344 >gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter aphrophilus NJ8700] Length = 244 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 9/240 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K I+L++ NIG ARAM LT L LV P+ G ++A + +A A+ ++ S Sbjct: 2 LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQGV-DDQAIALAAGAEDLVKSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V N +A+AD + T+AR R+ S++ P+E +G V I+FGRER G Sbjct: 61 VVVENFLQAVADCSLVIGTSARLRHLQNSLIEPRECGTKTVAHAMNG-KVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188 LTNEE+ + ++ P NP + SLN++ AV L+ +E + ++ + + + Sbjct: 120 LTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAATAEVTSTPANVDIYPS 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F + E + G+ + + ++ L ++ R EL + E+ +L G++S ++K Sbjct: 180 MQELEYFYHHTEQLYQSLGFI----QNQGVMQKLRRLYGRAELEKTELNILLGMLSAVEK 235 >gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80] Length = 244 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + + ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E++++ +A A V+D Sbjct: 2 NILGRIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQSQALAAGAKDVLD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct] Length = 282 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 7/246 (2%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A Sbjct: 26 EMNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATE 84 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIF 125 V+++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+F Sbjct: 85 VVNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILF 144 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQN 184 GRER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S K V E N Sbjct: 145 GRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYN 204 Query: 185 TP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 205 HLHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRG 263 Query: 242 IVSTLD 247 +++L+ Sbjct: 264 FLTSLE 269 >gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400] Length = 278 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 19/272 (6%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ V L +A++ +H+ A TAR R P+ AA + ++ G+ Sbjct: 70 ASGADDVLACAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + + Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATA 188 Query: 179 -----------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + A E+ S +LE +L + P KK++ L +F Sbjct: 189 TAHAAPRAAAGPGEPAGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 247 Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259 R L REEV ++RGI + + R + Sbjct: 248 RSGLEREEVNIVRGIAKHI--LLKTGPRGGDA 277 >gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 266 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 3/246 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 PV+ILV PQ+ ENIG ARAM N L +R+V PRDGWP E+A S++ AD +++S + Sbjct: 15 NSPVVILVRPQMAENIGTTARAMANGGLFHMRIVAPRDGWPQERAWRSASGADRILESAQ 74 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF + +A+ADLH ++AT R R+ K VL + A L E G VG++FG ER GL Sbjct: 75 VFDTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMFGPERAGL 134 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191 NE++A ++A+I +P+NP F SLN++QAV++M +E + + + + AT+GE Sbjct: 135 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTEDETPPRALMTNETHVATRGE 194 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--KF 249 L +F+ +L L++ G+ R +K+ M+ +L F+R E+ +E+ L G+V+ L + Sbjct: 195 LENFMHHLITDLDDCGFLRNEQKRAGMVRNLRHFFLRGEVTEQELRTLHGVVTELSRGRK 254 Query: 250 SRQSSR 255 +RQ++R Sbjct: 255 ARQAAR 260 >gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MC40-6] Length = 273 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%) Query: 1 MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + E T A E+ +LE +L + P KK++ L +F Sbjct: 184 VAFLEQGSGLHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 243 ARTGLEREEVNILRGIAKHI 262 >gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans ATCC 25259] Length = 256 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 7/259 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MT P+L + ++L NIG ARAM L+QL LV+P +P+ +A + Sbjct: 1 MTSSDPKLLADIR---VVLARTSHPGNIGAAARAMKTMGLSQLVLVDP-AVFPNSQADAM 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A V+ RV L EA+AD +AR R+ VL P EAA+ L Sbjct: 57 ASGAVDVLAGARVCPTLTEALADTTLALGVSARRRDIVAEVLNPAEAALRLLGEAQR-AP 115 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FG E GL+NEE++L +++ P NP + SLN++ AV ++ +E + + Sbjct: 116 VALVFGNETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQAWLDRPSWPA 175 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 E + A+ E+ F +LE +L + + P K++ L +F R L +EEV +LR Sbjct: 176 PEIDA-ASGDEVEKFYGHLEAALADLEFLNPGS-PGKLMLKLRRLFARTRLAKEEVNILR 233 Query: 241 GIVSTLDKFSRQSSRRNNV 259 GI+S R + R V Sbjct: 234 GILSAAQDAKRAARRSGTV 252 >gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ G+ R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens GS-15] Length = 248 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +ILV+PQ N+GMV RAM N L +LR+V +A + +A +++ R Sbjct: 7 NNISVILVEPQSPGNVGMVCRAMKNMGLAELRIVK-GCPLDHPEAYKFAVSAKDLLEGAR 65 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF +L+EA+AD ATT R+ + + +P E A + + G ++FGRE GL Sbjct: 66 VFPSLEEALADTELSVATTRRHGKYRQEIYSPGEIAGKIVTNLA-GNRAALVFGREDSGL 124 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T +E++L + P + + SLN++QAVL+ +E + + E T A Sbjct: 125 TTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYELF--AGLGEGTVAGEARTLAGSAAQ 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + +E +L G+ P + ++ + IF R EL EV +LRG+++ +D + Q Sbjct: 183 EALFGQMERTLLRIGFLNP-QNPDHIMRTVRRIFSRAELDDREVAILRGMMTQIDWAADQ 241 Query: 253 SSRRNN 258 + Sbjct: 242 FKGKKG 247 >gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 243 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 101/242 (41%), Positives = 148/242 (61%), Gaps = 4/242 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P IILV PQLGENIG ARAM NF L LRLV PRDGWP+ A +++ AD V+ RVF Sbjct: 6 PAIILVRPQLGENIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+AD +YATT R R K V+ P++AA ++E+ VGI+FG ER GL Sbjct: 66 PTVAEAVADCAHVYATTVRKRGVTKPVMTPEQAAQTIHEQE---GGVGILFGPERAGLET 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +++AL+ II+ PVNP F SLN++QAV+L+ +E + ++ V + PA + EL + Sbjct: 123 DDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSKGQTLAQPTKV-DMEPPAPQEELEA 181 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + +LE L++ GYF P+ + + L ++ +P E+ LRG++STL+K + Sbjct: 182 MIGHLENMLDKNGYFFPIPRIPTIKRTLRTLLTKPSWNSMEIRTLRGVLSTLEKPRHNAH 241 Query: 255 RR 256 + Sbjct: 242 KG 243 >gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121] gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121] Length = 247 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L++ N+G +ARAM N L+ L LV+P D +PSE+A S +A A ++++ Sbjct: 2 LSNIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSEEATSRAAGAVDLLENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +EAIAD + T+AR+R ++ +E A + Q + I+FGRE+ G Sbjct: 61 TIVETFEEAIADCSLVVGTSARHRTFQLPIMNARECAESAV-IEATNQPIAIVFGREKTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L N+EIA + + N +P LNISQAV ++ +E S S E KG+ Sbjct: 120 LLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMASQNKSANTDVEVAEYPRKGD 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F +LE +L + + K+L+ L F R + E+ +LRG+++ + + + Sbjct: 180 MDLFHTHLEETLYDINFVIKNH-PGKVLEKLQRFFNRSRPEKSELGILRGVLAAVQRETE 238 Query: 252 QS 253 ++ Sbjct: 239 KA 240 >gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phytofirmans PsJN] Length = 353 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 17/259 (6%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 86 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 145 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ S V L +A++ +H+ A TAR R P+ AA + E+ G+ Sbjct: 146 ASGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE- 204 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + + Sbjct: 205 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTMYLSAGSGAA 264 Query: 181 -------------KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + A E+ S +LE +L + P KK++ L +F Sbjct: 265 AAQTAPQAAAGEGEAVGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 323 Query: 228 RPELMREEVFLLRGIVSTL 246 R L REEV ++RGI + Sbjct: 324 RSGLEREEVNIVRGIAKHI 342 >gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter tundripaludum SV96] Length = 246 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 11/247 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG VARAM N + L LV P+ +PS A S ++ AD V+ V + Sbjct: 7 IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPK-IFPSADATSRASGADDVLAGATVCAT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EAIAD + +AR R + P+E A + G V I+FGRE GL N E Sbjct: 66 LQEAIADCQVVIGASARGRTISWPEMTPRECAEKVL-INEPGNKVAIVFGRENSGLKNHE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPATKGEL 192 + L + ++ P N + SLNI+ A ++ +E S ++ ++ + K ++ AT ++ Sbjct: 125 LDLCHFLLRIPCNSEYSSLNIAAAAQVVCYELFVASGLAEQEQIVVGDKGEDPLATATQM 184 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 SF +L +L + G+ P K K ++ L I+ R ++ +E+ +LRGI+ + S+ Sbjct: 185 ESFYTHLAEALTDIGFMHPA-KSKSIMRRLRRIYNRVQMDTKELDILRGIL----RMSQG 239 Query: 253 SSRRNNV 259 R N+V Sbjct: 240 HKRNNDV 246 >gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1] Length = 260 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 4/237 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L++ N+G +ARAM N LT L LV+P D +PSE+A S +A A ++++ Sbjct: 2 LSNIRIVLINTFHPGNVGAIARAMKNMGLTNLYLVDPND-YPSEEATSRAAGAVDLLENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + S L+EAIAD + T+AR+R ++ +E A + NV I+FGRE G Sbjct: 61 TIVSTLEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAVD-HNVAIVFGRETTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L N+EIA + + N +P LNISQAV ++ +E + + E KE K + Sbjct: 120 LLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIWMAN-QNKENYKKETPEYPHKKD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F ++LE +L + K+LD L+ F R ++E+ +LRG+++ + + Sbjct: 179 MDLFYEHLEETLYGINFII-RSHPGKVLDKLHRFFNRSRPEKQELGILRGVLAAVQR 234 >gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] Length = 244 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + + ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRVFTRARPEAQEINILRGILTSVQK 238 >gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +EV +LRGI++++ K Sbjct: 186 FYAHLEQVIIQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEVNILRGILTSVQK 238 >gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria MEX-5] Length = 273 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%) Query: 1 MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 HVQDDPDAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGTG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + + E T A E+ +LE +L + P KK++ L +F Sbjct: 184 VAFLEQGSELHQAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 243 ARTGLEREEVNILRGIAKHI 262 >gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L] Length = 288 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 15/275 (5%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P G I+LV+P N+G VAR M N L+QL LVNP+ S+ A+ + + Sbjct: 18 EQPSTLKMYMGVRIVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVH 77 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +++ +V + + + + ATTAR+R ++ P+ A L + +G + Sbjct: 78 GVDILEKAQVVATIPDGLVGCQRAIATTARSRAIPTTLEHPRTALPWL---LSAGVTSAL 134 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----- 178 IFG E GL+N+E+ + + P + +P LN++QAV + +E + + S Sbjct: 135 IFGPESRGLSNDELNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQYQLYQSTHQPSPV 194 Query: 179 ------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232 A + + ++LE L + GY P K + ++ L + R Sbjct: 195 PSQPLSPAPPYQDSAPLDLIERYSNHLEALLLKIGYLYPHTKAAR-MEKLRRLLNRATPT 253 Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 EE+ +LRG+V ++ + + K +S Sbjct: 254 TEEINMLRGMVRQVEWALQFLPKSGVDDPSKPNQS 288 >gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 249 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 7/249 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFDNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEAIALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 + + R+ NL+EA+ D+ ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VKNARIVPNLQEALDDIDYVVGTSARVRRVSLPIEPISKVATNILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + ++ S+ K V E Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQTVEISDLKEVPEYTH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMLQSGFLDK-DKPGHVMDKMRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLDKFSR 251 +++LD + Sbjct: 239 LTSLDNKGK 247 >gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7424] Length = 253 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q + IILV+P N+G VAR M N L +L LVNPR S++A+ + + ++ Sbjct: 3 QTPLEEIKIILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDIL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++ ++L +A+ ATT+R R + P++A L + SG +IFG E Sbjct: 63 EQLQLVNSLPQALTGCQRAIATTSRMRTLPTVLETPRDALPWLLD---SGVKGALIFGPE 119 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL+NEE+ + + P NP +PSLN++QAV + V+E + ++ K K ++ A+ Sbjct: 120 DRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKR-KSEDESAS 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L + LE L + GY P + ++ ++ + L REE+ +LRGI+ ++ Sbjct: 179 LEDLERYYQDLETLLLKIGYLYPHTASAR-MEKFRRMYYKANLNREELAMLRGILRQMNW 237 Query: 249 FSRQSSR 255 + ++ Sbjct: 238 AMQHLAK 244 >gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21] Length = 244 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPESQEINILRGILTSVQK 238 >gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu] Length = 269 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 126/257 (49%), Gaps = 7/257 (2%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60 P P L+ +LV+P N+G ARA+ ++L LV PR +A + Sbjct: 14 PSGP-LRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAM 72 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA ++ +G + Sbjct: 73 ASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACAQVGTG-D 131 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEK 178 + ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E + S+ Sbjct: 132 IALVFGNERTGLANEHVDQCSALAHIPANPAYSSLNLAQAVQVLAYELRIAFLEHASASL 191 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 E T A E+ +LE +L + P KK++ L +F R L REEV + Sbjct: 192 PRPEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNI 250 Query: 239 LRGIVSTLDKFSRQSSR 255 LRGI + SR R Sbjct: 251 LRGIAKHILLKSRTPDR 267 >gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708] Length = 245 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 7/244 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I+LV+P N+G +AR M NF L L LVNP+ S A + +A +++S + Sbjct: 5 GIRIVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILESAVI 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L EA+ + AT R+ + + +P+ + L E + V +IFGRE GL+ Sbjct: 65 FPTLPEALQGCVRVIATIGRDYSGHIPLESPRTSLPWLLEETE--KPVALIFGREDRGLS 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATK 189 NEE+ ++ +I P NP +PSLN++ AV + +E + + K P A Sbjct: 123 NEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAKIFTTPKPPTTEMAPV 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L + LE L GY P + ++ ++ R + EV +LRGI+ ++ Sbjct: 183 DMLEPYYQELESLLLFIGYLYPHTAASR-MEKFRHLYNRAHIQTTEVAMLRGILRQIEWA 241 Query: 250 SRQS 253 R S Sbjct: 242 IRNS 245 >gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM RHODOBACTER Sphaeroides Length = 249 Score = 287 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 1/239 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV PQ GENIG ARA NF L +LR+V+PRDGWP+ KA + ++ A ++D +F Sbjct: 5 PVFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EAI D +++ATTAR R K V P+ A G+ VGI+FG ER GL N Sbjct: 65 PTVAEAIRDCDYVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTGLEN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 E++AL+NAI++ PVNP F SLN++Q VLL+ +E + + + A+ E+ Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDXARVDFASGLEVE 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D+ E LE G+F P EK +L + + R L R +V L G + + +Q Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGXKLNLRNXWARLPLTRADVQTLHGXLRQIAWKLKQ 243 >gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] Length = 244 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPETQEINILRGILTSVQK 238 >gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 351 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 139/238 (58%), Gaps = 4/238 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++ PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A S+A AD V+ Sbjct: 112 EPASPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVL 171 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D VF L +A+AD +YATT R R K V+ P+EAA ++ +FG E Sbjct: 172 DKAEVFETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAAA---GRSAYVFGPE 228 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GL E++AL+ I++ P+NP F SLN++QAV+L +E + + + + V + PA Sbjct: 229 RSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLE-QPTVVDLGEPAP 287 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + EL + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 288 QAELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 345 >gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella tularensis subsp. tularensis WY96-3418] gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] Length = 247 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S K V E N Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis HTCC2503] Length = 293 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 150/251 (59%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P++ILV PQLG+NIG ARAM NF L LRLV PRDGWP+ A++ +A A V+D VRV Sbjct: 38 HPLVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRV 97 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD H++ ATTAR+R F V P + A L R + I+FG E+ GL Sbjct: 98 FGTVAEAVADCHYVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAGLE 157 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 EE+A ++A+++ PVNP FPSLN++QAVL++ +E + + + Q PAT+ E Sbjct: 158 TEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQAAGAAPLFTSPYQEDPATQAERE 217 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +L +L+ GYF P K++ + +L ++ +L E+ +L G+V ++ + Sbjct: 218 QLFTHLSTALDRAGYFYPSHKREVLSHNLRTLLANADLSPSELRVLHGVVRQFERHLPEK 277 Query: 254 SRRNNVLLQKT 264 S+ + + Q+ Sbjct: 278 SQTDKSVPQEE 288 >gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus denitrificans PD1222] Length = 246 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 4/238 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73 P IIL+ PQ+GENIG ARAM NF LT +RLV PRDGWP+ +A + ++ A V+D RV Sbjct: 7 PAIILMRPQMGENIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARV 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ L EA+AD+ + YATTAR R K VL P A +R+ G V +IFG ER GL Sbjct: 67 FATLAEAMADVDYAYATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLE 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATKG 190 NE++A +NAII+ PVNP FPSLN++QAVLL +E ++S+ + PAT+ Sbjct: 127 NEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQDSLPPQPAPHGRRPDGEAPATRL 186 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ D+ E L E G+F P EK M L +++ R L R + + G++ L + Sbjct: 187 EIEKLADHWEERLAEAGFFFPPEKAPAMKLTLRNLWSRLPLTRADTRIFHGMLRQLIR 244 >gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 238 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 8/241 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ Sbjct: 4 LNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNA 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ EAIAD + T+AR R+ +++ P++ ++ R G V I+FGRER G Sbjct: 63 QCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRANLG-KVAIVFGRERVG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 LTNEE+ ++FP NP + SLN++ AV L +E + +S + + T Sbjct: 122 LTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTA 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K Sbjct: 182 QALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKA 237 Query: 250 S 250 + Sbjct: 238 N 238 >gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891] Length = 241 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L LV+P+ E+ + +A A + ++ Sbjct: 2 LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQTLALAAGAADIAENA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V L EA+AD + ++AR+R +L P+E V ++FGRER G Sbjct: 61 TVVDTLTEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVSEGQE-SPVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + + P NP + SLN++ AV + +E + S+ EQ Sbjct: 120 LTNDELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLDNEQSQYQAPEQVEYPRH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE ++ + ++ K+++ L +F R +E+ +LRG+++ ++K Sbjct: 180 KELEMFFAHLEKVAKDTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAVEK 237 >gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 244 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + + + Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLAMQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297] Length = 239 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 4/239 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L+ NIG ARAM N L+ L LV+P D +PS++A S + A +++ Sbjct: 2 LSNIRIVLIRTWHAGNIGATARAMKNMGLSNLVLVDPVD-FPSDEATSRAGQAVDLLEQA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V + L+EAIAD + + T+AR+R+ L + A G V I+FGRER G Sbjct: 61 NVVATLEEAIADCNLVIGTSARDRSIRLPALTAEACAEKACRESDQG-TVAIVFGRERMG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEEI + ++ NP +P LN+SQAV L+ WE + + + + P + E Sbjct: 120 LSNEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFKVASSETPPESDVEPYP-RQRE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L F +L + E G+ P +++D L ++F R R+E+ +LRG +S++D+ + Sbjct: 179 LEQFYQHLAKTSEATGFLNPAH-PGQVMDHLRALFRRARPTRKELSILRGFLSSIDQHT 236 >gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385] gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586] gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 244 Score = 286 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] Length = 258 Score = 286 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKAR 58 ++P P + + +LV+P N+G ARA+ +QL LV PR + +A Sbjct: 3 ISPPIPAPPQAFRAARFVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAI 62 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + ++ AD V+ + R+ + L EA+A + + A TAR+R LAP+ AA ++ G Sbjct: 63 AMASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPRAAAGEARRQL-DG 121 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SS 176 + +FG ER GL+NE + +AI P NP + SLN+SQA+ ++ +E + ++ Sbjct: 122 GEIAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQAA 181 Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 E + T A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 182 EHHDGAAGTLAQADEIEKMFAHLEQALVALEFLDP-RNPKKLMPRLRRLFSRAGLEREEV 240 Query: 237 FLLRGIVSTL 246 +LRG+ + Sbjct: 241 NILRGVAKHI 250 >gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 244 Score = 286 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAKQ-HSVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213] Length = 238 Score = 286 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 8/241 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IILV+ L NIG ARAM LT LRLV P+ E+A + +A A V+D+ Sbjct: 4 LNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNA 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ EAIAD + T+AR R+ +++ P++ ++ R G V I+FGRER G Sbjct: 63 QCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRTNLG-KVAIVFGRERVG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 LTNEE+ ++FP NP + SLN++ AV L +E + +S + + T Sbjct: 122 LTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTA 181 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L F + E E G+ R ++ L ++ R EL E+ LLRG+++ ++K Sbjct: 182 QALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKA 237 Query: 250 S 250 + Sbjct: 238 N 238 >gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)] gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9] gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33] gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286] gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236] gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10] gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101] gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27] gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1] gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93] gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4] Length = 244 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTN+E Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238 >gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus HTCC2654] gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2654] Length = 249 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 143/240 (59%), Gaps = 1/240 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + P +LV PQ+GENIG ARAM NF L ++R+V PRDGWP+ KA + ++ A V+D Sbjct: 6 QTGPQPAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRVLD 65 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + V+ +L A+AD ++YATTAR+R K V P+ A G+ V ++FG ER Sbjct: 66 AAVVYDDLPAALADCDYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFGPER 125 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188 GL NE+++ +NAII+ PVNP F SLN++Q+VLL +E +I ++ + + T AT Sbjct: 126 AGLENEDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQTIDAAPEVMSLAKTDFAT 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E+ + D+ E L+E G+F P K M L + + R L R +V + G++ + + Sbjct: 186 QVEVEALADHFERRLDEVGFFFPETKAAGMKLVLRNAWTRLSLTRADVQMFHGMLRQIFR 245 >gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp. tularensis FSC033] gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. tularensis NE061598] Length = 247 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S K V E N Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans OM5] Length = 391 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 110/257 (42%), Positives = 164/257 (63%), Gaps = 2/257 (0%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A ++A A Sbjct: 6 KTKPRAELPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGA 65 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 D ++ V VF ++ A+AD ++ATTAR + K V+AP+ AA + + G GI+ Sbjct: 66 DHILTQVEVFETVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGIL 125 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQ 183 FGRERWGLTNEE++L+ I++FPVNP F SLN++QAVLLM +E + S ++ E+ Sbjct: 126 FGRERWGLTNEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGEIPFSMPER 185 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + A++ ++ +F L L++ + RP EK+ ML +L +IF R E ++++ L G+V Sbjct: 186 SERASQHQMEAFFTNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPTKQDMHTLHGVV 245 Query: 244 STLDKFSRQSSRRNNVL 260 L + R+ + VL Sbjct: 246 MALAE-GRKGPAKGGVL 261 >gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] Length = 256 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P IILV PQ+GENIG ARAMWNF L ++R+V+PRDGWP+ KA + ++ A V+D+ Sbjct: 14 AGPQPSIILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDN 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V ++ + ++A+AD ++++ATTAR R+ K +++P+ A + + SGQ VGI+FG ER Sbjct: 74 VSIYDDTRDAVADCNYVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERA 133 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATK 189 GL N++I+ +NAIIS PVNP F SLN+ Q VLL+ +E + + + + A Sbjct: 134 GLENDDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRRLANQAPSELFDLSKTRWAEA 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ S D+ E LEE +F P K + +L ++ R L +V L GI+ L + Sbjct: 194 KEVESLQDHFEEKLEEAHFFFPEHKAAHLKKNLRNMLSRLPLTINDVGLFHGILRALTR 252 >gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 258 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 1/244 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 PVIILV PQ+ ENIG ARAM N L +RLV PRDGWP E+A +++ AD +++S Sbjct: 15 NSPVIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGADRILESAT 74 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF + +A+ADLH ++AT R R+ K V+ + A L G G++FG ER GL Sbjct: 75 VFDTVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLFGPERAGL 134 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191 NE++A ++A+I +P+NP F SLN++QAV++M +E + + + + ATKGE Sbjct: 135 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTQDDTPPRELMTNETHVATKGE 194 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + + Sbjct: 195 LDNFMRHLIGDLDECGFLRNEQKRPGMVRNLRHFFERGEVTEQELRTLHGVVTELARGRK 254 Query: 252 QSSR 255 + Sbjct: 255 ARQQ 258 >gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria AMMD] Length = 273 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%) Query: 1 MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 + P AP +A P +LV+P N+G ARA+ ++L LV PR Sbjct: 5 LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64 Query: 52 --WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 +A + ++ AD V+ S V L +A++ +H+ A TAR R LAP+ AA Sbjct: 65 NVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183 Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + E T A E+ +LE +L + P KK++ L +F Sbjct: 184 VAFLERGSELHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 243 ARTGLEREEVNILRGIAKHI 262 >gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter gallaeciensis 2.10] Length = 232 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 1/232 (0%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +GEN+G ARAMWNF L ++R+V PRDGWP+ KA + ++ A ++D R+ +L AI D Sbjct: 1 MGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIED 60 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F++ATTAR R K V +P+ A + E+I +G+ V ++FG ER GL NE+IA +NAI Sbjct: 61 CDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAI 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLSFLDYLEIS 202 IS PVNP F SLN+ Q VLL +E + ++ A+ ++ + +++ E Sbjct: 121 ISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDWASHADVDALVNHYEDR 180 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L++ G+F P +K M ++F R L R +V +L GI+ + ++ + Sbjct: 181 LDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQMVRWKEKRD 232 >gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil 5] Length = 227 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 122/225 (54%), Positives = 162/225 (72%), Gaps = 2/225 (0%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GPVIILV+PQ+GENIGMVARAM NF L LRLVNPRDGWP+EKA+++ Sbjct: 1 MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD VI RV+ L++AIADL+F+YATTAR+R+N+K V +P AA L + G+ Sbjct: 61 ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEA 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ + E Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVP 180 Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223 + + P+TK +L D LE +L+ R YF P KK KM+D+L Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLR 225 >gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp. holarctica LVS] gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp. holarctica 257] gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 247 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G E A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDYE-ALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S K V E N Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 242 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida FTG] Length = 247 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S+ K V E N Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112] gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112] gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis subsp. novicida FTE] Length = 247 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQESDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S+ K V E N Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis JLW8] Length = 247 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 3/236 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QN ++L NIG ARAM L L LVNP +P +A S + A ++ Sbjct: 4 QNIFNNIRVVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPL-HFPDPQATSLATGAADLL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ V S+L+EA+ +AR R ++ +E A + Q + ++FG E Sbjct: 63 ETATVCSSLQEALTGCVLAIGMSARKRQISHELVNVRE-AAHRAASLAQNQPIALVFGTE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL+N E+ + P NP + SLN++ AV +M +E + + + AT Sbjct: 122 MSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIRMAILEGKLEAAENPPELAT 181 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 L F +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++ Sbjct: 182 NEALEGFYGHLEETLVKIGYLNP-TAPKKLSERIRRIYARAKLEKEEVNLLRGILT 236 >gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2] Length = 393 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 111/257 (43%), Positives = 166/257 (64%), Gaps = 2/257 (0%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+ A+ ++A A Sbjct: 6 KTKPRTDLPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAQRAAAGA 65 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 D +++ V +F ++ A+AD ++ATTAR + K V+AP AA + E GI+ Sbjct: 66 DHILERVELFETVEAAVADCALLFATTARAHDQAKPVVAPDAAAREIVEGTAQDITAGIL 125 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQ 183 FGRER GLTNEE+AL+N I++FPVNP F SLN++QAVLLM +E + S ++ E+ Sbjct: 126 FGRERSGLTNEEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGMIPFSMPER 185 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + PA++ ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V Sbjct: 186 SEPASQHQMQAFFDNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPSKQDMHTLHGVV 245 Query: 244 STLDKFSRQSSRRNNVL 260 + + R+ + VL Sbjct: 246 MAIAE-GRKGPAKGGVL 261 >gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-3-3Ab] Length = 269 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 9/259 (3%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q ++LV P N+G +AR M N L Q LV+P+ +A + Sbjct: 1 MPASSNWAQERLAQVRLVLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTM 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSG 118 + +A ++ R L EA+ ++ T R + +P++A L Sbjct: 61 AVHATDLLRQARQVPTLAEALQGCVQVFGTAGRREPYPPEWQIQSPRQAFPELLA----A 116 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++FG E GL+NEE+AL + I P +P +PSLN++QAV + +E + Sbjct: 117 GPAALVFGPEDRGLSNEELALCHRQIQIPTDPAYPSLNLAQAVGICCYELRTLLCQNLPP 176 Query: 179 NVKEQ--NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 V + PA L F +LE L + GY P ++KML L ++F R L+ EV Sbjct: 177 PVTSSGISKPAPFELLEGFFGHLEALLLQIGYLHPHTARRKML-KLRALFHRAGLIVSEV 235 Query: 237 FLLRGIVSTLDKFSRQSSR 255 LLRGI+ L + S R Sbjct: 236 ALLRGILRQLQWSQKSSPR 254 >gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548] Length = 247 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + ++ S+ K V E N Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565] Length = 216 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 3/216 (1%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M LTQL LV+P+ P + A + +A A V+ + R+ L +AIAD + T+AR+ Sbjct: 1 MKTMGLTQLVLVDPQ-ALPDDNAFALAAGASDVLANARIVPTLDDAIADCGLVIGTSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +L P+EA V ++FGRER GLTN+E+ + ++ P NP + S Sbjct: 60 RTLSWPMLDPREAGEKSVVEGMQ-HPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSS 118 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 LN++ AV + +E + +++ + +L F +LE +L + G+ + Sbjct: 119 LNLAMAVQTLCYEVRMRWLQGQAAEPEDEMVYPSAAQLEGFYQHLEQTLMKTGFI-ADDH 177 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ L +F R E+ +LRGI++++ K Sbjct: 178 PGHVMSKLRRLFNRARPEAAELNILRGILTSVQKAH 213 >gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N IILV+ L NIG ARAM L+ LRLV+P + E+A++ +A A V+ Sbjct: 2 NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F + ++AIAD + T+AR R+ S++ P++ + ER G V I+FGRER Sbjct: 61 NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185 GLTNEE+ + ++FP NP + SLN++ AV L +E + + + E+ Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L F ++ E ++ + R ++ L ++ R EL E+ LLRG++++ Sbjct: 180 YPNTEALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235 Query: 246 LDK 248 ++K Sbjct: 236 VEK 238 >gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523] Length = 249 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEAIALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 + + ++ +NL EA+ + ++ T+AR R + + A + +I S + V I+FG Sbjct: 60 VKNAKIVANLVEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKVAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + ++ S+ K V E N Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKIRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLN 243 >gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 430 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 113/254 (44%), Positives = 161/254 (63%), Gaps = 12/254 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +IL++PQL +NIGMVARA NF L LRLVNPRDGWP+EKAR +++ A+ VID R F Sbjct: 172 PSVILMEPQLADNIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASGANYVIDDARPF 231 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+++IADL++I ATTAR R+ K VL P++A RI G+ GI+FGRER GL Sbjct: 232 EKLEDSIADLNWIAATTARQRDMRKPVLTPEQAIAEARARIARGERCGILFGRERNGLET 291 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-------SIVSSEKNVKE----- 182 E+A ++A+I PVN F SLN++QAVLL+ +E M + + + EK + E Sbjct: 292 GEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMRSDAGRSLGRVTTYEKPLNEGLYMG 351 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ PATK EL+ ++LE LE G+F P +K + +L ++ R +EV LRGI Sbjct: 352 RDRPATKEELIGLFEHLERELEANGFFNPAHRKTVVSQNLRTLLTRMNATEQEVRTLRGI 411 Query: 243 VSTLDKFSRQSSRR 256 V+TL + ++ + Sbjct: 412 VATLAQGKGKARKG 425 >gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E] gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E] Length = 244 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV+ NIG ARAM L L LV+P+ G E+A + SA A+ V+ Sbjct: 2 LNNIRLVLVETSHSGNIGSAARAMKTMGLANLYLVSPKQGI-DEQAVALSAGAEDVLRKA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + EA+AD + T+AR R+ +++ P+E + + GQ + I+FGRE++G Sbjct: 61 VIVKSFDEAVADCSLVIGTSARLRHLQSTLIEPRECGKISIQEAHCGQ-IAIVFGREKFG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187 LTN+E+ ++ P NP + SLN++ AV L+ +E + + E Sbjct: 120 LTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVSYELRMAWLNGRQSESMSDSVEIAQKP 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T EL F + E + G+ + + ++ L ++ R L + E+ +LRG++S ++ Sbjct: 180 TALELEYFFAHTEKLYQSLGFI----QNQGVMQKLRHLYNRVNLKKNELNILRGMLSAVE 235 Query: 248 K 248 K Sbjct: 236 K 236 >gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Aggregatibacter segnis ATCC 33393] Length = 255 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 15/260 (5%) Query: 1 MTPYAPQLQNS----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 M YAP L + I+L++ NIG ARAM LT L LV P+ G ++ Sbjct: 1 MVEYAPLLNKIKMIMLENIRIVLIETSHSGNIGSTARAMKTMGLTDLVLVAPKQGV-DDQ 59 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A + +A A+ V+ S V N EA+AD + T+AR R+ S++ P+E Sbjct: 60 AIALAAGAEDVVKSAVVVENFSEAVADCSLVIGTSARLRHLQNSLIEPRECGEKAINHAI 119 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 SG V I+FGRER GLTNEE+ + ++ P NP + SLN++ AV L+ +E + + Sbjct: 120 SG-KVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLATQ 178 Query: 177 EKNVK-----EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 + + + + EL F E + G+ + + ++ L ++ R E+ Sbjct: 179 REENQKMTQTQPDVYPQMQELDYFFTRTEQLYQSLGFI----QNQGVMQKLRRLYSRAEV 234 Query: 232 MREEVFLLRGIVSTLDKFSR 251 + E+ +L G++S ++K + Sbjct: 235 EKTELHILLGMLSAVEKKLK 254 >gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179] Length = 248 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 13/253 (5%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S I+LV+ NIG ARAM L+QL LV+P+ P+E++ + SA AD V+ Sbjct: 2 SLDQIKIVLVETSHPGNIGSAARAMKTMGLSQLYLVSPK-VLPNEESIALSAGADDVVKQ 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + S+ +EAIAD + T+AR R+ + + P++ + R G V I+FGRER Sbjct: 61 AHIVSSFEEAIADCSLVIGTSARARHLTTTAVTPRDCGELAIVRSAHG-KVAIVFGRERI 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTP 186 GLTNEE+ + ++ P NP + SLN++ AV L+ +E + + + + P Sbjct: 120 GLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEVRMAYLQKQQGYQLHHSRVAEMP 179 Query: 187 AT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A EL F E ++ G+ + ++ L +++R + R E+ +L+G++ Sbjct: 180 AEGVVAEELEYFFHKTEQVYQQLGFI----QNSAVMKKLRRLYLRTAIQRNELNILQGML 235 Query: 244 STLDKFSRQSSRR 256 + ++K +S R+ Sbjct: 236 TAVEKVITESHRK 248 >gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 261 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 19/262 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ Sbjct: 2 LENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-SYPSVEATARASGAGDVLEAA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRE 128 +V +++ EA+ + T+AR R L P++ A L+ + ++FGRE Sbjct: 61 QVCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGRE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------- 175 GLTN+E+ N +S P NP + LN++ AV L+ +E + Sbjct: 121 DRGLTNDELRRCNLHVSVPANPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREV 180 Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + PAT + FLD+LE + + G+ P ++ +++ + +F+R + Sbjct: 181 MPLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-QQPGQVMTRMRRLFMRARPDKM 239 Query: 235 EVFLLRGIVSTLDKFSRQSSRR 256 E+ +LRG++ L+K ++ R Sbjct: 240 EMSILRGVLVALEKKMQRDEGR 261 >gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1] Length = 247 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + ++ S K V E N Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKEVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 7/235 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +LV+ NIG ARAM T L LVNPR D ++A + ++ A V+ + R+ Sbjct: 15 RFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDVLANARI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++EA+ D ++ A +AR R V P++ A + V ++ G ER+GL Sbjct: 75 VGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAA--LRVALVLGNERFGLP 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKGE 191 NE + N +I+ P NP + SLN+ QAV ++ +EC ++ V A+ + Sbjct: 133 NEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATEVGFHGDAASLTQ 192 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +LE +L + +P + KK++ L +F R L EEV +LRGI + Sbjct: 193 VEGMYQHLEQALVAIDFLKP-DSPKKLMPRLKRLFARTGLETEEVNILRGIAKQI 246 >gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 244 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 137/248 (55%), Gaps = 5/248 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++L P NIG ARAM L++L LV P+ +PSE+A + ++ A ++++ Sbjct: 1 MQNIRVVLARPNHPGNIGSAARAMKTMGLSRLYLVEPK-VFPSEEANALASGAVDLLENA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +L+EA++D+ A T+R R + P++ L R G+ V ++FG E +G Sbjct: 60 TVVGSLREALSDVTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+ EE+ N +++ P NP + SLN++ AV +M +E ++ V E ++ + AT+ E Sbjct: 120 LSIEEVEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSHTGVDVEY-LRAEGEAATQSE 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +LE +++E GYF+ ++++ + ++F R ++REE+ +LRG + + + Sbjct: 179 VDGMCGHLEQAMDEIGYFQ-RRNSERLMRRMRTMFHRAGMLREEIDILRGFYKQVQRTA- 236 Query: 252 QSSRRNNV 259 S R + Sbjct: 237 -SGRSGDA 243 >gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 ILV+ NIG ARA+ N T+L LVNPR D E+A + ++ A ++ + R+ Sbjct: 15 RFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDILQAARI 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++EA+ D +F A TAR R V++P+ A L E +G ++FG ER+GL Sbjct: 75 VGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEE--TGLRAAVVFGNERFGLP 132 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATKGE 191 NE + N +I+ NP + SLN++QAV ++ +E ++ + ++ Q A+ + Sbjct: 133 NEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATDIGFQGEAASMAQ 192 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +LE +L + KK++ L +F R +L EEV +LRGI + Sbjct: 193 IDGMYAHLEQALVAIDFLD-ANNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 246 >gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein) [Oceanospirillum sp. MED92] Length = 241 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 132/245 (53%), Gaps = 6/245 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++L++ NIG ARAM N L++L LV P + +PSE+A S +A A ++DS Sbjct: 2 LSNVRVVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEE-FPSEEADSRAAGAKDLLDSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V S L+EAI+D + T+AR R +L ++ A + SG+ V ++FGRE Sbjct: 61 IVVSTLEEAISDCQLVIGTSARTKRTFDLPLLNARKGAERVVAEAQSGE-VALVFGRETM 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL N E+ N + P NP +P LN+SQA+ L+ +E ++ + V+E+ Sbjct: 120 GLHNHELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEIFMSAENKTYSEVEEEYPR--HK 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E+ F +++E L + P + + K+L+ L+ F R R E+ +LRGI++++++ Sbjct: 178 EMALFYEHMEKVLRLTNFIIP-QHEGKVLEKLHRFFNRSRPERTELNMLRGILTSVEETV 236 Query: 251 RQSSR 255 + + Sbjct: 237 EKLKK 241 >gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 260 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 19/258 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I++V+ NIG ARAM L+ LRLV P+ +PS +A + ++ A V+++ Sbjct: 2 LENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-AYPSVEATARASGAGDVLEAA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRE 128 +V +++ EA+ + T+AR R L P++ A L+ + ++FGRE Sbjct: 61 QVCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGRE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------- 175 GLTN+E+ N +S P NP + LN++ AV L+ +E + Sbjct: 121 DRGLTNDELRRCNLHVSVPTNPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREV 180 Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + PAT + FLD+LE + + G+ P E+ +++ + +F+R + Sbjct: 181 MPLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-EQPGQVMTRMRRLFMRARPDKM 239 Query: 235 EVFLLRGIVSTLDKFSRQ 252 E+ +LRG++ L+K + Sbjct: 240 EMSILRGVLVALEKKMPR 257 >gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sulfurreducens PCA] gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter sulfurreducens KN400] Length = 255 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV+PQ N+GMV RAM N L +LR+V +A + +A +++ R Sbjct: 14 ERVAIVLVEPQSPGNVGMVCRAMKNMGLGELRIVK-GCRLDHPEALKFAVSARDLLERAR 72 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF +L++A++D ATT R+ + + +PKE + G ++FGRE GL Sbjct: 73 VFESLEDALSDTELSVATTRRHGKYRQEIFSPKEIVSKFAANLA-GNRAALVFGREDNGL 131 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T +E++L + P + + SLN++QAV++ +E + + S E A E Sbjct: 132 TTDELSLCRWHATIPSSEEYGSLNLAQAVMVFCYELFTS--LGSRTVGGEDRPLAGSAET 189 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +++E +L GY P + ++ L IF R EL EV +LRG+++ +D + Q Sbjct: 190 EPLFEHMERTLMRIGYLNP-QNPAHLMRSLRRIFARSELDSREVAILRGMMTQIDWAADQ 248 Query: 253 SSRRNNV 259 + Sbjct: 249 FKGKKGA 255 >gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546] gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546] Length = 241 Score = 284 bits (727), Expect = 9e-75, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 5/239 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV NIG ARAM L+ L LV+P+ E+A + +A A + S Sbjct: 2 LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQAIALAAGAADIAQSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L EA+AD + ++AR+R +L P+E V ++FGRER G Sbjct: 61 TIVNTLSEAVADCALVVGSSARSRTLEWPMLEPRECGEKFVAE-GQNSPVALVFGRERTG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 LTN+E+ + + P NP + SLN++ AV + +E + S+ E+ Sbjct: 120 LTNDELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLQHEQSQYAKPEEAEYPRH 179 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 EL F +LE ++ + E+ K+++ L +F R +E+ +LRG+++ ++K Sbjct: 180 KELELFFTHLEKVAKDTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237 >gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus PAl 5] gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 1/244 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 PV+ILV PQ+ ENIG ARAM N L LRLV PRDGWP E+A S++ AD ++++ Sbjct: 15 NSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAAT 74 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V ++ +AIADLH ++AT R R+ K+VL + A L + G G++FG ER GL Sbjct: 75 VHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGL 134 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191 NE++A ++A+I +P+N F SLN++QAV++M +E + + + + ATKGE Sbjct: 135 DNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGE 194 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +F+ +L L+E G+ R +K+ M+ +L F R E+ +E+ L G+V+ L + R Sbjct: 195 LDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 254 Query: 252 QSSR 255 + Sbjct: 255 ARGQ 258 >gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022] Length = 247 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLLIEPISKVATSILNKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL NEE+ +SN P N + SLN++QAV L+ +E + +I S K V E N Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris BisB5] Length = 397 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 108/254 (42%), Positives = 162/254 (63%), Gaps = 2/254 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+ A+ ++A AD +++ Sbjct: 14 DLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNIAAQRAAAGADDILEQ 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +F ++EA+AD ++ATTAR + K V P+ AA + G GI+FGRER+ Sbjct: 74 AELFDTVREAVADCTLLFATTARAHDQAKPVRGPEAAAQEIVTATAGGATAGILFGRERY 133 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL NEE+AL+N I++FPVNP F SLN++QAVLLM +E +++ + + E++ PA++ Sbjct: 134 GLQNEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQGALPFAMPERSEPASQ 193 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L+ + RP EK+ ML +L +IF R E ++++ L G V + + Sbjct: 194 HQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGAVMAIAE- 252 Query: 250 SRQSSRRNNVLLQK 263 R+ + VL + Sbjct: 253 GRKGPAKGGVLDGE 266 >gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 241 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 11/245 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K I+L++ NIG ARAM LT L LV P+ ++A + +A A+ V+ S Sbjct: 2 LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSE-DDQAIALAAGAEDVVKSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A+AD + T+AR R+ S++ P+E +G V I+FGRER G Sbjct: 61 VTAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNG-KVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTP 186 LTNEE+ + ++ P NP + SLN++ AV L+ +E + + + + N Sbjct: 120 LTNEELLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIY 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL F + E G+ + + ++ L ++ R + + E+ +L G++S + Sbjct: 180 PQMEELEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAV 235 Query: 247 DKFSR 251 +K + Sbjct: 236 EKKLK 240 >gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421] gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421] Length = 246 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 6/251 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV Q N+G +AR + NF+L++L LV P E+AR + +A V+D R+ Sbjct: 2 NVRIVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++L +A+AD + TTAR R L P E A L +FG E GL+ Sbjct: 62 VASLSQALADCTRVAGTTARTRTVSDPPLLPAEGARWLR---ADKGTAAYVFGPEDRGLS 118 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEE+A + P +PSLN++QAV + + +S V + L Sbjct: 119 NEELAHCQRTVQIPTGAAYPSLNLAQAVGICAYALFTDS--KPPSPVFQNEPMPEAEVLE 176 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F +LE +L GY + ++K+ + +F R L +EV LLRG++ +D S Q+ Sbjct: 177 GFYGHLERTLLAIGYLQEHTAERKL-EKFRRLFNRAGLTAQEVALLRGVLRQIDWASTQN 235 Query: 254 SRRNNVLLQKT 264 R L T Sbjct: 236 PARQLPLTPDT 246 >gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454] Length = 318 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 6/238 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70 +LV+P N+G ARA+ ++L LV PR A++ ++ AD V+ + Sbjct: 71 TSVRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMASGADDVLAA 130 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L +A+A +H+ A TAR R LAP+ A+ + ++ ++FG ER Sbjct: 131 AHVVPTLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAA-GDIALVFGNERT 189 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPAT 188 GL+N ++ N + P NP + SLN++QAV ++ +E + ++ + + A Sbjct: 190 GLSNADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELRLALLDTAPQTPPAGVASPLAP 249 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV ++RGI + Sbjct: 250 HDEIERMFVHLENALIALDFLDPAS-PKKLMPRLRRLFARAGLEREEVNIVRGIAKHI 306 >gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549] Length = 247 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 7/245 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N I+LV+P N+G ARAM N LT L LVNP+ G ++A + S +A V Sbjct: 1 MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126 +++ + +NL+EA+ + ++ T+AR R + + A + +I S + + I+FG Sbjct: 60 VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQKSDEKIAILFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185 RER GL N E+ +SN P N + SLN++QAV L+ +E + ++ S+ K V E N Sbjct: 120 RERTGLLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179 Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ EL + E S+ + G+ +K ++D + +F R EL +EV +LRG Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238 Query: 243 VSTLD 247 +++L+ Sbjct: 239 LTSLE 243 >gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1003] Length = 292 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 31/273 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60 P L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ V L +A++ +H+ A TAR R P+ AA + + G+ Sbjct: 70 ASGADDVLACAHVVPTLADALSGVHWSVALTARQREYGPPQWTPRAAASLARDEALHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E N + S E+ Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMNYLTSGEEAH 188 Query: 179 -------------------------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213 + A E+ S +LE +L + P Sbjct: 189 VHTHATASTSAGRAPHAPGAAPAGSAAEPAGPRAASDEIESMFAHLESALVALEFLDPA- 247 Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 KK++ L +F R L REEV ++RGI + Sbjct: 248 NPKKLMSRLRRLFARSGLEREEVNIVRGIAKHI 280 >gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 217 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 +L F +LE +L G+ R ++++ L +F Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFT 217 >gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ] Length = 245 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 8/243 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + S G +ILV+PQ NIGMV RAM N L++LRLV +A + +A + Sbjct: 1 MPPSLTGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVA-GCDHLHPEAFKFAVSARDL 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ +F +L +A+AD+ ATT R+ + +L+P +AA L + + + ++FGR Sbjct: 60 LEQAELFDSLADALADISVSVATTRRSGKYRQELLSPPQAAQAL---LQAPGSAALVFGR 116 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GL+ +++L + P + + SLN++QA L+ +E + + + TPA Sbjct: 117 EDHGLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYELFGAATAETGSL---RRTPA 173 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 GEL ++E +L G+ P + ++ L IF R L EV +LRG++S +D Sbjct: 174 PSGELEPLFTHMEQTLLRIGHLNP-QNPGHIMRSLRRIFFRSGLDSREVAILRGMLSQID 232 Query: 248 KFS 250 + Sbjct: 233 WAA 235 >gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 246 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 11/242 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K I+L++ NIG ARAM LT L LV P+ E+A + +A A+ V+ S Sbjct: 2 LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSV-DEQAIALAAGAEDVVKSA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A+AD + T+AR R+ S++ P+E +G V I+FGRER G Sbjct: 61 VTAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNG-KVAIVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTP 186 LTNEE+ + ++ P NP + SLN++ AV L+ +E + + + + N Sbjct: 120 LTNEELLKCHYHVTIPANPDYASLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIY 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL F + E G+ + + ++ L ++ R + + E+ +L G++S + Sbjct: 180 PQMEELEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAV 235 Query: 247 DK 248 +K Sbjct: 236 EK 237 >gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia cenocepacia MC0-3] Length = 289 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61 +P +LV+P N+G ARA+ ++L LV PR +A + + Sbjct: 32 SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + AD V+ S V L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ Sbjct: 92 SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGAG-DI 150 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177 ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E E + S Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + E T A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 211 QPQAEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269 Query: 238 LLRGIVSTL 246 +LRGI + Sbjct: 270 ILRGIAKHI 278 >gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 244 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 5/234 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + +++ Sbjct: 8 VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P+E L +V ++FGRER GLTNEE Sbjct: 67 LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194 + L + + P NP + SLN++ AV L+ +E + S ++ Q EL Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 F +LE + + + ++ ++++ L +F +E+ +LRGI++++ K Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTHARPEAQEINILRGILTSVQK 238 >gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS] Length = 241 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 10/245 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 IILV NIG ARAM L+ LRLV P+ +PS +A + ++ AD ++ + Sbjct: 2 LDNIQIILVGITHPGNIGAAARAMKTMGLSHLRLVQPK-HFPSAEATARASGADDLLSNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +F N ++++ D H ++ T+ R R VL P A E + V ++FGRE+ G Sbjct: 61 LLFDNFEDSLKDCHLVFGTSTRQRMIAWPVLTPIACAEKALE---CPKPVALVFGREQSG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-----SSEKNVKEQNTP 186 LTN+E+ L N ++ P N F SLN++ AV ++ +E + + + P Sbjct: 118 LTNKELDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRKTNEAFIIKNDTNALKNSLPAP 177 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ + F +LE +L + + P +K K ++ L+ +F R +L+ EV +LRG+++ Sbjct: 178 ASLQAMAQFYQHLEQTLIDIEFLDP-QKPKLLMRHLHRLFNRVQLLDSEVQILRGLLTAA 236 Query: 247 DKFSR 251 K + Sbjct: 237 QKKGK 241 >gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB 1003] Length = 245 Score = 281 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 100/236 (42%), Positives = 138/236 (58%), Gaps = 2/236 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73 PV IL+ PQ+GENIG ARAM NF L+ LRLV+PRDGWP+ KA + ++ A V+D V Sbjct: 7 PVFILIRPQMGENIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKVLDHAGV 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F EAIAD F++ATTAR R K + P+ A RI +GQ VG++FG ER GL Sbjct: 67 FPTTAEAIADCDFVFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPERTGLE 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192 N++I +NAII+ PVNP F SLN++QAVLL +E + + A E+ Sbjct: 127 NDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQGSEAPAIDPGLAGAEMANALEI 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 D+ E L++ G+F P K M +L +++ R L R +V L G++ L + Sbjct: 187 EKLGDHYEERLDQAGFFFPAGKAPMMKRNLRNMWSRFGLTRADVQTLHGMLRQLLR 242 >gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum STM815] Length = 276 Score = 281 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 13/257 (5%) Query: 1 MTPYAPQLQNSAK------GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGW 52 +T +P NS +LV+P N+G ARA+ ++L LV+PR D Sbjct: 10 LTSSSPASDNSGTIGGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVK 69 Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 +A + ++ AD V+ S V L +A++ + A TAR R LAP+ AA Sbjct: 70 NDPEAIAMASGADDVLASAHVVPTLADALSGASWSLALTARAREYGPPQLAPRAAATQAR 129 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G ++ ++FG ER GL+N+++ +A+ P NP + SLN+SQA+ ++ +E Sbjct: 130 EHAAHG-DIALVFGNERTGLSNDDVERCSALAHIPANPAYSSLNLSQAIQVLSYELRMAY 188 Query: 173 IVS---SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 +V ++ A E+ +LE +L + P KK++ L +F R Sbjct: 189 LVEGDTADPASGSAGALAASDEIERMYVHLENALIALDFLDPG-NPKKLMSRLRRLFARS 247 Query: 230 ELMREEVFLLRGIVSTL 246 L REEV ++RGI + Sbjct: 248 GLEREEVNIVRGIAKHI 264 >gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 268 Score = 281 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 137/261 (52%), Gaps = 6/261 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +T P++ + + ++L P L NIG ARAM LT+L LVNPR +P +A + Sbjct: 9 LTMPKPEVPDFLRNVRVVLARPSLPANIGSAARAMKTMGLTRLYLVNPR-RFPDPEADTL 67 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A V+ V +L EA+ + A T+R R + AP+ A L + GQ Sbjct: 68 ASGAVDVLQQAVVTGSLGEALDGVALACALTSRKREITTPLAAPRIACAELLDAARQGQQ 127 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FG E +GL+ EE N +++ NP + SLN++QAV +M +E + ++ Sbjct: 128 VALVFGNETFGLSIEEAGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELFSQ-LDFPLDHL 186 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + Q A++ E+ +L+ +L G+ ++++ L ++F R +L R+E+ +LR Sbjct: 187 RFQTERASRDEVEGLYGHLDHTLSGIGF-YERRNSERLMRRLRTLFDRADLERQEIDILR 245 Query: 241 GIVSTLDKFS---RQSSRRNN 258 GI+ +++ + +RR++ Sbjct: 246 GILKQVERKTGLVPDPTRRDD 266 >gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H] Length = 264 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 147/241 (60%), Gaps = 1/241 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+ILV PQL ENIG ARAM N L LR+V PRDGWP E+A +S+ AD ++D+ +VF Sbjct: 24 PVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILDAAQVF 83 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +A+ADLH I+AT R R+ K V+ + AA L G GI+FG ER GL N Sbjct: 84 ETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPERAGLDN 143 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGELL 193 E++A ++ ++ +P+NP F SLN++QAVL+M +E ++ + + + ATKGE+ Sbjct: 144 EDMARADTLVRYPLNPKFMSLNLAQAVLIMAYEWFLTEDMTPPRELMTNETHVATKGEMD 203 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +F+ +L L+E + R +K+ M+ +L F R E+ +E+ L G+VS L R Sbjct: 204 NFMSHLIRDLDETNFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVSELSNARRNR 263 Query: 254 S 254 S Sbjct: 264 S 264 >gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Methylophilales bacterium HTCC2181] Length = 246 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L G NIG ARAM L+ L LV P+ +PS+ A + +A AD ++D + + Sbjct: 13 VVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPK-HFPSDDAYALAAGADDILDKAIIVGS 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D H TAR R + +E+A L I Q + ++FG E GL+N+E Sbjct: 72 LEDAIKDSHIAIGFTARRRELSQPHKNIRESAQNLIA-IAEDQKISLVFGNETNGLSNDE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGELLS 194 I + N + SLN++QAV + E S + + +N EL Sbjct: 131 IKHCQLLSFIDANKSYSSLNLAQAVQICCHELRVALDFSKDNAINRGTRNDFVPHSELNG 190 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE L + G+ R ++ ++++ L +F R +L ++EV ++RGI + + K + Sbjct: 191 FFIHLESMLNDIGFLRKIQ-GERLMQRLRLLFNRTQLDQDEVNIMRGIFTEIQKKIK 246 >gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC 29413] Length = 243 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 4/238 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G ++LV+P N+G +AR M NF L QL LVNP+ SE+A + +A +++S Sbjct: 3 LAGVRVVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESA 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L EA+ ATT R+ + ++ P+ A L E Q +IFGRE G Sbjct: 63 ITVPTLPEALHGCVRAIATTGRDNDRGLTLETPRIALPWLLEETS--QPSALIFGREDRG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ + I P +P + SLN++ AV + +E +N + E + A+ Sbjct: 121 LSNEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQN-LTPPETQTISETEFASLEF 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + ++ LE L GY P + ++ ++ R L EV +LRGI+ ++ Sbjct: 180 MEAYYQQLESLLLRIGYLYPHTATSR-MEKFRQLYNRAYLQTHEVGMLRGILRQIEWA 236 >gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena XCL-2] gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira crunogena XCL-2] Length = 268 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 138/261 (52%), Gaps = 7/261 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ I++V+ NIG VARAM N L+QL LVNP+D +PS+ A + ++ A V++ Sbjct: 9 SNLAKIKIVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKD-FPSQVASARASGAADVLN 67 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFG 126 +V L++A+AD + +AR R L ++ A + E + V I+FG Sbjct: 68 DAKVVETLEQAVADCKLVVGASARLRKVSWPQLDVRQTAELAMETVGQEDEDNQVAILFG 127 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNT 185 RE GL+N E+ + + P NP + SLNI+ AV + V+E + + + S + ++ Sbjct: 128 REDSGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYELLMATDIKSVHEAEGYRHK 187 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A+ ++ F D+L +L++ + P K + + + +F R +L +E+ +LRG+++ Sbjct: 188 LASSDQMEGFYDHLYQALQDIEFLDP-TKNARFMRRMRRLFNRSQLDVKEIDILRGVLTA 246 Query: 246 LDKFSRQ-SSRRNNVLLQKTE 265 + ++Q + R L K E Sbjct: 247 AQRQTKQLDTYRQQASLSKEE 267 >gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 281 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV Q NIG ARAM +++L LV P E A SA A+ V+++ V + Sbjct: 37 RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 95 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNE Sbjct: 96 VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ + Sbjct: 156 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 215 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + +L+E + + + L +F + EL ++E+ LLRG++S + + Sbjct: 216 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 274 Query: 252 QSSRRNN 258 +R+ Sbjct: 275 LKRQRDT 281 >gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624] gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624] Length = 279 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A Sbjct: 8 AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V + L++AI D H ++ T+AR+R +L + A+ + GQ + I+FG Sbjct: 67 LLEQVEIVETLEDAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177 RE GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKESVSDDGQMP 186 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245 Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258 E LLRGI S + K+ + SS + + Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275 >gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 242 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + IILV+ L NIG ARAM L+ LRLV P+ E+A + +A A ++D Sbjct: 2 DRLNQIQIILVETSLSANIGSAARAMKTMGLSNLRLVRPK-NPLDEQATALAAGAKNILD 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++F+ AIAD I T+AR R+ +++ P+E ++ + +IFGRER Sbjct: 61 NAQIFNTFDAAIADCQLIIGTSARLRHLQSTLVEPRECGKLIINNTNQ-HKIALIFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNT 185 GLTNEE+ + ++ P NP + SLN++ AV L +E + +K + E+ Sbjct: 120 IGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIRMAWLELQKKPIIQPLTEEKN 179 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 T + F D+ E +E G+ R ++ L ++ R +L E+ LLRG+++ Sbjct: 180 YPTAAAMAHFFDHTERLYKELGFIRN----DAVMLKLRRLYQRAKLEENELNLLRGMLTA 235 Query: 246 LDKFS 250 ++K Sbjct: 236 VEKHR 240 >gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414] Length = 245 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 4/242 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV+P N+G +AR M NF L L LVNP+ +E+A + +A +++S + + Sbjct: 7 RIVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAVLVT 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ ATTAR R+ + P+ A L E + +IFGRE GL+NE Sbjct: 67 TLPEALQGCVRAIATTARVRDWETPLENPRTALPWLLE--SPSEPAALIFGREDRGLSNE 124 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + P + + SLN++ AV + +E A+ + ++ Sbjct: 125 ELNYAQRFVRIPSSENYSSLNLASAVGICCYEL-AQYTAPPTTPPPSPTELASLDIVETY 183 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 LE L + GY P + + ++ R L +EV +LRGI+ ++ + Sbjct: 184 YQQLESLLLDIGYLYPHTATSR-MAKFRQLYNRAHLQTKEVAMLRGILRQIEWALKNQGN 242 Query: 256 RN 257 N Sbjct: 243 EN 244 >gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius nubinhibens ISM] Length = 231 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 142/231 (61%), Gaps = 1/231 (0%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +GENIG ARAMWNF L ++RLV+PRDGWP+ KA + ++ A ++D ++ ++ A+AD Sbjct: 1 MGENIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVAD 60 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F++ATTAR+R K V P+ A + E+I G+ V ++FG ER GL N+++A +NAI Sbjct: 61 TSFVFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAI 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 I+ PVNP F SLN++Q VLL+ +E M S V+ + A++ E+ ++ E Sbjct: 121 INVPVNPQFASLNLAQCVLLVGYEWMRQQSDVAPVQEGLGDTQWASRDEIAKLAEHYEER 180 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 +EE G+F P K M +L + + R L + ++ ++ G++ + ++ + Sbjct: 181 MEEAGFFFPEHKAANMRRNLRNFWSRMPLTQADIRMMHGVMRQMVRWKDRG 231 >gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] Length = 279 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A Sbjct: 8 AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FG Sbjct: 67 LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177 RE GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKVLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245 Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258 E LLRGI S + K+ + SS + + Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275 >gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis C4D1M] Length = 378 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 33/286 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60 P L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 97 PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 156 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ S V L +A++ +H+ A TAR R P+ AA + + G+ Sbjct: 157 ASGADDVLASAHVVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178 + ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + S + Sbjct: 216 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAEVN 275 Query: 179 ------------------------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 + + A E+ S +LE +L + P Sbjct: 276 ASASRAPQASTGSAASAASTAAAASAEPAGPRAASDEIESMFTHLESALVALEFLDPA-N 334 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260 KK++ L +F R L REEV ++RGI + ++ R+++ Sbjct: 335 PKKLMSRLRRLFARSGLEREEVNIVRGIAKHI---LLKTGRKDDSA 377 >gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7822] Length = 256 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 5/248 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + + IILV+P N+G VAR M N L +L LVNP+ S++AR + + ++ Sbjct: 3 KTALEEVRIILVEPAGALNVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDIL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ++ ++L +A+ ATT R+R +P+ A L + IIFG E Sbjct: 63 EQLQQVNSLPQALVGCQRAIATTGRSRTLPTHFESPRAALPWL---LTPHSTSAIIFGPE 119 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPA 187 GL+N E+ + + P NP +PSLN++QAV + +E + ++ +S ++ + A Sbjct: 120 DRGLSNSELNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQAALTTSASELEVNSLETA 179 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T L ++ LE L + GY P + + ++ + ++ + L +EE+ +LRGIV +D Sbjct: 180 TLDALEAYYQDLETLLLKIGYLYPHTARAR-MEKIRRLYYKAHLHQEELAMLRGIVRQMD 238 Query: 248 KFSRQSSR 255 + S+ Sbjct: 239 WAMQHLSK 246 >gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1] gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1] Length = 257 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 152/248 (61%), Gaps = 1/248 (0%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ PVIILV PQL ENIG ARAM N L LRLV+PRDGWP ++A +++ AD Sbjct: 9 PLQPRDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGADN 68 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++DS+ V +++A+ADLH ++AT R R+ K+++ + AA + G GI+FG Sbjct: 69 ILDSLTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILFG 128 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185 ER GL N+++A ++ ++ +P+NP F SLN+SQAV++M +E + + + ++ Sbjct: 129 PERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWWMAQDATPSRQLMTNESH 188 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 ATKGEL +FL +L L+E G+ R +K+ M+ ++ F+R E+ +E+ L GIV Sbjct: 189 VATKGELNNFLRHLVRELDECGFLRNEQKRSGMIRNIRHFFLRGEVTEQELRTLHGIVHE 248 Query: 246 LDKFSRQS 253 L + + Sbjct: 249 LSRGRGRG 256 >gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5] Length = 257 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 1/252 (0%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 L PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ Sbjct: 5 DEGADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTAS 64 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++++ V + +A+ DLH ++AT R R+ K +L + AA L E G G Sbjct: 65 GAYRILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCG 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK- 181 I+FG ER GL N++IA ++++I +P+NP F SLN++QAV++M +E + + ++ Sbjct: 125 ILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRTLQT 184 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + ATKGEL +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L G Sbjct: 185 HKTHVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHG 244 Query: 242 IVSTLDKFSRQS 253 IV+ L + R + Sbjct: 245 IVTELARGRRGA 256 >gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium HTCC5015] Length = 239 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++V ENIG VARAM N L L LV PRD WPS+ AR+ +A A V+D++ + Sbjct: 2 RVVMVRTFQSENIGAVARAMKNMGLNDLVLVAPRD-WPSDVARNRAAGAVDVLDNIALAD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++EAIAD H++ AT+AR R + +++ R GQ V I+ G ER GL ++ Sbjct: 61 SVEEAIADCHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSD 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATKGEL 192 + L + NP +P LN++QA ++ +E + S E + + Sbjct: 121 SLRLCDQHCYISANPDYPVLNVAQAAQVLTYELYQASEAGGELPETPDSNRPRYPKHEAV 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +LE +L G+ RP ++ L + + ++ E+ +LRGI+S +++ R Sbjct: 181 EHFYQHLESALTHIGFLRPEHPGDTLV-KLRRLLTKAQIEDSELNMLRGILSAIERLER 238 >gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 256 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S +G I+LV+P NIG ARAM L L LV+PR +P +A + ++ A+ +++S Sbjct: 5 SLQGLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPR-FFPDPEATALASGAEDILES 63 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V +NL A+ H +Y T+AR R +EAA + + +G + ++FGRER Sbjct: 64 AQVCTNLDTALQGCHKVYGTSARGRRIQWPASNAREAAGEILADLDTG-DCALLFGRERT 122 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----P 186 GLTN E+ ++ P + SLN+ QAV ++ +E ++ + P Sbjct: 123 GLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYELHMAALTAQPAQDVPAEDVPEQP 182 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A ++ F +L+ L G+ + + + M +F R + EV +LRGI++ + Sbjct: 183 APIEDMEGFYGHLQHVLRRSGFLQEIRATRMMRRL-RRLFDRARPSQNEVNILRGILTEI 241 Query: 247 DKFSRQSSRRNNVLL 261 ++++ + R++ L Sbjct: 242 ERWASKVDRKDQDSL 256 >gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] Length = 271 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 20/271 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A + Sbjct: 1 MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQDL 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FGR Sbjct: 60 LEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------- 177 E GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 120 EDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPL 179 Query: 178 ---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 180 AQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRM 238 Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260 E LLRGI S + K+ + SS + + Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKASSDKEDQP 269 >gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC 29256] Length = 271 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 21/273 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P+L + IIL NIG ARAM L +L +V Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTGQPP 60 Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 NP+D E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRELVPELLQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + S+F R E++ +LRG +T+ ++ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKKD 271 >gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6014059] Length = 279 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 20/272 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A Sbjct: 8 AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FG Sbjct: 67 LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177 RE GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245 Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNNVL 260 E LLRGI S + K+ + SS + + Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKEDQP 277 >gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 257 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 1/252 (0%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 L PVIILV PQL ENIG VARAM N L LRLV PRDGWP ++A +++ Sbjct: 5 DEGADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTAS 64 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++++ V + +A+ DLH ++AT R R+ K +L + AA L E G G Sbjct: 65 GAYRILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCG 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK- 181 I+FG ER GL N++IA ++++I +P+NP F SLN++QAV++M +E + + ++ Sbjct: 125 ILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRKLQT 184 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + ATKGEL +FL +L +E G+ R +K+ M+ ++ F R E+ +E+ L G Sbjct: 185 HKTHVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHG 244 Query: 242 IVSTLDKFSRQS 253 IV+ L + R + Sbjct: 245 IVTELARGRRGA 256 >gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120] gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120] Length = 243 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 4/238 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G I+LV+P N+G +AR M NF L L LV+P+ SE A + +A +++S Sbjct: 3 LAGVRIVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESA 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L A+ AT+ R+ + ++ P+ A L E +GQ +IFGRE G Sbjct: 63 ITVPTLPAALHGCVRAIATSGRDNDWGLTLETPRIALPWLLEE--TGQPSALIFGREDRG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+ + I P +P + SLN++ AV + +E +N + E + A Sbjct: 121 LSNEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQN-LTPPETQTISETEFAPLEF 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + ++ LE L GY P + ++ ++ R L EV +LRGI+ ++ Sbjct: 180 VEAYYQQLESLLLRIGYLYPHTATSR-MEKFRQLYNRAYLQTHEVGMLRGILRQIEWA 236 >gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] Length = 263 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV Q NIG ARAM +++L LV P E A SA A+ V+++ V + Sbjct: 19 RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNE Sbjct: 78 VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 137 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ + Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + +L+E + + + L +F + EL ++E+ LLRG++S + + Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256 Query: 252 QSSRRNN 258 +R+ Sbjct: 257 LKRQRDT 263 >gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. Ch1-1] Length = 278 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 19/271 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSS 61 +L+ +LV+P N+G ARA+ ++L LV+PR +A + + Sbjct: 11 AVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMA 70 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + AD V+ S V L +A++ +H+ A TAR R AP+ AA V E+ G+ + Sbjct: 71 SGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-I 129 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-------- 173 ++FG ER GL+NE++ +A+ P NP + SLN++QAV ++ +E + Sbjct: 130 ALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATTA 189 Query: 174 -----VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 ++ + A E+ S +LE +L + P KK++ L +F R Sbjct: 190 AHAAPRAAAGPAEPAGARAASDEIESMFMHLESALVALEFLDPA-NPKKLMSRLRRLFAR 248 Query: 229 PELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259 L REEV ++RGI + + + + Sbjct: 249 SGLEREEVNIVRGIAKHI--LLKTGPKGGDA 277 >gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB900] gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB056] gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB058] gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB059] gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii AB0057] gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein [Acinetobacter baumannii AB307-0294] gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013150] gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter baumannii 6013113] Length = 279 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A Sbjct: 8 AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FG Sbjct: 67 LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177 RE GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245 Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258 E LLRGI S + K+ + SS + + Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275 >gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei 91] gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei K96243] gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 576] Length = 303 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ A +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAVASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia PC184] Length = 289 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61 +P +LV+P N+G ARA+ ++L LV PR +A + + Sbjct: 32 SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + AD V+ S V L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ Sbjct: 92 SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DI 150 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177 ++FG ER GL NE + +A+ P NP + SLN++QAV ++ +E E + S Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + E T A E+ +LE +L + P KK++ L +F R L REEV Sbjct: 211 QPQAEVGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269 Query: 238 LLRGIVSTL 246 +LRGI + Sbjct: 270 ILRGIAKHI 278 >gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 279 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV+P+ +P ++ +A A Sbjct: 8 AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-MYPHPDIQALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V + L+EAI D H ++ T+AR+R +L + A+ + GQ + I+FG Sbjct: 67 LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177 RE GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E + + E Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186 Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 ++++ T+ ++ F +LE L E + P E + + L +F R +L R Sbjct: 187 LTQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245 Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258 E LLRGI S + K+ + SS + + Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275 >gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus DSM 2379] Length = 251 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 5/238 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A I++V+PQ NIGMV RAM N L++LRLV D + ++ + +A +++ Sbjct: 9 ADSVSIVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGCDRF-HPESLKFAVSAKDLLERA 67 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +L A+AD TT R+ + +L+P + A +L R ++FGRE G Sbjct: 68 ELYDDLASALADCALTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSG 127 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT +E++L + P + + SLN+SQAVLL +E + S PAT E Sbjct: 128 LTTDELSLCRWHATIPTSSEYGSLNLSQAVLLFCYELGKASDSPGG---GRTEIPATSAE 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + + ++ SL+ G+ + ++ L I R EL E+ +LRG+ S +D Sbjct: 185 METLFSQMDTSLQRIGFLN-EQNPGHIMRSLRRILFRSELDNRELAILRGMFSQVDWA 241 >gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. CCGE1002] Length = 276 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 19/261 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60 P L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PTVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ SV V +L +A+A +H+ A TAR R P+ AA + G+ Sbjct: 70 ASGADDVLASVHVVPSLADALAGVHWSIALTARLREYGPPQWTPRAAAAAAHAEALHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------- 173 + ++FG ER GL+NE++ +AI P NP + SLN++QAV ++ +E + Sbjct: 129 IALVFGNERTGLSNEDVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRTAYLGTDQTTD 188 Query: 174 --------VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 ++ ++ + A E+ S +LE +L + P KK++ L + Sbjct: 189 GAPAPGARIAPAESAGTRAQMAASDEIESMFVHLESALVALEFLDP-SNPKKLMSRLRRL 247 Query: 226 FIRPELMREEVFLLRGIVSTL 246 F R L REEV ++RGI + Sbjct: 248 FARSGLEREEVNIVRGIAKHI 268 >gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 247 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 3/232 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV ILV+PQ+GENIG R M NF + +LR+VNPRDGWP+ KA S + + V+D RVF Sbjct: 7 PVFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKAVSMAT-SSPVLDDARVF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+EA+AD ++A+TA+ RN K V +E + + +GQ VG++FG E+ GL N Sbjct: 66 DTLEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 I LSNAII+ PV+ F SLN++ AV + E + + ++ K + AT+ E+ + Sbjct: 126 AAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR--AGEPTPEDFKPLDDRATEQEMTA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 F +LE L+ G+F P EK M+ +L + F R L ++EV LRG++ L Sbjct: 184 FYAHLEQELDRAGFFYPPEKTPLMMQNLINAFARGGLTQQEVRTLRGVIKAL 235 >gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca] gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 255 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 11/246 (4%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + I+LV+P N+G +AR M N LTQ+ LV+P S +A++ + +A V+ Sbjct: 7 ETALTTIRIVLVEPAGALNVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVL 66 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +S ++ +L +A+ ATTAR+R+ +++ P+ L + +IFG E Sbjct: 67 ESAQIVDSLPQALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLQS-----PAALIFGPE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNT 185 GL+N E+ + I+ P + + SLN++QAV + +E ++ I SS E + Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDSSTLPTPEPSE 181 Query: 186 P--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 P AT +L + LE L + GY P + ++ +F R + EV +LRG++ Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSR-MEKFRHLFNRAQPSSTEVAMLRGVI 240 Query: 244 STLDKF 249 S ++ Sbjct: 241 SQVEWA 246 >gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23] gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa M23] gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 263 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV Q NIG ARAM +++L LV P E A SA A+ V+++ V + Sbjct: 19 RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNE Sbjct: 78 VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNE 137 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ + Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + +L+E + + + L +F + EL ++E+ LLRG++S + + Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256 Query: 252 QSSRRNN 258 +R+ Sbjct: 257 LKRQRDT 263 >gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 263 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 127/250 (50%), Gaps = 10/250 (4%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP L+ I+LV+ NIG ARAM L +L LV P +P +A + + Sbjct: 15 APLAPDLR-------IVLVETSHPGNIGSAARAMKVMGLERLVLVRPH-RFPDAQATALA 66 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A+ +++ V+ +L A+AD +Y TTAR+R+ L + AA + + + V Sbjct: 67 SGAEDLLERAEVYDDLAAALADCRRVYGTTARDRHIAWPQLTARPAAAEIVA-LGASAPV 125 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 I+FG ER GL+N E+ L +I P + SLN++QAV ++ +E + + Sbjct: 126 AILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYELLLAQRETRHPAPS 185 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 T A + + F +L L + G+ + ++ M+ L +F R EV++LRG Sbjct: 186 VLETAAPRAAMEGFYGHLAQVLRQAGFLQAP-RETHMMRRLRRLFDRARPDLNEVYILRG 244 Query: 242 IVSTLDKFSR 251 I++ ++++++ Sbjct: 245 ILTEVERWAQ 254 >gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160] Length = 276 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 19/261 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60 P +L+ +LV+P N+G ARA+ ++L LV+PR +A + Sbjct: 10 PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ AD V+ SV V L +A+ +H+ A TAR R P+ AA V +E G+ Sbjct: 70 ASGADDVLASVHVVPTLADALTGVHWSVALTARLREYGPPQWTPRAAAAVAHEEAVHGE- 128 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------- 173 + ++FG ER GL+NE++ +AI P NP + SLN+ QAV ++ +E + Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELRTAYLCDDETTD 188 Query: 174 --------VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 ++ + A E+ S +LE +L + P KK++ L + Sbjct: 189 GAPALRAGAGQAESTGTRAQMAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRL 247 Query: 226 FIRPELMREEVFLLRGIVSTL 246 F R L REEV ++RGI + Sbjct: 248 FARSGLEREEVNIVRGIAKHI 268 >gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC 25996] Length = 271 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 21/273 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 MT P+L + IIL NIG ARAM L +L +V Sbjct: 1 MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTEQPP 60 Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 NP+D E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRELVPELLQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + S+F R E++ +LRG +T+ ++ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKKD 271 >gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 384 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + P I+LV PQLGENIG ARAM NF LT+LRLV PRDGWP+ A S+A AD V++ + Sbjct: 137 QKPAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRDGWPNPDAGPSAAGADDVLERAQ 196 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF+ EA+AD IYATT R R K V+ P+EAA ++ + ++FG ER GL Sbjct: 197 VFATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQAIHSQA---GKSAVLFGPERSGL 253 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 E++AL+ AI++ P++P F SLN++QAV+L +E + + + ++ PA + EL Sbjct: 254 ETEDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSKGAELEQPTQ-EDLLPPAPQAEL 312 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +LE L+ +GYF P + + L ++ +P E+ LRG++S+L + + Sbjct: 313 DDLIAHLEAMLQPKGYFLPANRTEATRRTLRTVLTKPGWNHLEIRTLRGVLSSLQRGDK 371 >gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia psychrerythraea 34H] Length = 273 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 19/254 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+ NIG ARAM L+QL LV+P + P+ +A++ +A A V+ + +V S Sbjct: 23 IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIEM-PNGQAQAMAAGATDVLANAKVVST 81 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAI D + T+AR+R +L P+ + V ++FGRE GLTNEE Sbjct: 82 LAEAIEDCGLVVGTSARSRTLPWPMLEPRGCGEKMIAEADE-YPVALVFGRENSGLTNEE 140 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----------- 185 + L + + P NP + SLN++ AV + +E + +++ ++N +E++T Sbjct: 141 LQLCHFHVQIPANPEYSSLNLAMAVQTLSYEVRTSYLLAHDQNYQERSTGNGNSIAKTKN 200 Query: 186 -----PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 E F + E +L+ G+ ++ L +F R +E+ ++R Sbjct: 201 EDDELYPVIEETERFYQHFEKALKATGFIV-ENHPGLVMTKLRRLFNRARPDVKEIKMMR 259 Query: 241 GIVSTLDKFSRQSS 254 GI +++++ S++ S Sbjct: 260 GIFASMERSSKEKS 273 >gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon] gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1] gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 263 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV Q NIG ARAM +++L LV P E A SA A+ V+++ V + Sbjct: 19 RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNE Sbjct: 78 VLADAVADCTFVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 137 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ + Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + +L+E + + + L +F + EL ++E+ LLRG++S + + Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256 Query: 252 QSSRRNN 258 +R+ Sbjct: 257 LKRQRDT 263 >gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittHH] Length = 241 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ R + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFIRN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae] gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG] gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127] gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus aegyptius ATCC 11116] Length = 241 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus capsulatus str. Bath] Length = 247 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 4/233 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+ NIG VARAM N L+ L LV+P+ +PSE+A + ++ AD ++ + R+F Sbjct: 5 IRIVLVETTHPGNIGGVARAMKNMGLSDLALVSPK-IFPSEQATARASGADDLLAAARLF 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +LK+AIAD + +AR R L P+ AA + + G I+FGRE GLTN Sbjct: 64 GSLKDAIADCQLVIGASARLRTIAWPELDPRTAAAEIAG-LPEGTRSAIVFGREHSGLTN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+ + ++ NP F SLN++ AV ++ +E + + + A ++ S Sbjct: 123 GELEQCHFLLHIASNPEFSSLNLACAVQVVAYELYLAA--GQGGSGRRSPPLADGEQMAS 180 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 F D+LE +L + + ++ L IF + +E+ LLRGI++ Sbjct: 181 FFDHLERTLYDIRFLHARRSSPSIMRRLRRIFNSARIEAQEIHLLRGILTAAQ 233 >gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2846] Length = 241 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus influenzae R2866] Length = 241 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E++ P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKSYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TVDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810] Length = 241 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LDNIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] Length = 241 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As] Length = 260 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 3/252 (1%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSS 61 A S V +LV N+G ARA+ N LRLV PR D + + + Sbjct: 10 EAAACAPSLDDTVFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFA 69 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A+ V+ + +V L +A+AD + A +AR R+ + P+ + G+ V Sbjct: 70 SGAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRV 129 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG ER+GL+N ++ +A++S P NP + SLN++QAV ++ WE + + + + + Sbjct: 130 AFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKEVGLHAVQPAQ 189 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 ++ AT GE+ L ++E +L P +K+L L + R EL R+EV +LRG Sbjct: 190 TESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRG 248 Query: 242 IVSTLDKFSRQS 253 + + + + + Sbjct: 249 VCTAVLRKVPKG 260 >gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1] Length = 250 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 8/246 (3%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ I+LV+PQ NIG VAR M N L QL +V+PR E A+ + +A+ V+ Sbjct: 2 DTLPAVRIVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQ 61 Query: 70 SVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +L+ A+AD ++AT R+ + P++AA L + S ++FGRE Sbjct: 62 QANVTDSLEAALADCQRVFATVGRDVADLALPCWTPRQAAPQLLAVVQS----ALVFGRE 117 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLTN E+ ++ ++ P +PSLN++QAV + +E + S E + P Sbjct: 118 DRGLTNAELECAHGLVKIPTANTYPSLNLAQAVAVCCYELWLTACDSGETFPQGDAVP-- 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L F D+LE L + G+ P + + + S+ R EV LLRG+V ++ Sbjct: 176 FERLQGFYDHLEQVLLQIGFLYPHTAASR-MAKVRSLLGRAYPTEAEVALLRGMVRQVEW 234 Query: 249 FSRQSS 254 + ++ Sbjct: 235 AIQHAA 240 >gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] Length = 252 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV Q NIG ARAM +++L LV P E A SA A+ V+++ V + Sbjct: 8 RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD F+ TAR R L P AA + I + V ++FGRER GLTNE Sbjct: 67 VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNE 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191 E+ L + + P +PLF SLN++ AV ++ +E S+ + + + TPA+ + Sbjct: 127 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 186 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + +L+E + + + L +F + EL ++E+ LLRG++S + + Sbjct: 187 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 245 Query: 252 QSSRRNN 258 +R+ Sbjct: 246 LKRQRDT 252 >gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia K12] Length = 260 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 3/252 (1%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSS 61 A S V +LV N+G ARA+ N LRLV PR D + + + Sbjct: 10 EAAACAPSLDDTVFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFA 69 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A+ V+ + +V L +A+AD + A +AR R+ + P+ + G+ V Sbjct: 70 SGAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRV 129 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG ER+GL+N ++ +A++S P NP + SLN++QAV ++ WE + + + + + Sbjct: 130 AFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKGIGLHAVRPAQ 189 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 ++ AT GE+ L ++E +L P +K+L L + R EL R+EV +LRG Sbjct: 190 AESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRG 248 Query: 242 IVSTLDKFSRQS 253 + + + + + Sbjct: 249 VCTAVLRKVPKG 260 >gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli] Length = 239 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 7/239 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 I+LV NIG ARAM L QL LV P+ +P A +++A ++ Sbjct: 2 PLSQLRIVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQ-SFPHINASVRASHAIDILAD 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L+EA+ D ++ T+ R R L P+ AA + Q + I+FG+ER Sbjct: 61 AIVVDQLEEALGDCQLVFGTSTRVREFNWVSLTPRVAAEKIMNHCQ--QKIAILFGQERC 118 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATK 189 GLTN+E+ + ++ P NP + SLN++ AV ++ +E + EKN+K++ P A Sbjct: 119 GLTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYELRNAFL--QEKNIKKRTVPLADV 176 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + F L+ L++ + +P + + ++D L IF R EL +E+ +L+GI S L+K Sbjct: 177 KQHDYFYGQLQKRLKKIEFLKP-NRSQHVMDKLRRIFSRAELDSDEIKILQGIFSALEK 234 >gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8802] Length = 243 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 5/237 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ Sbjct: 2 SLTQVRIILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQ 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + S+L EA+ ATT R R + S+ PK A L + +IFG E Sbjct: 62 AQRVSSLPEALQGCQRAIATTGRPRTST-SLETPKNALPWL---LTPHLTSALIFGPEDR 117 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NEE+ + + P N +PSLN++Q+V + +E + + PA+ Sbjct: 118 GLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPHNVPPYPATEPASLD 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L + +LE L + GY P K ++ ++ R L EEV LLRGIV +D Sbjct: 178 ILEGYYQHLESFLLKIGYLHPHTATAK-MEKFRKLYNRANLSAEEVALLRGIVGHID 233 >gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] Length = 243 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 144/244 (59%), Gaps = 3/244 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++ PVI+LV PQLGENIG ARAM NF L ++RLV PRDGWP+ +A +++ AD V+ Sbjct: 3 QPPSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +V+ ++ +A+AD +YATT R R K V+ P+EAA + + +FG E Sbjct: 63 EQAKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAAREI--HADTVGRAAFLFGPE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GL +++A++ I++ P+NP F SLN++QAV+L+ +E + ++ E A Sbjct: 121 RSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSKGVDLAQPPET-ELPPVAP 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + EL + LE L+ GYF P ++ L ++ +P +EV LRG++STL + Sbjct: 180 QFELDGMIGQLEEMLDGAGYFFPPDRTPATKRTLRTLLTKPGWSSQEVRTLRGVLSTLAR 239 Query: 249 FSRQ 252 + Sbjct: 240 PRER 243 >gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 8801] Length = 243 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 5/237 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S IILV+P N+G VAR M N L +L LVNP+ SE+A+ + + V++ Sbjct: 2 SLTQVRIILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQ 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + S+L EA+ ATT R R + S+ PK A L + +IFG E Sbjct: 62 AQRVSSLPEALQGCQRAIATTGRPRTST-SLETPKNALPWL---LTPHLTSALIFGPEDR 117 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NEE+ + + P N +PSLN++Q+V + +E + + PA+ Sbjct: 118 GLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPQNVPPYPATEPASLD 177 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L + +LE L + GY P K ++ ++ R L EEV LLRGIV +D Sbjct: 178 ILEGYYQHLETFLLKIGYLHPHTATAK-MEKFRKLYNRANLSAEEVALLRGIVGHID 233 >gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp. AL212] Length = 241 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 4/235 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 IIL NIG ARAM L+ L L+NP+ +P ++A + +A +++ +RV Sbjct: 9 NIRIILSHTSHPGNIGAAARAMKTMGLSSLYLINPK-TFPDKEADVRAVSARDILEKIRV 67 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + L EA+ + A TAR R+ V ++ A L R V ++FG E GLT Sbjct: 68 CTTLDEALDNTVLTAAMTARPRDLSHDVFNARQGARELL-RYARQHPVALLFGTETSGLT 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 E++ II P NP F SLN++ AV +M +E ++ +++ V PA+ EL Sbjct: 127 TAEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELRMA-LIENDEPVPLAGFPASFNELE 185 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +LE + + P +K + ++ + +F R L +EEV +LRGI++ L K Sbjct: 186 LLYAHLEQVMIASDFLDP-QKPRLLMQRIRRLFGRARLEKEEVRILRGILTALGK 239 >gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 245 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 4/239 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +++V+ NIG ARAM N NL++L LVNP+ G+PS A + ++ AD ++ + V Sbjct: 10 SVRVVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSAVATARASGADDLLANAVV 68 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGL 132 L+EA+ H + +AR RN + A + + GQ V ++FG E++GL Sbjct: 69 CETLEEALQGSHLVIGASARQRNIKWKQMDVVGACSEIQQATTTEGQEVSVVFGTEKYGL 128 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TNEE+ L +++ P NP + SLN++ A+ + ++ + ++ + K N A+ EL Sbjct: 129 TNEELDLCQILMTIPGNPNYFSLNVASAIQVFAYQNYIS--NTTTEFEKSSNELASFDEL 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F +L LE YF K+ ++ L F R E +EEV + RGI+ + F + Sbjct: 187 EGFYTHLTQVLEHIEYFEDKRPKELLMRRLRRFFGRSEPEKEEVAIFRGILRNIRPFKK 245 >gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima CS-328] Length = 255 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 11/246 (4%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + I+LV+P N+G AR M N LTQ+ LVNP S +A++ + +A V+ Sbjct: 7 ETALAKIRIVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVL 66 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +S ++ +L A+ ATTAR+R+ +++ P+ L +IFG E Sbjct: 67 ESAQIVDSLPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLHS-----PAALIFGPE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-- 186 GL+N E+ + I+ P + + SLN++QAV + +E ++ ++N P Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDQNTLPSPEPSE 181 Query: 187 ---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 AT +L + LE L + GY P + ++ +F R + EV +LRG++ Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSR-MEKFRHLFNRAQPSSTEVAMLRGVI 240 Query: 244 STLDKF 249 S ++ Sbjct: 241 SQVEWA 246 >gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106] Length = 317 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 21/267 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + IILV+P N+G VAR + N L QL VNP+ E+A+ + +A + Sbjct: 2 LDEALAQVRIILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADL 61 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +++ + + L EA+ ATTAR R+ + P+ L E +IFG Sbjct: 62 LETATITATLPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLET-----PSALIFGP 116 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS----------- 176 E GL+NEE+ + + P + +P+LN++QAV + +E + + V+ Sbjct: 117 EDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASA 176 Query: 177 -EKNVKEQNTPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232 + V PA+ L F ++LE L GY P + ++ +F R +L Sbjct: 177 ASRPVSSPIQPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASR-MEKFRRLFNRADLS 235 Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNV 259 + EV +LRGI+S ++ + + V Sbjct: 236 QTEVNMLRGILSQMEWALNSTQQSGTV 262 >gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus chthonoplastes PCC 7420] Length = 262 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 16/260 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + IILV+P N+G VAR M N L QL LVNP + +AR + + V++S Sbjct: 2 TLANVRIILVEPAGALNVGSVARVMKNMGLNQLWLVNPHCNPRASEARQMAVHGVEVLES 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + L EA+ ATTAR R+ ++ P+ A L + +IFG E Sbjct: 62 AQQVATLPEALEGCQRAIATTARTRHLPTTLEPPRLALPWL---LAENITSALIFGPEDR 118 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------K 178 GL+N+E+ + + P NP +PSLN++QAV + +E + + +SS+ Sbjct: 119 GLSNDELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQLTSLSSQTRHSTSLQAPQTH 178 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + +T A+ + ++ +LE L + GY P + ++ ++ R L E+V + Sbjct: 179 HGTSLHTTASLDAIEAYFQHLEAVLLKIGYLHPHTATSR-MEKFRRLYYRAMLTPEDVAM 237 Query: 239 LRGIVSTLDKFSRQSSRRNN 258 LRGI+ + + R Sbjct: 238 LRGILRQTEWAVQFMPRSEQ 257 >gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium chloromethanicum CM4] Length = 245 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 105/246 (42%), Positives = 161/246 (65%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V++ L EAIADLHF+ ATTAR R K V AP++A ERI G+ VG++FGRER G Sbjct: 61 KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190 L+N+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LS LE +L G+ P EK++ + ++ + R + ++V RG + L++ + Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239 Query: 251 RQSSRR 256 R++ Sbjct: 240 RKTDEA 245 >gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans ATCC 17616] Length = 289 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 44 RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 103 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S L EA++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL Sbjct: 104 VSTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 162 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189 NE + +A+ P NP + SLN++QAV ++ +E E + +++ + T A Sbjct: 163 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQS 222 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV +LRGI + Sbjct: 223 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 278 >gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium nodulans ORS 2060] Length = 248 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 156/238 (65%), Gaps = 2/238 (0%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + PVIILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D Sbjct: 4 HPPPRPVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLD 63 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + + EAI DLH + ATTAR R K V+ P A + R+ +G+ VGI+FGRER Sbjct: 64 GATIHATVAEAIGDLHHVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRER 123 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPAT 188 GL+N+E++L++AI++FPV+P PSLN++Q+VLL+ +E + +++ E ++ PA+ Sbjct: 124 VGLSNDEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRRAAGLAALPFDGELRSPPAS 183 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + LL+ + LE +L+ GYF P EK+ M+ +L I R + ++V LRG++ L Sbjct: 184 REALLALFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDVRSLRGVLRAL 240 >gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1] Length = 245 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 161/246 (65%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V++ L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER G Sbjct: 61 KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190 L+N+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LS LE +L G+ P EK++ + ++ + R + ++V RG + L++ + Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239 Query: 251 RQSSRR 256 R++ Sbjct: 240 RKTDEA 245 >gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301] Length = 257 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 4/235 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S ++L NIG ARAM L L LV P D +P A + S A +++ Sbjct: 16 ESLHNVRVVLCQTSHPGNIGSAARAMKTMGLKHLYLVKP-DKFPDAHATALSTGAADLLE 74 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + V L EA+ +AR R ++ +EAA+ + +I + Q + ++FG E Sbjct: 75 NAIVTETLSEALQGCVLAIGMSARKRQISHELVNVREAAMRAS-KIAASQPIALVFGTEM 133 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL+N E+ + P NP + SLN++ AV +M +E + + AT Sbjct: 134 SGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMRMAVLECKLDEITP-TEYATN 192 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 L +LE +L + GY P KK+ + + I+ R +L +EEV LLRGI++ Sbjct: 193 EALEGLYAHLEDTLIKIGYLNP-NAPKKLSERIRRIYARAKLEKEEVNLLRGILT 246 >gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis Bem] Length = 245 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 117/242 (48%), Gaps = 6/242 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV Q NIGMV RAM N L+ LRLVNP A + +A ++DS R+F++ Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNP-CQVDHLDAVKFAVSARNLLDSARIFTS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AIAD F ATT R+ + P E + + ++FGRE GLT +E Sbjct: 68 LEDAIADCEFSVATTRRHGKYRNEISTPAEIVERFSA-CAPASRMALVFGREDSGLTTDE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL + F SLN+SQAVL+ +E ++ + VK+ A L Sbjct: 127 VALCRWQATIETADEFGSLNLSQAVLIFCYEFLKGV---APAPVKQARDIAGSASLEPLY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++E S GY P + M+ L IF R EL EV LRG++S +D + + Sbjct: 184 QHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQIDWACSEFKGK 242 Query: 257 NN 258 Sbjct: 243 KG 244 >gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1] gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1] Length = 279 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 20/267 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + Sbjct: 13 LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHL 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE G Sbjct: 72 EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------------K 178 LTNEE+AL+N ++ PVNP + LN++QA+ ++ +E +++ + + Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEQVDQNVDEMPLVQGQ 191 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 +++ T+ ++ F +LE L E + P E + + L +F R +L R E L Sbjct: 192 SMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHL 250 Query: 239 LRGIVSTLD-----KFSRQSSRRNNVL 260 LRGI S + K+ + S + + Sbjct: 251 LRGIFSRVQALTSGKWKKALSDKEDQP 277 >gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20] gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 241 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCPLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + ++ L ++ R +L + E+ +L G++S ++ Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231 Query: 248 K 248 K Sbjct: 232 K 232 >gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral taxon 014 str. F0314] Length = 271 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 129/273 (47%), Gaps = 21/273 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 M P L + I+L NIG ARAM L+ L LV Sbjct: 1 MNQLKPALPDFLNNIRIVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTAVPP 60 Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 NP++ E++ + ++ A V+ + R+ + L +A+AD A T+R R + Sbjct: 61 VFDPQNPQNFKLPEESFTLASGAADVLHNARITATLDDALADTTISCALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + + ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + S+F R E++ +LRG +T+ + Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRVNKKD 271 >gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] Length = 289 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 104/249 (41%), Positives = 159/249 (63%), Gaps = 6/249 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68 GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++ Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGAYRKGAYAAAAGATHLL 75 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++ +++EAI DL F+YA TAR R K V P +A R +G+ G++FG E Sbjct: 76 EGAKLYDSVREAIEDLSFVYAATARGRGQMKPVHTPAQALPTTAARHAAGERHGVLFGPE 135 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPA 187 R GL N+++AL++AI++FPVNP + SLN++QAVLL +E + ++E++ PA Sbjct: 136 RTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDVIPFEIEERSPPA 195 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T+ L+F D+LE L++RG+FRP+ KK M +L ++F R L ++V L G+V L Sbjct: 196 TREMTLAFFDFLENELDKRGFFRPLTKKPVMSRNLRNMFHRMSLTEQDVRTLWGVVVRLV 255 Query: 248 KFSRQSSRR 256 + R+ ++ Sbjct: 256 EGPRRDPKK 264 >gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium radiotolerans JCM 2831] Length = 261 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 101/251 (40%), Positives = 153/251 (60%), Gaps = 4/251 (1%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P P +ILV+PQL ENIGM ARAM NF L++LRLVNP++GWP + R + Sbjct: 13 VAPRKVTELPPGIAPAVILVEPQLAENIGMTARAMANFGLSELRLVNPKNGWPKKGVREA 72 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A V+D+ ++ ++ EAIAD ++ ATTAR R K V AP+EA L R GQ Sbjct: 73 ASGATHVLDAAAIYGSVAEAIADCQYVLATTARERGQMKRVFAPEEAMGELVAR--EGQR 130 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FGRER GLTN+E++L++AI++FPV+P FPSLN++QAVLL+ + + S + Sbjct: 131 TAVMFGRERVGLTNDEVSLADAIVTFPVSPDFPSLNLAQAVLLVGYAWRQASGRARLPFT 190 Query: 181 KE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 E + PAT+ L++ LE +L+ G+ P EKK+ + ++ + R L ++V Sbjct: 191 GELLSPPATREALIALFGSLEAALDGAGF-YPPEKKEIIARNMRDMLHRMSLTEQDVRTF 249 Query: 240 RGIVSTLDKFS 250 RG + L + Sbjct: 250 RGALRALTRKG 260 >gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 279 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 15/258 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I++V+ L NIG RAM L +L LV P+ +P ++ +A A + + + Sbjct: 13 LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHL 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE G Sbjct: 72 EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-------------SEK 178 LTNEE+AL+N ++ PVNP + LN++QA+ ++ +E +++ + Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQNVDEMPLVQGQ 191 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 +++ T+ ++ F +LE L E + P E + + L +F R +L R E L Sbjct: 192 SMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHL 250 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRGI S + + ++ Sbjct: 251 LRGIFSRVQALTSGKWKK 268 >gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 109/244 (44%), Gaps = 10/244 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L NIG ARAM L L LVNPR +P ++A + A ++ Sbjct: 25 LDKVRIVLSHTSHPGNIGGAARAMKTMGLDSLYLVNPR-FFPDKEAERRATGALDILHKA 83 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V L EA++ A TAR R+ V ++ A L + V ++FG E G Sbjct: 84 KVCDTLDEALSGTVLAAAVTARQRDLSHEVFDGRQGATKLLDLAQKD-FVALVFGTEMSG 142 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-------SIVSSEKNVKEQN 184 LT E++ II P NP + SLN++ AV +M +E S + Sbjct: 143 LTTLEVSKCQIIIHIPANPEYSSLNLASAVQVMAYELRMACRDLLETPPASPTLTLHGGG 202 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 AT E+ +LE G+ P E K+++ + +F R L +EEV +LRGI+S Sbjct: 203 MAATFDEIELLYAHLEQVAISSGFLDPQE-PKRLMQRMRRLFARARLEKEEVNILRGILS 261 Query: 245 TLDK 248 +K Sbjct: 262 ACEK 265 >gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium OB3b] Length = 275 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 111/260 (42%), Positives = 160/260 (61%), Gaps = 7/260 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV 67 GP I+LV PQL NIGM ARAM NF L+ LRLV PR+GWP+ E + S++A A + Sbjct: 16 GPTIVLVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPTRDPVYREASYSAAAGAAFL 75 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +DS +++ +EAIADL F+YA TAR R K V P A RI +G+ G+IFG Sbjct: 76 LDSAKLYETAREAIADLTFVYAATARERGQMKPVTTPAAALPQTVARIAAGERHGVIFGP 135 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTP 186 ER GL N+E+AL+++I++FPVNP + SLN++QAVLL +E + + + E++ P Sbjct: 136 ERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDAIPFDNSERSPP 195 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT+ LSF D+LE L+ER +FRP KK M +L ++F R L ++V LRG+V L Sbjct: 196 ATREMTLSFFDFLERELDERQFFRPETKKPVMSRNLRNMFHRMGLTEQDVRTLRGMVVRL 255 Query: 247 DKFSRQSSRRNNVLLQKTEK 266 + R+ ++ + + Sbjct: 256 IEGPRREPKKASRRNPSEPE 275 >gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 276 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 31 RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 90 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S L EA++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL Sbjct: 91 VSTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 149 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189 NE + +A+ P NP + SLN++QAV ++ +E E + +++ + T A Sbjct: 150 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQS 209 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV +LRGI + Sbjct: 210 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 265 >gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 3/242 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV+PQ NIG V RAM NF + LRLVNP + AR + A +++ R+ Sbjct: 5 HICVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGARL 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L A+AD + Y TT R + L P +AA G V +FGRE GL Sbjct: 65 FPDLPSALADCNLAYGTTRRFGKYREDFLHPDDAAREFIP-ATQGGRVAWVFGREDKGLE 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 E+ L ++ P + PS+N++Q+V + ++E + ++ K ++T ++ L Sbjct: 124 TSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSRVAAIACGKTAGRKST-SSIATLE 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + ++ +L + G+ P + +L IF R L EV +LRG+ S LD + Q Sbjct: 183 AMYRHMRDTLTDIGFLDP-QNPDHILRSFRRIFGRAGLNDREVRILRGLWSRLDWLNGQR 241 Query: 254 SR 255 Sbjct: 242 RE 243 >gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] Length = 245 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 160/246 (65%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V++ L EAIADL F+ ATTAR R K V AP++A ERI G+ +G++FGRER G Sbjct: 61 KVYATLPEAIADLQFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190 L+N+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LS LE +L G+ P EK++ + ++ + R + ++V RG + L++ + Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239 Query: 251 RQSSRR 256 R++ Sbjct: 240 RKTDEA 245 >gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18] Length = 245 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 6/243 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV Q NIGMV RAM N L LRLVNP A + +A +++S R+F++ Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNP-CQVDHLDAIKFAVSARDLLESARIFTS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD + ATT R+ + P E G + ++FGRE GLT +E Sbjct: 68 LEDALADSEYSVATTRRHGKYRSEICTPPEIVERFAG-CAPGSRLALVFGREDSGLTTDE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL + F SLN+SQAVL+ +E ++ + + VK A L Sbjct: 127 VALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGA---APAPVKAARELAGSSSLEPMY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++E + GY P + M+ + IF R EL EV LRG++S +D + + Sbjct: 184 SHMEKTFLRIGYLNP-QNPDHMMRTMRRIFSRAELDEREVASLRGLLSQIDWACAEFKGK 242 Query: 257 NNV 259 Sbjct: 243 KGA 245 >gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium extorquens PA1] Length = 245 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 2/242 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V++ L EAIADLHF+ ATTAR R K V AP++A ERI G+ +G++FGRER G Sbjct: 61 KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190 L+N+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +LS LE +L G+ P EK++ + ++ + R + ++V RG + L++ + Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239 Query: 251 RQ 252 R+ Sbjct: 240 RK 241 >gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei MSHR346] Length = 338 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 55 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 114 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 174 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 233 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 234 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292 Query: 240 RGIVSTL 246 RGI + Sbjct: 293 RGIAKHI 299 >gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07] Length = 286 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 13/252 (5%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD--GWPSEKARSSS 61 L+ A +LV+ N+G ARA+ + LV PR+ A + + Sbjct: 18 TLRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPGAQSHPDAVAMA 77 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120 + AD V+ RV + EA+A + A TAR R + P+ AA + + S G Sbjct: 78 SGADDVLAGARVVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLASPGAT 137 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178 V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + + Sbjct: 138 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGD 197 Query: 179 ----NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 V PAT ++ +LE +L E G+ P + KK++ L +F R +L E Sbjct: 198 TRVDGVGFVGEPATAEQIDGMFAHLERALVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAE 256 Query: 235 EVFLLRGIVSTL 246 EV +LRGI + Sbjct: 257 EVNILRGIAKRM 268 >gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD1] Length = 274 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 29 RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 88 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S L +A++ +H+ A TAR R LAP+ AA ++ SG ++ ++FG ER GL Sbjct: 89 VSTLGDALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 147 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189 NE + +A+ P NP + SLN++QAV ++ +E E + +++ + T A Sbjct: 148 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPAQQPAADTGTLAQS 207 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV +LRGI + Sbjct: 208 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 263 >gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1] gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1] Length = 253 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 4/237 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A PVI+LV PQLGENIG ARAM NF LT++RLV PRDGWP+ +A +++ AD V++ Sbjct: 17 APPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNPQAGPAASGADIVLEGA 76 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RVF ++ EA AD +YATT R R K V+ P+EAA ++ I+FG ER G Sbjct: 77 RVFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAARGIH---GEPGRSAILFGPERSG 133 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L +++A++ I++ P+NP F SLN++QAV+L+ +E + ++S V + + PA + E Sbjct: 134 LETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSKGIALASPPAV-DLDPPAPQVE 192 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + +L+ L E GY+ P ++ L S+ +P +EV LRG++STL+K Sbjct: 193 LEGLIGHLDRLLAESGYYFPPDRVPATRRTLRSLLTKPAWNAQEVRTLRGVLSTLEK 249 >gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 271 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 20/271 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + I++V+ L NIG RAM L +L LV P+ +P ++ +A A + Sbjct: 1 MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDL 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + + L++AI D H ++ T+AR+R +L + AA + GQ + I+FGR Sbjct: 60 FEHLEIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------ 175 E GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E +++ Sbjct: 120 EDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQEVDEMPL 179 Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 ++++ T+ ++ F +LE L E + P + + + L +F R +L R Sbjct: 180 VQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRM 238 Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260 E LLRGI S + K+ + S + + Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKALSDKEDQP 269 >gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21] gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21] Length = 245 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 6/242 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV Q NIGMV RAM N L+ LRLVNP A + +A ++DS R+F++ Sbjct: 9 VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNP-CQVDHLDAVKFAVSARNLLDSARIFTS 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD F ATT R+ + P E + + ++FGRE GLT +E Sbjct: 68 LEDALADCEFSVATTRRHGKYRNEISTPAEIVERFSA-CAPASRLALVFGREDSGLTTDE 126 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL + F SLN+SQAVL+ +E ++ + K+ A L Sbjct: 127 VALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGV---APAPAKQARELAGSASLEPLY 183 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 ++E S GY P + M+ L IF R EL EV LRG++S +D + + Sbjct: 184 QHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQMDWACAEFKGK 242 Query: 257 NN 258 Sbjct: 243 KG 244 >gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2] gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia multivorans CGD2M] Length = 274 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 8/237 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73 +LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V Sbjct: 29 RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHV 88 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA++ + + A TAR R LAP+ AA ++ SG ++ ++FG ER GL Sbjct: 89 VPTLGEALSGVQWSIALTARTREYGPPRLAPRAAAAHARTQVESG-DIALVFGNERTGLA 147 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189 NE + +A+ P NP + SLN++QAV ++ +E E + +++ + A Sbjct: 148 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGALAQS 207 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 E+ +LE +L + P KK++ L +F R L REEV +LRGI + Sbjct: 208 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 263 >gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710b] gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1710a] Length = 346 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 55 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 114 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 174 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 233 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 234 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292 Query: 240 RGIVSTL 246 RGI + Sbjct: 293 RGIAKHI 299 >gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium erythraeum IMS101] Length = 248 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 8/244 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ + I+LV+ + N+G VAR M N L L LVNP+ +AR + + + Sbjct: 2 LKLESTQIRIVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEI 61 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ + L EA+ H ATT+ +R+ + PK + L G + +IFGR Sbjct: 62 LEKATIVPTLPEALKGCHRAIATTSLDRSLPTHLENPKHSLPWLL-----GYSGALIFGR 116 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNT 185 E GLTN E+ + + + +PSLN++QAV + +E + + ++ ++ ++ Sbjct: 117 EDRGLTNVELNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQLNQENNPQSQANRDL 176 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A+ L ++ LE L + GY P + ++ ++ R +EV +LRG++ Sbjct: 177 EASLDVLEAYYQDLETILLKIGYLYPHTASSR-MEKFRRLYNRAYPSTQEVAMLRGMIRQ 235 Query: 246 LDKF 249 ++ Sbjct: 236 INWA 239 >gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC 73102] Length = 246 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S G I+LV+P NIG +AR M NF L L LVNP+ S +A + +A +I+S Sbjct: 2 SLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIES 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + L EA+ ATT R R+ + P+ A L E + +IFGRE Sbjct: 62 AVLVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEEPE--KPTALIFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NEE+ + + P + + +LN++ AV + +E +++ + + Q A Sbjct: 120 GLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQSAQQFDTQTIT-QTELAPLD 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L + LE L + GY P + + ++ R L EV +LRGI+ ++ Sbjct: 179 VLEGYYQQLESLLLKIGYVYPHTAASR-MGKFRQLYNRAHLKTGEVAMLRGILQQVEWAL 237 Query: 251 RQSSRRNN 258 + N Sbjct: 238 KNQRDGEN 245 >gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024] gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024] Length = 279 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 20/267 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I++V+ L NIG RAM L +L LV P+ +P ++ +A + + + + Sbjct: 13 LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGSQDLFEHL 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L++AI D H ++ T+AR+R +L + AA + GQ + I+FGRE G Sbjct: 72 EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-------------SEK 178 LTNEE+AL+N ++ PVNP + LN++QA+ ++ +E +++ + Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQQNLDQDADEMPLVQGQ 191 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 +++ T+ ++ F +LE L E + P + + + L +F R +L R E L Sbjct: 192 SMQWDEPLVTQKQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHL 250 Query: 239 LRGIVSTLD-----KFSRQSSRRNNVL 260 LRGI S + K+ + S + + Sbjct: 251 LRGIFSRVQALTSGKWKKALSDKEDQP 277 >gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 272 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 21/272 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P+L + I+L NIG ARAM L +L +V NP Sbjct: 1 MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEYPQSFKSPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + S+F R E++ +LRG +TL + + Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270 >gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 266 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + IILV+P N+G AR M N L++L +VNP E+AR + + V+ Sbjct: 9 SSPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVL 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ + L EA+ H I ATT++ R+ + P+ A L + +IFG E Sbjct: 69 ENCSRVATLGEALQGCHRIIATTSKPRHLNTPLETPRAALPWL---LTPNLESALIFGPE 125 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL+N E+ + + P NP + SLN++QAV + +E + + + + E AT Sbjct: 126 DRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQRATENRLEPPLETPPNAT 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L + +LE L + GY P + ++ + R EE+ LLRGI+ ++ Sbjct: 186 FEALEGYYQHLESFLLKIGYLYPHTAAAR-MEKFRQFYHRARPTVEELALLRGIIGHIE 243 >gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13] gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13] Length = 243 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 4/239 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + K +L NIG ARA+ QL L+NP + +P E A + ++ A ++ Sbjct: 6 DIFKNIKFVLSHTSHPGNIGSTARAIKTMGFAQLSLINP-EKFPHEDADALASGAKDLLQ 64 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V S+L+E AD + + TAR R + L+ +E A + E ++FG E Sbjct: 65 HAQVASSLEEVTADCNVLIGFTARKRELTQEHLSIEEIAQKIIE--LKNNKFALLFGNET 122 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL NEEI + + N + SLN+SQAV + +E +N ++ AT Sbjct: 123 SGLKNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNKKEFDVAIKEKKLATF 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E F ++LE +L E G+ ++ K+++ L +F R ++ +EV +LRGI++ + K Sbjct: 183 EEQNGFYEHLESTLNELGFLEKIQ-GKRLMHRLRLMFNRIQMDEDEVNILRGILNQISK 240 >gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira halophila SL1] Length = 249 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 5/250 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S + I+LV NIG ARAM L L LV+P+ +A + +A A V++ Sbjct: 2 SLERTRIVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLER 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R +L A+ + +AR+R + L + AA + G ++ +FGRER Sbjct: 62 ARTAPDLATALTGCRLAFGLSARSRAERQPRLELRPAAESAVAQGGDG-DLAWVFGRERT 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTN E+ + ++ P +P + SLN++Q+V L+ WE + + + PA Sbjct: 121 GLTNAELDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELRMAAAAGGPVQGQAEEPPAAVD 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL---D 247 L F D+LE GY + L +IF R L +EV +LRG++S + Sbjct: 181 TLERFFDHLEEMAGRVGYLD-RHNPALTMRRLRNIFRRAWLTEDEVRMLRGLISHVLNPR 239 Query: 248 KFSRQSSRRN 257 ++ + R+ Sbjct: 240 RWRESNCRKG 249 >gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 278 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 21/269 (7%) Query: 9 QNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 QN+ P I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 6 QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I+ + + L++AI D H ++ T+AR+R +L + AA QN+ I+ Sbjct: 65 QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIV 124 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------- 175 FGRE GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E ++ Sbjct: 125 FGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTTN 184 Query: 176 ------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 ++ ++ T+ ++ F + E L E + P + + + L +F R Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDP-DNPRLLPLRLRRLFGRI 243 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 +L R E LLRG+ S + + S +++ Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272 >gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255] Length = 249 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 146/240 (60%), Gaps = 1/240 (0%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P IIL+ PQ+GENIG ARAM NF + + +V+PRDGWP+ +A+S +A A V+D+V+ Sbjct: 9 SKPSIILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTVQ 68 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +F +A+ +L+F++ATTAR R+ K V++P+ A + G+ VG +FG E GL Sbjct: 69 LFDKTSDALKNLNFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSGL 128 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGE 191 +NE+IA +N ++S PVNP F SLN+SQ VLL+ +E +I + + A+ E Sbjct: 129 SNEDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQTIEIPHEIMALAGTEFASINE 188 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +D E +L+ R +F P K + ML ++F R +L + +V +L GI ++K Sbjct: 189 VQKLVDRSEEALQARNFFWPKNKSESMLLSFRNMFSRLKLTKMDVQILHGIFKAMEKSRN 248 >gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 L NIG ARAM L+ LRLV+P + E+A++ +A A V+D+ ++F + ++AI Sbjct: 14 TSLPANIGSAARAMKTMRLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDSFEQAI 72 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 AD + T+AR R+ S++ P+E + ER G V I+FGRER GLTNEE+ + Sbjct: 73 ADCQLVIGTSARLRHLQNSLIEPRECGKLAVERAEQG-KVAIVFGRERVGLTNEELLKCH 131 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNTPATKGELLSFLD 197 ++FP NP + SLN++ AV L +E + + + E+ L F + Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E ++ G+ R ++ L ++ R EL E+ LLRG++++++K Sbjct: 192 HTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis E264] Length = 338 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 55 ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 114 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 174 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 233 Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 234 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292 Query: 240 RGIVSTL 246 RGI + Sbjct: 293 RGIAKHI 299 >gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02] gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18] gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140] gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19] gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18] gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1] gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1] gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332] gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2] gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090] gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945] gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332] gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62] gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 271 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P L + IIL NIG ARAM L +L +V NP Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] Length = 263 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 109/258 (42%), Positives = 166/258 (64%), Gaps = 11/258 (4%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S P IILV+PQLGENIG ARAM NF L +LRLV PRDGWP+E AR+S+A A ++D Sbjct: 5 PSPSAPAIILVEPQLGENIGAAARAMANFGLRELRLVAPRDGWPNEAARASAALAVEIVD 64 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R++ +L A+ADLH+I ATTAR+R K VLAP A + ER + G++FG+ER Sbjct: 65 GARLYPDLATAVADLHYIVATTARSRFLAKPVLAPDTAVTEIAERQAADLRCGVLFGKER 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSEKNVK---- 181 GL N ++A+++AI++ PV+P F SLN++Q+VLL +E + +S+ + + Sbjct: 125 TGLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRKLVNPHSLGRTLPDAPLGAG 184 Query: 182 ---EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + + PA +GEL++F ++LE L+ G+ P EK++ M++++ ++F R +EV Sbjct: 185 HRFKASRPAERGELIAFYEHLEGELDHCGFLFPPEKRETMVNNIRTMFARMAPTEQEVRT 244 Query: 239 LRGIVSTLDKFSRQSSRR 256 LRG+V+ L + Q S + Sbjct: 245 LRGMVAILRRGPWQGSNK 262 >gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 305] Length = 303 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679] gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679] Length = 271 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P L + IIL NIG ARAM L +L +V NP Sbjct: 1 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei NCTC 13177] Length = 303 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 14] gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 112] gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 406e] gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1655] Length = 301 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12J] Length = 282 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 14/258 (5%) Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55 TP P+ L+ A +LV+ N+G ARA+ + LV PR D Sbjct: 7 TPADPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHA 66 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A + ++ AD V+ + RV ++ EA+A A TAR R + P+ AA + + Sbjct: 67 DAVAMASGADDVLAAARVVDDIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALL 126 Query: 116 F-SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + Sbjct: 127 AAPDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 186 Query: 175 SSE------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 + + V PAT ++ ++LE L E G+ P + KK++ L +F R Sbjct: 187 GTGTGDTRMEGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 245 Query: 229 PELMREEVFLLRGIVSTL 246 +L EEV +LRGI + Sbjct: 246 TQLETEEVNILRGIAKRM 263 >gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei S13] Length = 309 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LA + AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLASRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia vietnamiensis G4] Length = 276 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 19/262 (7%) Query: 2 TPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52 P P ++A +LV+P N+G ARA+ ++L LV PR Sbjct: 6 NPAVPSEPDAASSLPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPH 65 Query: 53 --PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110 +A + ++ AD V+ V L +A++ +H+ A TAR R LAP+ AA Sbjct: 66 VQSDPEAIAMASGADDVLAGAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAAQ 125 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ +G ++ ++FG ER GL NE + +A+ P NP + SLN++QA+ ++ +E Sbjct: 126 ARAQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRV 184 Query: 171 NSIV------SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224 + S+ E T A E+ +LE +L + P KK++ L Sbjct: 185 AFLEHGGAQSQSQPVQAEVGTLAQSDEIERMYGHLERALIALDFLDP-RNPKKLMPRLRR 243 Query: 225 IFIRPELMREEVFLLRGIVSTL 246 +F R L REEV +LRG+ + Sbjct: 244 LFARTGLEREEVNILRGVAKHI 265 >gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] Length = 278 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 21/269 (7%) Query: 9 QNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 QN+ P I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 6 QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I+ + + L++AI D H ++ T+AR+R +L + AA + QN+ I+ Sbjct: 65 QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIV 124 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------- 175 FGRE GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E ++ Sbjct: 125 FGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTSN 184 Query: 176 ------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 ++ ++ T+ ++ F + E L E + P + L +F R Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDPNNPRLLPLRLR-RLFGRI 243 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 +L R E LLRG+ S + + S +++ Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272 >gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 23344] gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei JHU] Length = 306 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 23 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 82 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 83 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 142 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 201 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 202 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260 Query: 240 RGIVSTL 246 RGI + Sbjct: 261 RGIAKHI 267 >gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 7894] gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei BCC215] gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei SAVP1] gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10229] gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei NCTC 10247] gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei FMH] gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei 2002721280] gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei ATCC 10399] gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei GB8 horse 4] gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei PRL-20] Length = 303 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] Length = 271 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 112/249 (44%), Positives = 158/249 (63%), Gaps = 6/249 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSAN 63 +N A GP IILV PQL NIGM ARAM NF L+ LRLV PR+GWP E +A +++A Sbjct: 11 ENVAGGPAIILVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPREGRFKDEAEAAAAG 70 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++ S ++++ L EA+ADL+FI+ATTAR R K V P +A R+ G+ GI Sbjct: 71 AVHLLASAKLYATLPEAVADLNFIWATTARERGQCKRVATPAQAMPENAARLALGERQGI 130 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKE 182 +FG ER GL N++IAL++AI++FPVNP + SLN++QAVLL +E + + + + + Sbjct: 131 LFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYEWFQAAHNAEAPFQLAD 190 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PA + +LSF DYLE L+ G+FRP K M +L +IF R L ++V LRG+ Sbjct: 191 YSPPAPREMILSFFDYLEGELDRSGFFRPAGKAPVMRRNLRNIFHRMHLSEQDVRTLRGM 250 Query: 243 VSTLDKFSR 251 V L + R Sbjct: 251 VVRLVEGPR 259 >gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas suwonensis 11-1] Length = 267 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 6/251 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV Q NIG ARAM L++L LV+P + + A SA A+ V+DS V+ Sbjct: 19 IRIVLVGTQHPGNIGAAARAMKTMGLSRLVLVSP-EKPLDDTAYRRSAGAEDVLDSAPVY 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR+R L P AA + G V ++FGRER GLTN Sbjct: 78 ATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAEG-PVALVFGRERTGLTN 136 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191 EE+ L +A + P +P F SLN++ AV ++ +E + + + PA+ + Sbjct: 137 EELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELRLAVLAADPAPAEPPPPDAQPASHEQ 196 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F L +L++ + + L +F+R L EV LLRG+++ + +R Sbjct: 197 VEGFFAQLADTLDDIDF-HKGRSPDSAMRKLRRLFLRTGLTVHEVRLLRGVLADAQRMAR 255 Query: 252 QSSRRNNVLLQ 262 ++ L Sbjct: 256 LANEAGKGPLS 266 >gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 306 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 23 ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 82 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 83 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 142 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 201 Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 202 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260 Query: 240 RGIVSTL 246 RGI + Sbjct: 261 RGIAKHI 267 >gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pasteur 52237] Length = 309 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis EO147] gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia oklahomensis C6786] Length = 291 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 18/260 (6%) Query: 3 PYAPQLQNSAKGPV-----------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 P+AP + P +LV+P N+G ARA+ ++L LV PR Sbjct: 10 PFAPSAGAAPSRPTRSARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 69 Query: 52 W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 +A + ++ AD V+ S V L +A+ + + A TAR+R LAP+ AA Sbjct: 70 HVQSDPEALAMASGADDVLASAHVVPTLADALNGVQWSIALTARSREYGPPRLAPRAAAA 129 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ +G ++ ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E Sbjct: 130 SARRQLQTG-DIALVFGNERTGLSNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188 Query: 170 ENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 + + T A E+ +LE +L + P KK++ L +F Sbjct: 189 VALLEDDASVMPRDAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLF 247 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 248 ARTGLEREEVNILRGIAKHI 267 >gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 272 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 21/272 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P L IIL NIG ARAM L +L +V NP Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEYPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + S+F R E++ +LRG +TL + + Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270 >gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii CS-505] Length = 245 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +++ + +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++ Sbjct: 5 KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ R+ NL A+A AT R+ N + +P+ A L S + G+IFGRE Sbjct: 65 ENARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLAE--SEKPAGLIFGRE 122 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLTN+EI + ++S P +P + SLN++ AV + +E S+++ E AT Sbjct: 123 DRGLTNQEINYAQKLVSIPTSPEYTSLNLATAVSICCYEL-SQSLMTMEPGKMPTRDIAT 181 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L S+ LE L GY P + ++ ++ R EL EV +LRGI+ + Sbjct: 182 LDVLESYYQELESLLLSIGYLYPHTTSSR-MEKFRHLYNRSELTTTEVAMLRGILKQVQW 240 Query: 249 FSRQ 252 + Sbjct: 241 AIKN 244 >gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 276 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 9/244 (3%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++LV P N+G +AR M N Q LV+P+ +A +++ + ++ Sbjct: 9 PEQLAQVRLVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTAVHGADLL 68 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R L EA+ ++ TT R++ + +P++ + + ++FG Sbjct: 69 HQARKVQTLPEALQGCVQVFGTTGRSQTYPPEWQIQSPRQ----AFPALLAAGPAALVFG 124 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQN 184 E GL+NEE+AL + I P + +PSLN++QAV + +E S + Sbjct: 125 PEDRGLSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELYTLVCQSPSPAPPMPSPQ 184 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A L F D+LE L + GY P ++KML ++F R L EV LLRGI+ Sbjct: 185 RLAPFELLEGFFDHLEALLLQIGYLHPHTARRKML-KFRALFQRAGLTVAEVALLRGILR 243 Query: 245 TLDK 248 L Sbjct: 244 QLQW 247 >gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 266 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 4/247 (1%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ + IILV+P N+G AR M N L++L +VNP +E+AR Sbjct: 1 MSVDENNPSSPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILAEEARRM 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + V+++ + L EA+ H I ATT++ R+ + P+ A L + Sbjct: 61 AVHGIEVLENCSQVATLGEALQGCHRIIATTSKPRHLNTPLETPRTALPWL---LTPNLE 117 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +IFG E GL+N E+ + + P NP + SLN++QAV + +E + + + + Sbjct: 118 SALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQMATENRLEPP 177 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 E AT L + +LE L + GY P + ++ + R EE+ LLR Sbjct: 178 LEMLPNATFEALEGYYQHLESFLLKIGYLYPHTAAAR-MEKFRQFYHRARPTVEELALLR 236 Query: 241 GIVSTLD 247 GI+ ++ Sbjct: 237 GIIGHIE 243 >gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205] gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205] Length = 281 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 19/270 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 8 DVSKQLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLILVAPK-TYPHPDIDALAAGAQD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +I+ +++ L++AI D H ++ T+AR+R +L + AA + QN+ I+FG Sbjct: 67 LIEKIQIVDTLEQAIEDCHLVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFG 126 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-- 184 RE GLTNEE+AL+N ++ PVNP + LN++QA+ ++ +E ++ +++N + + Sbjct: 127 REDRGLTNEELALANYHLTIPVNPSYGVLNVAQAIQVVCYELRMAALELNQQNTDQTDPQ 186 Query: 185 ---------------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 T+ ++ F +LE L E + P + L +F R Sbjct: 187 EHMQLKQNQSMQWDEPLVTQKQMEEFYPHLEKMLTEIEFLDPNNPRLLPLRLR-RLFGRI 245 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259 +L R E LLRGI S + + S ++ Sbjct: 246 QLDRMEYHLLRGIFSRVQALANGSWKKTQT 275 >gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei Pakistan 9] Length = 309 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei B7210] gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106a] gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 1106b] Length = 311 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei 668] Length = 303 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E V Sbjct: 139 LVFGNERTGLSNEHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257 Query: 240 RGIVSTL 246 RGI + Sbjct: 258 RGIAKHI 264 >gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 287 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 13/251 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD--GWPSEKARSSSA 62 L+ A +LV+ N+G ARA+ + LV PR+ A + ++ Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFCESGSYVLVRPREPGAQSHPDAVAMAS 78 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 AD V+ RV ++ EA+A + A TAR R + P+ AA + + + G V Sbjct: 79 GADDVLADARVVDDVGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATV 138 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178 +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + + Sbjct: 139 AFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198 Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 V PAT ++ +LE L E G+ P + KK++ L +F R +L EE Sbjct: 199 RVDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257 Query: 236 VFLLRGIVSTL 246 V +LRGI + Sbjct: 258 VNILRGIAKRM 268 >gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 272 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 M P L I+L NIG ARAM L +L +V P Sbjct: 1 MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFDPEYPQSFKLPEESFILASGAADVLHNAAIVATLDEALADTAIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + S+F R E++ +LRG +TL + + Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270 >gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC 14685] Length = 330 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 60 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 119 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 120 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 179 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 180 QTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 239 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 240 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 297 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 298 MQSLFGRANTQTEDIDILRGFFNTV 322 >gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11] gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae SK-93-1035] gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 271 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P L + IIL NIG ARAM L +L +V NP Sbjct: 1 MTALKPALPDYLGNIRIILTRTGHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ L ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava NJ9703] Length = 304 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 94 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 153 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESLMNDIGFFN-RRNGERLMRR 271 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTV 296 >gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus halophilus Nc4] Length = 242 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 5/239 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S I+LV NIG ARAM L++L LVNP +P +A + ++ AD ++ Sbjct: 2 SLAKVRIVLVGTTHPGNIGAAARAMHTMGLSRLYLVNP-ARFPCAEATARASGADELLAQ 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + ++L +AIA ++ +AR+RN L + + + G+ V I+FGRE Sbjct: 61 AEICTSLPQAIAGCRMVFGLSARSRNISWPALDARACGALTVQEALEGE-VAIVFGREHS 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188 GL+N E+ + + P NP + SLN++ AV +M +E ++ + ++ PA+ Sbjct: 120 GLSNIELDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVRMAAMAGASPPARRPTESPPAS 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E+ F +LE +L E G+ P K ++ L +F R L EV +LRGI++ Sbjct: 180 VDEVEGFFQHLEQTLIEIGFLNP-SNPKLLMRRLRRLFFRAHLEIREVNILRGILTAAQ 237 >gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii C-113] Length = 246 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+ NIG ARAM L +L LVNPR +P +A + ++ AD ++ Sbjct: 3 LAKVRIVLVETTHPGNIGAAARAMRTMGLHRLYLVNPR-RFPCAEATAMASGADELLVQA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V ++L +AIA ++ +AR+RN VL + + ++ + G+ V I+FGRE G Sbjct: 62 KVCTSLAQAIAGCQKVFGLSARSRNISWPVLNTRASGALVVQEALKGE-VAIVFGRENSG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+N E+ N + P NP + SLN++ AV +M +E S+ ++ E ++ A+ E Sbjct: 121 LSNFELDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIRMASMTDDFRHSGESSS-ASIDE 179 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F +LE +L + + K ++ L +F R L E+ +LRGI++ K ++ Sbjct: 180 IEGFFSHLEQTLIKIDFLNS-SNPKFLMRRLRRLFFRAHLNTPEINILRGILTAAQKKAQ 238 >gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium populi BJ001] Length = 245 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VF+ L EA+ DLH + ATTAR R K V AP+EA +RI G+ VG++FGRER G Sbjct: 61 KVFATLAEAVGDLHGLLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKG 190 L+N+E++L++AI++FPV FPSLN++QAVLLM +E + +++ + E + PAT+ Sbjct: 121 LSNDEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGELLSPPATRE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 LLS LE +L G+ P EK++ + ++ + R + ++V RG + L + Sbjct: 181 ALLSLFASLEETLAGAGF-YPPEKREIIARNMRDMLHRMAMTEQDVRTFRGALRALHRRG 239 Query: 251 RQSSRR 256 ++ Sbjct: 240 PKTDEA 245 >gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi Nb-255] Length = 403 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 108/248 (43%), Positives = 165/248 (66%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V + Sbjct: 15 GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 NEE+A+++ II++PVNP F SLN++QAVLL+ +E + + E++ A++ ++ Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLIGYEWFKLVTRGELPFAMPERSERASQHQM 194 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+ Sbjct: 195 QAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253 Query: 253 SSRRNNVL 260 + VL Sbjct: 254 GPAKGGVL 261 >gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 242 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 L NIG ARAM L+ LRLV P + E+A++ SA A V+ + ++F + ++AI Sbjct: 14 TSLPANIGSAARAMKTMGLSNLRLVAPLNPI-DEQAQALSAGARDVLANAQIFDSFEQAI 72 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 AD + T+AR R+ S++ P++ + ER G V I+FGRER GLTNEE+ + Sbjct: 73 ADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRERVGLTNEELLKCH 131 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNTPATKGELLSFLD 197 ++FP NP + SLN++ AV L +E + + + E+ L F + Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E ++ + R ++ L ++ R EL E+ LLRG++++++K Sbjct: 192 HTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238 >gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 271 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 21/274 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I++V+ L NIG RAM L+QL LV P+ +P + +A A +++ + Sbjct: 1 MTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPK-TYPHPDIDALAAGAQDLVEKI 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERW 130 ++ L++AI D H ++ T+AR+R +L + AA + ++ I Q + I+FGRE Sbjct: 60 KIVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDR 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----------- 179 GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E ++ + + Sbjct: 120 GLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQV 179 Query: 180 -----VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + ++ F +LE L + + P + + + L +F R +L R Sbjct: 180 TEKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDP-QNPRLLPLRLRRLFGRAQLDRM 238 Query: 235 EVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 E LLRGI S + S ++ L K E+S+ Sbjct: 239 EYHLLRGIFSRVQALSHGKWKK--TALDKEEQSD 270 >gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114] gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114] Length = 295 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 25 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENPP 84 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 85 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 144 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 145 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 204 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 205 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 262 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 263 MQSLFGRANTQTEDIDILRGFFNTV 287 >gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii 12D] gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA] Length = 294 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 14/258 (5%) Query: 2 TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55 TP P L+ A +LV+ N+G ARA+ + LV PR D Sbjct: 19 TPADPDTLRQRAVRCRFVLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHA 78 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A + ++ AD V+ RV ++ EA+A A TAR R + P++AA + + Sbjct: 79 DAVAMASGADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAALL 138 Query: 116 F-SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V +FG ER+GL NE + + + P NP + SLN+SQAV L+ +E + Sbjct: 139 AAPDTTVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 198 Query: 175 SSEK------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228 + V PAT ++ ++LE L E G+ P + KK++ L +F R Sbjct: 199 GTGTGDTRMDGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 257 Query: 229 PELMREEVFLLRGIVSTL 246 +L EEV +LRGI + Sbjct: 258 TQLEAEEVNILRGIAKRM 275 >gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46] gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp. 4-46] Length = 250 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 100/237 (42%), Positives = 152/237 (64%), Gaps = 2/237 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +ILV+PQL ENIGM ARAM NF L++LRLV P+ GWP + R +++ A V+D + Sbjct: 8 PAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + EAI DLH + ATTAR R K V+ P EA + R +G+ VGI+FGRER GL+N Sbjct: 68 ATVAEAIGDLHHVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRERVGLSN 127 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193 +E++L++AI++FPV+P SLN++Q+VLL+ +E S +++ E ++ PA + LL Sbjct: 128 DEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRRASGLATLPFDGEMRSPPAPREALL 187 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 S + LE +L+ GYF P EK+ M+ +L I R + +++ L G + L + + Sbjct: 188 SLFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDLRSLHGALRALTRRA 243 >gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102] gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102] Length = 271 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTSEKPALPAYLDNIRIILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+E L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14] Length = 275 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 5/251 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +A +LV Q N+G ARA+ L +L LV P + E+A SA A+ V+ Sbjct: 24 PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 82 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L EA+AD + TAR R P +AA + G V ++FGRER Sbjct: 83 DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 142 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP 186 GLTNEE+ L +A + P +P F SLN++ AV ++ +E + + E + Sbjct: 143 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 202 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ ++ SF L +L+E + + + L +F+R E +EV LLRGI++ Sbjct: 203 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 261 Query: 247 DKFSRQSSRRN 257 + +R + + Sbjct: 262 QRMARLAQAGS 272 >gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 248 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 145/249 (58%), Gaps = 8/249 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + +A PVI+LV PQLGENIG ARAM NF LT+LRLV+PRDGWP+ A +SA AD V Sbjct: 1 MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + RVF L EA+AD IYATT R R K+VL P+ AA ++ + +FG Sbjct: 61 LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQP---GRSAYVFGP 117 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKE 182 ER GL +++AL++AI++ P+NP F SLN++QAV+L+ +E ++ + + Sbjct: 118 ERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKHVPGDGHVALASPPEVP 177 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 + PA GEL + + L++ GYF P E++ L L + + ++ ++ GI Sbjct: 178 LDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGI 237 Query: 243 VSTLDKFSR 251 + L + R Sbjct: 238 IVALGRAPR 246 >gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7335] Length = 304 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 118/297 (39%), Gaps = 45/297 (15%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P Q I+LV P N+G VAR M NF L+QL LV+P+ + +A + +AD Sbjct: 9 PPTQADLTQIRIVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGAEALQMAVHAD 68 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGI 123 V+ + ++ + +A+A + ATTAR R + P+ A L + + Sbjct: 69 DVLKTAQIVPTIPKALAGCEYAIATTARTRGFNVPLDPPETALPNLLTSNPQQPIRQTAL 128 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME------------- 170 +FG E GL+N+E+ + + P + + +LN++QAV + +E Sbjct: 129 LFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSRVARTFCPNSTLSS 188 Query: 171 -----------------------------NSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 ++ + E A E+ + ++LE Sbjct: 189 YPIESSLENKTPALQNTPSSAKQSESSLSSTANAPIIKEHEDQPRANLEEIERYYEHLES 248 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 L + GY P + + + + R EV LLRG++ ++ S +R Sbjct: 249 LLLQVGYLLPHTSASR-MRKIRQLLHRASPTSHEVALLRGMIRQIEWALSHSKQRQT 304 >gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 5/251 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A +LV Q N+G ARA+ L +L LV P + E+A SA A+ V+ Sbjct: 5 PVATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 63 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L EA+AD + TAR R P +AA + G V ++FGRER Sbjct: 64 DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 123 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTP 186 GLTNEE+ L +A + P +P F SLN++ AV ++ +E + + E + Sbjct: 124 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPVVESGTGVREPV 183 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ ++ SF L +L+E + + + L +F+R E +EV LLRGI++ Sbjct: 184 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 242 Query: 247 DKFSRQSSRRN 257 + +R + N Sbjct: 243 QRMARLAQAGN 253 >gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis MSMB43] Length = 299 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 7/260 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +L++P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARAARGGFTSTRFVLIEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + TAR+R LAP+ AA +++ +G ++ Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLGLTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAAPP 198 Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 T A E+ +LE +L + P KK++ L +F R + REEV ++ Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMSRLRRLFARTGIEREEVNIV 257 Query: 240 RGIVSTLDKFSRQSSRRNNV 259 RGI + + + R V Sbjct: 258 RGIAKHILLKAGGADARAGV 277 >gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia cenocepacia J2315] Length = 244 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSN 76 LV+P N+G ARA+ ++L LV PR +A + ++ AD V+ S V S Sbjct: 2 LVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVST 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA++ +H+ A TAR R LAP+ AA + ++ +G ++ ++FG ER GL NE Sbjct: 62 LGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANEH 120 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKGEL 192 + +A+ P NP + SLN++QAV ++ +E E + S + E T A E+ Sbjct: 121 VEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPPAEAGTLAQSDEI 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 +LE +L + P KK++ L +F R L REEV +LRG+ + Sbjct: 181 ERMYVHLEHALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVAKHI 233 >gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046] gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046] Length = 282 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 136/276 (49%), Gaps = 17/276 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 8 AVSAHLSHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125 +I+ + + L +AI D H ++ T+AR+R +L + AA ++ + Q+V ++F Sbjct: 67 LIEQIEIVETLADAIKDCHLVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQQDVAVVF 126 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------- 177 GRE GLTNEE+A++N ++ PVN + LN++QA+ ++ +E ++ + E Sbjct: 127 GREDRGLTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLAAVESGKDETAT 186 Query: 178 ------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 ++++ T ++ F ++E L E + P + + L +F R +L Sbjct: 187 MPVTDTESMQWDEPLVTHEQMEQFYPHIEKMLAEIEFLDPK-NPRLLPLRLRRLFGRIQL 245 Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267 R E LLRGI S + + + +++N + + + Sbjct: 246 DRMEYHLLRGIFSRVQALNNGTWKKSNTDQTEDQSN 281 >gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18] gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491] gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] Length = 292 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 22 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 81 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 82 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 141 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 142 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 201 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 202 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 259 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 260 MQSLFGRANTQTEDIDILRGFFNTV 284 >gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15] Length = 259 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 13/240 (5%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 LV+ N+G ARA+ + LV PR D A + ++ AD V+ RV Sbjct: 2 LVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADARV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132 + EA+A + A TAR R + P+ AA + + + G V +FG ER+GL Sbjct: 62 VDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYGL 121 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQNTP 186 NE + + + P NP + SLN+SQAV L+ +E + + V P Sbjct: 122 PNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAETGTGDTRVDGVGFVGEP 181 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT ++ +LE L E G+ P + KK++ L +F R +L EEV +LRGI + Sbjct: 182 ATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMSRLRRLFARTQLEAEEVNILRGIAKRM 240 >gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina MBIC11017] Length = 250 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 15/252 (5%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + I+LV+P N+G +AR M N L QL LV P +A+ S +A V+ Sbjct: 3 EPRLASIKIVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + L EA+ + ATTAR R APK+ + E +IFG E Sbjct: 63 YQAKTVQTLSEALVGCQRVVATTARQRRLQVVTQAPKQILPWILE-----GEAALIFGPE 117 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------ 182 GL+NEE+ + A + P + + +LN++QAV + +E + ++ + E Sbjct: 118 DRGLSNEELYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQCLLMGLDNRPTEPRIAES 177 Query: 183 ---QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 Q A ++ +F LE++L + GY P + + L +F R +L +E+ +L Sbjct: 178 DHLQVELAPFQQMEAFYQALEVALLDIGYLHPHTATAR-MQKLRQLFNRSQLSTQELAML 236 Query: 240 RGIVSTLDKFSR 251 RG++ + ++ Sbjct: 237 RGMIRQVHWKTQ 248 >gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 287 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 13/251 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62 L+ A +LV+ N+G ARA+ + LV PR D A + ++ Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 AD V+ RV ++ EA+A A TAR R + P+ A + + S V Sbjct: 79 GADDVLAGARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVVAEEVAALLASPDATV 138 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178 +FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + + Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198 Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 V PAT ++ +LE L E G+ P + KK++ L +F R +L EE Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257 Query: 236 VFLLRGIVSTL 246 V +LRGI + Sbjct: 258 VNILRGIAKRM 268 >gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis TXDOH] Length = 306 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 23 ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 82 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 AD V+ S V L +A+ + + A TAR+R LAP+ AA +++ +G ++ Sbjct: 83 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 142 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 201 Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 A E+ +LE +L + P KK++ L +F R L REEV ++ Sbjct: 202 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260 Query: 240 RGIVSTL 246 RGI + Sbjct: 261 RGIAKHI 267 >gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A] Length = 407 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 108/248 (43%), Positives = 165/248 (66%), Gaps = 2/248 (0%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GP +IL++PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ V + Sbjct: 15 GPTVILIEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + EA+AD ++ATTAR + K V+AP+ AA+ +I +G +VGI+FGRER GL Sbjct: 75 FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192 NEE+A+++ II++PVNP F SLN++QAVLLM +E + + E++ A++ ++ Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRGELPFAMPERSERASQHQM 194 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + R+ Sbjct: 195 QAFFDNLVSELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253 Query: 253 SSRRNNVL 260 + VL Sbjct: 254 GPAKGGVL 261 >gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. HL-EbGR7] Length = 247 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N I+L+ NIG ARAM L+ LRLV+P +PS +A + ++ AD ++ Sbjct: 2 NVLDRLRIVLIQTSHPGNIGASARAMKTMGLSDLRLVSP-VRYPSAEATAMASGADDLLA 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V+ +L EA+ + T+AR R+ L P+EAA L E + V ++FGRE+ Sbjct: 61 GTPVYEDLDEALTGCRLVMGTSARQRSLRWPQLNPREAAAALIEAAAQ-RPVALLFGREQ 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQ 183 GL+NEE+ +++++ P N + SLN++ AV ++ +E ++ ++ + Sbjct: 120 SGLSNEELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELRMAALERQAPAVDTSADLAPE 179 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + PA+ L F +LE +L + P + +L L ++ R EV +LRGI+ Sbjct: 180 DQPASAEALEDFYAHLERALIHLDFLDP-NNPRHLLRRLRRLYGRAVPTVSEVNILRGIL 238 Query: 244 STLDKFSRQ 252 + +K R+ Sbjct: 239 TAAEKGPRR 247 >gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 357 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 139/236 (58%), Gaps = 4/236 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PVI+LV PQLGENIG ARAM NF LT++RLV+PRDGWP+ A ++A AD V+D Sbjct: 120 PTPTPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAGADVVLDG 179 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V+ L +A+AD +YATT R R K V+ P+EAA E + +FG ER Sbjct: 180 AQVYETLADAVADCAHVYATTVRKRGVTKPVVTPEEAA---REIHGATGRSAFVFGPERS 236 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL +++AL+ I++ P+NP F SLN++QAV+L +E + + ++ + V + PA + Sbjct: 237 GLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQATLA-QPTVTDLGEPAPQD 295 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL + E LE GYF P ++ L ++ +P EV LRG++S L Sbjct: 296 ELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 351 >gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 278 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 5/263 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P+I+LV PQL ENIG ARAM N L LRLV PRDGWP E+A S+ A ++D+ Sbjct: 14 PGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQRILDA 73 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRER 129 V + +A+AD H ++AT R R+ V + AA L + ++FG ER Sbjct: 74 ATVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVLFGPER 133 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187 GL N+++A ++ ++ +P+NP SLN++QAV+++ +E ++ + + + A Sbjct: 134 AGLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWNAAVDRTPPRQLMTNETHVA 193 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 TKGEL +FL+ L L+ G+ + K+ M+ +L F R E+ +E+ L G+V+ L Sbjct: 194 TKGELETFLNRLVSELDASGFLDNLPKRPGMVRNLRHWFQRGEVTEQELRTLHGVVTELS 253 Query: 248 --KFSRQSSRRNNVLLQKTEKSE 268 + R + L ++ E Sbjct: 254 RGRMRRGRPEAQDPALPWAQEQE 276 >gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 256 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 5/251 (1%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +A +LV Q N+G ARA+ L +L LV P + E+A SA A+ V+ Sbjct: 5 PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 63 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L EA+AD + TAR R P +AA + G V ++FGRER Sbjct: 64 DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 123 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP 186 GLTNEE+ L +A + P +P F SLN++ AV ++ +E + + E + Sbjct: 124 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 183 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ ++ SF L +L+E + + + L +F+R E +EV LLRGI++ Sbjct: 184 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 242 Query: 247 DKFSRQSSRRN 257 + +R + + Sbjct: 243 QRMARLAQAGS 253 >gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134] Length = 314 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 14/267 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVR 72 +LV+ N+G VARA+ L LV+PR+ A + ++ AD V+ Sbjct: 49 VRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVREHPDAVAMASGADDVLAGAV 108 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERW 130 + +++ A+ A TAR R L P++AA E + + G + +FG ER+ Sbjct: 109 IVDSIEAALEGATQTVAMTARQREFGPPRLLPRDAAARGAESLAARAGDEIAFVFGNERY 168 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQN 184 GL N+ + A+ P NP++ SLN++QAV L+ +E + ++ N+ Sbjct: 169 GLPNDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMRLALLDRAQAAPDDSGNIGYAG 228 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PAT ++ S +L+ LE G+ P +K++ L + R L REEV +LRGI Sbjct: 229 EPATAEQVESMFGHLQQGLEAIGFLDPA-NPRKLMTRLRRLLARAGLEREEVNILRGIAK 287 Query: 245 TL---DKFSRQSSRRNNVLLQKTEKSE 268 + + R ++ ++ Sbjct: 288 HMLIAVRGGRTKPEQSGPSTPARQEEH 314 >gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 34 MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L +A+AD A T+R R + Sbjct: 94 VFNPDDVQSFALPEESFILASGAADVLENATIAASLDKALADTTIACALTSRRREITAPL 153 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 271 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTV 296 >gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] Length = 215 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 5/216 (2%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M L QL LV+P+ E+ + +A A + + ++ L+EA+ D + ++AR+ Sbjct: 1 MKVMGLNQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGTLEEAVEDCGLVVGSSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +L P+E V ++FGRER GLTNEE+ + + P NP + S Sbjct: 60 RTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSS 118 Query: 155 LNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212 LN++ AV + +E + S+ + E EL F ++LE + E + Sbjct: 119 LNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEMFFEHLEKVMVETQFINK- 177 Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ ++++ L +F R +E+ +LRG++++++K Sbjct: 178 EQPGQVMNKLRRLFSRARPETQEINILRGVLTSIEK 213 >gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58] gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58] gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013] gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis alpha710] gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein [Neisseria meningitidis H44/76] gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE 2594] gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis N1568] gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis OX99.30304] gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M6190] gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M13399] gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M0579] gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis ES14902] gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis CU385] gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis 961-5945] gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240013] gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis G2136] gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis H44/76] gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240149] gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M04-240196] gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis NZ-05/33] Length = 271 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2] gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 3/243 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++LV+PQ NIG V RAM NF +QL LVNP + + AR + +A +++ Sbjct: 4 QQITVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSALPILEKAV 63 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V L +A+ + H + TT R + L+P++ L E + Q ++ GRE GL Sbjct: 64 VVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQ-CALVMGREDHGL 122 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 E+ L ++ P + S+N+S A L++++ + N PAT EL Sbjct: 123 YTSELELCQRFVTIPTENAYGSMNLSHATALLLYQASMALGRTIPLNTG-STPPATSHEL 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D++ SL + + + +L IF R L R EV ++RG++ +D + Sbjct: 182 AGMYDHMTKSLCDIDFLN-TQNPDHLLRTFRRIFGRAGLDRREVAIIRGLMGRIDWTESE 240 Query: 253 SSR 255 + Sbjct: 241 RKK 243 >gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha275] Length = 271 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp. K90mix] Length = 245 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 8/246 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ ++LV NIG ARAM +T L LV P + +P A + ++ AD + Sbjct: 1 MEQCLGRVRVVLVGTTHPGNIGSAARAMKAMGITDLVLVAP-ERFPHADATALASGADDL 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + RV +L A++D ++ T+AR R + VL P AA + + G V ++FGR Sbjct: 60 LAGARVVDDLAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQAAEG-PVALVFGR 118 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-----SSEKNVKE 182 E GLTN E+ NA + P P F SLN++ +V +M + ++ ++ + Sbjct: 119 EHSGLTNAELDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALRMAALAGESARTAAEPEDA 178 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 ++ A++ E+ + E +L P E + ++ L +++R L EV +LRGI Sbjct: 179 RDPLASQAEMEGLFSHFEKALTTIEVLDP-ENPRHLMRRLRHLYMRAGLSASEVRMLRGI 237 Query: 243 VSTLDK 248 ++ ++ Sbjct: 238 LTHTER 243 >gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 267 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 14/255 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I+V P N+G ARA+ +L LV+PR D +A + ++ A V+++ R+ Sbjct: 9 RFIMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARI 68 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131 + L+EA+A + +A TAR R+ ++AA + E + V I+ G ER G Sbjct: 69 CATLEEALAPVTLAFALTARVRDLGPPPCDIRQAATLSREHLDQKPDGCVAIVLGTERSG 128 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKE 182 LTNE+I L I P NP + SLN++QA+ L WE + ++ Sbjct: 129 LTNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELRYALLEAAGATLLPPSKAHQPDP 188 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PA+ + + L + E +L + P KK++ + +F R EL R+E+ ++RG+ Sbjct: 189 GAQPASSEAVQAMLAHWEQALVAVEFLNPAH-PKKLMPRMRHLFTRAELSRDEIDMMRGV 247 Query: 243 VSTLDKFSRQSSRRN 257 + + + ++ R Sbjct: 248 CTAMLDIAGRAGPRQ 262 >gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34] gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus metallidurans CH34] Length = 289 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 18/260 (6%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ----LRLVNPRDG--WPSEKA 57 A L + ++LV+ N+G VARA+ L LV+PR+ A Sbjct: 17 AASDLSDIFAHVRVVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDA 76 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RI 115 + ++ AD V+ S + +++ A+A F A TAR R L P+ A Sbjct: 77 VAMASGADDVLASATIVDSIEAALAGTAFTVAMTARQREFGPPRLLPRAAVAKARSVLEA 136 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V +FG ER+GL N+ + +A+ P NP++ SLN++QAV L+ +E + + Sbjct: 137 DPATTVAFVFGNERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYEMRLALLEA 196 Query: 176 SEK---------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E ++ PAT ++ + +L+ L G+ P +K++ L +F Sbjct: 197 QETAGGLPDVAGDIGYAGDPATTEQIEAMFGHLQAGLAAIGFLDPA-NPRKLMPRLRRLF 255 Query: 227 IRPELMREEVFLLRGIVSTL 246 R L REEV +LRGI + Sbjct: 256 ARTGLEREEVNILRGIAKRM 275 >gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640] gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06] Length = 271 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 M P L I+L NIG ARAM L +L +V P Sbjct: 1 MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFNPDDVQSFALPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E +++ G+F ++++ Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC 7002] Length = 250 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 8/248 (3%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S I++V+P N+G +AR M N L QL LVNP ++A + + ++ Sbjct: 3 SLTHIRIVVVEPAGALNLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLER 62 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L A+ ATT R+ V PK A E Q +IFGRE Sbjct: 63 AVVVPDLTTALTGCKKAIATTGLQRSLPMPVETPKAALPWFLE---DDQPSALIFGREDH 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---- 186 GL+N E+ + ++ P + SLN++QAV + +E + KE+ P Sbjct: 120 GLSNSELNQAQRLVCIPTGDAYTSLNLAQAVAVCSYELRSLATEQQGFPPKEKAAPLPDL 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A EL + +LE L + G+ P + ++ +++ R EV +LRGI+ + Sbjct: 180 ADLSELEGYYQHLERVLLQVGFLYPHTSTSR-METFRNLYHRASPSSREVAMLRGILRQV 238 Query: 247 DKFSRQSS 254 + ++ Sbjct: 239 EWAIANAA 246 >gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus EPS] gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus EPS] Length = 247 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 4/244 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR + E+ ++ A V+ + R+ Sbjct: 4 RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLTNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ + + AT R+ P+E L + Q+V +FG ER+G+ Sbjct: 64 VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKE-GDAQHVAFLFGSERFGMR 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NE++ N +S P +P F SLN+ A+ ++ +E ++ A + Sbjct: 123 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPVQAADAQSVA 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 LD+ E SL + G+ P KK++ L +F R + EE+ +LRGI + ++ Sbjct: 183 GMLDHWERSLVDIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMTDTAKGP 241 Query: 254 SRRN 257 + Sbjct: 242 KGGS 245 >gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T] Length = 245 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 3/243 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + ++L NIG ARAM L +L LV P + +P E A + ++ A ++D+ Sbjct: 6 ALDRIRVVLSRTTHPGNIGAAARAMKTMGLRELWLVAP-ESFPDEVATARASGAADLLDA 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV L+EA+AD F A TAR R L ++AA+ L R G V ++FG E Sbjct: 65 ARVVGTLEEALADTVFSAALTARRRELSLPRLQARDAALELVRRTQDGA-VALVFGNETS 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTNEE AL + ++ P + F SLN+ AV ++ +E ++ + Q PAT Sbjct: 124 GLTNEEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELRMAALGDAAAPADPQPEPATHA 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 + F+ +LE ++ G+ P K++L + +F R L REEV LLRG+++T + Sbjct: 184 DFEGFMAHLERAVTASGFHDPA-NPKRLLPRMRRLFNRVRLEREEVALLRGMLTTFETPR 242 Query: 251 RQS 253 R+ Sbjct: 243 RRG 245 >gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 125/255 (49%), Gaps = 4/255 (1%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P + A I+LV+PQ NIG V RAM NF + LRLVNP+ ++AR + Sbjct: 2 PENQHNPDIAAQLAIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAV 61 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A V++S ++S+L+EA+ + + TT R R + +AA + + Sbjct: 62 KAGYVLESATIYSSLEEALHGCQYAFGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHT 121 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++FGRE GL NEE+ L ++ P PS+N++Q+V L ++E + + + + +K Sbjct: 122 ALVFGREDCGLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQGLEARGELLK 181 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 A + S L +++ +L Y P + +L +F + L +V +LRG Sbjct: 182 PN--LAEIDQTESMLQHMKETLTRIDYLDP-QNPDHILRSFRRLFGKNGLTDRDVRILRG 238 Query: 242 IVSTLDKFSRQSSRR 256 + S +D+ + +R Sbjct: 239 LWSRIDRVQLELEKR 253 >gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14] Length = 410 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 2/251 (0%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+ A+ ++A AD ++ Sbjct: 12 DAVGPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNVAAQRAAAGADHILKH 71 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +F ++ A+AD + ATTAR + K V+AP+ AA +I +G +VGI+FGRER Sbjct: 72 VELFDTVEAAVADCTLLLATTARAHDQAKPVVAPEAAAAEATVQIAAGGHVGILFGRERA 131 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL NEE+A+++ II++PVNP F SLN++QAVLLM +E + ++ + E++ A++ Sbjct: 132 GLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRAALPFAMPERSERASQ 191 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ +F D L L++ + RP EK+ ML +L +IF R E ++++ L G+V + + Sbjct: 192 HQMQAFFDNLVSELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE- 250 Query: 250 SRQSSRRNNVL 260 R+ + VL Sbjct: 251 GRKGPAKGGVL 261 >gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus taiwanensis LMG 19424] gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 6/250 (2%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARS 59 T P ++ +LV+ N+G VARA+ L LV+PR+ A + Sbjct: 10 TAMPPDGGDAFGRVRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVA 69 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++ AD V+ + + + A+A A TAR R L P+ AA + + Sbjct: 70 MASGADDVLAAAVIVDGVDAALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSG 129 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-- 177 +V +FG ER+GL NE + NA+ P NP + SLN++QAV L+ +E + ++ Sbjct: 130 DVAFVFGNERYGLPNEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMRLTLLDAAPDA 189 Query: 178 -KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 N+ PAT ++ + +L+ LE G+ P +K++ L + R L REEV Sbjct: 190 GANIGYAGEPATAEQVEAMFGHLQTGLEAIGFLDP-SNPRKLMTRLRRLLARSGLEREEV 248 Query: 237 FLLRGIVSTL 246 +LRGI + Sbjct: 249 NILRGIAKHM 258 >gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957] Length = 287 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 13/251 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62 L+ A +LV+ N+G ARA+ + LV PR D A + ++ Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 AD V+ RV ++ EA+A A TAR R + P+ AA + + S V Sbjct: 79 GADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178 +FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + + Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198 Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 + PAT ++ +LE L E G+ P + KK++ L +F R +L EE Sbjct: 199 RVDGIGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257 Query: 236 VFLLRGIVSTL 246 V +LRGI + Sbjct: 258 VNILRGIAKRM 268 >gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803] gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803] Length = 240 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 12/240 (5%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 +PQ N+G +ARAM N L +L LVNPR + S +A++ + +A V+ +V +L A Sbjct: 2 EPQGERNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLATA 61 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + D I AT+AR R + P++A L + ++FGRE GLTNEE+ + Sbjct: 62 LGDRQRIIATSARERILQSPMETPRQALPWL---LAPNLKSALVFGREDSGLTNEELNQA 118 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--------TPATKGEL 192 + + PV+P +PSLN+SQAV++ +E + S+ N + AT +L Sbjct: 119 HRFVRIPVHPQYPSLNLSQAVMVCTYELYQASLAMETNNQVPGDRLEDGSTMPLATNAQL 178 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 S+ +LE +L P + K + I+ R L EEV LLRGI+ +D ++Q Sbjct: 179 DSYCQHLEKTLLNIEVLYPHTARSK-MAKFRRIYQRAALNSEEVALLRGILGQIDWLAQQ 237 >gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis M01-240355] Length = 271 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49 MT P L IIL NIG ARAM L +L +V NP Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 50 DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 P E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFHPDDVQSFVLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + + ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9] Length = 245 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 4/244 (1%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +++ + +ILV+P N+G +AR M NF L L LVNP+ S ++ + +A ++ Sbjct: 5 KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ R+ NL A+A AT R+ N + +P+ A L S + G+IFGRE Sbjct: 65 ETARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLGE--SEKPGGLIFGRE 122 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLTN+EI + ++ P +P + SLN++ AV + +E S+++ E AT Sbjct: 123 DRGLTNQEINYAQKLVFIPTSPEYISLNLATAVSICCYEL-SQSLMTMETGKMPTRNIAT 181 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L S+ LE L GY P + ++ ++ R EL EV +LRGI+ + Sbjct: 182 LDMLESYYQELESLLLSIGYLYPHTASSR-MEKFRHLYNRSELTTTEVAMLRGILKQVQW 240 Query: 249 FSRQ 252 + Sbjct: 241 AIKN 244 >gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 286 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 26/269 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL++ N+G ARAM L LV PR WP+ E+ ++ A V+D Sbjct: 11 RFILINTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLDKC 68 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----------------- 114 R+ L EA+ + + AT R+ P+E VL+++ Sbjct: 69 RIVETLDEALDGITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAHIPSAPGADLMSE 128 Query: 115 --IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q +G +FG ER+G+ NE++ + +S P NP F SLNI A+ ++ +E Sbjct: 129 SSPKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEWRLAL 188 Query: 173 IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232 + A ++ L +LE SL G+ P KK++ L ++F R ++ Sbjct: 189 GGFGVHAATTPSHLADAAQVTGMLTHLEQSLVHLGFLDPAS-PKKLMPRLNALFNRAQVT 247 Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLL 261 +EE+ +LRGI + + QS R+ L+ Sbjct: 248 QEEIHILRGIAKAILQQGPQSPARSADLV 276 >gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis alpha153] Length = 271 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 MT P L IIL NIG ARAM L +L +V P Sbjct: 1 MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+++ + ++L EA+AD A T+R R + Sbjct: 61 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLIRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 287 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 13/251 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62 L+ A +LV+ N+G ARA+ + LV PR D A + ++ Sbjct: 19 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 AD V+ S RV ++ EA+A A TAR R + P+ AA + + S V Sbjct: 79 GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178 +FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + + Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198 Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 V PAT ++ +LE L E G+ P K KK++ L +F R +L EE Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 257 Query: 236 VFLLRGIVSTL 246 V +LRGI + Sbjct: 258 VNILRGIAKRM 268 >gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551] Length = 326 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 13/251 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62 L+ A +LV+ N+G ARA+ + LV PR D A + ++ Sbjct: 58 LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 117 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 AD V+ S RV ++ EA+A A TAR R + P+ AA + + S V Sbjct: 118 GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 177 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178 +FG ER+GL N+ + + + P NP + SLN+SQAV L+ +E + + Sbjct: 178 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 237 Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 V PAT ++ +LE L E G+ P K KK++ L +F R +L EE Sbjct: 238 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 296 Query: 236 VFLLRGIVSTL 246 V +LRGI + Sbjct: 297 VNILRGIAKRM 307 >gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp. ND132] gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio desulfuricans ND132] Length = 252 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L P+ ENIG ARA N +++L +V+P + + ++A+A ++ S R+ Sbjct: 6 VVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARHILTSARIVD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ ++ TTAR K ++ P+ A V+++R+ +G V ++FG E GLTNE Sbjct: 66 TLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDKGLTNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLS 194 E ++ + +++ P + SLN++QAV+++++EC + S+ + + P T E + Sbjct: 126 ETSVCSGLVTIPTSREDTSLNLAQAVVVVLYECFKRSLAGPFVPDGPPEERPTTIKEQEA 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-RQS 253 L+ +L + + + + F + L R E LL G+ + F + Sbjct: 186 LFGNLQETLLAIDFL-KDDNPDYWMLPVRRFFSKINLKRNEFNLLMGVCRQVRWFVDKYG 244 Query: 254 SRRNNVL 260 + Sbjct: 245 PQAGGGA 251 >gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666] Length = 268 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 12/249 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +L++ N+G ARAM L LV PR + E+ ++ A V+ + R+ Sbjct: 4 RFVLINTSHAGNVGAAARAMKVMGFDDLVLVAPRWANVLNREETIQRASGALDVLKNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE---------RIFSGQNVGII 124 + L EA+ + + AT R+ AP+E L + +V + Sbjct: 64 VATLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAFL 123 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FG ER+G+ N+++ + +S P +P F SLN+ AV L+ ++ + + + + Sbjct: 124 FGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWRQALGGFAVQPATPEP 183 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A E+ L + E +L + G+ P KK++ L +F R +L EE+ +LRG+ Sbjct: 184 KLADAAEVAGMLGHWEEALTDIGFLDPAS-PKKLMPRLNQLFNRAQLSPEEIHILRGVAK 242 Query: 245 TLDKFSRQS 253 + + + ++ Sbjct: 243 AMSRTANKA 251 >gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus S110] Length = 243 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 6/244 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR + E+ ++ A V+ + R+ Sbjct: 4 RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLTNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+ + + AT R+ P+E L ++ Q+V +FG ER+G+ Sbjct: 64 VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQGE--QHVAFLFGSERFGMR 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NE++ N +S P +P F SLN+ A+ ++ +E ++ A + Sbjct: 122 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPIEAADAKAVA 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 L++ E SL E G+ P KK++ L +F R + EE+ +LRGI + +R Sbjct: 182 GMLEHWERSLVEIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMADAAR-G 239 Query: 254 SRRN 257 R+ Sbjct: 240 PRKG 243 >gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens DSM 3043] Length = 246 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 7/242 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM L+ L LVNPR +P +A +A A VID+ Sbjct: 2 LSNIRIVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPR-SFPDAEATRLAAGATDVIDNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 RV ++ +A+ D + +AR R+ P+ A L E V ++FGRER+ Sbjct: 61 RVVEHIAQAVGDCVQVVGASARLRSLPLPHFDDPEPMASELIEHA-QDAPVALVFGRERF 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--AT 188 GLTN+EI +S P NP + LN++QAV ++ +E Q P T Sbjct: 120 GLTNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRRAWRHHQASPATSQTPPSLPT 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + ++ F +L +L G+ + D L ++F R + R+E+ +LRG++STL+K Sbjct: 180 RDQMAHFEAHLHEALVTSGFLTQPHA--RTEDHLRALFARAQPSRKELSILRGVLSTLEK 237 Query: 249 FS 250 Sbjct: 238 AG 239 >gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 231 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 PVIILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ +V Sbjct: 2 NPVIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +L++ I DL ++YATT R K + + + + VGI+FGRE GL+ Sbjct: 62 YDSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSAKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEI+L+N II+ F SLNI+QAV+++ +E NS + +++ ATK E+ Sbjct: 118 NEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNS--TPREDIYNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L Sbjct: 175 HFLANLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228 >gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium HTCC2143] Length = 226 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M N L QL LV P+ +P E+A +A+A ++D+ V L++A+AD + T+AR Sbjct: 1 MKNMGLKQLYLVQPK-LFPHERAGWRAASAGDILDNAVVVDTLEDAVADCGLVVGTSARG 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R ++ P+ A + + V ++FGRE GLTNEE+ + N ++ P + + S Sbjct: 60 RRIPWPLVNPRVCAERVYPELTE-HPVALVFGREDRGLTNEELQVCNLHVNIPASEDYTS 118 Query: 155 LNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRP 211 LN+ AV ++ +E + +S++ + A ++ +LE +L E + +P Sbjct: 119 LNLGMAVQVVTYELRMAHLSGALSTDDMQEWDTKLAKSEDIERLFVHLEETLIEMQFLKP 178 Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 K+++ L +F R + EV ++RGI+S+ ++ R++ Sbjct: 179 -SAPKQLMTRLRRLFNRTRMDDLEVQMMRGILSSSQQWVRKAK 220 >gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 218 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 4/221 (1%) Query: 36 WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 LT L LV+P K+ + +A A V+ + ++ L EAIAD + ++AR+R Sbjct: 1 KVMGLTNLVLVDPACEI-DAKSLALAAGAADVVTNAKIVKTLDEAIADCGLVIGSSARSR 59 Query: 96 NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155 L P+E+ I E + V I+FGRER GLTNEE+ + + P NP + SL Sbjct: 60 TLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSL 118 Query: 156 NISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 N++ AV + +E + S + K+ + EL F ++LE + + Sbjct: 119 NLAMAVQTVSYEVRMAFLESQKYTGEKKVDEYPRAKELELFYEHLEKVTTQTQFINKKH- 177 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 ++ L +F R ++E+ +LRGI+S+++K + Sbjct: 178 PGMVMTKLRRMFTRARPEQQELNILRGILSSIEKSLEHRDK 218 >gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus denitrificans BC] gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans BC] Length = 270 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 24/257 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ Sbjct: 14 RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLENA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA---------------AIVLNERIF 116 R+ + L EA+ + + AT R+ P+ A+ + + Sbjct: 72 RIVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEADSAMN 131 Query: 117 SG--QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 132 HGPEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEWRQALGG 191 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 Q A +L L + E +L G+ P KK++ L +F R +L +E Sbjct: 192 FGVPESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQE 250 Query: 235 EVFLLRGIVSTLDKFSR 251 E+ +LRG+ ++ + +R Sbjct: 251 EIHILRGVAKSMLQAAR 267 >gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. MP688] Length = 254 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 8/235 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L P NIG ARAM L L+LVNP + +P +A + + A ++++ +V S Sbjct: 12 RVVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCS 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131 L+EA++ +AR R +++ +EAA E + ++FG E G Sbjct: 71 TLEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFGTEMSG 130 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 L+N E+ + P +P + SLN++ AV +M +E + + + + TPAT Sbjct: 131 LSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQPLPHAGLKATPATN 190 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI++ Sbjct: 191 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 244 >gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 272 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 21/267 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46 M P + I+L NIG ARAM LT+L LV Sbjct: 1 MPNTKPTTPDYLSNISIVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPP 60 Query: 47 -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 NP+ E++ ++ A V+++ R+ + L+EA+AD A T+R R + Sbjct: 61 VFDPANPQAFKLPEESFILASGAADVLENARICATLEEALADTVLSCALTSRRRELTAEL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+ L + Q ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRALTPELLSAAEAEQQTALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S E E+NT AT ++ + +++ +E+ G+F ++++ Sbjct: 181 QVVCYEIYSQTDSSMEHLKVEKNT-ATHAQIGGMVAHMQGLMEDIGFFN-RRNGERIIRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDK 248 L ++F R E++ +LRG +T+ K Sbjct: 239 LQNLFARAGTETEDIDILRGFFNTVKK 265 >gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 243 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 4/239 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +++V+ NIG ARAM N +L+ L LVNP+ G+PS A + ++ AD V+ + V Sbjct: 7 NVRVVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPK-GYPSAIATARASGADDVLSNAVV 65 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGL 132 +LKEA+ ++ + +AR RN + A + + I Q V +IFG ER GL Sbjct: 66 CESLKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGL 125 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TNEE+ L +++ P N + SLN++ A+ + ++ ++ + K N A EL Sbjct: 126 TNEELDLCQILMTIPGNSHYFSLNVASAIQVFAYQNY--VYNTTIEFKKSTNKLANFDEL 183 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +F +L LE YF K ++ L F R +EEV + RGI + F + Sbjct: 184 ENFYAHLAQVLEYIEYFEDKRPKALLMRRLRRFFTRAMPEKEEVAIFRGIFRNIKPFKK 242 >gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147] Length = 266 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 21/266 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---------------- 49 P L I+L NIG ARAM LT+L LV P Sbjct: 2 PTLPAYLANIRIVLSRTSHPANIGAAARAMKTMGLTRLTLVAPNIMATPMTPEPPAFIAE 61 Query: 50 ---DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 D E++ S+ A V++ ++ + L EA+A A T+R R + P++ Sbjct: 62 QAADFRLPEESFVLSSGARDVLERAKIVATLPEALAGTTLSCALTSRRRELTTPLQTPRQ 121 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A L GQ + ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ + Sbjct: 122 LAPSLLAAAQVGQQIALVFGNETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCY 181 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + + + E+N AT ++ + +LE ++ + +FR +++M+ L+S+F Sbjct: 182 ELFSHVNMDMSHLIPERN-LATAEQVAGMVQHLEDTMVQLDFFR-RRNQERMMRRLHSLF 239 Query: 227 IRPELMREEVFLLRGIVSTLDKFSRQ 252 R + E++ +LRG ++ + + + Sbjct: 240 NRADTTTEDIDILRGFLNRVQQKLPK 265 >gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii SP-6] Length = 252 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 6/237 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + IL+ N+G ARAM L LV PR D E+ + ++ A Sbjct: 1 MTPETDPTRFILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETVAMASGAA 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ R+ + L EA+ +H AT R+ P+E L G+ V +F Sbjct: 61 DILVRARIVATLDEALEGIHVACATAMTPRDFGPPTSTPREH---LPALAAGGERVAFVF 117 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G ER+G++NEE+ +S P P + SLN++QAV LM +E Sbjct: 118 GSERYGMSNEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWRMALGGYDVSARTPAVQ 177 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 A+ E+ L + + +L G+ P KK++ L + R L REEV +LRGI Sbjct: 178 RASLDEVQGALSHWQDTLVALGFLDPA-APKKLMPRLQQLLNRAALTREEVHILRGI 233 >gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 5/248 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 N + ++L NIG ARAM L L L+NPR +P +A + +A AD V+ Sbjct: 4 PNPLENVRVVLSHTTHPGNIGAAARAMKTMGLQHLYLINPR-YFPDAQATAMAAGADDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S V S++ EA+ + F A TAR R+ V AP+EA + + S V ++FG E Sbjct: 63 QSAVVCSSIDEALQGVVFTVAMTARLRDISIEVKAPREAMPEVLQHAAS-NPVALLFGTE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLTNEE+ + ++ P NP F SLNI+ AV +M +E N S Q PAT Sbjct: 122 MSGLTNEEMGKAQLGVNIPANPDFSSLNIAAAVQVMAYEL--NVAAQSFTPAIPQIEPAT 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +LE +L E G+F + +++ L ++ R L EE+ +LRG+++ + Sbjct: 180 HERVEGLYAHLEKTLFEIGFFT-TQNPARLMQRLRRLYSRTRLEDEEINILRGMLTVATE 238 Query: 249 FSRQSSRR 256 ++ + +R Sbjct: 239 YNARLRKR 246 >gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp. SIP3-4] Length = 258 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 8/235 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L P NIG ARAM L L+LVNP + +P +A + + A ++++ +V S Sbjct: 16 RVVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCS 74 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131 L+EA+ +AR R +++ +EAA E + ++FG E G Sbjct: 75 TLEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFGTEMSG 134 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189 L+N E+ + P +P + SLN++ AV +M +E + + + + TPAT Sbjct: 135 LSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQALPHAGLKATPATN 194 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 E+ F +LE +L E G+ P ++++ L ++ R L +EEV +LRGI++ Sbjct: 195 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 248 >gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria polysaccharea ATCC 43768] Length = 271 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 21/265 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48 M P L IIL NIG ARAM L +L +V P Sbjct: 1 MASEKPALPAYLDNIRIILTRTGHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60 Query: 49 -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 + E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 61 VFDPEHPQSFELPEESFILASGAADVLHNAEIVATLNEALADTAIACALTSRRREITAPL 120 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 121 QTPRDLVPELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + S ++++++ AT ++ + ++E + + G+F ++++ Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 + S+F R E++ +LRG +T+ Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263 >gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus denitrificans K601] Length = 270 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 24/257 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V++ Sbjct: 14 RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLERA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------------- 118 R+ + L EA+ + + AT R+ P++ +L + Sbjct: 72 RIVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAIEADSAIN 131 Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 132 PEPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYEWRQALGG 191 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + + Q A +L L + E +L G+ P KK++ L +F R +L +E Sbjct: 192 FAVQESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQE 250 Query: 235 EVFLLRGIVSTLDKFSR 251 E+ +LRG+ ++ + +R Sbjct: 251 EIHILRGVAKSMLQAAR 267 >gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330] Length = 265 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 21/265 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------------ 48 + + I+L NIG ARAM L+QL LV P Sbjct: 3 TVPDYLCHIRIVLSRTSHPANIGAAARAMKTMGLSQLVLVAPNIMATPMTPEPPEFIAEQ 62 Query: 49 -RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 E++ ++ A V+++ ++ + L EA++ A T+R R + P+E Sbjct: 63 AEQFVLPEESFILASGAVDVLENAKIVATLPEALSGSVLNCALTSRRRELTSPLQTPREL 122 Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L SGQ V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ +E Sbjct: 123 TPSLLAAAQSGQTVSLVFGNETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYE 182 Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + E+N AT ++ + +LE ++ + +FR +++M+ L+++F Sbjct: 183 LFSQVNQDMSHLIPERN-LATADQVAGMVQHLEQTMGQLDFFRS-RNQERMMRRLHALFN 240 Query: 228 RPELMREEVFLLRGIVSTLDKFSRQ 252 R + E+V +LRG + + + Sbjct: 241 RADTTTEDVDILRGFYKKIQQSLSK 265 >gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha C91] Length = 248 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 10/249 (4%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P +P I+L NIG ARAM L +L L+NP+ +P +A + Sbjct: 1 MNPASP-----LDNVRIVLSHTSHPGNIGATARAMKTMGLNKLYLINPK-SFPDSEADAR 54 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++NA ++++ V SNL+EA+ D A TAR R+ ++AAI L R Sbjct: 55 ASNARDILETAHVCSNLEEALGDTFLAAALTARRRDLPHPTCNARQAAIELI-RHAQHHP 113 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FGRE GLT EI+ + P NP SLN++ AV +M +E + + Sbjct: 114 VALLFGRESAGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELRMVLEEDAAAHY 173 Query: 181 KEQNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 P A+ E+ +LE + G+ P + K ++ + +F R L +EEV L Sbjct: 174 FASRLPDAASLHEIEGLHYHLERVMIHSGFMDPDQ-PKHLMRRIRRLFARTRLEKEEVNL 232 Query: 239 LRGIVSTLD 247 LRG+++ +D Sbjct: 233 LRGLLTAVD 241 >gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 200 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 5/201 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188 LTN+E+ + ++ NP + SLN++ AV ++ +E + + E E+ Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179 Query: 189 KGELLSFLDYLEISLEERGYF 209 +L F +LE +L G+ Sbjct: 180 VDDLERFYGHLEQTLLSTGFI 200 >gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54] Length = 263 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 14/260 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+V+P N+G ARA+ ++L LV P+ D +A + ++ A Sbjct: 1 MTQAFSRVRFIMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGAL 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGI 123 V+++ R++ L+EA+A + +A TAR R+ ++AA + + I Sbjct: 61 DVLENARIYDTLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAI 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------V 174 + G ER GLTN +I L + I P NP + SLN++QA+ L WE + Sbjct: 121 VLGTERAGLTNAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPA 180 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 S+ + PA+ + +FL + E +L + P KK+L + +F R L R+ Sbjct: 181 STAQAPSRGAEPASGEAVQAFLAHWEEALVGVRFLDPAH-PKKLLPRMRHLFSRVALTRD 239 Query: 235 EVFLLRGIVSTLDKFSRQSS 254 EV ++RG+ + + +R+ Sbjct: 240 EVDMMRGVCTAMLAAARRDG 259 >gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus TPSY] Length = 264 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 28/261 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ Sbjct: 4 RFILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNER 114 R+ + L EA+ + + AT R+ P++ L + Sbjct: 62 RIVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARK 121 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 122 PSPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALAT 181 Query: 175 SSEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 E +++ P A ++ L + E +L G+ P KK++ L +F R + Sbjct: 182 RGEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQ 240 Query: 231 LMREEVFLLRGIVSTLDKFSR 251 L +EE+ +LRG+ ++ + ++ Sbjct: 241 LTQEEIHILRGVAKSMLQATQ 261 >gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164] gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Acinetobacter radioresistens SK82] gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164] Length = 280 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I++V+ L NIG RAM L +L LV PR +P + + +A A +I+ + Sbjct: 13 LSHVRIVMVNTTLPANIGSALRAMKTMGLCRLILVAPR-TYPHQDIDALAAGAQDLIEQI 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130 ++ L+EAI D H ++ T+AR+R +L + AA + + S Q + I+FGRE Sbjct: 72 QIVETLEEAIQDCHLVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDR 131 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------ 184 GLTNEE+AL+N ++ PVN + LN++QA+ ++ +E ++ + +E N Sbjct: 132 GLTNEELALANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLELVDTPPQETNQMPVTG 191 Query: 185 --------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 T ++ F +LE LEE + P K+ L +L R E Sbjct: 192 KSMMDWDEPLVTHEQMEQFYPHLEKMLEEIEFLDPNNKRLLPLRLRRLFGR-IQLDRMEY 250 Query: 237 FLLRGIVSTLDKFSRQSSRRNNVLLQK 263 LLRGI S + + + +++N ++ Sbjct: 251 HLLRGIFSRVQALNNGTWKKSNSQKEQ 277 >gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 251 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 146/248 (58%), Gaps = 4/248 (1%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +A+ PVI+LV PQLGENIG ARAM NF L ++RLV+PRDGWP+ A ++A AD Sbjct: 3 EAEGAARHPVIVLVRPQLGENIGKAARAMLNFGLAEMRLVSPRDGWPNPSAGPAAAGADI 62 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V++ +VF L EA+AD +YATT R R K VL P++AA + + + IIFG Sbjct: 63 VLERAQVFPTLAEAVADCSHVYATTVRKRGVTKPVLTPEQAA---RDIVSASGRSAIIFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ER GL +++AL+ AI++ P+NP F SLN++QAV+L +E ++ + + V++ P Sbjct: 120 PERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH-VDLVQPTVEDMLPP 178 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A + E + L LE RGYF P + L ++ +P EV +RG++S L Sbjct: 179 APQEEFEGMFEQLCTMLEPRGYFEPESRAASTRRTLRTMLTKPGWNHLEVRTMRGVLSAL 238 Query: 247 DKFSRQSS 254 + Sbjct: 239 RRKPGSRP 246 >gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 243 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 4/241 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K PV++LV PQLGENIG ARAM NF L +LR+V PRDGWP+ A ++A AD V++ R Sbjct: 7 KKPVVVLVRPQLGENIGKAARAMLNFGLVELRMVTPRDGWPNPDAGPAAAGADIVLEKAR 66 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF + EA+AD +YATT R R K V P+E E + I+FG ER GL Sbjct: 67 VFDSTAEALADCSHVYATTVRKRGVTKPVYTPEE---ASREMAQADGRSAILFGPERSGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 E++AL+ AI++ P+NP F SLN++QAV+L +E ++ + ++Q PA + EL Sbjct: 124 ETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKHESLVQPTQ-EDQLPPAPQKEL 182 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + ++E LE +GYF P + + L + +P EV LRG++S+L + +++ Sbjct: 183 EGLIAHMEGMLESKGYFLPESRAEATRRTLRGVLTKPGWNHLEVRTLRGVLSSLQRDAKR 242 Query: 253 S 253 S Sbjct: 243 S 243 >gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 249 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 3/239 (1%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ P IL PQLGENIG AR M NF L +L +V+PRDGWP++KA + SA + V Sbjct: 1 MTQNSATPAFILHTPQLGENIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGS-PV 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + RV L +AI D +YATTAR R K V+ +EA + I +G+ V ++FG Sbjct: 60 LGNARVEYRLGDAIHDTTRLYATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGG 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E+ GL NE + +++ II+ PV+ F SLN++QAV ++ +E + + + + A Sbjct: 120 EKSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYEW--TAGEGAPAEFEPVSDVA 177 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + +L ++ E LE G+F P K M+ +L + FIR +EV RG V L Sbjct: 178 KREDLERMFEHFETELERAGFFHPPSKTPLMVQNLRNAFIRGRWTEQEVRTFRGAVKAL 236 >gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 257 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 13/258 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+V P N+G ARA+ L LV PR D A+S ++ A Sbjct: 1 MSKFFEQVRFIMVRPSHPGNVGAAARAIKTMGFHDLCLVAPRFPDVLELPDAQSLASGAT 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 V+ SVR+ L+EA+A + +A TAR R ++AA V + + S V I Sbjct: 61 DVLASVRIVPTLEEALAPITLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAI 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------SIVS 175 + G ER GLTNE++AL I P NP + SLN+SQA+ L WE + S Sbjct: 121 VLGTERSGLTNEDVALCQRICHIPANPEYSSLNVSQALQLAAWELRYTLASAASLPLLPS 180 Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 +E E + A ++ + + + E ++ E G+ P KK++ + +F R L +E Sbjct: 181 TEGQANEGDQAAPGEKVQALMTHWEQAITEVGFLDPAH-PKKLMPRMRHMFGRNGLTHDE 239 Query: 236 VFLLRGIVSTLDKFSRQS 253 V +LRG+ + + K +++ Sbjct: 240 VDMLRGLCTAMIKAAKKR 257 >gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2] gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis Aspo-2] Length = 248 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 2/235 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL P+ ENIG ARA N +++L +V P + + ++A+A ++DS RV Sbjct: 6 AVILFRPKYPENIGSAARACLNMGVSRLIIVAPYNLDMDKARPLATAHARHILDSARVVE 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ +Y TTAR K +++P A V++ER+ SG V I+FG E GLTN+ Sbjct: 66 TLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGPEDTGLTND 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELLS 194 E ++ + +++ P + SLN++QAV+++++EC + ++ + A T E + Sbjct: 126 ETSVCSGLMTIPTSREGTSLNLAQAVVVVLYECFKRALDAPFTPNGPPTERATTVQEQEA 185 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + L SL + + + + F + L R E LL G+ + F Sbjct: 186 LFENLRESLLAIDFL-KGDNPDYWMLPVRRFFAKINLRRNEFNLLMGVCRQIQWF 239 >gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel] Length = 230 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 8/234 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+GENIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID+ ++ Sbjct: 2 NPIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + NL+++I DL ++YATT R K + + L+ + VGI+FGRE GL+ Sbjct: 62 YDNLEDSIKDLEYLYATTCIKRAMNKDYVFSQN----LSLDYPNSAKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEI+L+N II+ F SLNI+QAV+++ +E N + +++ ATK E+ Sbjct: 118 NEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNFTL--REDIHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTL 246 FL L L++ G+F+ +KK M ++ +IF R L EV +L+GI+ +L Sbjct: 175 HFLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEVQILQGIIKSL 228 >gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella capsiferriformans ES-2] Length = 253 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 132/248 (53%), Gaps = 5/248 (2%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 QN ++L NIG ARAM L++L L+NPR +P +A + +A AD V+ Sbjct: 4 QNHLSNIRVVLSHTTHPGNIGAAARAMKAMGLSRLYLINPR-HFPDPQASAMAAGADDVL 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + V +++ EA+ + TAR R+ V P+EA + ++ + Q V ++FG E Sbjct: 63 QNAVVCASIDEALDGVVLTVGMTARQRDISNEVSVPREAMPQVVQQAQTLQ-VALLFGTE 121 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLTNEE + + +++ P NP F SLN++ AV ++ +E + + + V++ PA Sbjct: 122 MSGLTNEEASRAQMLVNIPANPEFSSLNLAAAVQVISYELSVAA--QNYQPVEQSLQPAA 179 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ F+ +LE +L E G+F + +M+ L ++ R +E+ +LRGI+S + Sbjct: 180 HQQVEGFMSHLEKTLHEIGFFT-TQNPARMMQRLRRLYARARPEADEINILRGILSVTTE 238 Query: 249 FSRQSSRR 256 ++ + R Sbjct: 239 YNGRLKAR 246 >gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2] Length = 281 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 107/244 (43%), Positives = 155/244 (63%), Gaps = 6/244 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68 GP IILV PQL NIGM ARAM NF L+ LRLV+PR+GWP + A +++A A ++ Sbjct: 16 GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGALKKGAHAAAAGAVHLL 75 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++ +EA+ADL+F++ATTAR R K VL P EA I G G++FG E Sbjct: 76 EGAKLYDTPEEAVADLNFVFATTARERGQHKPVLTPAEALPGAALAIAGGAKGGVMFGPE 135 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPA 187 R GL+N+E+AL++ +I+FPVNP + SLN++QAVLL+ +E M S + V ++ PA Sbjct: 136 RTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMRASTEAKAPFVADPRSPPA 195 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + +LSF YLE LE G+FRP++K M ++ +IF R +L ++V LRG + L Sbjct: 196 PREMVLSFFAYLEGELERVGFFRPLDKAPVMRRNIKNIFHRLDLSAQDVSTLRGAIVRLV 255 Query: 248 KFSR 251 + R Sbjct: 256 EGPR 259 >gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145] gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145] Length = 282 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 17/275 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + I++V+ L NIG RAM L++L LV P+ +P + +A A Sbjct: 8 AVSAHLSHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATD 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125 +I+ + + L++AI D ++ T+AR+R +L + AA + + Q V I+F Sbjct: 67 LIEQIEIVETLEDAIKDCQIVFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILF 126 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------ 179 GRE GLTNEE+A++N ++ PVN + LN++QA+ ++ +E ++ E+ Sbjct: 127 GREDRGLTNEELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATMSQIEQPRDAKAT 186 Query: 180 --------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231 ++ ++ F +LE L E + P + + L +F R +L Sbjct: 187 MQVIDGIEMEWDEPLVNHAQMEQFYPHLEKMLAEIEFMDPK-NPRLLPLRLRRLFGRIQL 245 Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266 R E LLRGI S + + + ++++ + E Sbjct: 246 DRMEYHLLRGIFSRVQALNNGTWKKSSHTSSQDED 280 >gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola ehrlichii MLHE-1] Length = 260 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 6/256 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + I+LV NIG VARAM L +L LV P +P E+A ++++ AD V+++ Sbjct: 10 NPENLRIVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEA 69 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL A+A + +AR R VL +EA + S + V ++FGRER Sbjct: 70 AGRHDNLDAALAGCGLVMGLSARPRRITTAEVLDVREAGRRVVAEAES-RPVALLFGRER 128 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN E+ A++ P NP + SLN++ AV ++ E V A+ Sbjct: 129 SGLTNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEVNMARGAGV---VAPTRRSASA 185 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ F ++L + G+ R + ++ L +F R E+ +LRG+++ ++ Sbjct: 186 QDMEYFFEHLARVADRVGFLRK-HNPEILMRRLRQLFYRAAPDDHELQMLRGLLANVEPH 244 Query: 250 SRQSSRRNNVLLQKTE 265 + K E Sbjct: 245 LPELPDAAQRAGTKDE 260 >gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 242 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 4/238 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+L NIG ARAM L++L LV P +P A + ++ A V++S Sbjct: 6 ALDRIRIVLSRTSHPGNIGAAARAMKTMGLSRLYLVAP-SAFPDPVADARASGATDVLES 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L EA+ A TAR R V + +EAA L G +V ++FG E Sbjct: 65 ACVVDSLDEALHGTILSAAITARRRERSVPVRSAREAAPELVAFAEKG-DVALVFGTEMS 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTN+E+ + +S P NP F SLN+ AV L+ +E ++ S + AT Sbjct: 124 GLTNDEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELRMAAL-SPTPPAEPLPDLATFE 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ F +LE ++ G++ P K++L L +F R L +EEV +LRGIV L++ Sbjct: 183 EIEGFHRHLERAMTASGFYDPA-NPKRLLQRLRRLFGRVRLEKEEVNILRGIVGALER 239 >gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum DSM 180] Length = 260 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 6/251 (2%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q+ S +LV+ NIG VARAM L++L LV PR P +A + ++ AD Sbjct: 4 QMTESLARIRFVLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQ-RPDAEALARASGADD 62 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V NL +A+A + +AR R+ +L P E A L G+ V ++ G Sbjct: 63 LLARAGVHENLTDALAGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGE-VALMLG 121 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-T 185 RE GLTN+E+A + ++ P NP F SLN++ A ++ +E + + + + E Sbjct: 122 RESSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRRAARAVAGERLTETPRD 181 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 AT + F +L +L G+ P + + +F R + R E+ +LRGI+S Sbjct: 182 LATAEAMEGFYAHLTETLVRIGFSDPEQSRTLTRRL-RRLFNRAQPDRVELNILRGILSA 240 Query: 246 LDKFSRQSSRR 256 R++ R Sbjct: 241 AQ--GRKTPER 249 >gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 6/239 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +++V+ NIG ARAM N NL++L LVNP+ G+PS A + ++ AD V+ V Sbjct: 12 VRVVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSATATARASGADDVLSDAIVC 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133 +L+EA+ H + +AR RN + + + I Q V +IFG E+ GLT Sbjct: 71 ESLEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLT 130 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGEL 192 N+E+ L +++ P NP + SLN++ A+ + + +N I ++ KE + A+ EL Sbjct: 131 NKELDLCQILMTIPGNPDYFSLNVASAIQVFAY---QNYIYNTPTEFKENVSKLASFDEL 187 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 SF +L LE YF+ + ++ L F + E EEV + RGI+ + F R Sbjct: 188 ESFYTHLTQVLEHIEYFKDQHSQTLLMRRLRCFFTKVEPKIEEVSIFRGILKNIKPFKR 246 >gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC 23834] Length = 268 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 129/265 (48%), Gaps = 21/265 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP----------------- 48 P + + + ++L NIG ARAM L +L LV P Sbjct: 5 PTVPDYLRHIHVVLTRTSHPGNIGAAARAMKTMGLNRLTLVAPNLMATPMTPEPPTFDAA 64 Query: 49 --RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 E++ ++ A V++ ++ ++L EA+AD A T+R R + P+E Sbjct: 65 QAAAFQLPEESFILASGARDVLEQAQIVASLDEALADTVLSCALTSRRRELSAPLHTPRE 124 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L + G V ++FG E +GL +E+ N +++ NP + SLN++QAV ++ + Sbjct: 125 LVPELLQAAQQGFQVALVFGNETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCY 184 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + + + +++ +TPAT+ + +D+LE +E+ G+ +++M+ L+S+F Sbjct: 185 EIFSQTGIGMSQ-LQQAHTPATQSQTRGMVDHLEQIIEQTGF-ANRRNQERMMRRLHSLF 242 Query: 227 IRPELMREEVFLLRGIVSTLDKFSR 251 R RE++ LLRG+ + + + + Sbjct: 243 DRASPSREDIDLLRGLWNRISQRLK 267 >gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804] gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii] Length = 255 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 14/247 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 I+V P N+G ARA+ L LV PR D +A + ++ A V++ RV Sbjct: 10 FIMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVC 69 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGL 132 + L+EA+A + +A TAR R+ ++AA + ++ + + + ++ G ER GL Sbjct: 70 ATLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGL 129 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQ 183 TN +IAL I P NP + SLN++QA+ L WE + S+ + Sbjct: 130 TNAQIALCQRICHIPANPEYSSLNVAQALQLAAWELRYALLRANGATLLPASTAQQPDPG 189 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 AT + +FL + + +L + P KK++ + +F R L R+E+ +LRG+ Sbjct: 190 AALATSEAVQAFLAHWQEALVHVQFLDPAH-PKKLMPRMRHLFSRSALTRDEIDMLRGVC 248 Query: 244 STLDKFS 250 + + + Sbjct: 249 TAMLRKK 255 >gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC 7425] Length = 262 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 7/256 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + I+LV+P NIG ++R + N L QL LVNP +AR + +A ++ Sbjct: 10 SPLAQVRIVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQ 69 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R L +A+ I ATT R + P+ L G +IFGRE Sbjct: 70 QARQVQTLPQALEGCERIMATTMREQVGEVVTELPRTGLPWLL-----GHPAALIFGRED 124 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPAT 188 GLTN E+ + +I P +P++PSLN++QAV + +E + + + E A Sbjct: 125 RGLTNTELNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQASQALVEPIAPGGGELAR 184 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L ++ LE L + GY + + +F R + EV LLRGI+S ++ Sbjct: 185 FENLEAYYQQLETVLLKIGYLYSHTAVSR-MAKFRRLFNRSQPTEAEVALLRGILSQVEW 243 Query: 249 FSRQSSRRNNVLLQKT 264 ++ + Sbjct: 244 ALTAKPALDSSPDSRE 259 >gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42] Length = 264 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 28/261 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+ Sbjct: 4 RFILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNER 114 R+ + L EA+ + + AT R+ P++ L Sbjct: 62 RIVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARN 121 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V +FG ER+G+ NE++ + +S P NP F SLN+ AV ++ +E + Sbjct: 122 PSPETGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALAT 181 Query: 175 SSEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 E +++ P A ++ L + E +L G+ P KK++ L +F R + Sbjct: 182 RGEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQ 240 Query: 231 LMREEVFLLRGIVSTLDKFSR 251 L +EE+ +LRG+ ++ + ++ Sbjct: 241 LTQEEIHILRGVAKSMLQAAQ 261 >gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine bacterium 580] Length = 248 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 119/236 (50%), Gaps = 4/236 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L NIG ARA+ T L LVNP+ +P +A + +A A+ ++ + + S Sbjct: 13 IVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQ-FPHAEANALAAGAEDILANATIVST 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +++A+ D H I TAR R + +E A L S + + ++FG E GL+N+E Sbjct: 72 IEDALKDSHLIIGFTARQRELSQEHKNIREIASKLKSESHS-KKIALLFGNETNGLSNDE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSF 195 + + + N + SLN++QA+ ++ +E S ++ ++N T F Sbjct: 131 VKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSEDNAIIQSSKKNELVTHEVQNGF 190 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +LE L E G+ + ++ +++ L +F R + ++EV +LRGI++ + K + Sbjct: 191 YLHLEQLLTEIGFLKKIQ-GDRLMQRLRLLFNRTTMEKDEVNILRGILTDIQKKIK 245 >gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein [Achromobacter xylosoxidans A8] Length = 263 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 14/260 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+V+P N+G ARA+ ++L LV P+ D +A + ++ A Sbjct: 1 MTQAFSRVRFIMVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTSQPEAVALASGAL 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGI 123 V+++ R+ +L+EA+A + +A TAR R+ ++AA + + + Sbjct: 61 DVLENARIHDSLEEALAPVTMAFALTARVRDLGPPPCDIRQAAELARAHLGETAEGVAAV 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------V 174 + G ER GLTN +IAL + I P NP + SLN++QA+ L WE + Sbjct: 121 VLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPA 180 Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 S+ + PA+ + +FL + E +L + P KK++ + +F R L R+ Sbjct: 181 STAQEAPRGAAPASSEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRHALSRD 239 Query: 235 EVFLLRGIVSTLDKFSRQSS 254 EV ++RG+ + + +R++ Sbjct: 240 EVDMMRGVCTAMLATARRNG 259 >gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A] Length = 255 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 16/256 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P N+G VARAM NF + L LVNP + +AR+ +++A V++ R+ Sbjct: 8 IRVVLVEPMYQGNVGSVARAMKNFGYSDLVLVNPCE--LEGQARAMASHARDVLEGARIT 65 Query: 75 SNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132 S L+EA+ + TT A + + + P A E+I + ++FGRE G Sbjct: 66 STLEEAVRGADLLVGTTGASSLKTGEHIRLPLYPAREFKEKIKEYSGTIAVLFGREDNGF 125 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 N+E+ + +I+ P + ++P +N+S AV ++++E E + N A +L Sbjct: 126 NNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYELSELEGGN--------NPLAEGFDL 177 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 +L+ LEE Y P KK K L I R L EV LRGI+ ++ Sbjct: 178 QLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKTERKMGF 235 Query: 253 SSRRNNVLLQKTEKSE 268 ++ N LQK E SE Sbjct: 236 ATEAEN--LQKVEDSE 249 >gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 271 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPRDGWP-- 53 + I+L NIG ARAM L++L LV NP P Sbjct: 4 TVPPYLANIRIVLSRTSHPANIGAAARAMKTMGLSRLYLVAPNLMQTPMTPNPPAFDPKQ 63 Query: 54 ------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 E++ + ++ A V+++ + +L EA+ A T+R R + P+E Sbjct: 64 PAHFCLPEESFTLASGAADVLENAVIVGSLPEALTGTVLSCALTSRRRELTSPLQTPREL 123 Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L + Q+V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ +E Sbjct: 124 TPSLLAAAQARQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYE 183 Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227 + + E+N AT ++ + ++E ++E+ +FR +++M+ L+S+F Sbjct: 184 LFSQTHQDMSYLIPERN-LATADQVAGMVRHMEQAMEQLDFFRK-RNQERMVRRLHSLFS 241 Query: 228 RPELMREEVFLLRGIVSTLDKFSRQS 253 R + E++ +LRG + + + ++++ Sbjct: 242 RADTTTEDIDILRGFFNMVQQKTQKT 267 >gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 252 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 6/245 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM L +L LV P A SA A+ V+ V Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGLARLVLVAPECSV-DVDAYRRSAGAEDVLQQAPVL 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+AD + TAR+R L P +AA L + V ++FGRER GLTN Sbjct: 66 PTLADALADCRLVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPATKG 190 EE+ +A + P +P F SLN++ AV ++ +E + S + PA+ Sbjct: 126 EELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLTQLRSEAAVPAAAPGLREAPASHA 185 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L L +L++ + + + L +F+R L +EV LLRG++S + + Sbjct: 186 QLEGLFGQLAETLDDIDF-HKGRAPESAMRKLRRLFLRNALSEQEVRLLRGVLSDAQRMA 244 Query: 251 RQSSR 255 R + + Sbjct: 245 RLAGQ 249 >gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From Haemophilus Influenzae Rd Kw20 Length = 244 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 14/241 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARA LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 5 LENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 63 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 120 LTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQNNKKNSLSLIEKNYP- 178 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T +L F DY E + G+ + + + L ++ R +L + E+ +L G +S ++ Sbjct: 179 TTDQLAYFFDYTERIYQSLGFI----QNQGVXRKLKRLYYRAKLEKNELNILNGXLSAVE 234 Query: 248 K 248 K Sbjct: 235 K 235 >gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 265 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 7/258 (2%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +P + I+L NIG ARAM +++L LVNP+ +P ++A + +A Sbjct: 6 RSPSSGVPLERIRIVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPK-RFPDDEAVARAAG 64 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 AD ++ +V + L A+AD ++ A +AR+RN L ++AA+ L R +G+ V + Sbjct: 65 ADDILGQAQVCTTLDAALADTVWVCAVSARHRNLGPPALPARQAAVDLVARAGAGE-VAL 123 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----N 179 +FG E GL+N E+ + P +P + SLN++ AV L+ +E + S Sbjct: 124 LFGNETAGLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELRLAAFAGSPPVVTRT 183 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + + PA ++ F +LE + + P E+ +++L L +F R EL +E+ +L Sbjct: 184 MPFASPPAVHQDVERFYAHLERVMVASDFLDP-ERPRRLLPKLRRLFGRTELESDEINIL 242 Query: 240 RGIVSTLDKFSRQSSRRN 257 RG++ +++ R Sbjct: 243 RGLLDAVERKLAGPGRSG 260 >gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44] Length = 266 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 4 RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARV 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113 L+EA+ + + AT R+ P+E +L + Sbjct: 64 VDTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSVSEVDAGLTDNLP 123 Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++ Sbjct: 124 TSGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRV 183 Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 + A ++ L + E +L G+ P KK++ L +F R + Sbjct: 184 ALGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 242 Query: 231 LMREEVFLLRGIVSTL 246 L +EE+ +LRG+ + Sbjct: 243 LTQEEIHILRGVAKAM 258 >gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 253 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 5/250 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S + P IILV PQ+GENIG AR M NF L LR++NPRDGWP++KA + SA A Sbjct: 6 SNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGVE 65 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +VF L+ +ADL ++ ATTAR R K V +E L R G VG++FG E+ Sbjct: 66 AKVFDTLEAGLADLTYVLATTARPRGMEKPVFNAEEGIGALMSRPDVG--VGVMFGAEKA 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTPATK 189 GL NE++AL++ I+++PV+ F SLN++QAV + ++ ++K A + Sbjct: 124 GLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAHSWAARTLEGEAKKEFAGVGDSADR 183 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD-- 247 +L+ ++ E L+ G+F P EK+ M +L + FIR + +EV RG V L Sbjct: 184 EQLVRMFEHFEDELDRAGFFFPAEKRPVMTQNLRNAFIRAQWTNQEVQTFRGAVKALALG 243 Query: 248 KFSRQSSRRN 257 + + R++ Sbjct: 244 RGKARIDRKD 253 >gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa] gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa] Length = 230 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 8/236 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSSEVQTLQGIIKSLNQ 230 >gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 24/270 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49 MTP AP + ++L NIG ARAM LT+L LV P+ Sbjct: 1 MTPAAPAYLD---NIAVVLTRTSHPANIGSAARAMKTMGLTRLILVAPKLMATPMTPAPP 57 Query: 50 --------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 E++ ++ A V+D+ L A+AD A T R R + Sbjct: 58 PFDPQKPQAFRLPEESYILASGAADVLDAAITVPTLDAALADTVVSCALTGRKRELTAPL 117 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+E A + +G ++FG E +GL+ EE+ N +++ NP + SLN++QAV Sbjct: 118 QTPRELAPEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAV 177 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E + V +++ PAT ++ ++ ++E G+F +++ Sbjct: 178 QVVAYELYSQTEADLSHLVPQKH-PATHDQVAGMTAHMAELMDEIGFFN-RRNSPRIIRR 235 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L+++F R + E++ L+RG +T+ K + Sbjct: 236 LHNLFARAKPETEDIDLMRGFFNTVGKRLK 265 >gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB] gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB] Length = 263 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 7/252 (2%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L+ + + ++L P+ NIG AR N + +L +V+ R+ + E+ R S Sbjct: 9 PRIMNLKATLEHIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDRE-YRQEEIRQMST 67 Query: 63 N-ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + A V+DS+ F +L EA++ ++I TTAR V++P+E A + E I V Sbjct: 68 HLAADVVDSIVYFRDLGEALSGFNYIVGTTARLGLARGPVVSPREMAEQVIE-ISRDNEV 126 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++FG E GLTN+++ + ++S P + F SLN+S AV+++ +E S+ + V+ Sbjct: 127 ALLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYEI---SVAETGIPVR 183 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 A+ EL ++ L++ G+ P E + + + +F R L +EV ++RG Sbjct: 184 FTPKMASSRELEGMYGHIGALLQKIGFLNP-ENPEYWMMHIRRLFSRIRLQAKEVRIIRG 242 Query: 242 IVSTLDKFSRQS 253 I L + Sbjct: 243 ICRQLCWYLHHK 254 >gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2] Length = 267 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 5 RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARV 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113 L+EA+ + + AT R+ P+E +L + Sbjct: 65 VDTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDVRSVSEVDAGLTDNLP 124 Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++ Sbjct: 125 TSGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRV 184 Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 + A ++ L + E +L G+ P KK++ L +F R + Sbjct: 185 ALGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 243 Query: 231 LMREEVFLLRGIVSTL 246 L +EE+ +LRG+ + Sbjct: 244 LTQEEIHILRGVAKAM 259 >gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus oleovorans Hxd3] Length = 260 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 10/255 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVR 72 G IILV P++ ENIG RAM N L++L++V P + W + ++ +A V++ + Sbjct: 13 GITIILVRPRIPENIGACCRAMKNMGLSRLKVVAP-EAWDPVRIMKTATHACRDVVEKIE 71 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + A++ +I TTAR + VL+P A V ++FG E GL Sbjct: 72 IVGDTATAVSPFSYIAGTTARMGRQRQMVLSPGGFAEKAVTLCRE-NPVAVMFGPEDRGL 130 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NE++ + ++ P + F SLN++QAVL++ +E + + + Q A+ EL Sbjct: 131 ENEDLQYCHNLVHIPTS-EFSSLNLAQAVLVICYELFGAARPNQDHF---QPRLASSFEL 186 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D ++ L + RP + +++ R L +EV L+RG+ ++ + + Sbjct: 187 EGMYDQMKEVLLAIDFLRP-DNPDYWMNNFRRFVSRVGLTAKEVKLIRGVCRQVNWYGEK 245 Query: 253 SSRRNNVLLQKTEKS 267 R + L +K +K Sbjct: 246 --RYADGLAEKKKKD 258 >gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1] gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1] Length = 259 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 16/261 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+N + ++LV+P N+G VARAM NF + L L+NP + +AR+ S++A V Sbjct: 5 LRNLSLNIRVVLVEPMYQGNVGSVARAMKNFGYSDLVLMNPCE--LEGQARAMSSHARDV 62 Query: 68 IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIF 125 ++ R+ S L+EA+ + TT + + + P + E++ + ++F Sbjct: 63 LEGARIVSTLEEAVKGADLLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSGTIALLF 122 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GRE G +N+E+ + +++ P + ++P +N+S AV ++++E N Sbjct: 123 GREDNGFSNDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL--------SGLEGGSNP 174 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A +L +L+ LEE Y P KK K L I R L EV LRGI+ Sbjct: 175 LADGFDLQLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRK 232 Query: 246 LDKFSRQSSRRNNVLLQKTEK 266 ++ R +S LQK E Sbjct: 233 SERKMRLASGVET--LQKIED 251 >gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 14/249 (5%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN 76 +V+P N+G ARA+ ++L LV P+ D +A + ++ A V+++ R++ + Sbjct: 1 MVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTTQPEAIALASGALDVLENARIYPS 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTN 134 L+EA+A + +A TAR R+ ++AA + E + + ++ G ER GLTN Sbjct: 61 LEEALAPVTMAFALTARVRDLGPPPCDIRQAADLAREHLAGTAEGVAAVVLGTERAGLTN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQNT 185 +IAL + I P NP + SLN++QA+ L WE + S+ + Sbjct: 121 AQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVEQGAALLPASTAQEPSRGAE 180 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 PA+ + +FL + E +L + P KK++ + +F RP L R+EV ++RG+ + Sbjct: 181 PASGEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRPALTRDEVDMMRGVCTA 239 Query: 246 LDKFSRQSS 254 + +R++ Sbjct: 240 MLATARRNG 248 >gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 266 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 +L++ N+G ARA+ L LV PR + E+ ++ A V+D RV Sbjct: 4 RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDRARV 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113 L EA+ + + AT R+ P+E +L + Sbjct: 64 VDTLDEALEGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSIPAEDAGLTDNQP 123 Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + V +FG ER+G++N+++ + +S P NP F SLN+ A+ ++ ++ Sbjct: 124 TPGAVCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRA 183 Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 + A ++ L + E +L G+ P KK++ L +F R + Sbjct: 184 ALGGFPVVEHTPEVHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 242 Query: 231 LMREEVFLLRGIVSTL 246 L +EE+ +LRG+ + Sbjct: 243 LTQEEIHILRGVAKAM 258 >gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas vesicatoria ATCC 35937] Length = 293 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 9/264 (3%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P +P + S + +LV Q NIG ARAM +++L LV P E A Sbjct: 33 IAPQSPFMSVSQR-IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRR 90 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A+ V+ + +F L EA+AD + TAR R L P E A + Sbjct: 91 SAGAEDVLGNAPLFDTLSEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAE 150 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V +FGRER GLTN+E+ L +A + P +P F SLN++ AV ++ +E + + Sbjct: 151 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGGAEP 210 Query: 181 KEQNT------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 PA+ +L L +L+E + + + L + +R E+ + Sbjct: 211 VPAAASGLRDGPASHAQLEGMFGQLGETLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQ 269 Query: 235 EVFLLRGIVSTLDKFSRQSSRRNN 258 EV L+RGI+S + + + R N Sbjct: 270 EVRLIRGILSDAQRMAMLAKRAGN 293 >gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 230 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228 >gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 231 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 8/234 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 PVIILV PQ+GENIG ARAM NF L++LR+V PRDGWP+E+ARS++ A +ID+ ++ Sbjct: 2 NPVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + NL+E++ DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 YDNLEESVQDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+AL+N II+ F SLNI+QAV+++ +E N +++ ATK E+ Sbjct: 118 NKEVALANKIITINTT-EFSSLNIAQAVIIICYELFRN--FKPREDIHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246 FL L L++ +F+ +KK M ++ +IF R L EV L+GI+ +L Sbjct: 175 HFLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228 >gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 233 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 145/236 (61%), Gaps = 8/236 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IIL+ PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 5 NPIIILIAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 64 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 65 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA +N II+ F SLNI+QAV+++ +E NS + ++V ATK E+ Sbjct: 121 NEEIAFANKIITINTT-KFSSLNIAQAVIIICYELFRNS--TPREDVHNIQKLATKEEIE 177 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 178 HFLVNLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSLNQ 233 >gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus scotoductus SA-01] Length = 252 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 10/252 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVI 68 + I+LV+PQ N+G VARAM NF L++L LVNP R G P + +A + +A+ V+ Sbjct: 2 LERVRIVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVL 61 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGR 127 D +L EA+ + F+ ATT R R + V+ +E + + V ++FGR Sbjct: 62 DRAVAVESLGEALEGVSFVVATTGRPRELYPAPVVTAREVPAHV---LSVKGEVALVFGR 118 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E +GLTNEE+ L++ I + P P PSLN++QAV++ +E + + +E+ A Sbjct: 119 ETFGLTNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQAWLQQGSTVSQEE--LA 176 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L F L + E G+ + L IF + L EV LLRG++ Sbjct: 177 DVAALEGFFADLGRYVLEIGFTDEHRHP-YAMRRLRRIFHKARLSPGEVQLLRGLLHQSR 235 Query: 248 KFSRQSSRRNNV 259 + ++ Sbjct: 236 YAVASALKKEGT 247 >gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07] Length = 243 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ILV+P NIG ARA+ N +L +V PR +++A + +A ++D+ ++ + Sbjct: 11 FILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKTI-TKEAYYRAKSAKDILDNALIYES 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 +AI D + I AT+AR R + + + + S +N +IFGRE GL+NE Sbjct: 70 FDQAIEDKNLILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIFGREDNGLSNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + P + +PSLN+S A+ L+ +E + ++ SS E++ AT E Sbjct: 130 ELQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRKITLDSSILKSDERDI-ATNEENEKL 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L++L L++ ++ P K++ + + + L + E+ +LRG +S + F + Sbjct: 189 LEHLMEVLKKIDFYDP-RSSKQVKTRIERLLKKTRLDKMEMGILRGFLSKIMDFEK 243 >gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro] Length = 243 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++N + I+LV+P N+G VARAM NF T L LVNP +AR+ S++A V Sbjct: 1 MRNLSLKIRIVLVEPMYQGNVGSVARAMKNFGYTDLVLVNPCK--LEGEARAMSSHARDV 58 Query: 68 IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIF 125 ++ R+ S L+EA+ + TT + + + P + L ER+ + I+F Sbjct: 59 LEGARIVSTLEEAVKGANLRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSGTIAILF 118 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GRE G N+E+ + + + P + ++P +N+S AV ++++E + +S Sbjct: 119 GREDTGFRNDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYELSDMEGGNSP-------- 170 Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 A +L +++E LEE Y P KK K L I R L EV LRGI+ Sbjct: 171 LADGFDLQLLYEHMEKLLEEIDY--PPHKKDKTYLMLRRILGRAGLTPREVQTLRGIIKK 228 Query: 246 LDK 248 ++ Sbjct: 229 TER 231 >gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 249 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 103/248 (41%), Positives = 145/248 (58%), Gaps = 11/248 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A PVI+LV PQLGENIG ARAM NF LT++R+VNPRDGWP+ A ++A AD V+D Sbjct: 2 ANKPVIVLVRPQLGENIGKAARAMLNFGLTEMRIVNPRDGWPNPSAGPAAAGADIVLDEA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +VFS+ EA+AD +YATT R R K V+ P AA +++ I+FGRE G Sbjct: 62 KVFSSTAEAVADCEHVYATTVRKRGVTKPVVGPDGAARLIHAEP---GRHAILFGREASG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--------NSIVSSEKNVKEQ 183 L E++AL+ I++ P+NP F SLN++QAV+L +E +S + E Sbjct: 119 LETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSRIGREAEDASSDLVQPTAEDEA 178 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 PA + +L + + E L+ RGYF P +++ L S+ +P EV LRGI+ Sbjct: 179 LPPAPQDDLEGLIGHFEKLLDPRGYFLPESRREATARTLRSVLTKPGWNHLEVRTLRGIL 238 Query: 244 STLDKFSR 251 STL++ R Sbjct: 239 STLERPPR 246 >gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 231 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 149/234 (63%), Gaps = 8/234 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+IILV PQ+GENIG ARAM NF L +LR++ PRDGWP+E+ARS++ A +ID+ +++ Sbjct: 3 PIIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++L+E I DL ++YATT R K + + L S VGI+FGRE GL+N Sbjct: 63 NSLEECIKDLEYLYATTCIKRAINKDYVFSQN----LTSDYPSLAKVGIMFGRENNGLSN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEI+L+N II+ F SLNI+QAV+++ +E NS S +++ ATK E+ Sbjct: 119 EEISLANKIITINTT-EFSSLNIAQAVIIVCYELFRNS--ESREDIYNIQKLATKEEIDH 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTLD 247 FL +L L++ G+F+ E+K M ++ +IF+R L E+ +L+GI+ +L+ Sbjct: 176 FLTHLFGKLDKAGFFKIPERKLIMQQNITNIFMRINNLSTPEIQILQGIIKSLN 229 >gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 304 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 57 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 115 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 116 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 175 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 176 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 235 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 236 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 294 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 295 MAMLARQAEN 304 >gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrosomonas europaea ATCC 19718] Length = 246 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 10/249 (4%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P +P I+L NIG ARAM L++L LVNP+ +P +A + Sbjct: 1 MNPASP-----LDNVRIVLSHTSHPGNIGATARAMKTMGLSRLYLVNPK-SFPDSEADAR 54 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++NA +++S V ++L+EA+ D A TAR+R+ ++AA L R Sbjct: 55 ASNARDILESACVCTSLEEAMGDTFLAAALTARSRDLSHPTRNARQAAGELI-RYAHHHP 113 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEK 178 V ++FGRE GLT+ EI+ + P N + SLN++ AV +M +E V +++ Sbjct: 114 VALLFGRESAGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELRMVLEEGVVADE 173 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + PA+ E+ +LE + + G+ P + K+++ + +F R L +EEV + Sbjct: 174 PDPQLPEPASLQEIEGLHHHLEQVMVQSGFLDP-TQPKRLMRRMRRLFARTRLEKEEVNI 232 Query: 239 LRGIVSTLD 247 LRG+++ ++ Sbjct: 233 LRGLLTAVN 241 >gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08] Length = 245 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 140/237 (59%), Gaps = 1/237 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILVD QL EN+G+VAR+M+NF T L+LV+P+ WPSEKA + + +A ++++++V+ Sbjct: 6 ISIILVDTQLPENVGLVARSMYNFGFTNLKLVSPKLEWPSEKALAVAVDAKNIVENIKVY 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+L+EA++D + TAR R+ K + + E+ + ++G++FG E GLTN Sbjct: 66 SSLREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKIND-SIGVVFGGEASGLTN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 + ++L ++ + F SLN+S AV + + + + K ++ +L+ Sbjct: 125 DHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFKTEQLVDKNSEPHGSQNDLMY 184 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 F D+LE LE RG+F+P EK KM +L +IF R +L E+ LRG+V L ++ + Sbjct: 185 FFDHLEEELESRGFFQPEEKMPKMKQNLRNIFHRADLSEREIATLRGVVRVLSEYRK 241 >gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium NaphS2] Length = 253 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 5/241 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV PQ+ ENIG VARAM N L++L +V+P++ ++++ + V++ + Sbjct: 7 LENVAVVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDM 66 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + NL+EA+ ++ TTARN ++ P+ A L I G +V I+FG E G Sbjct: 67 DISRNLREALVPFQYLVGTTARNGTLRPALTQPRTLAQKLIP-ISQGNSVAILFGPEDRG 125 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+N+++ + I++ P F SLN++QAV+++ +E + E A E Sbjct: 126 LSNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYELFLAT--DGEHREPPVPRLANSFE 182 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L D+L L + G+ P + + L ++ R L EV ++RGI +D + Sbjct: 183 LEGMYDHLREMLSKIGFLDP-QNPEHWLLNIRRFLARVPLRAREVRIIRGICRQMDWYVS 241 Query: 252 Q 252 Q Sbjct: 242 Q 242 >gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805] Length = 244 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 3/240 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++LV+P N+G VAR NF + LRLV PR E+A + + V+ + Sbjct: 2 GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L EAI D + A+ R + + +A + E + SG V ++FGRE GL+ Sbjct: 62 FETLLEAIGDCQRVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGREDRGLS 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191 NEE+ LS ++ + +PSLN+S AV +++ + ++ + Q P A + + Sbjct: 122 NEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQRCKLLIRSDHPCPQLEPEAAAQPQ 181 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + + L E G+ P K + + + S+ R + +E+ +LRG+V L R Sbjct: 182 LDDCMQDAQELLLEAGFLLPHTAKAR-MAKIRSLLQRARIRPQELAMLRGMVRQLRWAIR 240 >gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105] gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105] Length = 269 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 12/249 (4%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68 S + I+LV N+G VARAM L LRLV P+ D +E+A S ++ A V+ Sbjct: 6 SLESISIVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVL 65 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + R+++ L EA+AD +A +AR R+ S+ +P+EAA SG +FG E Sbjct: 66 EQARIYNTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAE 125 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKN 179 R GL+N+E+ + N ++ NP++ SLN+SQAV ++ + + Sbjct: 126 RTGLSNDELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALRTEWAAGEFAVTDQGSLADS 185 Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 V++ AT + + ++E + P +K KK++ L + + L +EEV +L Sbjct: 186 VRQGGKLATVKAVADLQAHWLEAMEAVDFLNP-DKPKKVVQRLARMLAKTPLEQEEVDML 244 Query: 240 RGIVSTLDK 248 RG S + + Sbjct: 245 RGFFSDVIR 253 >gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM 6242] gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242] Length = 231 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 20/240 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P NIG VARAM NF + L LVNP + +AR+ +++A +++S + Sbjct: 7 IILVEPLYQGNIGSVARAMKNFGFSDLILVNPCELKM--EARAFASHAYDILESAKTVET 64 Query: 77 LKEAIADLHFIYATTAR-----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++EA+ + ATT + + P++ + + + +IFGRE G Sbjct: 65 IEEALEGSDLVIATTGITGMKIDEHIRMPPYTPRDLKVKFSGMS---GTIAVIFGREDHG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 TNEE+ LS+ I+S P + ++P +N+S AV ++++E + + +N+ A + Sbjct: 122 FTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEM--------SQILAGENSLADGFD 173 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L ++++ L++ Y P KK+K IF R +LM EV LRG + + K + Sbjct: 174 LRLLFEHIDEVLDDIDY--PAHKKEKTHLMFKRIFGRAQLMPREVQTLRGFIGKVQKHIK 231 >gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 248 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 131/236 (55%), Gaps = 5/236 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + P IIL PQLGENIG AR M NF LT LRLV PRDGWPS A + SA A V Sbjct: 3 RAPAIILHAPQLGENIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQVS 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF L+EA+ L + ATTAR R K+V +A L + ++FG E+ GL Sbjct: 63 VFETLEEAMTGLTYTIATTARPRGMEKAVFGAPDAVGALKRQAGQ---SAVLFGGEKSGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKG 190 NE +AL +AI+++PVNP F SLN++QAV + + ++ + + + PA + Sbjct: 120 PNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCHQWGASAGLEGKFDGTTEGLGAPALRE 179 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 EL+ ++ E LE GYF P EK M+ +L + +R + ++EV RG + L Sbjct: 180 ELIGMFEHFEAELERAGYFYPPEKTPVMVTNLRNALVRAQWTQQEVRTFRGAIKAL 235 >gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic] gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic] Length = 230 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 8/236 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA +N II+ F SLNI+QAV+++ +E + NS + ++V ATK E+ Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248 FL L L++ G+F+ +KK M ++ +IF R L EV L+GI+ +L++ Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVPTLQGIIKSLNQ 230 >gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 311 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 18/256 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL++ N+G ARAM L LV PR + E+ ++ A V+++ R+ Sbjct: 40 RFILINTSHAGNVGATARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLNNARI 99 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---------------IFSG 118 L EA+ + + AT R+ AP+ L R Sbjct: 100 VETLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQRP 159 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +V +FG ER+G+ NE++ + +S P +P F SLN+ AV L+ ++ E + Sbjct: 160 DSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWREALGGFGIQ 219 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 E+ A + L + E +L + G+ P KK++ L +F R +L EE+ + Sbjct: 220 AAIEEPRLADAAAVSGMLKHWEEALVDIGFLDPAS-PKKLMPRLNQLFNRAQLSPEEIHI 278 Query: 239 LRGIVSTLDKFSRQSS 254 LRG+ + + + + Sbjct: 279 LRGVAKAMMRHAPDKA 294 >gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 134/235 (57%), Gaps = 4/235 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV PQLGENIG ARAM NF LT+LR+V PRDGWP+ A ++A AD V++ VF Sbjct: 2 IVLVRPQLGENIGKAARAMLNFGLTRLRIVAPRDGWPNPSAGPAAAGADIVLEQAEVFDT 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD +YATT R R K V+ P+ AA + I+FG ER GL ++ Sbjct: 62 LADAVADCAHVYATTVRKRGVTKPVVTPEAAAREIIAAPGQ---CAIVFGPERSGLETDD 118 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL+ II+ P+NP F SLN++QAV+L +E +++ + + +E PA + E Sbjct: 119 VALARTIITVPINPEFASLNLAQAVILCAYEWSKHADL-VQPTAEELLPPAPQEEFEGMF 177 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L LE GYF P + L ++F + EV +RGI++TL + R Sbjct: 178 AQLTTMLEPLGYFEPEIRAPVTRRTLRTMFTKAAWNHLEVRTMRGILTTLARKPR 232 >gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGESEPAPAAATGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLAKQAEN 254 >gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium baculatum DSM 4028] Length = 248 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 4/239 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70 + +IL P+ ENIG VARA N Q+ LV P W KA + +A ++++ Sbjct: 2 LENIDVILFRPKYPENIGSVARACLNMGCGQIVLVEPW-NWDQGKALPLATHHAGHLLEN 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +R+ L EA+A F Y TTAR + + P+EAA + E+ +G V I+FG E Sbjct: 61 IRIHGTLAEALAPYSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDK 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATK 189 GLTNEE L N +++ P SLN+SQAV+++++EC + S+ K + ++ + Sbjct: 121 GLTNEETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAKPFKVAGQPKDRYISS 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E + L +L E + + + + L F R E LL G+ + + Sbjct: 181 EEREVLFNQLRETLIEIDFLNK-DNPEYFMLPLKRFFNRINPRLNEYNLLMGLCRQMRR 238 >gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 277 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 112/274 (40%), Gaps = 37/274 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL+ N+G ARAM L LV PR + E+ ++ A V+++ R+ Sbjct: 4 RFILIQTSHAGNVGAAARAMKTMGFGDLVLVAPRWSNVLRREETIQRASGALDVLENARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123 + L EA+ + + AT R+ +P+E L R + + Sbjct: 64 VATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLARRQSADAAHPLAELALEGGIA 123 Query: 124 ------------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 +FG ER+G+ NE++ + +S P NP F SLN+ Sbjct: 124 PVPPADADPVSAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGA 183 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 A+ ++ +E ++ + PA ++ L + E +L + G+ P KK++ Sbjct: 184 AIQVIAYEWRLALGGFPVRDAAPASVPADAAQVAGMLAHWERALVDVGFLDPA-APKKLM 242 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 L +F R + EE+ +LRG+ + + +R Sbjct: 243 PRLNQLFNRAQPTPEEIHILRGVAKAMSEAARAK 276 >gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 254 Score = 254 bits (650), Expect = 8e-66, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + + PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGQAERAPAAAPGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLAKQAGN 254 >gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118] Length = 286 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 35/265 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL++ N+G ARAM T L LV PR + E+ ++ A V+ + R+ Sbjct: 4 RFILINTSHAGNVGAAARAMKTMGFTDLVLVAPRWANVLRREETIQRASGALDVLKNARI 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL---------------------- 111 L EA+ + + AT R+ P+E +L Sbjct: 64 VDTLDEALEGITHLCATAMTPRDFGPPTATPREHFELLLNKERLTHIPRGLEADLAYKNE 123 Query: 112 ----------NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 + +G +FG ER+G+ NE++ + +S P +P F SLN+ AV Sbjct: 124 ILPETSELVQAAVAAPERGMGFLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAV 183 Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 ++ +E ++ + A ++ L +LE SL+ G+ P + KK++ Sbjct: 184 QVIAYEWRLALGAFPVQSATLEPVLADAAQVAGMLGHLEQSLQAIGFLDP-QAPKKLMPR 242 Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246 L +F R + +EEV +LRGI + Sbjct: 243 LNQLFNRAGVTQEEVHILRGIAKAM 267 >gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT 894] Length = 225 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 99/216 (45%), Positives = 146/216 (67%), Gaps = 2/216 (0%) Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 WP+EKA ++++ AD VI + +V+ L++A+ADL+F+YATTAR R+ +K V +P AA L Sbjct: 1 WPNEKALATASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETL 60 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ Sbjct: 61 RAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKS 120 Query: 172 SIVS--SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 + + TP+TK +L D LE +L+ RGYF P KK KM+D+L ++ R Sbjct: 121 GMEDVGAVPFQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRR 180 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTE 265 +E+ +LRG++S+LD+FSR+S R E Sbjct: 181 AFTEQEISVLRGVISSLDRFSRKSPRGGRFPTPAKE 216 >gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAVGEAEPAPAAASGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLARQAGN 254 >gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLARQAGN 254 >gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio africanus str. Walvis Bay] Length = 256 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 2/245 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++LV + ENIGM ARA N + L LV+P + + ++A+A +++SV Sbjct: 2 LDNLRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESV 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV L A+AD H ++ TTAR KS++ P EA + + G+ V ++FG E G Sbjct: 62 RVTHGLAAALADAHVVFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKG 190 L NEEI + +++ P SLN++QAVL++++EC S + + AT Sbjct: 122 LENEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQSQPAGHAAHDQVAERHATHA 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E + + ++ +L + +P + L + F + +L R E +L GI + + Sbjct: 182 EQEALMANIQETLSAIDFLKP-QNPDYWLLPVRRFFAKLDLRRSEFNMLMGICRQVRWIA 240 Query: 251 RQSSR 255 ++ + Sbjct: 241 GKAGK 245 >gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08] Length = 239 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 3/231 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ NIG ARAM + + L LVNP++ +PS ++ + + + V+D + N Sbjct: 9 FVLVETSHPGNIGACARAMNSMGICNLSLVNPKE-FPSTESETRAKSGKKVLDQANIHDN 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EAI + + T+AR+R+ ++ ++NE + + V I+FG E GL NE+ Sbjct: 68 LNEAINTSNLVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNED 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + P + SLN+S AV ++ E + S S + A+ + + Sbjct: 128 LGKCDFHLQIPTSED-SSLNLSHAVQIVAHEIYKGSSSSDLFTQAREVELASSQQKEKLI 186 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +++E+ LE ++ + K++ L + R +L + E+ +LRGI+S L+ Sbjct: 187 EHIELVLELLDFYD-HQNPKQVPARLRRLIKRMQLDKLEIGILRGILSNLE 236 >gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 254 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 8/249 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLGEAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRN 257 + + + Sbjct: 245 MAMLAKQAG 253 >gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum alkenivorans AK-01] Length = 251 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 9/245 (3%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSV 71 K I+L +PQ+ ENIG ARAM N L +L +V P+ EK + A A +IDS+ Sbjct: 8 KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPK-SLAQEKIYPMATAGARHLIDSM 66 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +LK A+ + +++ TTAR ++ K++ + A L V ++FGRE G Sbjct: 67 EVVDDLKTALKEFNWVVGTTARLGSHRKAM-TVENMAAKLISMTGE-NRVALVFGREDRG 124 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+ E++ L + +++ F SLN++QAVLL+ +E + S+K + A K + Sbjct: 125 LSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFKA---GSDKPRESTPKLANKFD 180 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + D L L + P E + +D++ F R L +V ++RGI +D ++ Sbjct: 181 LEAMYDQLSELLVRIDFINP-ENPEHWMDNIRRFFTRHPLTARDVKIVRGICRQVDWYTE 239 Query: 252 QSSRR 256 + ++ Sbjct: 240 RRFKK 244 >gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 239 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 6/241 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCV 67 ++A +LV N+G ARAM + L LV PR D E + ++ A + Sbjct: 2 STADPTRFVLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADI 61 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + RV + L EA+ + AT R+ AP+ L Q VG +FG Sbjct: 62 LVRARVVATLSEALEGVTHACATAMTPRDFGPRTHAPRALFPEL---AAGRQRVGFVFGS 118 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ER+GL+NE++ ++ +S P + SLN++QAV L+ ++ + A Sbjct: 119 ERYGLSNEDVYRCHSCLSIPTPADYGSLNLAQAVQLIAYDWRQALGGYPVTPRTPDPALA 178 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + LD+ + +L G+ P KK+L + + R +L EEV LLRGI +++ Sbjct: 179 DAAAVQGLLDHWQRALVHIGHLDPA-APKKLLPRVNQLLNRAQLTEEEVHLLRGIATSML 237 Query: 248 K 248 K Sbjct: 238 K 238 >gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 8/249 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLGEAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRN 257 + + + Sbjct: 245 MAMLAKQAG 253 >gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus DSM 9946] Length = 253 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 16/259 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKAR 58 P L +S + ++LV PQ N+G VARAM NF L L LV P + + KA Sbjct: 3 PSLLDSIR---VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAKAY 59 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFS 117 + A+ ++D R L EA+ D + TT R+R+ + S+++P+ + + Sbjct: 60 HLAVRAEVILDQARRSKTLLEAVQDCVLVVGTTVRSRDVYPGSLVSPRTLTPQVLKAAQR 119 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G V ++FGRE +GLTN+E+ L+ I+ P P +LN++QAVLL+ +E + E Sbjct: 120 G-KVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYELFIGAENPPE 178 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + PAT+ L + D LE + E G+ P + L I + L EV Sbjct: 179 ---PPADQPATRDALEALFDDLERYVLEIGFTDP-RRLPYTRRRLRRILHKATLTDPEVK 234 Query: 238 LLRGIVSTLDKFSRQSSRR 256 +LRG + +++ + Sbjct: 235 MLRGFLHQSRWYAKHGKNK 253 >gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 231 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 5/227 (2%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLK 78 + N+G ARAM T L LV PR D E+ + ++ A V+ R+ + L Sbjct: 2 ETSHAGNVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLA 61 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 EA+ + AT R+ AP+ L R V +FG ER GL N+++ Sbjct: 62 EALDGVTHACATAMTPRDFGPPTAAPRPHFAELAAR--GDDRVAFVFGPERTGLANDDVY 119 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 + +S P +P + SLN++QAV ++ ++ + A + L++ Sbjct: 120 RCHVCLSIPTHPDYGSLNLAQAVQILAYDWRQAQGGFPVVARTADPRLADAAAVQGVLEH 179 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 + +L E G+ P E KK++ L + R L EEV +LRGI Sbjct: 180 WQRTLVEIGFLDP-EAPKKLMPRLNQLANRMRLTHEEVQILRGIARA 225 >gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 254 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLARQAEN 254 >gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri ATCC 19865] Length = 255 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 9/251 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ VF Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPERA-LDEDAYRRSAGAEDVLGDAPVF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P A + V I+FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PA 187 +E+ L +A + P +P F SLN++ AV ++ +E + + + T PA Sbjct: 126 DELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLAQLEAGQAEPAPAATTGALREGPA 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + +L L +L++ + + + L + +R E+ +EV LLRGI+S Sbjct: 186 SHAQLEGMFAQLGETLDDIDF-HKGRAPESAMRKLRRLLLRTEMSEQEVRLLRGILSDAQ 244 Query: 248 KFSRQSSRRNN 258 + + + R N Sbjct: 245 RMAMLAKRAGN 255 >gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM +++L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L EA+AD + TAR R L P E A + V +FGRER GLTN Sbjct: 66 ATLGEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188 +E+ L +A + P +P F SLN++ AV ++ +E + + E ++ PA+ Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L L +L+E + + + L + +R E+ +EV L+RGI+S + Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244 Query: 249 FSRQSSRRNN 258 + + + N Sbjct: 245 MAMLARQAGN 254 >gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1] Length = 255 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 122/259 (47%), Gaps = 12/259 (4%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ AP +A+ ++LV P+ NIG ARAM N + LR+V PR + +A + Sbjct: 1 MSSAAPS--PTAQSLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAM 58 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +A ++ S +++ L+EA+AD T+AR R + + P + ++ E Sbjct: 59 AVHAGDLLRSAKIYPTLREALADRDLSVGTSARIRADLPAPRHPAQVRGLVREAAAP--- 115 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FG E GL N ++ + P + SLN++QAVLL+ +E ++ E + Sbjct: 116 -ALVFGPEETGLINSDLEQCQVTVRIPT-GDYASLNLAQAVLLVCYEFLQGQDDVPEHSR 173 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + AT+ ++ + +L+ ++ GY + + + ++ R + E + R Sbjct: 174 QT----ATREDMEAMYGHLQDTMHLIGYTD-AVRGRHTMRLWRAMLDRALMSSAESRMFR 228 Query: 241 GIVSTLDKFSRQSSRRNNV 259 G++ + Q S + + Sbjct: 229 GLLRQVKWKVEQGSGKAST 247 >gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio salexigens DSM 2638] Length = 246 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 4/247 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70 I+L + EN+G ARAM N L LV P W EKAR + +++ Sbjct: 2 LDNLSIVLFGTKFPENVGSSARAMTNMGCENLTLVRP-ASWDMEKARPLATVKGRDIVEK 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L EA+ D +Y TTAR K V+ P AA ++ E++ +G+ V ++FG E Sbjct: 61 ALIADELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDR 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATK 189 GLTN+E L + +I+ P + SLN+SQAVL++++EC +N++ + P + Sbjct: 121 GLTNDETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKNALDKPFTPAGPPEERPTSF 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E L+ +L + + + + + ++ R E LL GI + Sbjct: 181 EEQEILASNLQETLLAIDFL-KADNPDYWMMPVRRFMSKIDIKRNEFNLLMGICRQIKWI 239 Query: 250 SRQSSRR 256 + Q+ ++ Sbjct: 240 AGQAGKK 246 >gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 258 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 12/254 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM LT+L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+AD + TAR R LAP A + V I+FGRER GLTN Sbjct: 66 ETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----------VSSEKNVKEQN 184 +E+ L +A + P +P F SLN++ AV ++ +E + + + + Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAQAAPAADSAGPRE 185 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+ ++ L +L+E + + L + +R E+ +EV LLRGI++ Sbjct: 186 LPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRGILA 244 Query: 245 TLDKFSRQSSRRNN 258 + + + + Sbjct: 245 DAQRMAGLARQAGT 258 >gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 250 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 8/236 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ N+G ARA+ LRLVNP+ D +A + ++ A V+++ V Sbjct: 12 VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L++A+ + + T+R+R L + A +++E + + V ++FG ER GL NE Sbjct: 72 SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-----TPATKG 190 +AL + NP +PSLN++QA+++ + E ++ + + A Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALRETFENRTQTTLTSADINDGVDFADPI 191 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + L++ LE GY P KK++ ++F R L +EE+ LLRGI + Sbjct: 192 AVAAMLEHWREGLEAIGYLDPAH-PKKLMPRFQALFARSRLRKEEIDLLRGIAKQM 246 >gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 244 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 20/242 (8%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M L++L LV+P+ +P ++ +A A +++ V + L+EAI D H ++ T+AR+ Sbjct: 1 MKTMGLSKLVLVSPK-TYPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +L + A+ + GQ + I+FGRE GLTNEE+AL+N ++ PVN + Sbjct: 60 RTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGV 119 Query: 155 LNISQAVLLMVWECMENSIVSSE-------------KNVKEQNTPATKGELLSFLDYLEI 201 LN++QA+ ++ +E + + E ++++ T+ ++ F +LE Sbjct: 120 LNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEK 179 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD-----KFSRQSSRR 256 L E + P E + + L +F R +L R E LLRGI S + K+ + SS + Sbjct: 180 MLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDK 238 Query: 257 NN 258 + Sbjct: 239 ED 240 >gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 266 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 20/266 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 +L++ N+G VARAM L LV PR WP+ E+ ++ A ++ Sbjct: 4 RFVLINTSHAGNVGAVARAMKTMGFDDLVLVAPR--WPNVLRHEETIQRASGALDLLRQA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----------- 120 R+ + L +A+ + + AT R+ P+ L ++ + Sbjct: 62 RIVAGLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLKKERPVHDSSAPAATRPTG 121 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEK 178 V +FG ER+G++N ++ + +S P P F SLN+ AV ++ +E + Sbjct: 122 VAFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWRMALDGCGLAVP 181 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 + A ++ L++ E +L + G+ P KK++ L +F R +L EE+ + Sbjct: 182 DGTPARHLADAVQVAGMLEHWEQALTQIGFLDPA-APKKLMPRLQQLFNRAQLAPEEIHI 240 Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKT 264 LRGI + ++ + +R + +T Sbjct: 241 LRGIAKAIIATAQANRQRPSPSSDET 266 >gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 258 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 12/254 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV Q NIG ARAM LT+L LV P E A SA A+ V+ +F Sbjct: 7 IRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDAPIF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+AD + TAR R LAP A + V I+FGRER GLTN Sbjct: 66 ETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTN 125 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----------VSSEKNVKEQN 184 +E+ L +A + P +P F SLN++ AV ++ +E + + + + Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAPAAPAADSAGPRE 185 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PA+ ++ L +L+E + + L + +R E+ +EV LLRGI++ Sbjct: 186 LPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRGILA 244 Query: 245 TLDKFSRQSSRRNN 258 + + + + Sbjct: 245 DAQRMAGLARQAGT 258 >gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.] Length = 256 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 8/248 (3%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVID 69 ++ I++V P+ ENIG ARAM N + L +V+P + + EK R + + VID Sbjct: 5 NSDNITIVMVRPRFPENIGSSARAMLNMGIRNLVVVSP-ENYDLEKIRKLGTHFSSDVID 63 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +++F NLKEA+A +++ TTAR + P A L + + + I+FG E Sbjct: 64 GIQLFENLKEALASYNYVVGTTARLGGERAILSTPSGMAERLAD-LSQNNKIAILFGSED 122 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL NE+I L + +I+ P + F SLN+SQAVLL+ +E + E+ K A++ Sbjct: 123 RGLVNEDIRLCHELINIPSS-DFSSLNVSQAVLLVCYELF---LAGIEEKTKYSPRLASR 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL + ++ L Y E ++ L F R +L EV ++RGI +D + Sbjct: 179 HELDGMYEQVKDILVRIDYINN-ENPDYWMNKLRHYFTRLKLRAGEVSIIRGICRQIDWY 237 Query: 250 SRQSSRRN 257 + S ++ Sbjct: 238 GKSSYKKG 245 >gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Burkholderiales bacterium 1_1_47] gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella excrementihominis YIT 11859] Length = 265 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 15/266 (5%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSAN 63 +LV P NIG ARA+ +L +V+PR + A + S + Sbjct: 1 MDFLPQRGRIRFVLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTH 60 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSGQN 120 A V+ + L EA+ D+ F A + +R + E E + Sbjct: 61 AVDVLQNSVCTETLLEALKDVSFACALSGYDREFGPPLADLQTSCEMVKTCLEE-NPQEE 119 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSE 177 + +FG ER GLTNEE+ L + P NP SLN++QAV + ++ + + + Sbjct: 120 IAFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAH 179 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + E PA+ + ++LE ++ G P E+ K M+ L I R L +V Sbjct: 180 ASRFEGEAPASVEAIEGLYEHLEEAMIACGALNP-ERPKLMMPKLKRILSRSGLSVPDVD 238 Query: 238 LLRGIVSTL-----DKFSRQSSRRNN 258 +LRGI + + ++ R+S + Sbjct: 239 MLRGICAAIICPRAERSGRKSKKDGQ 264 >gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus hydrothermalis DSM 14884] Length = 235 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV P+ N+GMVARAM NF L +L LV P + +A S+ A V++ R+ Sbjct: 2 IRVVLVGPREAANVGMVARAMKNFGLKELVLVAP-EIRDMSEAYRLSSRAHDVLERARIV 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EAIAD + TTAR R + + A AA L + V ++FGRE +GL N Sbjct: 61 PTLDEAIADCVLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENFGLFN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ + ++ P P + SLN++QAVLL+ +E + S+ + PA L + Sbjct: 121 EELDRCHYVLHIPTAPDYASLNLAQAVLLVAYELFQ-----SQAGALPETDPAPAASLEA 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + LE L E GY P ++ + + L EEV +LRG++ + Sbjct: 176 YFRDLEAYLIEIGYTDPPRLP-SVMRHFRRMAHKALLTEEEVRMLRGLLRQSRWAMGRR 233 >gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 277 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 41/276 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ Sbjct: 4 RFILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WPNVLRREETIQRASGALDVLENA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI-------- 123 R+ + L EA+ + + AT R+ +P+E L R + + Sbjct: 62 RIVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGG 121 Query: 124 --------------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 +FG ER+G+ NE++ + +S P NP F SLN+ Sbjct: 122 VAPVPPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNL 181 Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217 A+ ++ +E ++ + PA ++ L + E +L + G+ P KK Sbjct: 182 GAAIQVIAYEWRLALGGFPVRDAAPASAPADAAQVAGMLAHWERALVDIGFLDPA-APKK 240 Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 ++ L +F R + EE+ +LRG+ + + ++ Sbjct: 241 LMPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAQAK 276 >gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM 1279] gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM 1279] Length = 257 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 14/258 (5%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--------RSSS 61 + + I+LV Q NIG ARAM NF ++ L LV P + A + Sbjct: 2 DWLENIRIVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPGGSLAYRLA 61 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQN 120 +A+ V+D +RV L EA+AD + TT R R + V+ P+ A+ + + G Sbjct: 62 VHAEDVLDRMRVVDTLPEAVADARLVVGTTVREREIYTGPVVGPRPMALRVAQVAPRG-R 120 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++FGRE GLT +EI LS I+ P +P PSLN++QAVLL+ +E V+ Sbjct: 121 VAVVFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYEIF---GVAQAPPP 177 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 E A++ L D L+ + G+ ++ + + + L EV LLR Sbjct: 178 PEPLQLASQAALQQLFDDLKEYILRIGFTD-EKRLPYAVRRFRRLLHKARLTPGEVQLLR 236 Query: 241 GIVSTLDKFSRQSSRRNN 258 G + +++ R+ + Sbjct: 237 GFLHQSRWYAQHGRRKTD 254 >gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus Y51MC23] Length = 244 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 132/255 (51%), Gaps = 16/255 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANA 64 ++ + ++LV+PQ N+G VARAM NF L +L LVNP R G P + +A + +A Sbjct: 1 MREALSRVRVVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHA 60 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGI 123 + ++D +L EA+AD+ + ATT R R + + + P A + R+ S + V + Sbjct: 61 EEILDRAVAVDSLMEALADVELVVATTGRPRKLYPAPVVP---AWEVPARVLSVEGEVAL 117 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FGRE +GLTNEE+AL++ I + P P PSLN++QAV++ +E + + Sbjct: 118 VFGRETFGLTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELFKAVGEGRF----PR 173 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A L +F + L + E G+ + + L IF + L EV +LRG++ Sbjct: 174 EELAQVAALEAFFEDLGRYVLEIGFTD-QNRFPHAMRRLRRIFHKARLTPGEVQMLRGLL 232 Query: 244 STLDKFSRQSSRRNN 258 SR R+ + Sbjct: 233 HQ----SRYQMRKKD 243 >gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72] Length = 242 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 4/238 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+L NIG ARAM L+QL LV P + +P A + ++ AD ++ + Sbjct: 6 ALDRVRIVLSRTSHPGNIGAAARAMKTMGLSQLWLVAP-ESFPDPVADARASGADDLLRN 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV +L EA+A A TAR R + AA+ L G +V ++FG E Sbjct: 65 ARVVGSLAEALAGTVLAAAVTARRRELALPRRDARAAAVELLRFAEQG-DVALVFGNETS 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+NE++ L +S P NP F SLN+ AV L+ +E ++ + + AT Sbjct: 124 GLSNEDVLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMRMAAL-QPQLDADPAPRLATHD 182 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E+ FL +LE ++ E G+ P +++L L +F R L +EEV +LRG++S+ + Sbjct: 183 EVEGFLQHLEQAVTESGFHEP-SNPRRLLPRLRRLFGRVRLEKEEVGILRGMLSSFQR 239 >gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571] gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus petrolearius DSM 11571] Length = 247 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 16/240 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L +P NIG AR M NF L L+NP D ++AR+ S++A V+++ Sbjct: 1 MPEIEIVLCEPLYEGNIGFAARVMKNFGFYNLTLINPPDI--GDEARARSSHARDVLENA 58 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129 R ++L E I + + + ATT ++ ++ P L + I + V IIFGRE Sbjct: 59 RHVTSLDEVIEESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGREN 118 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188 WGL+NEEI + I + P +P +P +NIS AV ++V+E N+ P A+ Sbjct: 119 WGLSNEEIMKCDIICTIPTSPEYPIVNISHAVGVIVYEL---------ANIPRGTYPMAS 169 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + E+ +F D+L+ L+ P K++ L + IF R L EV + GI+ ++ Sbjct: 170 RIEVDAFYDHLDRFLDTIN--HPDYKRENTLTMMRRIFGRTNLTIREVSTMHGILRRTEQ 227 >gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8] gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27] gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 244 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 14/252 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVI 68 + I+LV+PQ N+G VARAM NF L++L +VNP R G P +++A + +A+ V+ Sbjct: 1 MERVRIVLVEPQEPMNLGAVARAMRNFGLSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVL 60 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGR 127 + +V +L EA+ + ATT R R + + +AP A + +R+ + V ++FGR Sbjct: 61 EKAQVAGSLLEALRGAQLVVATTGRPREVYPAPVAP---AWEVADRVAAFPGEVALVFGR 117 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E +GLTNEE+ L++ I P P PSLN++QAV++ +E + ++E PA Sbjct: 118 ETFGLTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQ--GKGVGLREGGEPA 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 L +F L + E G+ + + L IF + L EV +LRG++ Sbjct: 176 PVEALEAFFQDLGRYILEIGFTD-ERRFPYAMRRLRRIFHKAGLTLGEVQMLRGLLHQ-- 232 Query: 248 KFSRQSSRRNNV 259 SR + RR + Sbjct: 233 --SRFAQRRKDD 242 >gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 246 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 3/240 (1%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + K ++LV+P N+G VAR NF + QLRLV+PR + + ++++ Sbjct: 4 NLKNIRVVLVEPLGEINLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDLLEN 63 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ SNL EAI D + AT R + + + E A+ + S + IIFGRE Sbjct: 64 AQIHSNLLEAIDDCVRVVATCGRIDHGEIPLHS-SETALNWLLQGSSKDPIAIIFGREDR 122 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATK 189 GL+N+E+ L+ +I+ P + +PSLN+S AV +++ + + KE ++ +T Sbjct: 123 GLSNQELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQKYEYSIKNKELHSLSTP 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 EL + LD E L E G+ K + + + + R E+ EEV L+RGI+ F Sbjct: 183 KELSNCLDQTEDFLLEIGFLHKHTSKSR-MSKIKGLLQRAEVRSEEVALIRGILRQTKWF 241 >gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50] gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50] Length = 258 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 22/256 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+ P N+G ARA+ +L LV PR D +A + ++ A Sbjct: 1 MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGAL 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123 V++ V L+EA+A + +A TAR R+ +EAA + + V I Sbjct: 61 DVLERAAVHDTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G ER GLTN +I L + I P NP + SLN++QA+ L WE + + + + Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQPL--- 177 Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 PA+ + + + L + E +L G+ P KK++ + + R Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235 Query: 231 LMREEVFLLRGIVSTL 246 L R+EV +LRG+ + + Sbjct: 236 LSRDEVDMLRGVCTAM 251 >gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581] gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581] Length = 244 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 9/230 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV NIG ARAM LT L LVNPR +P +A +A A+ V+D Sbjct: 2 LSNIRIVLVQTYHPGNIGASARAMKTMGLTDLVLVNPRC-FPDPEASRLAAGAEDVVDQA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV ++L EA+AD + +AR R+ P E A L + V ++FGRER+ Sbjct: 61 RVVTSLSEAVADCVQVVGASARLRSYPLPHYDEPAEMATSLVDNARE-APVALVFGRERF 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTP 186 GLTN+EI + +S P NP + LN+SQAV ++ +E + Sbjct: 120 GLTNDEIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRLPDSDYQHPRHASVPL 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 T+ +L F D+L ++ G+ + + L ++F R + R ++ Sbjct: 180 PTRQQLGHFHDHLSRVMQASGFITQPHA--RTEEQLRALFDRAQPTRRDI 227 >gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1] gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1] Length = 275 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 39/267 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 +L++ N+G ARA+ L LV PR WP+ E+ ++ A V+ + Sbjct: 4 RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPR--WPNVLRKEETIQRASGALDVLGNA 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-------------AIVLNERIFSG 118 RV L+EA+ + + AT R+ P++ A +++ Sbjct: 62 RVVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEA 121 Query: 119 QN-------------------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 V +FG ER+G++N+++ S+ +S P NP F SLN+ Sbjct: 122 APPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGA 181 Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219 A+ ++ +E + A ++ L + E +L G+ P KK++ Sbjct: 182 AIQVVAYEWRQALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPA-APKKLM 240 Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTL 246 L +F R +L EE+ +LRG+ + Sbjct: 241 PRLNQLFNRSQLTAEEIHILRGVAKAM 267 >gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella muelleri ATCC 29453] Length = 268 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 119/260 (45%), Gaps = 21/260 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---------------- 49 P + + IIL NIG ARAM L+QL LV P Sbjct: 2 PAVPDYLANIRIILSRTSHPANIGSAARAMKTMGLSQLVLVAPNLMATPMTTEPPEFSAE 61 Query: 50 ---DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 E++ ++ A +++ ++ + L EA+ A T+R R + P+E Sbjct: 62 HADTFRLPEESFILASGAVDILERAKIVATLPEALVGTTLSCALTSRRRELTAPLQTPRE 121 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L +GQ V ++FG E +GL+ +E+ N +++ NP + SLN++QAV ++ + Sbjct: 122 LTPNLLAAAQAGQQVALVFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCY 181 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + E++ AT ++ + +LE ++E +F +++M+ L+S+F Sbjct: 182 ELFSQVNADMSHLIPERH-LATADQVSGMVQHLEKAMEHLDFFH-HRNQERMIRRLHSLF 239 Query: 227 IRPELMREEVFLLRGIVSTL 246 R + E++ +LRG + + Sbjct: 240 NRADTTTEDIDILRGFYNKI 259 >gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus UQM 2246] Length = 269 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 8/267 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + ++LV P N+G AR M NF L+ L LV P AR + + V Sbjct: 1 MTDLLTRCRVVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAV 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIF 125 +D+ RV +L +A++D F AT++ F+S + E L +G V ++F Sbjct: 61 LDAARVVPDLGDALSDCVFSLATSSLTAGVFRSGTIGTAAEQMPELLAAAEAG-PVAVVF 119 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVK 181 G E GL+NEEI + +++ P +P SLN++QAV + +E + + K Sbjct: 120 GPEPHGLSNEEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSKRLNDARGKPEI 179 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + A + ++L +L E GY EK ++ + + R +EV +L G Sbjct: 180 PERAVAPFADQDRMFEHLRHALTEVGYLF-GEKGDSLMHAIRQLVGRAMPTPQEVKILHG 238 Query: 242 IVSTLDKFSRQSSRRNNVLLQKTEKSE 268 + L SRQ R + + ++ + Sbjct: 239 LARQLLWASRQMKRDGDTDAPEADRRD 265 >gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 221 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 2 NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEEIA +N II+ F SLNI+QAV+++ +E + NS + +++ ATK E+ Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDIHNIQKLATKEEIE 174 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLL 239 FL L L++ G+F+ +KK M + +IF R L EV L Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQSITNIFTRINSLSSPEVQTL 221 >gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I] gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I] gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS] Length = 258 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 22/256 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+ P N+G ARA+ +L LV PR D +A + ++ A Sbjct: 1 MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGAL 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123 V++ V L+EA+A + +A T R R+ +EAA + + V I Sbjct: 61 DVLERAAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G ER GLTN +I L + I P NP + SLN++QA+ L WE + + +++ Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSL--- 177 Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 PA+ + + + L + E +L G+ P KK++ + + R Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235 Query: 231 LMREEVFLLRGIVSTL 246 L R+EV +LRG+ + + Sbjct: 236 LSRDEVDMLRGVCTAM 251 >gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 266 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 7/242 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVI 68 ++LV + EN+GMVARA N + LV+P DG P++ ++ ++ Sbjct: 4 NLTVVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDIL 63 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 VRV L EA+AD ++ TTAR + +L+P+ AA + G V ++FG E Sbjct: 64 SGVRVVGTLAEAVADCAVVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVFGPE 123 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPA 187 GLTN+EI + +++ P P SLN++QAVL++++EC++ + + A Sbjct: 124 DRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYECLKGTATHPFRPGPAPDSRLA 183 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 EL D L +L Y R + + + R L R E L+ G+ + Sbjct: 184 NHAELELLHDTLRDTLLAIDYLR-ADNPDYFMMPVRRFLGRTRLRRHEFDLVMGVCRQVK 242 Query: 248 KF 249 + Sbjct: 243 RM 244 >gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 254 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 9/247 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 IL++P N+G ARA+ +L LV PR + ++ ++ A+ V++ R+ Sbjct: 8 RFILIEPSHAGNVGAAARAIKTMGFEELVLVRPRWANVLRRQETIERASGANDVLNRARI 67 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWG 131 L EA+ + + AT R+ AP+E Q + +FG ER+G Sbjct: 68 VETLDEALDGMTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERYG 127 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTPA 187 + NE++ ++ +S P +P F SLN++ A+ ++ +E + + A Sbjct: 128 MKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQALSARFGGFEIAPATAPSVLA 187 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 ++ L +LE +L + P KK++ L ++F R +L +EEV +LRG+ + Sbjct: 188 DAPQIAGLLTHLEQALVAVDFLDPA-APKKLMPRLNALFNRAQLTQEEVHILRGVAKAML 246 Query: 248 KFSRQSS 254 + + ++ Sbjct: 247 ETAARAK 253 >gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio fructosovorans JJ] Length = 274 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 2/249 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L P+ EN+G ARA N +++L LV P +++ +++ + Sbjct: 26 LENLSIVLFRPKFSENVGAAARACANMGVSRLLLVEPSAFDLDRARPMATSKGGLLLEKL 85 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L EA+A ++ TTAR ++ P++AA + +G V ++FG E G Sbjct: 86 EFYPTLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAAGGKVAVVFGPEDAG 145 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190 L+N E L +++ P + SLN++QAVL+M +E + + + T Sbjct: 146 LSNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFKAATGHVGEPAGPTPARTVTHA 205 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E + L +L + +P + + + R L R+E LL G+ + Sbjct: 206 EREALFAALRRTLLSIDFIKP-DNPDYWMLPVRRFIDRVGLKRQEYSLLMGVCRQIKWAL 264 Query: 251 RQSSRRNNV 259 +++ Sbjct: 265 GSGGKKDQA 273 >gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16] gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16] Length = 299 Score = 244 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 6/242 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCV 67 N+ +LV+ N+G VARA+ L LV+PR D A + ++ AD V Sbjct: 45 NAFGRVRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDV 104 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + + A+A A TAR+R L P+ AA + + V +FG Sbjct: 105 LAGALIVDQVDAALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGN 164 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQN 184 ER+GL NE + NA+ P NP + SLN++QAV L+ +E + ++ N+ Sbjct: 165 ERYGLPNEVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMRLALLEAAPDAGANIGYAG 224 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 PAT ++ + +L+ LE G+ P ++++ L + R L REEV +LRGI Sbjct: 225 EPATAEQVEAMFGHLQTGLEAIGFLDP-SNPRRLMTRLRRLLARSGLEREEVNILRGIAK 283 Query: 245 TL 246 + Sbjct: 284 HM 285 >gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822] gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis] Length = 258 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 22/256 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 + + I+ P N+G ARA+ +L LV PR D +A + ++ A Sbjct: 1 MTQAFSRVRFIMTQPSHPGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGAL 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123 V++ V L+EA+A + +A TAR R+ +EAA + + V I Sbjct: 61 DVLERAAVHDTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G ER GLTN +I L + I P NP + SLN++QA+ L WE + + +++ Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSL--- 177 Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230 PA+ + + + L + E +L G+ P KK++ + + R Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235 Query: 231 LMREEVFLLRGIVSTL 246 L R+EV +LRG+ + + Sbjct: 236 LSRDEVDMLRGVCTAM 251 >gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 3/248 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+P+ ENIGMVARA N + +L +V P P + ++ V++SV Sbjct: 3 LENVAVVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATPKGVPVLESV 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L A+A + TTAR + +L+P+ AA V+ + + +G V I+FGRE G Sbjct: 63 RHEDTLAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRG 122 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190 LTNEE + + +++ P + SLN++QAVL++++EC + S K+ + T Sbjct: 123 LTNEETEVCSRLVTIPTSEA-SSLNLAQAVLILLYECFKLSDARPFHKSAGALSRVVTHE 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E L+ +L + Y R + + + + L R E +L GI + + + Sbjct: 182 EQEILFAALQDTLLDIDYLR-EDNPDYFMLPVRRFMQKASLRRHEFDMLMGICRQVRRLA 240 Query: 251 RQSSRRNN 258 R ++ + + Sbjct: 241 RVAAEKED 248 >gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] Length = 258 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + GPV IL P G N+G RA+ N LRLV PR +P + +A Sbjct: 6 MNEPLSGPVFILDHPSHGGNVGAALRAITNMGFEHLRLVRPR-FFPHPDVEAWAAGTAAR 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126 I +++VF +L A ADL+ + A T R R V++P+E + L ++ + VGI+FG Sbjct: 65 IPTIQVFDSLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPKQQLASSRVGILFG 124 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQN 184 ER GL ++ + I + P + SLN+SQAV+L+ +E M + + + + Sbjct: 125 TERTGLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELMLGQGLGEVPVHDPQRDD 184 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A++ E++ F D+L+ L + + +P ++ K+M+ L ++F R L R E+ +LRGI++ Sbjct: 185 ALASQDEMVRFFDHLQDVLMQIDFIQP-DRYKQMMGTLKALFNRAALDRREITILRGILT 243 Query: 245 TL 246 + Sbjct: 244 EV 245 >gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii 2AN] Length = 283 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 32/267 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71 IL+ N+G ARAM L LV PR WP+ E+ ++ A V+++ Sbjct: 19 RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLENA 76 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-------------- 117 R+ + L EA+ + + AT R+ AP+ +L +R + Sbjct: 77 RIVATLDEALDGMSHLCATAMTPRDFGPPTAAPRAHFEMLLKRERATLNGQALQAQNASN 136 Query: 118 -----------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V +FG ER+G+ NE++ + +S P NP F SLN+ A+ ++ + Sbjct: 137 PDAAGPEAAGAEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAY 196 Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + + + A ++ L + E +L G+ P KK++ L +F Sbjct: 197 EWRQALGGFAVQAATPDRVQADAAQVAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLF 255 Query: 227 IRPELMREEVFLLRGIVSTLDKFSRQS 253 R +L EE+ +LRG+ + + ++ Sbjct: 256 NRAQLGAEEIHILRGVAKAMIEAAQAK 282 >gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus neapolitanus c2] Length = 271 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P +P + I+L N+G VARAM N L +L LV+P+ ++A +++ Sbjct: 10 PDSPDVHADR--IQIVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTAI-DDQALATAK 66 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 +A ++++ R NL +A+AD ++ATTAR R+ V++ ++AA + +G + Sbjct: 67 HAADILNTARQVDNLPDALADSVEVWATTARPRDLHLPVMSARDAAETIAASPSTG-VIS 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNV 180 I+FG ER GLTN+EI+ + II P NP +P LN+ QAV ++ +E + S+ + Sbjct: 126 IVFGAERTGLTNQEISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWRMAHGTARSAPQPN 185 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYF--------RPVEKKKKMLDDLYSIFIRPELM 232 + AT + +F L L+ +F +++++ L + R Sbjct: 186 IDSTELATTAQWAAFEKRLTEQLDRTSFFHRTGSAEKDIAANRERLMARLRVLCRRANPT 245 Query: 233 REEVFLLRGIVSTL 246 R E+ +++GIV L Sbjct: 246 RNELAVMQGIVRAL 259 >gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07] Length = 243 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 4/236 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ILV+P NIG ARA+ N +L LVNPR +E+A + +A ++++ ++ + Sbjct: 11 FILVEPSHPGNIGACARAIKNMGFKKLALVNPRKKI-TEEAFHRAKSAKDILENTVIYKS 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNE 135 AI D + I AT+AR R + + + +I + GI+FGRE GL+NE Sbjct: 70 FDLAIGDKNLILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNGLSNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + + P + + SLN+S A+ ++ +E + + E + E Sbjct: 130 ELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRKIVFDNKILKT-EVREVVSNLENEKL 188 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L++L L++ ++ P K++ + + + L + E+ +LRG +S + F + Sbjct: 189 LEHLMEVLKKIDFYDPKSS-KQVKTRIDRLIKKTRLDKIEMGILRGFLSKIIDFEK 243 >gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus maricopensis DSM 21211] Length = 261 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV P+ N+G ARAM N ++LRLV PR S +AR+ + +A ++++ RV+ Sbjct: 4 AVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVYG 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD T+AR R++ P L + + ++FG E GL+++ Sbjct: 64 TLAEALADRDVAVGTSARERSDLPPPRTP----ATLRPMVRAAARPALVFGPEETGLSSD 119 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ L A + P + SLN++QAVLL+ +E ++ + A + E Sbjct: 120 DLQLCQATVRIPT-GEYASLNLAQAVLLVCYEFLQ-----GGDDTVVARKVADRAEYEGM 173 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 +L ++ E GY V + + + + R +L EV L+RG++ +RQ R Sbjct: 174 YAHLYTTMLEVGYTDDV-RGRHTMRLWRAALDRAQLSTPEVRLVRGLLQQARWAARQPDR 232 >gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum marinum IMCC1322] Length = 256 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 8/244 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PV+IL PQ+ ENIG ARAM N L LR+V PRDGWP+ A +A +I++ +VF Sbjct: 12 PVVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVF 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A D+ F+ A TAR R+ P+ L ++ G V ++FG E GL N Sbjct: 72 DTLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQKAKKG-RVALLFGPEASGLDN 130 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----- 189 E+ L++ +S +NP +PSLN++QAVLL+ WE ++ + + + + + Sbjct: 131 NEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWRVAALSDIGDDDRSEPSDDSADDDDA 190 Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E F LE +L++ G+F E + ++ ++ R R+E+ L GI+ L Sbjct: 191 PIKERDYFFQRLENALDDSGFFSSTEMAPAVKRNIRALINRATPSRQEIGTLHGIIQALT 250 Query: 248 KFSR 251 R Sbjct: 251 SKRR 254 >gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM 11300] Length = 254 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 7/246 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV P+ NIG ARAM N + LR+V PR +A + + +A ++ S R+ Sbjct: 2 NLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + L+EA+AD TTAR R + P + ++ ++FG E GL Sbjct: 62 YPTLREALADRDLSVGTTARLRADLPPPRHPAQVRPLVRAASAP----ALVFGPEETGLV 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192 N ++ + P + SLN++QAVLL+ +E ++ ++ K+ + + AT+ E+ Sbjct: 118 NSDLEQCQVTVRVPTA-EYASLNLAQAVLLVCYEFLQAQDETAPKSTRTAERKTATREEM 176 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + +L ++ GY + + L ++ R + E L RG + + Sbjct: 177 EALYGHLHETMALIGYTD-AVRARHTLRLWRAMLDRALMSSAESRLFRGFLRQVRWKVED 235 Query: 253 SSRRNN 258 ++RR Sbjct: 236 AARRGT 241 >gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula palustris E1-9c] Length = 249 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 15/241 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G VAR M NF ++L L+NP +AR+ +++A ++DS RV + Sbjct: 6 IVLVEPLYEGNVGSVARVMKNFGFSRLVLINPC--PLGNEARARASHAQDLLDSARVC-S 62 Query: 77 LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134 L+E A+ ATT ++ + P + I + I+FGRE WGL N Sbjct: 63 LEEVYAESALTIATTGELSKTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNN 122 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+A S+ I + P +P +P LN+S AV L+ +E + A + E+ Sbjct: 123 GEVAASDLICTIPTSPEYPILNLSHAVGLVCYEL--------AHLPRGIYLLADRFEMTC 174 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 D++ L++ P K++ + + + R ++ EV L G++ + + Sbjct: 175 LYDHISSFLDQID--HPPYKREVTMLTIRRLLARTQMTPREVSTLHGLLRRTEWYLNGGQ 232 Query: 255 R 255 + Sbjct: 233 Q 233 >gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter fumaroxidans MPOB] Length = 257 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 6/255 (2%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ + + I+L +P ENIG AR+ N + +L +VNP D + ++ A V Sbjct: 1 MRVNLENIAIVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDV 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++++ ++ +L+ A+A + TTAR + + V P++ A L I I+FG Sbjct: 61 VEAMEIYDDLRNALAPFRHVVGTTARLGSRRQRVRNPRQMADELV-SISRENEAAILFGT 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GLTNE++ + +++ P F S+N++QAV+++ +E + ++ V A Sbjct: 120 ESSGLTNEQLRFCDFLVTIPTA-DFASINLAQAVMIVAYELYTANREEPQRFVP---RLA 175 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + EL D L +L + + + + F R L EV ++RGI +D Sbjct: 176 ARRELEGMYDQLRDTLARINFIN-QDNPDYWMLSVRRFFSRIGLRAGEVKIVRGICRQID 234 Query: 248 KFSRQSSRRNNVLLQ 262 + + + Sbjct: 235 WYCDRKDEDGPASVP 249 >gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 249 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + +LRLV+PR +AR + + ++ + FS Sbjct: 11 TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAMLKQAKQFS 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD H + A+ R + + P++A L E S V ++FGRE GLTNE Sbjct: 71 CLLDAVADCHRVVASCGRLDHGNIPLQTPEQAVPWLLES-MSAAPVALVFGREDRGLTNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLS 194 E+ L+ +++ + +PSLN+S AV +++ E + + + PA+ +L + Sbjct: 130 ELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQRCQGQGTLREGQSAWPDPASPRQLDA 189 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L + L E G+ + + + + + R + EEV LLRG+V L Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQAR-MAKVRGLLQRAAVRPEEVALLRGMVRQLRWA 243 >gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1] Length = 217 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 5/213 (2%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 L+Q+ LV+P+ ++ ++ +D + ++ +L++AI D + ++AR+R Sbjct: 2 MGLSQMVLVDPQCEVDAQAIALAAGASDIAL-GAQIVGSLQDAIEDCGLVVGSSARSRTL 60 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 ++ P+E V ++FGRER GLTNEE+ L + P NP + SLN+ Sbjct: 61 DWPMIEPRECGEKF-AIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNL 119 Query: 158 SQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215 + AV + +E + V+++ +EQ EL F +LE + + + +K Sbjct: 120 AMAVQTLSYEVRVAHLQRVANQFPEQEQAEYPRHKELELFYQHLEKVITDTQFISK-DKP 178 Query: 216 KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +++ L +F R +E+ LRGI+++++K Sbjct: 179 GLVMNKLRRMFSRARPESQEINTLRGILTSIEK 211 >gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium evestigatum Z-7303] Length = 232 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 14/238 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G +AR M NF L +L LVNP +AR+ S++A ++++ +V + Sbjct: 7 IVLVEPLYQGNVGSIARVMKNFGLCELVLVNPCK--LKGEARAMSSHARDILENAKVTNT 64 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134 KEA+ D + TT + + + + P L R+ V I+FGRE G TN Sbjct: 65 FKEAVKDASLVVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGKVAILFGREDNGFTN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ L + I+ P N +P +NIS + ++ +E N + + L Sbjct: 125 DELRLCDMIVHIPANEEYPIMNISHSAAVIFYEL-SNIQSGEKPFADPFDLKLLHNHLNE 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L LE P KK K L +F R +L EV LRG++ + + + Sbjct: 184 LLKQLE---------YPSHKKDKTLLMFRRVFGRAQLTNREVQTLRGVLRIIQRRIKN 232 >gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 250 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 8/236 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +LV+ N+G ARA+ + LRL++P+ D S +A + ++ A +++ Sbjct: 12 VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + T+R+R + + A ++ + V ++FG ER GL NE Sbjct: 72 SLASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDNE 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-----KNVKEQNTPATKG 190 +AL + NP +PSLN++QA+++ + E+ I N +E A Sbjct: 132 HLALCTHRVWLDANPNYPSLNLAQALMICAYTLRESLIRDPGASNSLANREEMADFADPA 191 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + + L++ LE GY P KK++ + ++F R L +EE+ LLRGI + Sbjct: 192 AVAAMLEHWREGLEAIGYLDPA-NPKKLMPRIQALFARSHLHKEEIDLLRGIAKQM 246 >gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 249 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 3/235 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + +LRLV+PR +AR + + +++ + FS Sbjct: 11 TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAMLEQAKQFS 70 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+AD H + A+ R + + P++A L E + + V ++FGRE GLTNE Sbjct: 71 CLLDAVADCHRVVASCGRLDHGNIPLQPPEQAVPWLLESMGA-APVALVFGREDRGLTNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLS 194 E+ L+ +I+ + +PSLN+S AV +++ E + + + PA+ +L + Sbjct: 130 ELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQRCQGQGTLRGGQSAWPDPASPRQLDA 189 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L + L E G+ + + + + + R + EEV LLRG+V L Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQAR-MAKVRGLLQRAAVRPEEVALLRGMVRQLRWA 243 >gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis 3_1_45B] Length = 288 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSAN 63 + A+ IL +P NIG ARA+ LR+V PR+ E+A + + + Sbjct: 2 QSVPELARRVCFILCEPAHPGNIGSAARAIKTMGFRDLRVVAPREADYRTHEEALAYATS 61 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVG 122 + V+++ + ++ L +A+ + + +A T +R + ++AA R+ + + ++ Sbjct: 62 SADVLEASKSYATLAQALEGVTYAWAMTGYDREFGAPLTPMRQAASETASRLSALEGSIA 121 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----- 177 +FG ER GLTNEE+ L + P +P PSLN+SQAV + +E + + Sbjct: 122 FVFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQLALLDARGDAGAL 181 Query: 178 ---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + PA + F D+ E ++ G P K + ++ +F R L + Sbjct: 182 YDWQGRFAHEEPAPLEAVEGFFDHWERAMAACGAHDPK-KPRHFMEVSRRLFGRAGLTKN 240 Query: 235 EVFLLRGIVSTL 246 E+ LLRG+ + + Sbjct: 241 ELDLLRGVCAAV 252 >gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205] Length = 239 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 8/239 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF++ +LRLV PR +AR + + + +++ ++F Sbjct: 4 AVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQLFP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGLT 133 L+ A+AD + AT+ R + P EA L +E ++FGRE GL+ Sbjct: 64 TLEAALADCRRVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGREDRGLS 123 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N E+ + I+ + + S+N+S AV + + E Q P + +L Sbjct: 124 NAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRRC-----PAPTAPQPEPCQREQLE 178 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + L E L E G+ P + + + L ++ R E+ EEV LLRG+V L S++ Sbjct: 179 AALSDAEELLLEVGFLYPHTAQAR-MAKLRALLQRAEIRDEEVALLRGMVRQLRWASQR 236 >gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 246 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 2/237 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P N+G +AR NF + +LRLV+PR + + + + + + + ++SN Sbjct: 12 IILVEPLGEINLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNACIYSN 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D + AT R + + K A L E + IIFGRE GL+N E Sbjct: 72 LLDAVNDCVRVVATCGRIDHGDIPLHTSKNALQWLLE-TNPKDPIAIIFGREDRGLSNSE 130 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + ++ II+ + +PSLN+S AV +++ E + S+ K A+ EL L Sbjct: 131 LQIAQKIITLKTSEKYPSLNLSHAVAIVLHEFKYYNETSNHKKNFITYKTASAKELNDCL 190 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 D ++ L E G+ + + + + R E ++V L+RGI+ + FS++ Sbjct: 191 DDVKKLLLEIGFLYDHTANAR-MSKIKGLLQRAEARSKDVSLIRGILRQIRWFSKKK 246 >gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. CC9311] Length = 243 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 2/238 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR N+N+ LRLV PR +A + + D V+ +F Sbjct: 4 AVVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIFP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+AD + A+ R + + +P+E A + G ++FGRE GL+N+ Sbjct: 64 SLIEAVADCQQVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDRGLSND 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194 E+ +S+ + ++PSLN+S AV +++ E E + + PA+ EL Sbjct: 124 ELLISHRVFKLHTGDVYPSLNLSHAVAVVLHELERERRLRAKPVAPVISEIPASAPELDG 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L E L E G+ + + + + R + +EV LLRG+V L +R+ Sbjct: 184 CLRDAEDLLLEVGFLLEHTASAR-MAKVKGLVQRALIRSDEVALLRGMVRQLRWAARR 240 >gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 248 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 1/242 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + LRLV PR +A+ + + + ++ Sbjct: 6 AVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLACELYP 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L++A+AD + A + R + L P+ A L E +V ++FGRE GL + Sbjct: 66 SLEDAVADCRRVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGREDHGLHSS 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L+ ++ P + + SLN+S AV + + E + V + L + Sbjct: 126 ELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQRLAHVPMDSASDSSPPLPAHAALEAA 185 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + E L E G+ P + + L + +R E EV LLRG+V L SR + Sbjct: 186 MQDAEELLLEVGFLYPHTAAAR-MAKLRQLMLRSEPSEAEVALLRGMVRQLRWASRHGAT 244 Query: 256 RN 257 Sbjct: 245 GE 246 >gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC 7001] Length = 255 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 4/244 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++LV+P N+G VAR NF + QLRLV+PR E+AR + + V+D Sbjct: 3 PPLVVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQAA 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L A+AD H + AT+ R + P+ + L+ Q V ++FGRE GL Sbjct: 63 LHPDLASAVADCHRVVATSGRRDGEPLPLQGPETSLAWLSGGPCD-QTVALVFGREDRGL 121 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKG 190 +N E+ + +++ P + SLN+S AV L + + + +E P +G Sbjct: 122 SNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQRTAHAAEPPEEVLEPCRRG 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL + + E L E G+ P + + + ++ R + EV LLRG+V L S Sbjct: 182 ELEALVADAEALLLEVGFLYPHTADAR-MAKVRALLQRGGISSGEVALLRGMVRQLRWAS 240 Query: 251 RQSS 254 RQ + Sbjct: 241 RQGA 244 >gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus mahii DSM 5219] Length = 231 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 14/241 (5%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 I+LV+P N+G V R+M NF L LVNP +AR+ S +A +++S Sbjct: 3 PQIRIVLVEPLYQGNVGSVTRSMENFGFDDLVLVNPCK--LEGQARAMSCHARDLLESTP 60 Query: 73 VFSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130 L+EAI D + T+ + + P + ++ + +FGRE Sbjct: 61 KVDTLEEAIEDTDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRETNGKIAFLFGREDN 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 G T EE+ + I++ P + +P +NIS A + ++E I + A Sbjct: 121 GFTREELKRCDMIMTIPTSEKYPVMNISHAATIAMYEMSNLPIG--------ERPIAEGF 172 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 +L D+ E L + P K +K L IF R EL EV LRG++ + + Sbjct: 173 DLQLLYDHFEQVLADVK--HPTHKMEKTALMLKRIFGRAELTPREVQTLRGVLRDIQRSK 230 Query: 251 R 251 + Sbjct: 231 K 231 >gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str. Hildenborough] gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1] Length = 254 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 4/248 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70 G +++V + EN+GMVARA N + LV+P + W +KAR + A + +++ Sbjct: 2 LPGLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDP-ERWEIDKARPLATAKGEPLLER 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+V L EA+AD ++ TTAR + +L P++A + + G+ V ++ G E Sbjct: 61 VKVVGTLSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDR 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189 GL N+EI +++ P P SLN++QA L++++EC + S+ ++ T+ Sbjct: 121 GLNNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYECHKASLAHPFRPGPGPESRRITQ 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E L L L + + R + + + + L R E +L G+ + + Sbjct: 181 DENELLLATLRDMLLDIDFLR-HDNPDYFMMPVRRFMGKAGLRRHEFDMLMGVCRQVRRV 239 Query: 250 SRQSSRRN 257 + + RN Sbjct: 240 ATLARDRN 247 >gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora] Length = 255 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++LV P N+G VAR NF + +LRLV P A+ + + +++ Sbjct: 5 SPLVLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRAL 64 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ NL A+AD + A + R + P+EA L G ++FGRE GL Sbjct: 65 IYPNLVSALADCRRVVACSGRINKEVLTTNVPEEALSWLLTTEVDG-PSALVFGREDRGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-------- 184 +N E+ L+ ++ +P + S+N+S AV ++++E + S+ ++ + + Sbjct: 124 SNNELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRNSSNHTSIAKGDLCLQSTMI 183 Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 PAT+ L FL E+ L + G+ P + +M L ++ R ++ EV LLRG+ Sbjct: 184 LEDPATRLALEGFLSDTELLLLKVGFLYPNTARARMK-KLKTLLQRSQITGGEVSLLRGM 242 Query: 243 VSTLDKFSRQSS 254 V L +R+ S Sbjct: 243 VRQLHWANRRHS 254 >gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus proteolyticus MRP] Length = 266 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 10/257 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A ++LV P+ NIG ARAM N + LRLV PR S++AR+ + +A+ +++ Sbjct: 14 ASSLAVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEELLERA 73 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V++ L EA+AD T+AR R + P L R+ + + ++FG E G Sbjct: 74 PVYATLAEALADRDLSIGTSARERADMPRPQHP----AALRGRVRAATSPALVFGPEETG 129 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L N ++ A + P + SLN++QAVLL+ +E ++ E+ + AT+GE Sbjct: 130 LLNADLEQCQATVRIPTA-DYASLNLAQAVLLVTYEFLQG----GEEPAGGERKTATRGE 184 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +L + GY + + L + R ++ E L RG++ + + Sbjct: 185 MEEMYGHLVDVMHLTGYTD-AMRARHTLRLWRLMLDRAQMSSAESRLFRGLLRQVQWKVK 243 Query: 252 QSSRRNNVLLQKTEKSE 268 ++ + + + + E Sbjct: 244 EAGVQASAPESQKQDPE 260 >gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE] gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE] Length = 235 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 14/245 (5%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L++P N+G V R+M NF + LV P A++ +++A ++ + R+ Sbjct: 3 SIRVVLIEPLYEGNVGSVCRSMKNFGFADIVLVKPC--RLDNFAKAMASHAQDLLATARI 60 Query: 74 FSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 EA+ + ATT + + V P L + +IFGRE G Sbjct: 61 VDTFDEALEGADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NE + + + P + +P +N++QAV + ++E A + + Sbjct: 121 LPNEIVERCDIVAYIPTSKDYPIMNLAQAVSIFLYEL--------SGFKGGNVALADRED 172 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + + L++ Y P KK K + L I+ R L R E + + G++ + Sbjct: 173 VDRLYENYSNLLDDINY--PEHKKDKTMMMLRRIYGRAMLNRREYYTMMGVLHEIGLALE 230 Query: 252 QSSRR 256 ++ +R Sbjct: 231 RAKKR 235 >gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 252 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 10/248 (4%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV P+ N+G ARAM N + LR+V PR + +A + + +A ++ S RV Sbjct: 2 NLAVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F L+EA+ D T+AR R + + P ++ + ++FG E GL Sbjct: 62 FPTLREALGDRDLSVGTSARLRADLPAPRHPALIRPMVRQAAAP----ALVFGPEETGLI 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N ++ + P + SLN+SQAVLL+ +E ++ ++ + AT+ E+ Sbjct: 118 NSDLEQCQVTVRIPT-GNYASLNLSQAVLLVCYEFLQG----QDEPIPVTRKTATREEME 172 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + +L +++ GY + + L ++ R L E L RG + + + Sbjct: 173 AMYSHLHETMQLIGYTD-AVRARHTLRLWRAMLDRGLLSSAESRLFRGFLRQVRWKVEDA 231 Query: 254 SRRNNVLL 261 + R Sbjct: 232 AARGTTSA 239 >gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3] Length = 238 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 +++VD + N+G +ARAM NF + L+LV+P + +A + A V+ V Sbjct: 2 ISVVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDGEAYGFAGQAREDVLPDAEV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132 E I H + T N + K V P L + S + +V ++FGRER GL Sbjct: 62 V-TFDEVIEGFHTVGFTATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NEE+A + I + P + +P LN+ QA + ++E + ++ S+ ++ A + E+ Sbjct: 121 MNEELARLDQICAIPASADYPVLNLGQAATVALYELRDLAMNESQLP-DVEHERAAEPEI 179 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F D + +L+ GY P K+ K + + + R E+ L G++ +++ +R+ Sbjct: 180 ERFYDRFDETLQAVGY--PDRKRPKTMRLVRRLVGRSHPTDREITTLHGVLRAVERATRE 237 Query: 253 S 253 Sbjct: 238 R 238 >gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 267 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 11/258 (4%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 PQ ++ I+LV+P N+G +AR M NF L+ +V PR +AR + + Sbjct: 15 SVPQPRSPMS-LRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVH 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A +++ + NL A+ ++ ATT + + +P + L + + Sbjct: 74 AAALLEQAVLVDNLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAAL 128 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 IFGRE GL E++L+ ++FP +P +PSLN++QAV L + S S +++ Sbjct: 129 IFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQE 188 Query: 184 NTPATK----GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 ++PA +L + LE L GY + ++ + +I R L EEV LL Sbjct: 189 SSPAAVRAAFEQLHGYTSDLEALLLRVGYLHSHTAASR-MEKIRAIAQRSALTAEEVALL 247 Query: 240 RGIVSTLDKFSRQSSRRN 257 RG+V L+ Q + Sbjct: 248 RGMVRQLNWALNQVPSSD 265 >gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix DSM 17093] Length = 248 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 11/243 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P+ N+G ARAM NF L L LV P+ +A + +++A V+ Sbjct: 15 RIVLVRPKDPANVGAAARAMKNFGLGDLHLVAPQRPI-GRRAYALASHAQDVLQRAVEHE 73 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ EA+ + TTAR R + + P+EAA L + + + ++FG E +GL+N+ Sbjct: 74 SVAEALKGCTLVLGTTARERREGR-MYTPREAAQTL-----TPEGLAVLFGPEDFGLSND 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ I P + SLN++QAV L+ +E S + E+ A + L Sbjct: 128 DLKHCQGYIRIPTA-AYASLNLAQAVQLVAYEWFVTSQEQPPPSPPEER--AARELLEGM 184 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 D+L +L GY +++ +IF R +L EV LRG+ + + S Sbjct: 185 YDHLLKTLHLIGYTD-AQRQGSAERLFRAIFDRADLSAREVAALRGLWRQVAWAVTRGSA 243 Query: 256 RNN 258 R Sbjct: 244 REQ 246 >gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 241 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 2/238 (0%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P N+G VAR NF + QLRLV PR +AR + + + +++ +++ Sbjct: 4 AVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQLYP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L AIAD + AT+ R + P A L + ++FGRE GL+N Sbjct: 64 DLAAAIADCQRVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGREDRGLSNA 123 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ + ++ + + SLN+S AV + + E + + +G L + Sbjct: 124 ELLQAGRLVRLATSEAYASLNLSHAVAICLHELQACRTTERTEPA-DLGNLCERGALEAT 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 L E L E G+ P + + L ++ R ++ EV LLRG+V L +RQ Sbjct: 183 LADAEALLLEVGFLYPHTAAAR-MAKLRALLQRAQVQEPEVALLRGMVRQLRWAARQG 239 >gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon] Length = 234 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 14/236 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV+P+ EN+G VAR NF + L +VNP + KA S +A+A V+ S ++ Sbjct: 3 VRIILVEPKSEENVGAVARVTKNFGFSDLYIVNPPEI--GIKALSVAAHAYDVLQSCKIV 60 Query: 75 SNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132 +L AIA+ + TTA+ + K + P + L +++ + + I+FGRE GL Sbjct: 61 DSLPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 N+E+ L + ++S P +P +P +N+S AV ++++E + A + Sbjct: 121 LNDELKLCDLVVSIPTSPEYPVMNLSHAVAVILYEL--------SDTISGTLELAPVEDR 172 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+ L+E GY KK K L L I R EL +E+ L+GI+ + Sbjct: 173 ERLYMQLKTFLDEIGY--REHKKAKTLLMLRRILGRAELTTKELQTLQGIIGKAEW 226 >gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 257 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 8/253 (3%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67 Q++ + II+V + ENIGM ARA N +L LV+P W EKAR + A + + Sbjct: 7 QDALRHLEIIMVGTKFPENIGMAARACANTGCGRLTLVSP-AWWDKEKARPLATAKGEPL 65 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D++ V L +A+A + TTAR + +L P++AA + + G V I+FG Sbjct: 66 LDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHEGSRVAIVFGC 125 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKE 182 E GL+N +I +++ P SLN++QA+L++ +ECM+ + + Sbjct: 126 EDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSRVDPQPSLGNDPGQ 185 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 Q+ T E L+ +L Y + + L L + L R E+ +L GI Sbjct: 186 QSRRITHEEQALLYARLKETLLAIDYLKS-DNPDYFLMPLRRFLGKSGLRRHEMDMLMGI 244 Query: 243 VSTLDKFSRQSSR 255 +D +++ + Sbjct: 245 CRQVDNLRKEAGK 257 >gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC 7942] Length = 245 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 10/246 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV+P N+G +AR M NF L+ +V PR +AR + +A +++ + Sbjct: 4 RIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVD 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ ++ ATT + + +P + L + +IFGRE GL Sbjct: 64 NLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAALIFGREDSGLQRS 118 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GE 191 E++L+ ++FP +P +PSLN++QAV L + S S +++++PA + Sbjct: 119 ELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQ 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L + LE L GY + ++ + +I R L EEV LLRG+V L+ Sbjct: 179 LHGYTSDLEALLLRVGYLHSHTAASR-MEKIRAIAQRSALTAEEVALLRGMVRQLNWALN 237 Query: 252 QSSRRN 257 Q + Sbjct: 238 QVPSSD 243 >gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] Length = 252 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 2/244 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +IL P+ EN+G VARA N ++L + + P A +++ ++ S Sbjct: 1 MNNIAVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRST 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + NL++A+ H ++AT+AR K V P +AA + Q+ ++FG E G Sbjct: 61 EHYPNLEQALKGFHRVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKG 190 L N EI L IIS P SLN+SQAVLL+++EC ++ + +++ ++P T+ Sbjct: 121 LANHEIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKHVPAARTRHIPSWDSPPVTQE 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ ++ +L + +P + + L + + + E LL GI + + Sbjct: 181 QMQLLHQNIQETLLLIDFLQP-DNPDYFMLPLKRFLAKTGIRQHEFNLLMGICRQIKWMA 239 Query: 251 RQSS 254 + Sbjct: 240 GRLP 243 >gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena turkmenica DSM 5511] Length = 255 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A + + P + +VD Q N+G +ARAM NF L LV+P + P +A + Sbjct: 5 PSATEPPSDRTPPAVAVVDAQFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAYGFAG 64 Query: 63 NAD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-N 120 +A V+ + + + + H I T N ++ V P L ER+ + + Sbjct: 65 HAREDVLPNATEI-SFDRLVTEYHTIGCTAVTNEDDRSHVRFPFSTPADLAERLPTVEAP 123 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FGRER GLTNEE+A + I S P + +P LN+ QA + ++E ++ E + Sbjct: 124 TALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELRSLTLADDETQL 183 Query: 181 KE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + + A + + D L E P EK+ K + L +F R +L E L Sbjct: 184 PDVERVRAPEPTVDRLYDQWADLLAEIN--HPEEKRDKTMRMLRRVFGRADLTEREANTL 241 Query: 240 RGIVST 245 GI+ Sbjct: 242 LGILRR 247 >gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 250 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 2/247 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L P+ EN+G ARA N +++L LV+P P +++ ++D++ Sbjct: 2 LDNLTIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGLLLDTL 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L A+A +Y TTAR K + P EAA + + +G V ++FG E G Sbjct: 62 EIVPTLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDAG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190 L+N+E L +++ P SLN++QAVL++ +E + + + + + AT Sbjct: 122 LSNQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFKAASGLAGDVAGQTPSRAATHA 181 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E S L +L + + + + R L R+E LL G+ + Sbjct: 182 ERESLFAALRETLLAIDFL-KADNPDYWMLPVRRFIDRVGLRRQEFNLLMGVCRQVKWAV 240 Query: 251 RQSSRRN 257 Q +++ Sbjct: 241 GQGGKKS 247 >gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] Length = 256 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 2/247 (0%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 N ++L P+ EN+G ARA N L+LV P A ++ V+ Sbjct: 5 PNLLDNLTVVLFQPKFAENVGSTARACANLGCPNLKLVQPPAWDLERAAPLATGRGKEVL 64 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S+ + +L A++ H +Y TTAR K++ P++ A + ++ +G V ++FG E Sbjct: 65 HSLTLHPDLPSALSPHHTVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPE 124 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA 187 GL+NEEI + +++ P SLN+SQAVLL+++E + S + Q+ Sbjct: 125 DRGLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYEWFKASSGKRFLRTTPPQSRLC 184 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 T E + L ++ +L +F+ ML + F R EL R E LL GI + Sbjct: 185 THEERETLLTSVQEALLRLDFFKDDNAAYWMLP-VRRFFQRFELRRHEFNLLMGICRQVK 243 Query: 248 KFSRQSS 254 + ++ Sbjct: 244 WLATRTD 250 >gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739] gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739] Length = 246 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 117/236 (49%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ N+G +AR M NF +T L LVNP+ ++ AR+ + +A ++++ ++ + Sbjct: 5 VILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKIHES 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ + T+ ++ AP +G++FGRE GL NEE Sbjct: 65 LEEALNTVDLAIGTSGLAGGDYIPERAPISPEEFAKRLSIYDGEIGLVFGRESRGLDNEE 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + ++ P + +P +N+S AV ++++E + + ++ VK + +T+ E + Sbjct: 125 LKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLKNNPTEVKRRLRKSTRQEREMLV 184 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 ++ L+ Y + +EK++ + R + +EV L G + K + Sbjct: 185 EFWAKFLDTLEYPKDLEKRRFYVLMFKRFLGRGFIYAKEVHSLYGPLRRAIKLLER 240 >gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 264 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 6/242 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFS 75 IILV P+ ENIG AR NF + +L +V+ + + E+ + + A +I +RV Sbjct: 16 IILVGPKFPENIGASARIASNFGIAELIVVS-EEDFDQERMLKMATHKAAHLIHGMRVCR 74 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 EA A HFI TTAR + P+E + + G VG++FG E GL+NE Sbjct: 75 TTAEAAAPFHFIVGTTARQGRHRPQDQTPREVMAEIVPLLA-GNRVGLMFGPEDSGLSNE 133 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ L + P F SLN++QAV + +E ++ + + A +L Sbjct: 134 DLDLCQFASTIPTAG-FSSLNLAQAVAIHCYELY-TAVHTHPFAAIPTSEFANSFDLEGM 191 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 +++E +L E + + + ++ R L ++E ++RGI L RQ + Sbjct: 192 YEHIEQALNEITFLH-DTNRVYWMRNIRQFLSRLRLKKKEASMIRGICRKLMWHHRQPPQ 250 Query: 256 RN 257 + Sbjct: 251 TD 252 >gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I] gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic archaeon RC-I] Length = 249 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 20/251 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV+P N+G V RAM NF L LV P + A++ +++A ++ S + Sbjct: 8 HVRVVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCE--LGNSAKAMASHAQDLLASAAI 65 Query: 74 FSNLKEAIADLHFIYATTARNRNNFK-----SVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++EA+ + I TT + ++ + +P+E +L ++ V ++FG+E Sbjct: 66 VDTVEEALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDK---QGTVALLFGKE 122 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL NE + ++S P + +P +N+S AV ++++E + A Sbjct: 123 NHGLPNEILEKCGVVLSIPTSDDYPVMNLSHAVAVVLYELADIKGNDF--------LLAD 174 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++E L+ Y KK K + I R + E F L G++ + Sbjct: 175 SEMQEILYQHVEQLLDSINYAD--YKKDKTSLMIRRIIGRAMISPREYFTLMGLIRDIQL 232 Query: 249 FSRQSSRRNNV 259 ++ + Sbjct: 233 ALARAEAGQDT 243 >gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109] Length = 248 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 7/244 (2%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V Sbjct: 4 VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131 +L AI D I + R + + P++A L SG V ++FGRE G Sbjct: 64 DLLTAINDCRRIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGREDRG 123 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189 L+N E+ L ++ +PSLN+S AV +++ E + V++E PA Sbjct: 124 LSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSVTTETRCIEPPSPDPAAA 183 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 L + LD L E G+ + + + + R + EEV LLRG+V L Sbjct: 184 KALSACLDDATDLLLEAGFLLDHTASAR-MAKVRDLLQRATVRTEEVALLRGMVRQLRWA 242 Query: 250 SRQS 253 R Sbjct: 243 IRAK 246 >gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC 43099] Length = 263 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 7/250 (2%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-D 65 L + P + +VD Q N+G ++RAM NF + L L++P + P +A + +A D Sbjct: 16 DLPSRRTPPAVAVVDAQFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHARD 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGII 124 V+ + + E ++D H I T N N+ + P L ER+ + + ++ Sbjct: 76 DVLPNATEI-SFDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTALV 134 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-Q 183 FGRER GLTNEE+A + I + P + +P LN+ QA + ++E ++ E + + + Sbjct: 135 FGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRSLALDKDETQLPDLE 194 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A + + D LEE P EK++K + L ++ R +L E G++ Sbjct: 195 RVRADEATVDRLYDQWADLLEEIN--HPPEKREKTMRMLRRVYGRADLTEREANTFLGLL 252 Query: 244 -STLDKFSRQ 252 ++ + Q Sbjct: 253 RRATERPAEQ 262 >gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z] gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum labreanum Z] Length = 248 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 15/250 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+P NIG AR M NF + LVNP AR S++A V+++ Sbjct: 1 MPQIDIVLVEPLYEGNIGFAARVMKNFGFHNMVLVNPPKLTMECTAR--SSHAKDVLENA 58 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 +L+E A ATT +++ + P + L E I + I+FGRE Sbjct: 59 ERI-SLEEVFARSDLCIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGRISILFGREN 117 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 WGL NEEIA + + + P + +P +NIS A+ ++ +E + + A K Sbjct: 118 WGLNNEEIAKCDIVCTIPTSDEYPIMNISHAIGIVCYELAHLQ--------RGEYLLANK 169 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ + ++E LE P+EK++ + + R L E L GI+ + Sbjct: 170 TEMNALYAHIERFLEGIQ--HPIEKRETTVLLARRVLGRTRLTVREASTLHGIMRRTEWH 227 Query: 250 SRQSSRRNNV 259 + + + Sbjct: 228 LKHPGQAYDA 237 >gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus profundus DSM 14977] gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus profundus DSM 14977] Length = 240 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 7/245 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ N+G ARAM NF L +L LVNP R ++ A V++ R Sbjct: 2 IRVVLVEPREPRNVGAAARAMKNFGLEELVLVNPERPLDEAAYRLATRGAADVLEQARTV 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + L EA+A ++ AT+AR R + V P+E A + G V ++FGRE +GL+ Sbjct: 62 ATLDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEG-PVALLFGRENFGLS 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEE+ ++A+ P + SLN++QAVLL+ +E + +E + PA EL Sbjct: 121 NEEMDRAHAVWRIPT-GGYASLNLAQAVLLVAYEVF---LARAELTETARPRPAAAEELE 176 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 F LE L E Y + + + + R L EV LRG++ Sbjct: 177 RFFADLEAYLIEIRYTD-EHRLEGAMRAFRRMAHRALLSSNEVQRLRGLLRQSRWAIAHG 235 Query: 254 SRRNN 258 R + Sbjct: 236 GERVD 240 >gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 126/237 (53%), Gaps = 2/237 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++ +V+ + Sbjct: 9 VILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKAKVYED 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A++D I AT R + + + K+A + + + + ++FGRE GL+NEE Sbjct: 69 LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWVLKSERE-ETIALVFGREDRGLSNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + +N +IS + +PSLN+S AV +++ + + + + K + ++PA +L + Sbjct: 128 LLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKKHTKTSSPANLIKLEDCI 187 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + L + G+ K K + + + +R E+ +EV L+RGI+S + Sbjct: 188 NDAGSLLLDIGFLMKHTYKAK-MTKIKQLLLRGEIKDDEVALIRGIISQARWKIKNK 243 >gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 160 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 2/161 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 LTN+E+ + ++ NP + SLN++ AV ++ +E Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW 160 >gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 7/244 (2%) Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L +S K V +LV+P+ NIG ARA+ N T L L+NP ++A + + Sbjct: 2 PTLNHSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLINP--VPLQDEAYWMAWAS 59 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V++ ++F L E++ D I TT R +++ K+ + E + V I+ Sbjct: 60 KDVLEKAQIFRELDESLKDKALIIGTTRRRGAKRGAIIDVKDGVKRVYE-VAQNNKVAIL 118 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GL NEE+ +I+ P + L PSLN++QAVL++ +E M + ++ Sbjct: 119 FGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELMRCEELKDFHMNRQF- 177 Query: 185 TPATKGELLSFLDYLEISLEERGYF-RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 ++ EL + L L++ Y + +K+++++ F R L E+ LL G+ Sbjct: 178 -YVSQTELDKLYERLFKLLKKIDYIPDNPDIEKRIINNFRHFFGRTGLTFWELKLLHGLC 236 Query: 244 STLD 247 + ++ Sbjct: 237 THIE 240 >gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 126/238 (52%), Gaps = 2/238 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF++ +LRLV+P+ + +++A+ + +++ +V+ + Sbjct: 9 VILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKAKVYED 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A++D I AT R + + + K+ A+ + + ++FGRE GL+NEE Sbjct: 69 LNSALSDCSRIIATCGRKEHGEIPLNSNKD-ALSWGLKSEREDTIALVFGREDRGLSNEE 127 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + +N +IS + +PSLN+S AV +++ + + + + K + ++PA +L + Sbjct: 128 LLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKRHTKISSPANLIKLEDCI 187 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + L + G+ K K + + + +R E+ +EV L+RGI+S + S Sbjct: 188 NDAGSLLLDIGFLMKHTYKAK-MTKIKQLLLRGEIKDDEVALIRGIISQARWKIKNKS 244 >gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] Length = 250 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 2/239 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + ++++ ++F + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKILENCKIFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D + A+ R N S E N+ IIFGRE GLTN E Sbjct: 72 LQKAIFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFGREDRGLTNSE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+N S P + PSLN+S AV ++++E ++S + +K N ++K +FL Sbjct: 132 LLLANKTFSIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVHDTFL 191 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 D +E L GY K K+ + +R E+ +LRGIV ++ F S + Sbjct: 192 D-IEEMLLRVGYLLKHTSKAKI-SKFKNFILRANTSMHEINVLRGIVHQINWFLNNSKK 248 >gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca acetoxidans DSM 11109] Length = 276 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 7/243 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + +IL P+ ENIG ARA N L++L +V P + ++ +A +I ++ Sbjct: 21 LENLAVILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQERMLKMATGSAAELIHNL 80 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+ +L A+ HFI TTAR N + S + P++ A L + + ++FG E W Sbjct: 81 VVYHDLGTALGPFHFIVGTTARIGGNVRQSPVTPRDIAQQLIP-LSYHNRIALLFGPENW 139 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTNEE+A +A+++ P F SLN++QAVLL+ +E ++ A Sbjct: 140 GLTNEELAFCHALVTIPTA-AFRSLNLAQAVLLVAYEIFLARQDQRDRFTP---RLANSW 195 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 EL + L+ +L + Y + + + L F R L EV ++RGI +D + Sbjct: 196 ELEAMYADLQDTLIKINYIG-HQNPQHWMMRLRRFFSRHGLRAVEVQVIRGICRQIDWYV 254 Query: 251 RQS 253 R+ Sbjct: 255 RRR 257 >gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 10/248 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADC 66 + + G I+LV + ENIGM ARA N + L LV+P + W EKAR + Sbjct: 1 MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDP-ERWDKEKARPLATPKGQD 59 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++D V+V+++L EA+A + + TTAR +S+L+P AA + E + G+ V ++FG Sbjct: 60 LLDDVKVYADLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQN 184 E GL NEEI + +++ P +P SLN++QAVLL+++EC + K+ E+ Sbjct: 120 PEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNRPGKDAGNAEKK 179 Query: 185 TP-----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 P T E ++ L+ L Y ++ +F R L R E L Sbjct: 180 HPGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPW-RRLFSRAGLRRHEYDAL 238 Query: 240 RGIVSTLD 247 G+ + Sbjct: 239 MGLCRQVR 246 >gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 2/239 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S KA+ + +D ++F N Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDN 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ AI D + A+ R + SV E + N+ IIFGRE GL+N E Sbjct: 72 LENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLSNNE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+N + P + PSLN+S AV ++++E ++S + K ++ N A+ ++ Sbjct: 132 LLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFN-LASSKQIHDSF 190 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 +E L GY K K+ + R E+ +LRGIV ++ F S R Sbjct: 191 VEIEEMLLGVGYLLEHTSKAKI-SKFKNYLSRANTTMHEINVLRGIVHQINWFLNNSKR 248 >gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 [Nitrococcus mobilis Nb-231] Length = 243 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 7/242 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+L+ NIG ARAM L++L LV P +P +A++++ +A V+ + Sbjct: 2 NPDNIRIVLLGTTHPGNIGSAARAMKTMGLSRLHLVAPL-YYPDPRAQATAGHAADVLGA 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V ++L A+ D + TAR R L + A+ + E V ++FGRE Sbjct: 61 AHVHADLAAALHDTRLVLGLTARPRRLAAEALDARCGALQIAE-ASRAYPVALLFGREDS 119 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTP 186 GLTN +++ + ++ P NP +P LN++ AV ++ +E E + P Sbjct: 120 GLTNAQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYELFLAGRCLEGERGEPSGSSAAPP 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A EL F +L+ ++ GY R ++ L +F R R E+ LLRGI++ + Sbjct: 180 APMEELEGFYCHLQRIMQASGYSR-HRPDALLMRRLRRLFNRARPERAELNLLRGILTAI 238 Query: 247 DK 248 ++ Sbjct: 239 ER 240 >gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica ATCC 23970] Length = 238 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 21/238 (8%) Query: 35 MWNFNLTQLRLVNP-------------------RDGWPSEKARSSSANADCVIDSVRVFS 75 M L +L +V P + E++ ++ A V+ + + + Sbjct: 1 MKTMGLHRLTIVAPNLMATPMTENPPVFDPEYPQSFKLPEESFILASGAADVLHNAEIVA 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+AD A T+R R + P++ L + G+ V ++FG E +GL+ E Sbjct: 61 TLDEALADTAIACALTSRRREITAPLQTPRDLVPELLQAAQRGEQVALVFGNETFGLSIE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ N +++ NP + SLN++QAV ++ +E + S ++++++ AT ++ Sbjct: 121 EVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGM 179 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + ++E +++ G+F ++++ + S+F R E++ +LRG +TL + + Sbjct: 180 VAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 236 >gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] Length = 262 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 12/252 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G ++LV+P N+G VAR NF L LRLV PR E+AR + + +++ + Sbjct: 10 PGLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERAQ 69 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV------GIIFG 126 ++ +L AIAD + A + R + + P EA L E ++FG Sbjct: 70 LYPDLAAAIADRTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAPALVFG 129 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---- 182 RE GL+ +E+ + I+ + + SLN+S AV + + E +E+ Sbjct: 130 REDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRRCQQGGTERRPSGPAPV 189 Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 + PA++ L + L E L E G+ P + + L ++ R ++ EEV L+RG Sbjct: 190 IRPEPASRELLEAALADAEELLLEVGFLLPHTAHAR-MAKLRALLQRAQISAEEVALVRG 248 Query: 242 IVSTLDKFSRQS 253 +V L S++ Sbjct: 249 MVRQLRWASQRG 260 >gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1] Length = 250 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 7/251 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70 I+L P+ EN+G ARA N + +L LV+P + E+AR + + V+D Sbjct: 2 LNNLTIVLFRPKFSENVGAAARACANMGVGRLVLVDPP-AFDMERARPMATSKGGLVLDR 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + L EA+A +Y TTAR KSVL P +AA + + G V ++FG E Sbjct: 61 LEICGTLAEAVAGAETVYGTTARLGGWRKSVLTPGQAAGGAVKTLQGGGGVAVVFGPEDA 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATK 189 GL+N+E L + +++ P SLN++QAVL++ +E + S + E + + AT Sbjct: 121 GLSNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYEIFKASKGLEEEVDQPSPSRAATH 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E S L SL + + + + R L R E LL G+ + Sbjct: 181 AERESLFAALRESLLAIDFL-KADNPDYWMLPVRRFIDRVGLKRHEFNLLMGVCRQIKWA 239 Query: 250 ---SRQSSRRN 257 R R + Sbjct: 240 LGTGRDKPRAD 250 >gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8] gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei 6A8] Length = 261 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV P N+G AR M NF T+L LV+P E+A+ +++A V+ + Sbjct: 1 MPEIDIVLVAPLYEGNVGFAARVMKNFGFTRLVLVDPC--PLGEEAKGRASHAQDVLGNA 58 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRER 129 + +++ A + ATT + +++ + P + L ERI + V I+FGRE Sbjct: 59 EIC-TIEDVFARSSIVVATTGQVSKSVCNPMRMPFYSPRELRERIGIAEGRVSILFGREN 117 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 WGL N+E+ S+ I + P + +P +N+S AV ++ +E AT Sbjct: 118 WGLNNDEVKRSDMICTIPTSDEYPIMNLSHAVGIVCYELANLPSAP--------YRLATP 169 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ +++ L+ P K++ + + I R L E + G++ + Sbjct: 170 YEMGHLYRHIDRFLDSV--HHPAFKRENTMIMIRRILGRACLTSREASTVHGLLRRTEWH 227 >gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT] gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta thermophila PT] Length = 243 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 17/239 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P+ N+G VAR+M NF L LV P D A +A+A ++ S + Sbjct: 4 RVVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCDIGSFGMA--MAAHAKDILQSAKSVD 61 Query: 76 NLKEAIADLHFIYATTAR--NRNNFK---SVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 L++A+ ++ I TT + +R++ + P L ER+ V ++ GRE Sbjct: 62 RLEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDKDGTVALLLGRED 121 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 WGLTN+E+ + ++S P + +P +N+S A ++++E + + + A + Sbjct: 122 WGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYEL-------GQVDSTLEIRLAGR 174 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + + L Y P K + ++ L IF R EL E L G++ Sbjct: 175 DMLERIYESTDHLLRIINY--PEHKIRYVVLMLRRIFGRAELTEREANTLLGVIKKAIW 231 >gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei JF-1] Length = 251 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 16/260 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+P N+G AR M NF T L L+NP +A+ +++AD V++ Sbjct: 1 MPHIRIVLVEPLYEGNVGFAARVMKNFGFTDLILINPCTI--GNEAKIRASHADDVLEHA 58 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 V L E H + ATT + + P + + + I + I+FGRE Sbjct: 59 TVM-TLDEVFRTSHRVIATTGSLSYSACHPTRMPFYSPKEIRDLIRDLDGTISILFGREN 117 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 WGL+NEE+ ++ I + P +PL+P +N+S AV ++ +E K AT Sbjct: 118 WGLSNEEVRRADIICTIPTSPLYPIINLSHAVGVICYELANL--------PKGVIPLATV 169 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK- 248 E+ ++++ L+ P K++ + + + R L E + G++ + Sbjct: 170 DEMNHLYEHIDQYLDLVD--HPGFKRESTMTLIRRVLGRCNLTWRECSTIHGLLRRSEWH 227 Query: 249 FSRQSSRRNNVLLQKTEKSE 268 F+ ++ +T+ Sbjct: 228 FAPPQGEESSSHPDRTDPDH 247 >gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] Length = 184 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 10/189 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV + EA+ D + T+AR R+ +++ P+E A + + + I+FGRER G Sbjct: 60 RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFL 196 T +L F Sbjct: 176 TTDQLAYFF 184 >gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 155 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 1/155 (0%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV NIG ARAM N L++L LV+PR +PS A + ++ A +++ Sbjct: 2 LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + L+EA+ + T+AR+R+ +L P+ + + E+ G V ++FGRE G Sbjct: 61 QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 LTNEE+ + + P +P F SLN++ AV ++ + Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155 >gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 250 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 2/239 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +VF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCKVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D + A+ R S+ E N+ IIFGRE GLTN E Sbjct: 72 LQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNSE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+N + P + PSLN+S AV ++++E ++S + +K N A+ E+ Sbjct: 132 LLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFN-LASSKEVHDTF 190 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 +E L GY K K+ + +R + E+ +LRGIV ++ F S + Sbjct: 191 VEIEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSKHELNVLRGIVHQINWFLNNSKK 248 >gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis DSM 12940] Length = 237 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 7/237 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVR 72 + +VD Q N+G +ARAM NF L+ L+LV+P + P +A + A D ++ S Sbjct: 2 NVSVAVVDAQTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSAD 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131 V +E + + H + T N + K V P L E + +V ++FGRE G Sbjct: 62 VV-TFEEIVNNYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGREDVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NEE+A + I S P + +P LN+ QA ++++E ++ E + E A + Sbjct: 121 LSNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELR--ALTVEETQLPEITDRADQPA 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + D LE P EK+ K + R EV LRG+ +++ Sbjct: 179 IEGLHDQFGSFLEVID--HPEEKRAKAGRLFRRVIGRAHPTGREVRTLRGLFRRVEQ 233 >gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 228 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V + AR + + ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVYQEPAARWVAHGSGDILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LADALADVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V S E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMDVKS-----EAVQPAVAGQLSALH 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 D L+ L VE +K+ D L+ R L + + +L ++ ++K Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEK 224 >gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae R3021] gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.4-21] Length = 205 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 10/189 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+L++ NIG ARAM LTQL LV+P+ E++ + SA A+ ++ + Sbjct: 2 LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSI--DEQSYALSAGAEDIVKNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ +A+ + + T+AR R+ +++ P+E A + I + I+FGRER G Sbjct: 60 MIVNSFDDAVKNCSLVIGTSARLRHLQNTLIEPRECADKV---IAHKGKIAIVFGRERIG 116 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187 LTNEE+ + ++ P NP + SLN++ AV L+ +E +V + K ++ E+N P Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175 Query: 188 TKGELLSFL 196 T +L FL Sbjct: 176 TADQLAYFL 184 >gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917] Length = 254 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 13/255 (5%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP+L ++LV+P N+G VAR N+ +T LRLV PR +AR + Sbjct: 6 APGAPRL-------CVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMA 58 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFS 117 + V+DS + +L A+ + AT R + + P++ L S Sbjct: 59 VHGQAVLDSATHYPDLISALHGCRRVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEAS 118 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++FGRE GL+N+E+ LS +I+ +P +PSLN+S AV +++ E Sbjct: 119 QAAAALVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQPVA 178 Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + + PA +L L+ L E G+ + + + + R + +EV Sbjct: 179 APALDLD-PAAPQQLEDCLEAARSLLLETGFLLEHTAHAR-MAKVRGLLQRALIRSDEVA 236 Query: 238 LLRGIVSTLDKFSRQ 252 +LRG+V L RQ Sbjct: 237 MLRGMVRQLRWALRQ 251 >gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3] Length = 243 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 7/246 (2%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L P ++LV+P+ NIGMVAR M NF ++L LVNP SE++ S + +A Sbjct: 4 SLNPFVMMPSVVLVEPEGPANIGMVARTMKNFGFSRLVLVNPN---LSEESYSYAVHARD 60 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V+ + + +EA+ TT + F S AP + VG+ FG Sbjct: 61 VLKNATIVETFEEALELFDLTVGTTGKPGRRFISYRAPLYPWELRETLKGYTGEVGLFFG 120 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 RE GL NEE+ + I++ P + +P +N++QAV ++++E + + + E P Sbjct: 121 RESIGLKNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSK----TRPEPSVEALKP 176 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 AT+ E + + L+ Y + E+++ + + L EV L G + Sbjct: 177 ATRDEKEALVRVWAELLKVLEYPKDEERREVFVKVFRKAVGKAFLYGREVHTLIGPLRRA 236 Query: 247 DKFSRQ 252 K + Sbjct: 237 VKRLEE 242 >gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163] gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium wasabiae WPP163] Length = 228 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TAHQEPAARWVAHGSGDILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F+ P E +L E+I + ++FGRE GLTNEE Sbjct: 64 LADALADVDFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ + + PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVFCYQL-----AGLMQVKPDAVQPAVAGQLSALH 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D L+ L VE +K+ D L+ R L + + +L ++ ++K + Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228 >gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP] Length = 245 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 4/245 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ NIG VARAM NF++ +L LVNP + +A + +A V+++ ++ Sbjct: 3 VAVILVEPEYQMNIGFVARAMKNFDVKELILVNPPE--LRGEAYKFAMHAKDVLENAKIV 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+ + TT + + P G +GI FGRE GL+N Sbjct: 61 KTVDEALKIVDVAVGTTGISGKVYLPERTPISPEEFAKRAFLYGGKIGIFFGRESKGLSN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193 EE+ + ++ P + +P +N+S AV ++++E + + + + ++ AT+ E Sbjct: 121 EELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVKAEISTEENRHLRKATREEKD 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-TLDKFSRQ 252 + Y LE Y + ++K L + R + E++ L G + ++K R Sbjct: 181 ILVKYWSELLETLNYPKDPIRRKYFTIMLRRVIGRSFIYAREIYSLYGPLRLAIEKIKRY 240 Query: 253 SSRRN 257 + ++ Sbjct: 241 ENDKH 245 >gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus DX253] Length = 249 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 9/254 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 P + +V+P+ NIG +ARAM NF + L+LVNP + +A + A V+ + Sbjct: 3 PAVAIVEPKTPGNIGTIARAMKNFGMDDLKLVNPPEFGRDSEAYGFAGQAREDVLPNYDE 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGL 132 E I + H + T N + V P + L E + + +IFGRE GL Sbjct: 63 V-TFDELIENYHTVGMTATTNEDASHHVRFPFKTPRELAESLQDVTTDTVLIFGREANGL 121 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TNEE++ + + S P + +P+LN+ QA + ++E ++ ++ A + E+ Sbjct: 122 TNEELSRIDEVCSIPASASYPALNLGQAATVTLYELRTLTVEETQLP-DVSRERADEAEI 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 F LE G +P EK +K + + +F R E+ LRGIV + +++ Sbjct: 181 EGFYGAFSDLLETVG--QPTEKHEKNMRMIRRVFGRAHPTGREIATLRGIVR---RANQR 235 Query: 253 SSRRNNVLLQKTEK 266 +S + + +K Sbjct: 236 ASASDTPRTSRNDK 249 >gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum borinquense DSM 11551] gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum borinquense DSM 11551] Length = 249 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 7/230 (3%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKEAIAD 83 N+G +ARAM NF LT L+LVNP P +A + +A V+ + E + + Sbjct: 17 PGNVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEV-TFDEVVEE 75 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIALSNA 142 H + T N ++ K V P + + + E + + + ++FGRE GL N+E+A + Sbjct: 76 YHTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELARLDE 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 I S P + +P LN+ QA ++++E ++ ++ + AT+ E+ F D E Sbjct: 136 ICSIPASDDYPVLNLGQAATILMYELRSLTVDETQLP-DVERERATESEIERFYDNFENF 194 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV-STLDKFSR 251 LE + K+ K + + + R EV L G+ ++F R Sbjct: 195 LEHAEHRD--HKRPKTMRMIRRLIGRAHPTDREVHTLTGLFRRATNRFDR 242 >gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 3/226 (1%) Query: 28 IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87 +G VAR NF + LRLV PR +A + + V+ F+ L EA++D + Sbjct: 1 MGSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQRV 60 Query: 88 YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147 A+ R + + + + E + SG V ++FGRE GL+NEE+ LS+ ++ Sbjct: 61 VASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRVVRLH 120 Query: 148 VNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205 +PSLN+S AV +++ + + I + ++ + + A +L + L E L + Sbjct: 121 TVDHYPSLNLSHAVAIVLHDLQRSRIGAAADDQQALQASEAAAPPQLEACLRDAEALLLD 180 Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 G+ P K + + + + R + +E+ +LRG+V L R Sbjct: 181 VGFLLPHTAKAR-MAKIKGLLRRASIQAQELAMLRGMVRQLRWAIR 225 >gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 238 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 5/237 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 V++LV+P NIG VAR NF + LRLVNPR + A + +A ++ + Sbjct: 3 VVVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIH 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+ AI D + AT R + + P A L + ++FGRE GLTN Sbjct: 63 PDLEAAIGDCSRVIATCGRLDHGGIPLQTPDTAINWL---LAGDPPHALVFGREDRGLTN 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ L +++ +PSLN+S AV +++ + + + + K+ +PA +L Sbjct: 120 DELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARHQLQARAPQAKD-PSPAPAADLTG 178 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 LD L E G+ P + + + + + R EEV L RG+V L R Sbjct: 179 LLDDAAELLLEAGFLLPHTRAAR-MGKVRDLLQRATCRAEEVALFRGMVRQLRWAIR 234 >gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 2/240 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +A+ + + + +VF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCKVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++AI D + A+ R S+ E N+ IIFGRE GLTN E Sbjct: 72 LQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNSE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+N + P + PSLN+S AV ++++E ++S + +K N ++K +F+ Sbjct: 132 LLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVYDTFV 191 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 + +E L GY K K+ + +R E+ +LRGIV ++ F S ++ Sbjct: 192 E-IEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSIHELNVLRGIVHQINWFLNNSKKK 249 >gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 223 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M NF L ++RLV PRDGWP+ A ++A AD ++D +VF + EA+AD ++ATT R Sbjct: 1 MANFGLGEMRLVTPRDGWPNPSAGPAAAGADFILDKAQVFESTAEAVADCAHVFATTVRK 60 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R K V+ P++AA ++ +FG ER GL E++AL+ I++ P++P F S Sbjct: 61 RGVTKPVVTPEQAADAIHAEP---GRSAFLFGPERSGLETEDVALARTILTVPIDPEFGS 117 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 LN++QAV+L +E + ++ ++ PA + EL + +LE LE +GYF P + Sbjct: 118 LNLAQAVILCAYEWSKRKGLAQPPK-EDLLPPAPQDELEGLIAHLERMLEPKGYFLPESR 176 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRN 257 L + +P EV LRG++S+L++ + + + Sbjct: 177 ADATRRTLRGVLTKPGWNHLEVRTLRGVLSSLEREPGRGAPGS 219 >gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605] Length = 243 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 7/241 (2%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P NIG VAR NF +++LRLV PR S++A + + ++ + V +L Sbjct: 2 LVEPAGPLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDLL 61 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWGLTN 134 AI D + R + + P++A L SG + ++FGRE GL+N Sbjct: 62 TAINDCRRTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLSN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192 E+ L ++ +PSLN+S AV +++ E + ++E PA L Sbjct: 122 SELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSGTTETRCIEPPSPDPAAAKAL 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + ++ L E G+ + + + + R + EEV LLRG+V L R Sbjct: 182 SACIEDASDLLLEAGFLLEHTAAAR-MAKVRDLLQRATVRAEEVALLRGMVRQLRWAIRA 240 Query: 253 S 253 Sbjct: 241 K 241 >gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus DSM 10642] Length = 230 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 14/229 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+ ++ ENIG +AR M NF +L L N S+++ ++A+A V+D N Sbjct: 4 VVLVELKIPENIGFIARVMKNFGFEKLVLYNCNV---SKESYITAAHAKDVLDKAVKVEN 60 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 LKE + + + + TT R+R + + P L E I I+FGRE +GL +E Sbjct: 61 LKEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMIK--GETAILFGREDYGLYDE 118 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L N I+S P + +P +N+S A ++++E S K E+ AT+ ++ Sbjct: 119 ELKLCNVIVSVPTSEEYPVMNVSHAAAVILYEL------SKGKFEFEKEEIATQKDVDRL 172 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 ++Y E ++ + P + +M L F R L + EV + GI+ Sbjct: 173 VEYFEKLMKSIWF--PEHRIGRMKVVLKRAFGRAALTKYEVDAISGIIR 219 >gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160] Length = 264 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 6/236 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70 + +V + N+G +AR+M NF L++L LV+P + P +A + +A V+ + Sbjct: 1 MPNIAVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDVLPN 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRER 129 + + T N + K V P E A + +E +V I+FGRER Sbjct: 61 ATEVE-FSYLTEQFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN+E+A + I S P + +P LN++QA ++++E E ++ + ++ K+ + A + Sbjct: 120 VGLTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELRELTVEET-QHPKQAHERADE 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 E+ + L E G P EK K + R E LRG++ Sbjct: 179 HEIEGLHETFSEYLHEVG--HPEEKIPKTERLFRRLAGRASPTGREARTLRGVLRR 232 >gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 250 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 2/239 (0%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P N+G VAR NF + +LR+V+P+ S +AR + + RVF + Sbjct: 12 VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCRVFDD 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+ D + A+ R N S E N+ IIFGRE GLTN E Sbjct: 72 LQKAVFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNNE 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L+N + P + PSLN+S AV ++++E ++S + + N ++K +F+ Sbjct: 132 LLLANKTFNIPTSQDNPSLNLSHAVSIVLYELNKSSKKNLNNESRAFNLASSKAVHDTFM 191 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + +E L GY K K+ + +R E+ +LRGIV ++ F S + Sbjct: 192 E-IEEMLMRVGYLLKHTSKAKI-SKFKNFTLRANTSMHEINVLRGIVHQINWFLNNSKK 248 >gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 228 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVK-----PEATQPAVAGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D ++ L VE +K+ D L+ R L + + +L ++ ++K + Sbjct: 179 DRMDRLLVTL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKSLPK 228 >gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916] Length = 241 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 9/239 (3%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 +P N+G VAR NF + LRLV PR A + + V+ S R++ L A Sbjct: 2 EPAGPLNVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAA 61 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++D + AT R + L P EA + Q + ++FGRE GLTN E+ LS Sbjct: 62 VSDCSRVVATAGRLDHGTIP-LGPPEAVLPWAISGSGQQPIALVFGREDHGLTNAELLLS 120 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-------EQNTPATKGELL 193 +I+ + +PSLN+S AV +++ + S + PA L Sbjct: 121 QRVITLHSSDTYPSLNLSHAVAVVLHDIARLQTGPSPHAEPVLVSPETPETEPAGPKALE 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + LD E L E G+ + + + + + R + +EV LLRG+V + R Sbjct: 181 ACLDDAEELLLEVGFLMKHTARAR-MAKVRGLLQRGLIRADEVALLRGMVRQMRWAVRH 238 >gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098] Length = 253 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFS 75 ++LV + ENIGM ARA N +RLV P + W EKAR + V+D V+V Sbjct: 8 VVLVQTRFPENIGMAARACVNMGSRSIRLVAP-ERWDREKARPLATPKGQGVLDDVQVLP 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ A+AD + TTAR +S+L+P++AA + + + G+ V I+FG E GL N+ Sbjct: 67 DVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDND 126 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-------- 187 I +++ P NP SLN++Q+VLL+++EC + + + + + TPA Sbjct: 127 AIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAKA-VRARQHEAAGEKTPAEGGSGRVI 185 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + + LD L+ L ++ + R ++ R E L G+ + Sbjct: 186 SSADYERLLDNLKDMLLRLDCLHGDNPDYFLMPW-RRLLARAQVRRHEYDALMGLCRQVR 244 >gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus infernus ME] Length = 226 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 11/227 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P+ G N+G VAR M NF +LR+V R +++A+ + +A +++ + + Sbjct: 4 VILVHPKYGGNVGSVARVMKNFGFKELRIVGDRKII-NDEAKMMAVHAKDILEKAKFYET 62 Query: 77 LKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI DL FI AT+ AR +RN + + P+E A + E N+G++FGRE GL Sbjct: 63 FDSAIEDLDFIIATSGARGGDRNLKRVPITPRELAEKIKEVR---GNIGLVFGREDDGLY 119 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 NEE+ + ++S P + +P +N+S AV ++++E + + + ++ + A+K + Sbjct: 120 NEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYELYISKVGNKFLDINIRE--ASKEDKE 177 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + ++++ P KK+ + R + +E + L Sbjct: 178 LLIKKFNEFIDKKD--IPEHKKELCKIIFKRLVNRAFITGKEAWTLM 222 >gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus NA1] Length = 239 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 7/228 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV+P+ NIGM+AR M NF +L L+NP +E++ + +A V++ + Sbjct: 5 VILVEPEGPANIGMIARTMKNFGFNELVLINPNI---TEESYLYAVHARDVLERAAIVET 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EA+ + TT + + AP + +GI FGRE GL NEE Sbjct: 62 FEEALGLVDLAVGTTGKPGKRYIPDRAPMMPWELAEALQGYSGRIGIFFGRESIGLKNEE 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + ++ P + ++P +N+SQAV ++++E + K + PAT+ E + + Sbjct: 122 LERMDLTVTIPTSEIYPVMNLSQAVAVILYELAKGR----RKAIHPSLEPATREEKEALI 177 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 L+ Y + E+++ + R L EV L G + Sbjct: 178 RTWGRLLDVLDYPKDPERREVFVKIFRRFVGRTILYGREVHTLIGPLR 225 >gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 236 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 2/236 (0%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +V+P NIG +AR NF++ +LR+V+P+ S +A+ + I++ RVF++++ Sbjct: 1 MVEPNGPINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIE 60 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +AI D + AT R + E N+ I+FGRE GLTN E+ Sbjct: 61 QAIFDCDLVLATCGRIDLSNDIECENPEVISKWISSFKVINNLAILFGREDRGLTNSELL 120 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 ++ I + + +PSLN+S AV ++++E + S + +K++K N ++K SF D Sbjct: 121 FAHKIFNIKTSQDYPSLNLSHAVAIILYELNKCSKNTPQKDLKVFNLASSKQIYESFKD- 179 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 LE L GY K+ ++ + E+ +LRGIV + F S Sbjct: 180 LEEILIRTGYLLEHTSFSKI-SKFKKFILKAKTSSHEINVLRGIVRQIKWFLNNSK 234 >gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4] Length = 233 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 7/238 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIGM+AR M NF ++L LVNP +E++ + + +A V++ + Sbjct: 2 ISLVLVEPEGPANIGMIARTMKNFGFSRLVLVNPN---LTEESYAYAVHATDVLERAVIV 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 EA+ TT + F AP + VG+ FGRE GL N Sbjct: 59 DTFDEALGLFDLTVGTTGKPGKRFIPYRAPLYPWELRETLNGYTGEVGLFFGRESIGLKN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ + I++ P + +P +N++QAV ++++E + + E PAT+ E + Sbjct: 119 DELERLDLIVTIPTSDAYPVMNLAQAVAVILYELSKA----KPEPSVEALKPATRDEKEA 174 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + L Y + E++ + + L EV L G + K + Sbjct: 175 LVRVWAELLNVLNYPKDEERRAVFVKVFRKAVGKAFLYGREVHTLIGPLRRAVKRLEE 232 >gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1] gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus marisnigri JR1] Length = 232 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+L++P N+G AR M NF T+L LVNP + A +++A V++ Sbjct: 1 MPEISIVLIEPLYEGNVGFTARVMKNFGFTRLVLVNPCT--LGDDAIMRASHARDVLEDA 58 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 R +K+ + F+ ATT +++ + P A + E + V I+FGRE Sbjct: 59 RRM-TIKKVYNEFDFVVATTGEVSKSVCTPMRMPYYAPAEVREIVGDIDGTVAILFGREN 117 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 WGL N E+A +N I + P + ++P LN+S AV ++ +E + A+ Sbjct: 118 WGLANTELARANLICTIPTSEIYPILNLSHAVGILCYELANL--------PRGTYPLASP 169 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 E+ S +++ L P K++ + + + R +L E L G++ + Sbjct: 170 VEMDSLYRHIDAFLNRID--HPDFKRENTMTLIRRVLGRTKLTIREASTLHGLMRRTEWH 227 Query: 250 SRQS 253 Sbjct: 228 LENK 231 >gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6] gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii GP-6] Length = 245 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 15/251 (5%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV+P N+G VARAM NF L LVNP A +++A V+ R Sbjct: 2 NLRVVLVEPLYEGNVGSVARAMKNFGFHDLALVNPCKIEDYGCA--MASHARDVLQMSRS 59 Query: 74 FSNLKEAIADLHFIYATTARN-----RNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGR 127 FS L EA+ + + TT + + + P L E++ + V ++ GR Sbjct: 60 FSTLAEALEGANLVVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGR 119 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GL ++EI+L + I+S P + +P +N+S + ++ +E SS A Sbjct: 120 EDCGLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYELSGIGSNSSS-----SVQMA 174 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 K L + L + Y P K+ L L IF R EL E L GI+ + Sbjct: 175 RKETLNLLQERAGDLLADIAY--PEHKEDYTLLMLRRIFGRAELTEREARALLGIIKRIR 232 Query: 248 KFSRQSSRRNN 258 + ++ Sbjct: 233 WRISHGQKGSD 243 >gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 228 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V++FS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R + P E VL E++ + ++FGRE GLTNEE Sbjct: 64 LAEALADVDFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVK-----PEAAEPAVAGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D ++ L VE +K+ D L+ R L + + +L ++ ++K + Sbjct: 179 DRMDRLLVTL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228 >gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568] gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia proteamaculans 568] Length = 228 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+ F+ Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGDILDGVQTFAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD+ F ATTAR+R F P++ L+ER ++FGRE GLTNEE Sbjct: 64 LEQALADVDFTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E VS+ Q A +G+L + Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMKVSAP-----QEPVANEGQLKALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L G + + + L L + + +L ++ ++K Sbjct: 179 QRADGLLGALGVGDDQKLRDWLHQRL------GTLQQRDTAMLHTLLHDIEK 224 >gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 228 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV+P EN+G ARAM + LR+V AR + + ++D+V+VFS Sbjct: 5 IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHASGDILDNVQVFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R ++ P E VL E++ + ++FGRE GLTN+E Sbjct: 64 LAEALVDVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E V E PA G+L + Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAEFMQVK-----PEAVQPAVAGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 D L+ L VE +K+ D L+ R L + + +L ++ ++K + Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228 >gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1] gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1] Length = 245 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM +QLR+V D W AR + A ++D+V+ F+ L Sbjct: 17 ILVSPARPENIGAAARAMKTMGFSQLRIVAS-DAWQDPAARRVAHGAGEILDNVQTFATL 75 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+ Sbjct: 76 AEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ + + V + + A +L + Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSKLNQVEAPVA-----SAADGQQLQALRQ 190 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + + + + L + + +L ++ ++K Sbjct: 191 RFHQLLAQLDVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEK 235 >gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1] gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.] gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus kodakarensis KOD1] Length = 235 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 7/238 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIGM+AR M NF ++L L+NP +E++ + + +A V+++ + Sbjct: 2 ISVVLVEPEGPANIGMIARTMKNFGFSRLVLINPN---LTEESYAYAVHARDVLENALIL 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++A+ F TT + F AP ++ VGI FGRE GL N Sbjct: 59 DSFEKALELFDFTVGTTGKPGKRFIPHRAPLMPWELVGLIKDYPGEVGIFFGRESIGLKN 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ + ++ P + +P +N++QA ++++E + + E PAT+ E + Sbjct: 119 EELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYELSK----KRPEPYVEALKPATREEKEA 174 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + E L Y + E++ + R L EV L G + K + Sbjct: 175 LVRTWEKLLNTLDYPKDAERRDVFVKVFQRAVGRAFLYGREVHTLIGPLRKALKRLEE 232 >gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] Length = 237 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I + Sbjct: 2 SFNNISFILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIIN 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V L+ A+ + ++ AT+AR RN + + ++I + + +FG E Sbjct: 62 AKVHETLESAVKKVDYVVATSARFRNKNIKHINLDD-----LKKIDFNKKIAFLFGSEAS 116 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATK 189 GL+N EI+ +N + P NP F SLN+S +V+++ + K K + A+K Sbjct: 117 GLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASK 176 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ + + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K Sbjct: 177 KDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236 Query: 250 S 250 Sbjct: 237 G 237 >gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + + L ++ + L L + + +L ++ ++K S Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230 Query: 255 R 255 R Sbjct: 231 R 231 >gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus vulcanius M7] Length = 227 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ G N+G +AR M NF+ +LR+V ++ +++A + +A ++++ + + Sbjct: 2 ISVVLVNPKYGGNVGSIARVMMNFDFKELRIVGSKE-ILNKEAYMMAVHAKDILNNAKFY 60 Query: 75 SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +EAI DL F+ AT+ AR +RN + + PKE A+ L E NVGI+FGRE G Sbjct: 61 DTFEEAIKDLDFVIATSGARGGDRNLKRVPITPKELALQLLEIE---GNVGIVFGREDDG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LTNEE+ + ++S P + L+P +N+S AV ++++E + + +V + A++ + Sbjct: 118 LTNEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYEIYSTRVGNRFLDVNMRE--ASRKD 175 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 ++ ++ P KK+ + R + +E + L Sbjct: 176 KDLLINKFNEFIDRNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 223 >gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304] Length = 261 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + + L ++ + L L + + +L ++ ++K S Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230 Query: 255 R 255 R Sbjct: 231 R 231 >gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6] Length = 261 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSSDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + + L ++ + L L + + +L ++ ++K S Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230 Query: 255 R 255 R Sbjct: 231 R 231 >gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1] gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 253 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 112/246 (45%), Gaps = 6/246 (2%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P + + P + +VD + N+G +ARAM NF +L LV+P +A + + Sbjct: 5 STPTTRPAMSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGH 64 Query: 64 AD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NV 121 A ++ R + +++ H + T N + P L + + + Sbjct: 65 AREDILPEAREL-SFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPT 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++FGRER GLTN+E+A + + S P + +P +N+ Q+ + ++E + ++ ++ Sbjct: 124 ALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDV 183 Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 E++ A + E+ F ++ L+ Y P EK+ K + L + R E+ + G Sbjct: 184 ERHR-ADEAEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHG 240 Query: 242 IVSTLD 247 ++ + Sbjct: 241 LLRRAE 246 >gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 235 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 5 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 62 Query: 77 LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E L ++ AT+ + + L P+E A + N+GI+FGRE +GL Sbjct: 63 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NEEI +++I+ P + +P +NI+ A ++++E EK +E A + EL Sbjct: 120 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 173 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L + P K+K I R L + E + G++ + Sbjct: 174 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 225 >gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB] Length = 245 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM +QLR+V D W AR + A ++D+++ F+ L Sbjct: 17 ILVSPARPENIGAAARAMKTMGFSQLRIVAS-DAWQDPAARRVAHGAGDILDNIQTFATL 75 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+ Sbjct: 76 ADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ + V + + A +L + Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSTLNQVEAPVA-----SAADGQQLQALRQ 190 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L + + + + L + + +L ++ ++K Sbjct: 191 RFHQLLAQLEVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEK 235 >gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp. FS406-22] Length = 228 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ N+G +AR M NF +LR+V R +E A + +A ++D+ + + Sbjct: 3 ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDRSIINNE-AYMMAVHAREILDNAKFY 61 Query: 75 SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 EAI DL F+ AT+ AR +RN + + PKE A + E NVGI+FGRE G Sbjct: 62 KTFDEAIEDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGNVGIVFGREDDG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEEI + ++S P + +P +N+S AV ++++E + + ++ + A+K + Sbjct: 119 LRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVGNKFLDINMRE--ASKED 176 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + +++ P KK+ + R + +E + L Sbjct: 177 KELLIKKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 224 >gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 13 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70 Query: 77 LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E L ++ AT+ + + L P+E A + N+GI+FGRE +GL Sbjct: 71 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NEEI +++I+ P + +P +NI+ A ++++E EK +E A + EL Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L + P K+K I R L + E + G++ + Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233 >gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b] Length = 234 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM ++LR+V D W AR + A ++DSV+ + L Sbjct: 6 ILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDSVKTYDTL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+ D+ F ATTAR+R F+ P + +L E+ + ++FGRE GLTNEE+ Sbjct: 65 SEALQDVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEEL 124 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ + + V + A +L + Sbjct: 125 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVVAQPAAVADGQQLQALRA 179 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + + L + + +L ++ ++K Sbjct: 180 RFQQLLVRLEVDDDAKMADWIDQRI------GLLEQRDSAMLHRLLHDVEK 224 >gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049] Length = 241 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 6/241 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73 + +VD + N+G +AR+M NF L++L LV+P + P +A + A D ++ + R Sbjct: 2 ISVAVVDAETPGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNART 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132 + + + H + T N + V P L + + + ++ ++FGRER GL Sbjct: 62 V-TFDDIVENYHTVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 +N+E+A + I S P + +P LN+ QA ++++E E ++ + ++ ++ +T A + Sbjct: 121 SNDELARLDVICSIPASASYPVLNLGQAATIVLYELRELTVDET-QHPEQLHTLAETPAV 179 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + + L G P EK+ K + R + E LRG+ + + Sbjct: 180 EGLHEEFDRFLGAIG--HPEEKQHKARRLFRRVLGRAQPTGRETKTLRGLFRQARQRIER 237 Query: 253 S 253 + Sbjct: 238 A 238 >gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661] gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661] Length = 233 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P+ EN+G ARAM +LR+VN + AR + A ++D+ + +L Sbjct: 6 ILVSPRRPENVGAAARAMKTMGFDELRIVNSQ-AHLEPAARWVAHGAGEILDNATHWDSL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+AD+ F ATTAR+R F+ P++ +L E+ Q+ ++FGRE GLTNEE+ Sbjct: 65 DAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTGLTNEEL 124 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 AL + + P+ +PSLN+ QAV++ ++ VS+ K PA +L + Sbjct: 125 ALVDVLTGIPMAADYPSLNLGQAVMVYCYQLSALRQVSAIK-----EAPADAQQLDALRQ 179 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+ L + + L L + + +L ++ ++K Sbjct: 180 RLDRLLVSLEVSEDSKLVDWLAQRL------GLLEQRDNAMLHRLLHDVEK 224 >gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272] Length = 261 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGYGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + + L ++ + L L + + +L ++ ++K S Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230 Query: 255 R 255 R Sbjct: 231 R 231 >gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus profundus DSM 5631] Length = 234 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 19/235 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 + LV ++ EN+G VAR M NF +L L N + S ++++A ++ + V Sbjct: 2 ISVYLVGLKIPENVGFVARVMKNFGFEKLYLYNCKVTTVS---FKTASHARDILRNAVVL 58 Query: 75 SNLKEAIADLHFIYATTA-----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + ++ + TT R K + P+E L + + + FGRE Sbjct: 59 RKFDDILDHVNMLVGTTGVTAYSYERYIRKPIFTPEEFRNFLEGKKGE---IAVAFGRED 115 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 +GL NEE+ L + ++S P NP +P +N+S AV ++++E + +K + T Sbjct: 116 YGLFNEELELCHMLVSVPTNPEYPVMNVSHAVAVILYELSKGKYGLEDKTI------VTA 169 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 E+ ++ E + E Y P + ++ L I R + R E+ +L GIV+ Sbjct: 170 REIEKLVENFEKLMLETWY--PRHRIERTKIALRRILGRSLITRRELAVLHGIVT 222 >gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM 2661] gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ N+G +AR M NF +LR+V + +E A + +A ++D+ + + Sbjct: 5 ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFY 63 Query: 75 SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + EAI DL F+ AT+ AR +RN + + PKE A + E N+GI+FGRE G Sbjct: 64 NTFDEAIGDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGNIGIVFGREDDG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEEI + ++S P + +P +N+S AV ++++E + + ++ + A+K + Sbjct: 121 LRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYTKKVRNKFLDINMRE--ASKED 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + +++ P KK+ + R + +E + L Sbjct: 179 KELLIRKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 226 >gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans 91-118] Length = 228 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 8/230 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +++L LV P E A SA A+ V+ +F+ L EA+AD + TAR Sbjct: 1 MKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIFATLGEAVADCTLVIGCTARA 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R L P E A + V +FGRER GLTN+E+ L +A + P +P F S Sbjct: 60 RRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208 LN++ AV ++ +E + + E ++ PA+ +L L +L+E + Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAERAPAAAPGLRDGPASHAQLEGMFGQLGDTLDEIDF 179 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 + + L + +R E+ +EV L+RGI+S + + + + N Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLAKQAGN 228 >gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 237 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S IL PQL ENIG ARA+ NFN +L +V P+ +P++K ++S A +I + Sbjct: 2 SFSNISFILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAKNLIIN 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V L+ A+ + + AT+AR RN + + ++I + + +FG E Sbjct: 62 AKVHETLESAVKKVDCVIATSARFRNKNIKHINLDD-----LKKIDFNKKIAFLFGSEAS 116 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATK 189 GL+N EI+ +N + P NP F SLN+S +V+++ + K K + T A+K Sbjct: 117 GLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGVKYSKSKKVTLASK 176 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ + + LEE+ +F+P+EK+ ML++L SIF + EL +E +L + ++L K Sbjct: 177 KDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236 Query: 250 S 250 Sbjct: 237 G 237 >gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032] gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter turicensis z3032] Length = 239 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 13/248 (5%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M PY ++ + P IILV P EN+G ARAM T+LR+V AR Sbjct: 1 MYPYHRITESLMRLP-IILVSPARPENVGAAARAMKTMGFTELRIVES-AAHLDPAARRV 58 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + A ++D+ + + L A+ D+ F ATTAR+R F P++ +L E+ Sbjct: 59 AHGAGDILDNTKRYDTLAAALEDVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPV 118 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++ + +N Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNT 173 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 A + +L + ++ L G ++ + L L + + +L Sbjct: 174 PTAAPQADQQQLKALRLRIDALLTTLGVEDDLKMADWLQQRL------GLLEQRDTAMLH 227 Query: 241 GIVSTLDK 248 ++ ++K Sbjct: 228 RLLHDIEK 235 >gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602] Length = 228 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM LR+V+ + +A + + ++ + FS Sbjct: 5 IILVSPARPENVGAAARAMKTMGFASLRIVDS-EAHLKPEAGWVAHGSQDILQNALHFST 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ F ATTAR+R F P+E + L E+ + ++FGRE GLTNEE Sbjct: 64 LAEALADIDFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ + V+S K A G+L + Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVFCYQLSSLNQVTSVKP-----ENAEAGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + LE G E +K+ D L+ L + + +L ++ ++K Q Sbjct: 179 ARVGRLLENVG----AEDDQKLSDWLHQRLG--LLQQRDAAMLHTLLHDIEKKLTQ 228 >gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech586] Length = 233 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 12/241 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM +LR+V+ R AR + + ++D+V VF Sbjct: 5 IILVAPARPENVGAAARAMKTMGFGRLRIVDSR-AHLEPAARWVAHGSGDILDAVDVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE Sbjct: 64 LADALADIDFTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ V+ + + PA G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLASLMQVAVAEPM-----PAESGQLGALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 + L G ++ +K+ D L L + + +L ++ ++K + Sbjct: 179 ERFSRLLVRVG----AQQDEKLRDWLQQRLG--LLEQRDNAMLHRLLHDVEKALSAEDKG 232 Query: 257 N 257 Sbjct: 233 K 233 >gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591] gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591] Length = 233 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM +LR+V+ AR + + ++D VF Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRLRIVDS-TAHLEPAARWVAHGSGDILDGAEVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F +P + VL E+ ++ ++FGRE GLTNEE Sbjct: 64 LTDALADVEFTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ S + + TPA G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQL-----ASLMQVAAAEPTPAESGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 D L G ++ +K+ D L L + + +L ++ ++K Sbjct: 179 DRFARLLVRVG----AQQDEKLRDWLQQRLG--LLEQRDNAMLHTLLHDVEK 224 >gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio alkaliphilus AHT2] Length = 304 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P+ ENIG AR N + L +V R+ + ++++ A +ID + + Sbjct: 19 IVLKNPKFEENIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHAT 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EA+A + AT+AR + + P A+ + V ++FG E GLTNE+ Sbjct: 79 VAEALAPFGRVIATSARQGRQ-RGMCPPPRTAMQAALPYLAANRVALLFGPEDRGLTNED 137 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELLSF 195 + L + + + P F SLN++QAV ++ +E + + + + AT EL + Sbjct: 138 LYLCHQLTTIPTA-DFSSLNLAQAVAVLCYELHTAAHEAQTGRGPVVRPALATVHELEAM 196 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 ++E L++ G+ RP + + ++ S+ R L +E ++RG + Q + Sbjct: 197 YGHVEQVLQKVGFLRPEDS-SYWMKNIRSLLGRVGLRAKEARVVRGFCRQFLWYDAQRAT 255 Query: 256 RNNVLLQ 262 + Sbjct: 256 AGAEVAP 262 >gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 269 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 24/267 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVI---- 68 ++L PQ +N+G AR M NF L++L +V P G P ++ D V+ Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVLARAR 65 Query: 69 ----------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 D + +L+ AI ++ TT+R + L P+ A L R G Sbjct: 66 RMARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSAQG 124 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEVARAAPPPGAA 183 Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 + + PA + + + L GY P + + +L D + R + + Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242 Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260 EV LL G + +L++ R + R + Sbjct: 243 REVELLLGALRSLERTLRLAPRGDGTA 269 >gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum boonei T469] Length = 243 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 17/234 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ V+PQ NIG +AR M NF L LVNP + E A S +A +I++ + +N Sbjct: 13 IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70 Query: 77 LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E L ++ AT+ + + L P+E A + N+GI+FGRE +GL Sbjct: 71 FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NEEI +++I+ P + +P +NI+ A ++++E EK +E A + E Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFES 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + L + P K+K I R L + E + G++ + Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233 >gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1] Length = 236 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 8/238 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K ++LV+P+ NIG VAR+M N ++ LR+V +A S + + Sbjct: 1 MLDLDKIISVVLVEPKYQGNIGAVARSMANSGISDLRIVK---TPIETEAIYRSMHGRYI 57 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D+ ++F++LKEA++ I T+ +++ K P + +GQ V ++FGR Sbjct: 58 LDNAKIFNSLKEAVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGR 117 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GL EE+ + N + NP +P N+S AV ++++E ++ + + + Sbjct: 118 EDNGLNYEELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIKANYSGNATITHD---LI 174 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 + ++ + LE L + Y ++ +++ L I R + E F + GI+ Sbjct: 175 GRDKIDTLAGRLEELLAKIDY--NEQEIDTLMNMLNRIIARANITDSEFFKIMGIMRQ 230 >gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus fervens AG86] Length = 227 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 115/229 (50%), Gaps = 10/229 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ N+G +AR M NF +LR+V + +E A + +A ++D+ + + Sbjct: 2 ISVVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFY 60 Query: 75 SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ EAI DL F+ AT+ AR +RN + + PKE A + E +GI+FGRE G Sbjct: 61 NSFDEAIKDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGKIGIVFGREDDG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NE+I + ++S P + +P +N+S AV ++++E + + ++ + A+K + Sbjct: 118 LRNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVENKFLDINMRE--ASKED 175 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 + ++ P KK+ + R + +E + L Sbjct: 176 KELLIKKFNEFIDRNKKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 223 >gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 228 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 8/230 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +++L LV P E A SA A+ V+ +F+ L EA+AD + TAR Sbjct: 1 MKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIFATLGEAVADCTLVIGCTARA 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R L P E A + V +FGRER GLTN+E+ L +A + P +P F S Sbjct: 60 RRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208 LN++ AV ++ +E + + E ++ PA+ +L L +L+E + Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQLEGMFGQLGDTLDEIDF 179 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258 + + L + +R E+ +EV L+RGI+S + + + + N Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLARQAEN 228 >gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC 35316] gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cancerogenus ATCC 35316] Length = 228 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 16/234 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T+LR+V R + + ++D++ + Sbjct: 5 IVLVQPARAENIGAAARAMKTMGFTELRIVGS-VAHLEPATRWVAHGSGDIVDNITTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P+E +L E+ + ++FGRE GLTN+E Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194 +AL++ + P+ +PSLN+ QAV++ ++ + E A + + S Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLASLMQITPPPVSATDENQLTALRARVES 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + +L ++ ++ KM D L R L + + +L ++ ++K Sbjct: 184 LISHLGVADDQ-----------KMTDWLQQRLGR--LEQRDTAMLHRLLHDIEK 224 >gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582] gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582] Length = 225 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM + LR+V+ D AR + A ++D+V+ F Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFSSLRIVDS-DAHLQPAARWVAHGAGEILDAVQTFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD+ F ATTAR+R F P+ L+ER ++FGRE GLTNEE Sbjct: 64 LEQALADVDFTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ V++ + A G+L + Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSALMSVAAPPSPT-----ADGGQLQALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L+ + + + L L + + +L ++ ++K Sbjct: 179 QRADRLLQNLEVGDDQKLRDWLHQRL------GSLPQRDTVMLHTLLHDIEK 224 >gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13] Length = 228 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D V+ F+ Sbjct: 5 IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGEILDGVQTFAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P++ L ER ++FGRE GLTNEE Sbjct: 64 LSQALADVDFTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ E VS+ Q T A +G+L + Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMNVSAP-----QETMANEGQLRALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L G + + + L + R + +L ++ ++K Sbjct: 179 QRAEGLLGALGVSDDQKLRDWLHQRLGVLPQR------DTAMLHRLLHDIEK 224 >gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli CFT073] Length = 235 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 69 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231 >gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355] Length = 234 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F L Sbjct: 8 ILVSPARAENIGAAARAMKTMGFNEMRIVAS-DAWQDPAARRLAHGAGDILDRIKTFDTL 66 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+ Sbjct: 67 AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 126 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ + + A +L + Sbjct: 127 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 181 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L + + + L + + +L ++ ++K Sbjct: 182 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEK 226 >gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103] gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103] Length = 247 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM ++R+V D W AR + A ++D ++ F L Sbjct: 21 ILVSPARAENIGAAARAMKTMGFNEMRIVAS-DAWQDPAARRVAHGAGDILDRIKTFDTL 79 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+AD+ F ATTAR+R F+ P++ L E+ ++ ++FGRE GLTNEE+ Sbjct: 80 AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 139 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ + + A +L + Sbjct: 140 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 194 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L + + + L + + +L ++ ++K Sbjct: 195 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEK 239 >gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703] gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii Ech703] Length = 232 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 12/233 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM LR+V+ + AR + + +++ + FS+ Sbjct: 5 IILVAPARAENVGAAARAMKTMGFECLRIVDSQ-AHREPAARWVAHGSSDILERAQTFSS 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F +P++ V+ E+ ++V ++FGRE GLTNEE Sbjct: 64 LADALVDVDFTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ V++ A G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLSSLMQVTAG-----AAPAADSGQLSALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 +E L VE+ +K+ D L L + + +L ++ ++K Sbjct: 179 QRVERLLGRID----VERDEKLHDWLRQRLG--LLEQRDTAMLHRLLHDVEKA 225 >gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1] gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 241 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 6/238 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70 P + +VD + N+G +ARAM NF +L LV+P +A + +A ++ Sbjct: 1 MSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAREDILPE 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129 R + +++ H + T N + P L + + + ++FGRER Sbjct: 61 AREL-SFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN+E+A + + S P + +P +N+ Q+ + ++E + ++ ++ E++ A + Sbjct: 120 VGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVERHR-ADE 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E+ F ++ L+ Y P EK+ K + L + R E+ + G++ + Sbjct: 179 AEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLLRRAE 234 >gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 237 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 135/242 (55%), Gaps = 8/242 (3%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S+ IL PQL ENIG AR M NFN +L +++P+ +P++K ++S A +I Sbjct: 2 SSTNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISK 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +VF NL+ A+ ++ ++ AT+AR RN K + ++I + + +FG E Sbjct: 62 SKVFDNLEPALKNIDYVIATSARFRNK-----NIKHIQLEDLKKIDFTKKIAFLFGSEAS 116 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPAT 188 GL+N E++ +N + P NP F SLN+S +++++ + + + I S N K+ A+ Sbjct: 117 GLSNNEVSYANYTLQIPTNPDFKSLNLSHSLIIIA-QYVSSIIKSKTSNFKKSKKVKTAS 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K E+ + + +L+E +F+P EKK ML++L +IF + EL +E +L + ++L K Sbjct: 176 KKEIHAMTNLCIKNLDEINFFKPKEKKPIMLENLRNIFYKMELSAKETRILASVFASLGK 235 Query: 249 FS 250 Sbjct: 236 KR 237 >gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii TW07627] Length = 228 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + + R + + +ID++ VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AYLEPATRWVAHGSGDIIDNIAVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S L+EA+ D+ F ATTAR+R + P E +L E+ ++ ++FGRE GLTN Sbjct: 62 STLEEALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + + A + +L + Sbjct: 122 EELALADILTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDASADQYQLRA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L K++D + R L + + +L ++ ++K Sbjct: 177 LRERVMSLLTTLAVADDT----KLVDWIQQRIGR--LEQRDTAMLHRLLHDIEK 224 >gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89] gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli UTI89] gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 235 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 69 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231 >gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a] gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972] gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073] gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11] gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a] gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972] gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 185-1] gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 200-1] gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 45-1] gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 153-1] gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli WV_060327] gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 60-1] Length = 228 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 196-1] Length = 235 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 69 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + + A + +L + Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 184 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231 >gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 228 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ AR + + ++D++ + Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDS-VAHLEPAARWVAHGSGDILDNITTYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L+E+ + ++FGRE GLTN+E Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ + V + +L + Sbjct: 124 LALADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQIPQPPAVGT-----DENQLAALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ L + G + + L L + + +L ++ ++K Sbjct: 179 TRVDNLLMQLGVADDQKMADWLQQRL------GRLEQRDTAMLHRLLHDIEK 224 >gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 247 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 125/249 (50%), Gaps = 2/249 (0%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ ++LV+P N+G +AR NF++ +LR+V+P+ S +A+ + Sbjct: 1 MKKKRLNLNVVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRY 60 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ID+ ++F+++++AI D + AT R + E N+GI+FGR Sbjct: 61 IDNCKIFNSIEQAIFDCDLVIATFGRIDLSNDIECESPEDISKWISSFVEINNLGILFGR 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GL+N E+ ++ I++ + +PSLN+S AV ++++E ++S + +K+++ + + Sbjct: 121 EDRGLSNNELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNKSSKNNDKKDLQVLDLAS 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +K SF + +E L + GY K+ + + ++ +LRGIV ++ Sbjct: 181 SKQIYESFKE-IEEMLIKTGYLLEHTANSKISKFKKFLLK-AKTSSHDINVLRGIVHQIN 238 Query: 248 KFSRQSSRR 256 F S + Sbjct: 239 WFLNNSKGK 247 >gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68] Length = 268 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 12/239 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253 + + L ++ + L L + + +L ++ ++K S Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNK 229 >gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli H299] Length = 228 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1] gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88] gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1] gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88] gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli LF82] gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli IHE3034] gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146] gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 110-3] gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 16-3] gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252] gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli TA206] Length = 228 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863] gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509] gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v] Length = 228 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + L L + + +L ++ ++K Sbjct: 177 LRERAMSLLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1] Length = 228 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus okinawensis IH1] Length = 231 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 11/229 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++ILV+P+ N+G +AR M NF + +LR+V +D +++A + +A ++++ + + Sbjct: 3 VIVILVNPKYSGNVGAIARNMMNFGVNELRIVGSKD-ILNDEAYIRAVHAKEILNNAKFY 61 Query: 75 SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL +A D+ FI T+ +RN + + P E A +I G +GI+FGRE G Sbjct: 62 DNLNDATQDIDFIVGTSGAVSGDRNLKRVPITPHELAEK--YKIVDG-TMGIVFGREDDG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+N+E+ L + +S P + +P +N+S AV ++++E +S+ + A+K E Sbjct: 119 LSNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELYVSSLNKPYNVNMRE---ASKLE 175 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 L+ +++ Y P +K+ I R + +E L Sbjct: 176 KDVLLNIFNEFVDKNEYI-PEYRKELCKTIFKRIISRAFISGKEANTLM 223 >gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218] Length = 228 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606] gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606] gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 187-1] gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)] Length = 228 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W] gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W] gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVGWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli] gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O55:H7 str. CB9615] gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185] gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM + LR+V+ + + R + + ++D+ + F+ Sbjct: 5 IVLVAPARPENIGAAARAMKTMGFSSLRIVDSQ-AYLEPATRWVAHGSGDILDNAQHFNT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD+ F ATTAR+R + +P+E +L E+ + I+FGRE GL+NEE Sbjct: 64 LEAALADVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ S +N E A + +L++ Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVFCYQL-----SSLIQNRFETQQLAEQNQLVALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + L + + L + R + +L ++ ++K ++ Sbjct: 179 HRVHRLLSALNVEDDQKLSDWLDQRLGLLAQR------DTSMLHTLIHDIEKALKK 228 >gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli] gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str. 493-89] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-VHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718] Length = 228 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + + A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter smithii DSM 2374] Length = 301 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 178 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D L L+ P KKK L +I R + E L+GI+ Sbjct: 239 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 293 RLKMKMGKQ 301 >gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii DSM 2375] Length = 272 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 33 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 90 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 91 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 149 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 150 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 209 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D L L+ P KKK L +I R + E L+GI+ Sbjct: 210 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 263 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 264 RLKMKMGKQ 272 >gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026] gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026] gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412] gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302] gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 198-1] gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 69-1] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A K +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADKHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061] gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061] Length = 301 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L N I+ V+ + NIG +AR M NF L L L+NP P +A + + Sbjct: 62 ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119 Query: 67 VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++D+ +++ L E + F A+T ++ P L + I + I+ Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 178 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLTNEEI + +S P +P +P LNIS A ++ +E +N + ++E Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 + L D L L+ P KKK L +I R + E L+GI+ Sbjct: 239 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292 Query: 245 TLD-KFSRQ 252 L K +Q Sbjct: 293 RLKMKMGKQ 301 >gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301] gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1] gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A] gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1] gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017] gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 119-7] gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 145-7] gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri 2a str. 2457T] gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA271] gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591] gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671] gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71] gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella flexneri 2930-71] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39] gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952] gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655] gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39] gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952] gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1] gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 78-1] gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 1827-70] gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + + A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T LR+V+ AR + + ++D++ ++ Sbjct: 5 IVLVAPARAENIGAAARAMKTMGFTDLRIVDS-TAHLEPAARWVAHGSGDILDNITTYAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNEE Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ + P+ +PSLN+ QAV++ ++ +S T + + +L + Sbjct: 124 LELADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQISQPPV-----TVSDENQLAALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LE+ G +KM+D L R L + + +L ++ ++K Sbjct: 179 VRADKLLEQLGVADD----QKMVDWLQQRLGR--LEQRDTAMLHRLLHDIEK 224 >gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354] gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5] gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli SMS-3-5] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSSDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + + A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 175-1] gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 84-1] gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 116-1] gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 124-1] gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 85-1] Length = 228 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046] gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B] gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736] gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae 1012] gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 146-1] gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G] gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736] gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74] Length = 228 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + VID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] Length = 247 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 9/243 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDS 70 G I+LV + ENIGM ARA N +RLV+P + W EKA + ++D Sbjct: 3 LDGVQIVLVKTRFPENIGMAARACANMGCPAIRLVDP-ERWDREKAGPLATPKGQSLLDG 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 VRV +L A+A+ + TTAR +++LAP +AA + + + V ++FG E Sbjct: 62 VRVSPDLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPEDR 121 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQN 184 GL NEEI +++ P + SLN++QAVLLM++EC + + Sbjct: 122 GLNNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYECANAVRAVRAFPDAEKAGTSGGG 181 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 T E +D L+ L Y ++ +F R L R E L G+ Sbjct: 182 RAVTAEEQERLMDALKTMLLGLDYLHGDNPDYFLMPW-RRMFSRAGLRRHEYDALMGLCR 240 Query: 245 TLD 247 + Sbjct: 241 QVR 243 >gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86] gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli M605] Length = 228 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + VID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli TA143] Length = 228 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTMADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 21-1] Length = 228 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + VID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEHRDTAMLHRLLHDIEK 224 >gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9] gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9] Length = 235 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 10 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 69 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 184 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231 >gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 2362-75] Length = 228 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50] Length = 228 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L + K++D L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDI----KLVDWLQQCLG--LLEQRDTAMLHRLLHDIEK 224 >gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4196] gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4113] gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4076] gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4401] gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4486] gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4501] gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC869] gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC508] gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4206] gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4045] gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4042] gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC4115] gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli] gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli] gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. TW14588] gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. EC1212] gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1125] gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli O157:H7 str. 1044] Length = 228 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----AILIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 101-1] gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli 3431] gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007] Length = 228 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM + LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----AILIQQPAKSDATADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1] gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 250 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 10/234 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P+ NIG VAR+M N L++L +V R P ++A + S ++++ + + Sbjct: 13 VVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNR---PDDEAFARSMGGRQILENAEIVDS 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+E + + T++ +N K P + + V ++FGRE GL NE Sbjct: 70 LEEIVHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGREDDGLRNE 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L N I P NP +P N+S AV ++++ + + ++ + + + E+L Sbjct: 130 ELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMYRSYV---PSDMIQHESIKPEHEVLLM 186 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + L+I R P K + L I R + E F L GIV + + Sbjct: 187 SNILDIMKLSR---YPAHKMRNAEVMLRRIIGRSMITEREYFKLMGIVRRIKEA 237 >gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus SK60] Length = 278 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 25/265 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L G I++V+ L NIG ARAM LTQL +V P+ E A + +A A Sbjct: 15 SLAAFLAGIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPK-LPIDEDAYAHAAGAKA 73 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----------ERI 115 ++D+V + L++A+ D H++ AT++R R+ + VL+P++AA ++ + Sbjct: 74 ILDAVTICDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAA 133 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMENS 172 + I+FGRE GLTNEE+ L++ I P N + LN++ AV ++ +E E + Sbjct: 134 HRNWQLAIVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYETAELA 193 Query: 173 IVSSEKNVKE---------QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223 + + K P + + L + L LE + P + K M + Sbjct: 194 LTAKTAAEKSIDLTFRQQWDEPPISNEQRLQLENRLLALLENLEIYNPAQS-KVMPQRIN 252 Query: 224 SIFIRPELMREEVFLLRGIVSTLDK 248 + R +L +E LL+ ++ L K Sbjct: 253 RLLSRIQLDIKEYQLLQATIAKLLK 277 >gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101] gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101] gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 57-2] Length = 228 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482] Length = 228 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L + + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium mukohataei DSM 12286] Length = 241 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 6/236 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70 + +VD + N+G +AR+M NF L +L L++P D +A + A ++ Sbjct: 1 MSSVAVAVVDAETPGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPE 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 R + E + + H + T N + K V P L + + + I+FGRER Sbjct: 61 AREI-SFDELVTEYHTVGCTAITNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRER 119 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GLTN+EI + + S P + +P LN+ QA ++++E ++ ++ + A + Sbjct: 120 VGLTNDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELRSLTVEDTQLP-DPTHDRAAQ 178 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 E+ + L+ P EK+ K + R E LRG+ Sbjct: 179 PEIEGLHEQFAGFLDAID--HPEEKRAKTRRLFQRLIGRAHPTGRETTTLRGLFRQ 232 >gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A] gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS] gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739] gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS] gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E24377A] gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC 8739] gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli 53638] gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E110019] gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str. 11128] gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042] gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 115-1] gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 182-1] gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli EC4100B] gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14] gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180] gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520] gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120] gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 117-3] gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88] Length = 228 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium M1] Length = 263 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++ V+ + N+G +AR M NF L +L L+NP E+A + +A +++ Sbjct: 27 ENIYVVFVECESPGNVGFLARTMGNFGLNKLVLINPCT--LKEEAYYQATHARDTVENAM 84 Query: 73 VFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + E + D + FI +T ++ P L + + + I+FGRE Sbjct: 85 IYDTVGEFVKDKKIDFIIGSTGAPGGSYNISRIP-LKPEELAKSMNYNDKIAILFGREGN 143 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GLTN E+ + + I+S P +P +P +NIS A ++++E +N + ++E +T Sbjct: 144 GLTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKNRNEFPVQGLEE----STAI 199 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E + +E ++ P KKK L +I R + E L GI+ L+ Sbjct: 200 EKEYLIKDMEELIDNLN--IPEHKKKNGLKVFKNIVNRAFITGREAHTLIGILRRLNLKI 257 Query: 251 RQSSR 255 + Sbjct: 258 KHGDE 262 >gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197] gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella dysenteriae 1617] Length = 228 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E + D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11] gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989] gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9] gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22] gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171] gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11] gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989] gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str. 12009] gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088] gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010] gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357] gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167] Length = 228 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T] gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T] Length = 228 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV + ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVKVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp. PRwf-1] Length = 286 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 1/187 (0%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 ++P L+ I++V+ L NIG ARAM LT L +VNP+ E + + +A Sbjct: 19 HSPDLRQRLNSVRIVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKHPI-DEDSIAHAAG 77 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A V+ RV L EA++D ++A ++R R+ + V+ P EAA ++ +R V I Sbjct: 78 AQSVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGETKVAI 137 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FGRE GLTNEE+AL++ I NP +P LN++ AV ++ + S + + Sbjct: 138 LFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVIASFFYSRFLQHSHSKLNQT 197 Query: 184 NTPATKG 190 N A K Sbjct: 198 NDTADKD 204 >gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 247 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 12/251 (4%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q++ I+LVD Q G NIG RAM +T+L LV R+ + + R+ + +A V Sbjct: 4 QSNLARIQIVLVDTQDGANIGSTCRAMKTMGITRLVLVGERE-YDENRVRTLALHASDVW 62 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGR 127 D+ + F LKEA+A A T R K S L+P + A + + V I+FGR Sbjct: 63 DNAKRFPTLKEALAQSVLSVAATRRRGKFRKNSALSPLQLASTIQQTGQ--GLVSIVFGR 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E GLT++E+A + +++ P + FPSLN+SQAV ++ + + + Sbjct: 121 ESDGLTDDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTFTLFDTIKTYPVEANPVTQDRC 180 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 K L S +L+E GYF+ ++K L F+R L E+ +V Sbjct: 181 EKAALASC-----EALDEIGYFKLAQEKLWTFRFLRDTFVRAGLTESEIQ---KMVKVFV 232 Query: 248 KFSRQSSRRNN 258 K SR + + Sbjct: 233 KMSRIKAHKET 243 >gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 228 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRRVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227] Length = 228 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGYGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227] gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94] gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC 3083-94] gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae CDC 74-1112] gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC 796-83] gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74] Length = 228 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein From Neisseria Gonorrhoeae Length = 223 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 20/220 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPRD 50 T P L + IIL NIG ARA L +L +V NP Sbjct: 5 TALKPALPDYLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPV 64 Query: 51 GWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 P E++ ++ A V+ + + + L EA+AD A T+R R + Sbjct: 65 FNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQ 124 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 P++ L + G+ V ++FG E +GL+ EE+ N + + NP + SLN++QAV Sbjct: 125 TPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQ 184 Query: 163 LMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 ++ +E + S ++++++ AT ++ L + E Sbjct: 185 VVCYEIFSQT-DSPXTHLQQEDHAATHEQIKGXLAHXESV 223 >gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont] Length = 228 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 12/233 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 ILV P ENIG ARAM ++LR+V D W AR + A ++D V+ + L Sbjct: 6 ILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDHVKTYDTL 64 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+AD+ F ATTAR+R F+ P +A +L E+ + ++FGRE GLTNEE+ Sbjct: 65 SAALADVDFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEEL 124 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + + P+ +PSLN+ QAV++ ++ V++ +L + Sbjct: 125 EQVDLLTGIPMAQDYPSLNLGQAVMVYCYQLSALHQVAAAPVEAAN-----AQQLQALRQ 179 Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L + + + L + + +L ++ ++K + Sbjct: 180 RFHQLLVTLEVSNDAKLADWIDQRI------GLLEQRDSAMLHRLLHDVEKKT 226 >gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263] Length = 228 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + AR + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PS N+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSFNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401] gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 228 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E ++L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894] Length = 228 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM T+LR+V + AR + A ++D+ R + Sbjct: 5 IILVSPARPENVGAAARAMKTMGFTELRIVAS-EAHLDPAARRVAHGAGDILDNTRHYDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ ++ F ATTAR+R F P++ +L E+ ++FGRE GLTN+E Sbjct: 64 LAAALEEVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ + +NV A + +L + Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNVPAVAPAADEQQLKALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 ++ L G ++ + L L + + +L ++ ++K Sbjct: 179 LRIDTLLATLGVADDLKMADWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790] Length = 332 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 6/227 (2%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKE 79 +P+ NIG +ARAM NF LT+L LV+P +A + +A V+ + + + Sbjct: 14 EPETPGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTV-SFDA 72 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIA 138 + H I T ++ V P + +++ + + + ++FGRE GLTN+E+ Sbjct: 73 VVNKYHTIGTTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELT 132 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 + + S P N +P LN+ QA ++++E ++ ++ + A + ++ F ++ Sbjct: 133 SLDEVCSIPANESYPVLNLGQAATVLLYELRSLTLTDTQLP-DVERERADESDIDRFYEF 191 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245 L K++K L + R E+ L G+ Sbjct: 192 FTDFLHSVE--GREHKREKTALMLRRLIARAHPTNREISTLLGLFRR 236 >gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489] Length = 228 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GL N Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLAN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTMADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp. AL-21] Length = 233 Score = 207 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++ V+P+ NIG +AR M NF LT L L+NP + ++ + +A V+ + ++ Sbjct: 2 IYVVFVEPESPGNIGFLARTMKNFGLTNLVLINPCE--LKNESYYQAMHARDVVSNCEIY 59 Query: 75 SNLKEAI--ADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L+E + A++ ATT ++ K + P+ L++ I G N+ +IFGRE Sbjct: 60 ETLEEFLEKANISTAVATTGNAGGSYNISKIAVTPE----TLSDSINYGGNICLIFGREG 115 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL+N+EIAL + I+S P + + +N++ A ++ +E + + PA+ Sbjct: 116 NGLSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYELFKKEKSYPVDTL----EPASA 171 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 E S ++ + + GY P K K I R + E L+G + ++ Sbjct: 172 QEKKSLTAIMDEIIVKLGY--PEHKTKNAQLVFDRIIQRAFITGREAHTLKGTLRRIN 227 >gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 7/242 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+++LV+P+ N+G V RAM NF + QLRLV D + A S A ++ F Sbjct: 6 PIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPF-HSDAVKFSVGARPLLGQAEHF 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+AD+H A T R ++L P E + + + V +FGRE GLT Sbjct: 65 PDLAAALADVHHSVALTRRTGRLRGNLL-PLEELSQRFQSVAAQSRVAFVFGREDRGLTT 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+AL + + SLN++QAV++ ++E ++ Q T + Sbjct: 124 QEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRR----QDRVGIVQRDQPTHDQFEP 179 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L+ + GY P + + + L + + E+ LRG+++ L + + Sbjct: 180 LFQQLDELVHRVGYVNP-SRPEVIPTMLRRLLHQAAPDVAELNQLRGLINRLSESVQDWP 238 Query: 255 RR 256 R Sbjct: 239 GR 240 >gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937] Length = 233 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 12/233 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IILV P EN+G ARAM ++R+V+ AR + + ++D V VF Sbjct: 5 IILVAPARAENVGAAARAMKTMGFGRMRIVDS-TAHLEPAARWVAHGSGDILDGVDVFPT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F ATTAR+R F P + VL E+ + ++FGRE GLTNEE Sbjct: 64 LADALADIEFTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ S + V + T A G+L + Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQL-----ASLMQVVAAEPTQAEFGQLAALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 + L ++ +K+ D L L + + +L ++ ++K Sbjct: 179 ERFSRLLVRVD----AQQDEKLRDWLQQRLG--LLEQRDSAMLHRLLHDVEKA 225 >gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 262 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 12/237 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTNE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L G + + L L + + +L ++ ++K + Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKKPAR 228 >gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS 107-1] Length = 228 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IIL+ P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILIAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790] gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790] Length = 235 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 8/227 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR+M N LT LR+V E AR + + ++D+ R++ Sbjct: 7 ISVVLVEPKYQGNIGAVARSMANSGLTDLRIVK---TPIDEDARRRAMHGLYILDNARIY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ +A++ I T+ +++ K P + +G+ V ++FGRE GL N Sbjct: 64 NSFDDAVSGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNGLNN 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E++ N I NP +P N+S AV ++++E ++ N+ E N + Sbjct: 124 YELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEMIKRVYSG---NIIESNNYISPEHFNI 180 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 ++ E L GY +P K K+ I R + E F + G Sbjct: 181 MINRFEELLNLLGYEKP--KVDKLSVMARRIAARSNITDAEYFKIMG 225 >gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC 51196] Length = 240 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 9/244 (3%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L ++ ++LV + NIG ARAM NF LR+V P D E S+ A Sbjct: 1 MTLPPASPAIAVVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAWQEA--RSAVGAA 58 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++ S R S L +A+AD + T+A +R + ++ A L +R+ + ++ Sbjct: 59 SILASARECSTLADAVADCTCVLGTSAIGDRQPLQPIVDLPAALPWLAQRVA--GRIALV 116 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FG+E+ GLTN +++ +AI+ P P S+N+ QAV + ++E + E Sbjct: 117 FGQEKHGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFARS---GHAPTATEAP 173 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 A +L L L GY +P+ + +L+ ++ R L RE+ LL G+++ Sbjct: 174 KAAPAADLERLTASLHRLLCISGYIKPIAAQGALLEA-RALIHRLTLNREDTHLLTGMLA 232 Query: 245 TLDK 248 +++ Sbjct: 233 KIER 236 >gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82] Length = 228 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + VID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PALAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933] gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 228 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN QAV + ++ + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNXGQAVXVYCYQL-----AILIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638] gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638] Length = 228 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 16/234 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM LR+V + R + + +ID++ ++ Sbjct: 5 IVLVSPARAENIGAAARAMKTMGFNDLRIVAS-EAHLEPATRWVAHGSGEIIDNISTYAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R F P E +L E+ ++FGRE GLTNEE Sbjct: 64 LADALHDISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194 + L++ + P+ +PSLN+ QAV++ ++ + + + +V E A + + Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVYCYQLTSLMQTAAPASSSVDENQLRALRVRAEA 183 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L L ++ ++ KM++ L+ R L + + +L ++ ++K Sbjct: 184 LLSQLNVADDQ-----------KMVEWLHQRLGR--LEQRDTAMLHRLLHDIEK 224 >gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 228 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 3/190 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192 +E+AL++ + P+ +PSLN+ QAV++ ++ + S E A + Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADELQLQALRARF 181 Query: 193 LSFLDYLEIS 202 L L LE + Sbjct: 182 LRLLTTLEAA 191 >gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] Length = 206 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 6/190 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM ++LR+V+ + R + + +ID+++VF Sbjct: 3 ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176 Query: 195 FLDYLEISLE 204 + + L Sbjct: 177 LRERVMALLT 186 >gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus fervidus DSM 2088] gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus fervidus DSM 2088] Length = 231 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 118/242 (48%), Gaps = 19/242 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++ V+P+ NIG +ARAM NF L +L L+NP S++A + +A +I + Sbjct: 2 LENITVVFVEPKTAGNIGFMARAMKNFGLKKLILINPCK--LSKEAYYHAVHAKDIIKNS 59 Query: 72 RVFSNLKEAIA--DLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +V+ +L + + +++ + T+ A +RN + + P+ A + + N I+FG Sbjct: 60 KVYESLNKMLEKENINLLVGTSGVVAGDRNIERISVTPEYLAENIQK------NTAILFG 113 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 RE GL + E+ + + I++ P + +P +N+S A ++ +E + E + + Sbjct: 114 REDHGLYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFK----KMEDTCEIEKEI 169 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A+ E + + + P+ KK+ + +I R L ++E +L GI ++ Sbjct: 170 ASYKEKELLKKEINEVVSKLD--MPIHKKRNAIKVFKNIIGRSFLTKKEFHVLMGIFRSI 227 Query: 247 DK 248 + Sbjct: 228 KR 229 >gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 240 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 3/235 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +L+ P+ EN+G ARA+ N L+ V P AR + +A V+D+ R Sbjct: 4 PVRFVLMRPRNAENLGAAARALKNCGLSDWVWVRPEVEDLEP-ARRLAVHAGDVLDAARR 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+EA+AD ++ T++R + L P+ L R G V ++FG ER GLT Sbjct: 63 ADTLEEAVADCVWVVGTSSRKVEGKRR-LPPRAVGEELVARAPQG-PVALVFGDERSGLT 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N E+ + + + P P PS+N++QAVLL +E + ++ AT EL Sbjct: 121 NAEVERVHDLSAVPTAPEQPSINLAQAVLLYAYEVRVAMLEAAATPPGPLPAAATDAELA 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LE L G+ + + + DL++ R L R+E L + +L K Sbjct: 181 QVESTLESVLTTGGFLVDAQPGRTAVRDLFAPLRRSRLTRKEARLWLAALHSLRK 235 >gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3] gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus Nankai-3] Length = 231 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 11/237 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 PVIILV+P+ G N+G ++R M NF + +L++V + ++A + ++ ++++ + + Sbjct: 3 PVIILVNPKYGGNVGAISRCMMNFGVNELKIVG-NNSIIDKEAEIRAVHSKKILNNAKFY 61 Query: 75 SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ D+ F T+ ++N + + PKE A + +G++FGRE +G Sbjct: 62 GTLQEALEDIDFAVGTSGAVSGDKNIKRIPITPKELAE---KHKTIDGRLGLVFGREDYG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L N+E+ L + +S P + +P +N+S AV ++++E +S+ S + + K Sbjct: 119 LYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYNSSLEKSYNINTNKASKIEKTV 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 LL+ + P +K+ + R + +E L G + K Sbjct: 179 LLNLFGEFVNKNDTI----PEYRKELCKTIFKRLISRAFISGKEAHTLMGAFKHVKK 231 >gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5] gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens Hrk 5] Length = 257 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 16/249 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 AK + V+P +NIG +AR+M NF L +L LV PR ++R + +A ++++ Sbjct: 13 AKEVSVAFVEPLYEQNIGYIARSMKNFCLAKLYLVKPRCSV-GLESRRYAMHAADIVENA 71 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E + + TT + ++P E A + E S ++ GRE W Sbjct: 72 VIVGSLGELVGMHDLVACTTGVKGKPPLRRYVSPGEMASLFAESTGSKL---VVIGREDW 128 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+ EE+++ + +++ NP +PSLN S A ++ +E + +V++ + Sbjct: 129 GLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYELF-----NKYHSVQQSLERPPRE 183 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS----TL 246 E+ +FL +L GY + +++L + + + ++ +L G+V T+ Sbjct: 184 EVEAFLKHLGDLTTLLGY--DETRSERLLLSIKRLLAETRFSKTDLRILFGLVRDSLETI 241 Query: 247 DKFSRQSSR 255 + R+S+R Sbjct: 242 KRTHRESAR 250 >gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 228 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 18/236 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P ENIG ARAM TQLR+V+ + R + + +ID++ VF Sbjct: 4 TIILVAPARAENIGAAARAMKTMGFTQLRIVDS-EAHLEPATRWVAHGSGDIIDNINVFP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L +A+ D+ F ATTAR+R F P E +L E+ ++ ++FGRE GLTNE Sbjct: 63 TLADALHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGREDSGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193 E+AL++ + P+ +PSLN+ QAV++ ++ + + + E A + +L Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNVEVTDELQLQALRARVL 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248 L L ++ K+ D L R L + + +L + ++K Sbjct: 183 RLLATL-NVSDDI----------KLTDWLQ---QRMGLLGQRDTAMLHRFLHDIEK 224 >gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146] gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri 93-146] Length = 238 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 14/232 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ R AR + A ++D F Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSRADG-ESAARWVAHGAGDILDGACHFDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F A+TAR+R F P+E VL E+ N ++FGRE GLTN+E Sbjct: 64 LAQALEDIDFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-GELLSF 195 +AL + + P+ +PSLN+ QAV++ ++ SS V+ PA + +L + Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQL------SSLMQVQAALAPAAQGDQLTAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + L G + + + + R + +L ++ ++ Sbjct: 178 RTRADRLLTTLGVDGDTKLSDWLDQRIGLLAQR------DTAMLHRLLHDIE 223 >gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 12/233 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GLTNE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L G + + L L + + +L ++ ++K Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224 >gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS 92-3] Length = 228 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 12/233 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L G + + L L + + +L ++ ++K Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224 >gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda ATCC 23685] Length = 238 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D+ F+ Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSQAD-REPAARWVAHGAGDILDNACHFAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+AD+ F A+TAR+R F P E +L E+ + ++FGRE GLTN+E Sbjct: 64 LEQALADVEFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LLSF 195 +AL + + P+ +PSLN+ QAV++ ++ SS V PA +GE L + Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQL------SSLMQVHAVAEPAAQGEQLAAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 LE G + + L + R + +L ++ ++ Sbjct: 178 RARTTRLLETLGVEDDSKLSDWLAQRLGLLAQR------DTAMLHRLLHDIESALN---- 227 Query: 256 RNNVLLQKTEKS 267 N + +K EK Sbjct: 228 -NGLAAKKHEKG 238 >gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f. nagariensis] Length = 463 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 36/265 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------------ 51 VI+LV+P+ GENIG AR M NF L +LRLV P G Sbjct: 152 VIVLVEPKRGENIGAAARGMKNFGLRELRLVRPMAGAGGGGGGGGGGGGGGGGDRAVDAG 211 Query: 52 -------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104 WP EKAR+ +A A V+DS +V+ L A+ADL ++YA + R R K Sbjct: 212 GGSGGWYWPDEKARAVAARAVDVVDSAKVYDTLDAALADLQYVYAASGRPRAQDKLAKDV 271 Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 V + +G +G++FGRE GL NEE+ +NAI++ +P F SLN+ QAVL++ Sbjct: 272 VLLRQVQDSLPPAGTRIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAVLIV 331 Query: 165 VWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224 +E + + A++ E+ LD L +L+ R +F + + + Sbjct: 332 CYELFRA---PRRPGLGAKRDRASRREVEGMLDRLFRALDARAFFN-QYNRDVLQYAIRG 387 Query: 225 IFIRPE-LMREEVFLLRGIVSTLDK 248 F R L R++V +R ++ L + Sbjct: 388 FFDRVNPLSRQDVAAVRQVLKALQR 412 >gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895] Length = 228 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 18/237 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P ENIG ARAM +R+V+ + R + + +ID++ V+ Sbjct: 3 VTIILVAPARAENIGAAARAMKTMGFGDMRIVDSQ-AHLEPATRWVAHGSADIIDNISVY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAEALHDVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + A + + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQLAKQTEVTDAPQLQALRTRV 181 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM-REEVFLLRGIVSTLDK 248 L L+++ ++ K+ D L R L + + +L ++ ++K Sbjct: 182 SQLLATLDVA-DDI----------KLADWLQ---QRLGLSGQRDTAMLHRLLHDIEK 224 >gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta smaragdinae DSM 11293] Length = 235 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 17/242 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I+LV+PQ NIG V RAM N + L +V RD + + + + +A + + Sbjct: 1 MGNLRIVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARD-YDENRVLTLALHARDIWHNA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F ++ A+ D F T R K L P+E A ++ V +FGRE Sbjct: 60 LRFPDIDAALEDCVFSAGITRRRGKFRKYFSLLPEEFAKRIS--AIESGTVAAVFGREAD 117 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL ++E+A + + P +P FPSLN+S AV ++ +E SS P + Sbjct: 118 GLRDDELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRTPSSVTF-----QPIKRR 172 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 ++ + + + G+F+ EK + + + I R L +E ++K Sbjct: 173 DVDKVAATIVDNFDAIGFFKQDEKDE-VRIFFHDILTRAALSAKE-------AKRIEKMF 224 Query: 251 RQ 252 R+ Sbjct: 225 RK 226 >gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 12/233 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM +LR+V+ + + AR + + ++D + + Sbjct: 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAEALRDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L G + + L L + + +L ++ ++K Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224 >gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27] Length = 283 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 10/251 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++L + Q NIG V RAM N + LRL+ P P+ + + + +++ + Sbjct: 6 LNAVTVVLYESQDSINIGGVVRAMKNMGVRDLRLIRPCPYDPN-RVEQVAHDTRDIVERI 64 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + F + EA+AD ++ + R + P+ AA+ L E G V I+FGRE G Sbjct: 65 QHFETIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLEFAQQG-RVAIMFGREDHG 123 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATK 189 L NE + SNAI + P F SLN++QA LL ++E + ++++ ++ +K Sbjct: 124 LPNEALDRSNAICTIPTTEHF-SLNVAQACLLALYELHMLAGDATKRLPPPRHAAGSPSK 182 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG----IVST 245 ++ + +L YF ++ M+ S+ R + E+ L+R ++ T Sbjct: 183 DDVERTFADMRNALTAIRYFG-TRNEELMMRTFRSLVFRANPDQRELLLIRTASIEVLRT 241 Query: 246 LDKFSRQSSRR 256 +++ +RQ+ +R Sbjct: 242 IERETRQAVQR 252 >gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 234 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 1/163 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VIIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E+AL++ + P+ +PSLN+ QAV++ ++ + E Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164 >gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda FL6-60] Length = 235 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 3/185 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P EN+G ARAM T LR+V+ + AR + A ++D R F Sbjct: 5 IVLVAPARAENVGAAARAMKTMGFTSLRIVDSKADG-EPAARWVAHGAGDILDGARHFDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+AD+ F A+TAR+R F P+E VL E+ + ++FGRE GLTN+E Sbjct: 64 LAQALADVDFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194 +AL + + P+ +PSLN+ QAV++ ++ + + + + A + Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQLSSLMQVQAAQAPAAQGEQLAALRARTDR 183 Query: 195 FLDYL 199 L L Sbjct: 184 LLTTL 188 >gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 234 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E+AL++ + P+ +PSLN+ QAV++ ++ + E Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164 >gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107] Length = 256 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 14/253 (5%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ + Sbjct: 1 MNNVVVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGR 127 +++ L AI D A+ R + + P EA L + Q + ++FGR Sbjct: 61 KLYPTLLSAIGDCRRSVASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGR 120 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP- 186 E GL+N+E+ L +++ +PSLN+S +V +++ + S + Sbjct: 121 EDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLARLSTNLHTPPTTDPTALQ 180 Query: 187 --------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238 A L + LD L E G+ + + + + R + EEV L Sbjct: 181 APRATPDPAAAPALAALLDDATDLLLEAGFLLQHTAHAR-MGKVRDLLQRATIRTEEVAL 239 Query: 239 LRGIVSTLDKFSR 251 +RG+V L R Sbjct: 240 IRGMVRQLRWAIR 252 >gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC 9905] Length = 228 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV ENIG ARAM ++LR+V+ + R VID+++VF Sbjct: 3 ITIILVALARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAIRWVVHGFGDVIDNIKVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E++ D+ F ATTAR+R + P E +L E+ + ++FGRE GLTN Sbjct: 62 PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+AL++ + P+ +PSLN+ QAV++ ++ + + + +T A + +L + Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + L ++ + L L + + +L ++ ++K Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224 >gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii] gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 102/154 (66%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P +ILV+PQ GENIG ARAM NF L LR+V PRDGWP+ A ++S++A ++++ R++ Sbjct: 1 PAVILVEPQFGENIGAAARAMKNFGLHDLRVVRPRDGWPNPLAVATSSHAADLLEAARLY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ AIADL +YA TAR R K + K+ + G++FGRE GLTN Sbjct: 61 DSVEAAIADLDRVYAATARTRFMHKPFVTSKQGPADATDVAARMPRAGLMFGRESSGLTN 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 EE+AL+N +++ NP++P LN++QA++ + +E Sbjct: 121 EEVALANKVLTIEANPVYPVLNLAQAIVCVSYEL 154 >gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter sp. 1501(2011)] Length = 300 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 2/183 (1%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + I++V+ L NIG ARAM LT L +V+PR E + + +A A Sbjct: 20 ALNQRLQNIRIVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRHPI-DEDSVAHAAGAKS 78 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V+D+ V +L++A+AD H ++A ++R R+ + V+ P AA ++ R V ++FG Sbjct: 79 VLDNCTVVDSLEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFG 138 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 RE GLTN+E+A+++ I NP +P LN++ A+ ++ + + + N P Sbjct: 139 REDRGLTNQELAMADYHIQIDANPDYPVLNVASAIQVISSFFYSRFLQDAHSKLTVSN-P 197 Query: 187 ATK 189 AT Sbjct: 198 ATS 200 >gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 12/244 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L+ A+ ++ V+P+ NIG +ARAM NF L L L+NP + ++A + +A Sbjct: 2 EALKMLAENISVVFVEPETPGNIGFLARAMKNFGLRTLILINPCE--LEDEAYYQAMHAR 59 Query: 66 CVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +++ ++ +L E I L F+ TT ++ P L + I I Sbjct: 60 DIVEGALIYRDLSEMIDSLEPDFLVGTTGVPGGSYNVDRIP-LRPSQLADAIRPSSGTFI 118 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FGRE GL+NEEI L + ++S P + +P +NI+ A ++ +E + + E Sbjct: 119 LFGREGDGLSNEEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYELFRDR-----EFRCEG 173 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 A+ E L+ ++ L P K++ +I R + E L+G++ Sbjct: 174 LEEASALEKSLLLEEMDDILSLID--IPEHKQRVASRVFRNITGRAFITAREAHTLKGVL 231 Query: 244 STLD 247 + Sbjct: 232 RRIK 235 >gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii DS2] Length = 275 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 108/237 (45%), Gaps = 6/237 (2%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKE 79 +P+ N+G +ARAM NF + LRLV+P P +A + +A V+ + + +E Sbjct: 37 EPETPGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDVLPNATETTL-EE 95 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIA 138 + + H + T + ++ + V P + + + + + S + ++FGRE GL NEE+A Sbjct: 96 VVEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELA 155 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 + + + P + +P LN+ QA L+++E ++ ++ + A++ E+ + Sbjct: 156 MLDEVCCIPADDRYPVLNLGQAATLLMYELRRFTVEETQLP-DVERERASEAEIEVVYRF 214 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 + L+ Y K+ K + + R E L G+ + R R Sbjct: 215 FDELLDAVDY--REHKRTKTSRMMRRLLGRAHPTEREAATLTGVFRRAAEAVRDPDR 269 >gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 228 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19] gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19] Length = 234 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 11/243 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR M NF + +L LV PR E A + + +A ++++ + Sbjct: 3 VRVVLVEPKYDGNIGHVARVMKNFGVKELFLVRPRSE-LGEVAIARAMHALDLLENAVIV 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L+EAI D+ ATTA + P + E + + ++FG E GL Sbjct: 62 NTLEEAIEDVEAAIATTAVLAST--PARNP-MMPWEVREAFSDYEKIAVVFGPEDRGLRT 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E+ L +A + P + + S+N+S +V ++++E + V + ATK E Sbjct: 119 WEVELCDATLHIPTSEEYRSMNLSHSVAVVLYELKKMEYVP-----ERYGRAATKREKEV 173 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + L+ ++ + +++ + R +E+ L I + Sbjct: 174 LVKSLDDLMKALNF--DSTRRENVCTTFRRFLARARCTDKEIKALLWIFEKAKRRVLGVK 231 Query: 255 RRN 257 RRN Sbjct: 232 RRN 234 >gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075] Length = 251 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 3/251 (1%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + + ++LV P++ ENIG ARA+ N L LRLV+P D ++A Sbjct: 4 ALLDLLQNVFVVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQGQR 63 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V++S+ V +L A+AD ATTAR +++ P++AA + G V ++FG Sbjct: 64 VLESMTVSDSLAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRG-PVAVVFG 122 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E GL++E++ L I+ P + SLN++Q+V+++ +E + + ++ TP Sbjct: 123 PEDRGLSHEQVDLCRLSINIPTSQA-SSLNLAQSVIVLAYELRLAAENGAGLERRKLPTP 181 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 A GE+ + L +L+ + G+ + L + R + +EV RG+ + Sbjct: 182 APLGEIQALLAHLQEAFVNIGHLD-ANNPAHFMRLLKAPLERAAMTSKEVRAWRGVARQV 240 Query: 247 DKFSRQSSRRN 257 + + +R++ Sbjct: 241 NWLHGRLARKD 251 >gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 228 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 228 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] Length = 253 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 14/249 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV+P NIG VAR NFN+ +LRLV PR SE + + + ++ S +++ Sbjct: 2 VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLYP 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----IFSGQNVGIIFGRERWG 131 L AI D A+ R + + +P +A L R + ++FGRE G Sbjct: 62 TLLSAIGDCRRSVASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGREDRG 121 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPA--- 187 L+N+E+ L +++ +PSLN+S +V +++ + S + PA Sbjct: 122 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMARLSTKLHIPSTADPSAKPAQLP 181 Query: 188 -----TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242 L + LD L E G+ + + + + R + EEV L+RG+ Sbjct: 182 SPDPAAAPALTALLDDATDLLLEAGFLLQHTAHAR-MGKVRDLLQRATIRTEEVALIRGM 240 Query: 243 VSTLDKFSR 251 V L R Sbjct: 241 VRQLRWAIR 249 >gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 252 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 10/257 (3%) Query: 1 MTPYAPQLQ-----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M P+ P L N ++LV + NIG ARAM NF ++L +V P D E Sbjct: 1 MPPFGPALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYDVAFRE 60 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 S+ A ++ F ++ A+AD + TT+ + + E L + Sbjct: 61 A--RSAVGAAPLLQKAEEFPSVAAAVADCRLVVGTTSVGHRELQHPIRRLEYGARLMLKG 118 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V ++FG E++GL+NE+++ + ++ P S+N+ QAV L ++E + + Sbjct: 119 LPAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELARDPKAA 178 Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 E+ A GEL L L GY PV + + + R E+ + Sbjct: 179 LAS--PEKIRSANAGELEQITTRLLEVLNRSGYVNPVTSI-STDEKVRRLVRRLEIPGRD 235 Query: 236 VFLLRGIVSTLDKFSRQ 252 ++ G++ + Sbjct: 236 AKVILGMLRQILWKLEN 252 >gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 228 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae ATCC 29220] Length = 242 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 18/236 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P ENIG ARAM TQLR+V+ + R + + +ID++ VF Sbjct: 18 TIILVAPARAENIGAAARAMKTMGFTQLRIVDS-EAHLEPATRWVAHGSGDIIDNINVFP 76 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNE Sbjct: 77 TLAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNE 136 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193 E+AL++ + + +PSLN+ QAV++ ++ + + E A + +L Sbjct: 137 ELALADVLTGVTMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNIDVTDELQLQALRARVL 196 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248 L L ++ K+ D L R L + + +L + ++K Sbjct: 197 RLLATL-NVSDDI----------KLTDWLQ---QRMGLLGQRDTAMLHRFLHDIEK 238 >gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469] gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469] Length = 228 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 16/235 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P ENIG ARAM ++R+V+ + R + + +ID++ VFS Sbjct: 4 TIILVAPARAENIGAAARAMKTMGFHEMRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVFS 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+ D+ F ATTAR+R F P E +L E+ +V ++FGRE GLTNE Sbjct: 63 SLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193 E+AL++ + P+ +PSLN+ QAV++ ++ + + + E A + ++ Sbjct: 123 ELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRVM 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L L+++ ++ K+++ L L + + +L ++ ++K Sbjct: 183 RLLSTLDVA-DDV----------KLVEWLQQRLG--LLGQRDTAMLHRLLHDIEK 224 >gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 228 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E+AL++ + P+ +PSLN+ QAV++ ++ + E Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164 >gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 228 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155 >gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 228 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] Length = 236 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 8/210 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ EN+GMVARAM N +L LV P S AR + +A+ +++ RV Sbjct: 2 VRVILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVC 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+ + A T R+ L E L E F+G++V ++FGRER GLT+ Sbjct: 62 ETLAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGRDVALVFGRERTGLTS 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ + I++ P + PSLN++QAV+++++E M S +S +E P ++ Sbjct: 120 EEVQACDLILTIPSSGACPSLNLAQAVMVVLYELMRASFLSLAPRREEDLRPYLDEAVVR 179 Query: 195 FLDYLEISLEERGYFR--PVEKKKKMLDDL 222 LE+ GY+R P EK + + Sbjct: 180 ----AREVLEKLGYYRNIPEEKVAFAVRKV 205 >gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 228 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 171 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 7/168 (4%) Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R+ +L P+ + + E+ G V ++FGRE GLTNEE+ + + P +P F S Sbjct: 1 RSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSS 60 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQN------TPATKGELLSFLDYLEISLEERGY 208 LN++ AV ++ +E + SE+ + AT E+ F +LE +L + G+ Sbjct: 61 LNLAAAVQVLSYEVRMAWLALSEQGEASRPASAHSAELATMDEMEGFYGHLESTLVDIGF 120 Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 P EK + ++ L +F R E+ R E+ +LRG+++ K +R + Sbjct: 121 LDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVARGEPYK 167 >gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola At-22] Length = 228 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM LR+V+ + + AR + + ++D V + Sbjct: 4 TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L G + + + L + + +L ++ ++K Sbjct: 178 RIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEK 224 >gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227] Length = 228 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 16/235 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P ENIG ARAM ++R+V+ + R + + +ID++ VFS Sbjct: 4 TIILVAPARAENIGAAARAMKTMGFHEMRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVFS 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EA+ D+ F ATTAR+R F P E +L E+ + ++FGRE GLTNE Sbjct: 63 SLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDSGLTNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193 E+AL++ + P+ +PSLN+ QAV++ ++ + + + E A + ++ Sbjct: 123 ELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRVM 182 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L L+++ ++ K+++ L L + + +L ++ ++K Sbjct: 183 RLLSTLDVA-DDV----------KLVEWLQQRLG--LLGQRDTAMLHRLLHDIEK 224 >gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 228 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155 >gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae 342] gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55] Length = 228 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IILV P EN+G ARAM LR+V+ + + AR + + ++D V + Sbjct: 4 TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ D+ F ATTAR+R F P++ +L E+ + ++FGRE GL+NE Sbjct: 63 TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL++ + P+ +PSLN+ Q+V++ ++ S + A +L + Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E L G + + + L + + +L ++ ++K Sbjct: 178 RIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEK 224 >gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 228 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 236 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 7/215 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ EN+GMVARAM N +L LV P S A+ + +A+ +++ RV Sbjct: 2 VRVILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVC 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L EA+ + A T R+ L E L E F+G+ V ++FGRER GLT+ Sbjct: 62 ETLAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGREVALVFGRERTGLTS 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE+ + I++ P + PSLN++QAV+++++E M S +S N +E P + ++ Sbjct: 120 EEVQACDLILTIPSSGSCPSLNLAQAVMVVLYELMRASFLSLAPNREEDLRPYLEEAVVR 179 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 LE+ GY+R + ++K+ + + R Sbjct: 180 ----AREVLEKLGYYRNI-PEEKVAFSVRKVIARM 209 >gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 3/235 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +L+ P+ EN+G ARAM N L++ V P AR + +A+ ++D VR Sbjct: 4 PIRFVLMRPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRR 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L+ A+AD ++ T++R + +L P+ L R G V I+FG ER GLT Sbjct: 63 EDSLEAAVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQG-PVAIVFGDERSGLT 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N E+ + + + P +P PS+N++QAVLL +E S+ ++ A+ EL Sbjct: 121 NAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELA 180 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + LE L+ G+ + L D+++ R L E L + TL K Sbjct: 181 RVEETLETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 235 >gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 168 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 106/165 (64%), Gaps = 5/165 (3%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P+IILV PQ+G NIG ARAM NF L +LR+V PRDGWP+E+ARS++ A +ID ++ Sbjct: 2 NPIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F +L+++I DL ++YATT R K + + + + + VGI+FGRE GL+ Sbjct: 62 FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 NEEIA + II+ F SLNI+QAV+++ +E + NS ++ Sbjct: 118 NEEIAFATKIITINTT-EFSSLNIAQAVIIICYELLRNSTPREDR 161 >gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7] gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C7] Length = 234 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 17/242 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V E+A + +A ++++ + +S Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-NSEILDEEAYIRAVHAKNILNNTKFYS 62 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI D+ F ATT +RN + + P+E A E ++GI+FGRE GL Sbjct: 63 TLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVEL---NGSLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191 NE++ L + ++S P + +P +N+S AV ++++E S+ S + A+ E Sbjct: 120 KNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFESL-SEDSPYDLNMKNASIDEK 178 Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 LL F + ++ P +K I R + +E L G+ DK+ Sbjct: 179 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 232 Query: 250 SR 251 + Sbjct: 233 PK 234 >gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 228 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + + D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADVLHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +A I+L+ P+ EN+G VARAM NF L + AR + +A+ ++D Sbjct: 6 PAAPPVRIVLLRPRNPENLGAVARAMKNFGLADWAI-AELGTHDFATARRVAVHAEDLLD 64 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R+ L EA+AD ++ T++R R K L+P E A ER +G ++FG ER Sbjct: 65 RPRLVRTLDEAVADCAWVVGTSSR-RVRGKRRLSPAEVAREAMERAPAG-RTALVFGDER 122 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 GL N+E+ + + + P + PS+N++QAVLL +E ++ + E AT Sbjct: 123 SGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRRAALATREPAPAAAG--ATD 180 Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 GEL + L +L E G+ E + + DL S R L R EV L + T+ + Sbjct: 181 GELRGLEEMLRAALRETGFLAGPE--RHAVRDLLSPLRRARLTRSEVRLWTAALRTMGR 237 >gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 228 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGCTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum lacusprofundi ATCC 49239] Length = 290 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 6/222 (2%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKEAIAD 83 N+G +ARAM NF L+ L+LV+P + +A + +A V+ + E +A+ Sbjct: 49 PGNVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEV-TFDEIVAN 107 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNA 142 H + T ++ P + + L E + + I+FGRE GL NEE++ + Sbjct: 108 YHTVGTTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLDE 167 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 + S P + +P LN+ QA ++++E + ++ ++ T A + ++ F ++ Sbjct: 168 VCSIPADDDYPVLNLGQAATVLLYELRDLTVDETQLP-DTAVTRAPEPDVERFHEFFGDF 226 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244 LE G + + K + + R E+ L G Sbjct: 227 LEATG--QREHHRDKNALLVRRLLGRAHPTEREIHSLLGTFR 266 >gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728] Length = 251 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++ Sbjct: 9 ENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAE 65 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + I+ + I AT++ +N K P E G + ++FGRE G Sbjct: 66 IYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDG 125 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEEI N I+ P NP +P N+S AV ++++ + + + +N++ + + Sbjct: 126 LRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY--VMFTRFNPPENIEIRAIEPDHED 183 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L + + Y P K + L + R + E F + G++ + + + Sbjct: 184 L--MLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESLQ 239 Query: 252 QS 253 + Sbjct: 240 RP 241 >gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 154 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154 >gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg] gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str. Marburg] Length = 240 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++ V+P+ N+G +ARAM NF L L L+NP ++A + +A +++ Sbjct: 9 RNIGVVFVEPETPGNVGFLARAMKNFGLQNLILINPCS--LEDEAYYQAMHARDLVEDAI 66 Query: 73 VFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ L E I +L F+ TT ++ P L I I+FGRE Sbjct: 67 IYQTLDEMIENLEPDFLVGTTGVPGGSYNVDRIP-LRPSQLASAINPSSRTFILFGREGD 125 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 GL+N E+ L + ++S P + +P +NI+ A ++ +E + E A+ Sbjct: 126 GLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYEIFKKRDFDC-----EGLEDASGV 180 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 E +D ++ L P K++ ++ R E L+G++ + Sbjct: 181 EKKLLVDEMDEILSLID--IPPHKERVASRVFRNVTGRAFRTAREDHTLKGVLRRIKNRM 238 Query: 251 RQ 252 ++ Sbjct: 239 KE 240 >gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae SCF1] Length = 228 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P ENIG ARAM T++R+V+ A+ + A +++++ ++ Sbjct: 5 IVLVSPARAENIGAAARAMKTMGFTEMRIVDS-VAHREPGAQRVAHGAGDILENITTWAT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+ D+ F ATTAR+R F P+E +L E+ Q+ ++FGRE GLTN+E Sbjct: 64 LAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSGLTNDE 123 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ + P+ +PSLN+ QAV++ ++ + + + +L + Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLSSLTQNRATAVAGG-----DENQLQALR 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L + + + + R + +L ++ ++K Sbjct: 179 LRTQALLARLQVADDHKLADWLQQRIGLLAQR------DTAMLHRLLHDIEK 224 >gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6] gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C6] Length = 234 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 17/242 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V E+A + +A ++++ + +S Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDILDEEAYIRAVHAKNILNNAKFYS 62 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI D+ F ATT +RN + + P+E A + + ++GI+FGRE GL Sbjct: 63 KLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELA---KKHLDLNGSLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191 NE++ + ++S P + +P +N+S AV ++++E S+ A+ E Sbjct: 120 KNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFESLSEDIPYDLNMKN-ASIDEK 178 Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 LL F + ++ P +K I R + +E L G+ DK+ Sbjct: 179 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 232 Query: 250 SR 251 + Sbjct: 233 PK 234 >gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 291 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + I+LV P+ NIG VAR+MWN L L ++ R P ++A + S ++++ Sbjct: 49 ENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAE 105 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + I+ + I AT++ +N K P E G + ++FGRE G Sbjct: 106 IYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDG 165 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L NEEI N I+ P NP +P N+S AV ++++ + + + +N++ + + Sbjct: 166 LRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY--VMFTRFNPPENIEIRAIEPDHED 223 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L L + + Y P K + L + R + E F + G++ + + + Sbjct: 224 L--MLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESLQ 279 Query: 252 QS 253 + Sbjct: 280 RP 281 >gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5] gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus maripaludis C5] Length = 254 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 17/242 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V E+A + +A ++++ + +S Sbjct: 24 VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDVLDEEAYIRAVHAKNILNNAKFYS 82 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI D+ F ATT +RN + + P+E A E +GI+FGRE GL Sbjct: 83 KLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVEL---NGRLGIVFGREDDGL 139 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191 NE + L + ++S P + +P +N+S AV ++++E S+ + A+ E Sbjct: 140 KNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYEIYFESLSENIPYDLNMKN-ASIDEK 198 Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 LL F + ++ P +K I R + +E L G+ DK+ Sbjct: 199 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 252 Query: 250 SR 251 + Sbjct: 253 PK 254 >gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 228 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTA +R F +P E +L E+ ++ ++FGRE GLTN Sbjct: 62 RTLADALHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3] gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae A3] Length = 246 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 15/234 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDS 70 +ILV+P+ N+G +AR M NF+ LR+V + + +++A + +A ++++ Sbjct: 4 TVILVNPKYSGNLGAIARTMMNFDTYDLRIVQNKLGEKPETILNDEAFIRAVHAKEILEN 63 Query: 71 VRVFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + L+EA D+ ++ ATT ++N + + P+E A + I N+ I+FG Sbjct: 64 AKFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELAE---KSISLKGNLAIVFG 120 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 RE GL NE++ L + ++S P +P +N+S AV ++++E SI ++ Sbjct: 121 REDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELYSISIGNAIPYDTNVKE- 179 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 A+K + L +++ KK + R + E L Sbjct: 180 ASKEDKDILLSIFNDFVDKS--LIQEHKKPICKTIFKRVISRAFVSGREANSLM 231 >gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9] Length = 237 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLK 78 G NIG ARA+ + L + N + + ++ A + ++NA + +V+V NL Sbjct: 3 QTSHGGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKVKDNLN 62 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEE 136 EA++D++ +A TAR R +F+S+ ++ A V + N+ I+ G E+ GL N Sbjct: 63 EALSDINMAFALTARARRDFESI-DVRQMATVALNHLIESKNHNIAIVMGNEQSGLDNNS 121 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPATKGELL 193 + N I+S P NP + SLN++QA+ + WE N + + +V AT G+ Sbjct: 122 LYNFNYIVSIPANPEYSSLNVAQALQITAWELRYKYINQLNNINFDVSAIKDSATIGQCD 181 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + LE GY +K ++ + + ++ +E+V + GI+ L+K Sbjct: 182 YLIKTIIEKLESSGY--DKDKLNSIVLKTKHLLRKSQISKEDVQMFLGIIKHLEK 234 >gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 228 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ VF Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+ D+ F ATTAR+R F + E +L E+ ++ ++FGRE GLTN Sbjct: 62 HTLADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGREDSGLTN 121 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155 >gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881] Length = 220 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 V +LV+P GENIG ARA+ +LRLVNP D A+ + +++ V++ + Sbjct: 3 IVFVLVEPARGENIGAAARAIKTMGFKELRLVNPGDM---RAAQWVAHHSNDVLEQAVIV 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A+AD+ A TAR+R + A ++ + S Q V I+FGRE GLT Sbjct: 60 DTLDQALADVDLSIACTARHRLQKDRYVDADRCAELVAGKGNSVQRVAIVFGREASGLTG 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+A + S P+ PSLN+ QAV++ WE + V+ + P T G Sbjct: 120 DEVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKR-----PATVQPEADPTTFGHTRQ 174 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L L +L+ +P E + +D+L + E+ L+R ++ + + Sbjct: 175 ALHQLLAALQ----IQPTENLHQWVDELLPLA-----SDRELGLVRQLLRRIKR 219 >gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 235 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 3/237 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 +G V+IL PQ NIG V RAM N +LRLV P P A + + D V+ + Sbjct: 1 MEGIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEPPPFDPDLIA-AVAHRPDPVLTRL 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + S+L +A AD+ ++ T+ R N ++ A+ L+ R V ++FG E G Sbjct: 60 TIHSDLADATADIRYLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+ EE++ + II P+NP +P+LN++QAVLL+++E + + S + + + Sbjct: 120 LSREELSRCHEIIGLPINPAYPTLNLAQAVLLILYELQQVTPPSPPPSPPAEPPA-DLAD 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+ + + + + L +I R L + + +L ++ + Sbjct: 179 YDRLFTVLDELITATQFVKSG-NGMALRRRLRAIINRAGLSQRDAAVLTALLRAAVR 234 >gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2] gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis S2] Length = 234 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 15/230 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NF++ +LR+V + ++A + +A ++++ + +S Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTPE-ILDDEAYIRAVHAKNILNNAKFYS 62 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++AI+D+ F ATT +RN + + P+E A + +GI+FGRE GL Sbjct: 63 KLEDAISDIDFTVATTGAVCGDRNVNRVPITPRELA---KKHSSISGTLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191 NE++ L + ++S P + +P LN+S AV ++++E S S + A+ E Sbjct: 120 KNEDVELCDILVSVPTSNKYPILNLSHAVSVILYEIYFESF-SKDIPYDLNMKNASVDEK 178 Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 LL F + ++ P +K I R + +E L Sbjct: 179 NALLRFFNEFVDRSKDV----PDYRKDICKTIFKRIVGRAFISGKEANSL 224 >gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 231 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 3/228 (1%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P+ EN+G ARAM N L++ V P AR + +A+ ++D VR +L+ A Sbjct: 2 RPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRREDSLEAA 60 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +AD ++ T++R + +L P+ L R G V I+FG ER GLTN E+ Sbjct: 61 VADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQG-PVAIVFGDERSGLTNAEVERC 118 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 + + + P +P PS+N++QAVLL +E S+ ++ A+ EL + LE Sbjct: 119 HDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARVEETLE 178 Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L+ G+ + L D+++ R L E L + TL K Sbjct: 179 TLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 226 >gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB] gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus vannielii SB] Length = 234 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ILV+P+ G N+G +AR M NFN+++LR+V D ++ A + +A ++ + + + Sbjct: 4 VVILVNPKYGGNLGAIARNMMNFNVSELRIVGNSDILDND-AYIRAVHAKDILKNAKFYK 62 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A++D+ ATT +RN + + P+E A N++ G +GI+FGRE GL Sbjct: 63 SLSNAVSDIDVTVATTGAVSGDRNIKRIPITPRELAK--NQKENEG-TLGIVFGREDDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 NE++ L + ++S P + +P +N+S AV ++++E S VSS+ + A+K E Sbjct: 120 KNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIYYES-VSSDIPYNLRMKNASKIEK 178 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 L + ++ P +K+ I R + +E L Sbjct: 179 EMLLRFFNEFVDISNAV-PEYRKEICKTIFKRIVGRAFISGKEANSL 224 >gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2] gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2] gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2] Length = 237 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 26/241 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR NF + +L +VNPR +A SA +++ ++ Sbjct: 2 IRVVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI--SEAFRFSAGGREILEKAKIV 59 Query: 75 SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +AI D+ AT++ N + + + P E ++ G+ + +IFGRE G Sbjct: 60 NTFDKAINDVDIKIATSSIADNNGDILRKSIRPWEILPLI-----QGKKIALIFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT EEI + ++ P NP +P LN+S AV ++++E +N + + + + Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLTNPQTSTISDQ-SIKL 173 Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236 + + + L L+ Y + E+ + ++ L ++ R +E+ Sbjct: 174 IDKYTEILYKLLKRSDDDYKMYIALKRAIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233 Query: 237 F 237 Sbjct: 234 N 234 >gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax borkumensis SK2] Length = 223 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 10/218 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 V ILV+P GENIG ARA+ +QLRLVNP D A + +++ V++ + Sbjct: 3 IVFILVEPARGENIGAAARAIKTMGFSQLRLVNPGDMT---AAHWVAHHSNDVLEQAMIV 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L +A+ D+ TAR+R + A ++ + S Q V I+FGRE GLT Sbjct: 60 DSLAQALVDVDLSIGCTARHRLQKDRYVDADHCAALVAGKGNSVQRVAIVFGREASGLTG 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATKGE 191 +E+ L + S P+ PSLN++QAV++ WE + I + A + Sbjct: 120 DELGLCDLASSIPLAQQQPSLNLAQAVMIYAWELRKQPAVKITEPDPATFSHTRQAVHQQ 179 Query: 192 LLSFL----DYLEISLEERGYFRPVEKKKKMLDDLYSI 225 L S + L ++E + + L + Sbjct: 180 LASLHIQPNENLHQWVDELLPLANDRELGLVRQLLRRL 217 >gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091] gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091] Length = 238 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 17/235 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+P+ NIG +AR M NF L +L L+NP A + +A ++ ++ L Sbjct: 6 VFVEPKTSGNIGFLARTMKNFGLKKLVLINPCKLEND--AYYQAMHARELVQDAMIYDTL 63 Query: 78 KEAIAD--LHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E I D + I TT ++ + + P E L + + N+ ++FGRE GL Sbjct: 64 EEFIEDKKITSIVGTTGTAGGSYNIKRIPITPDE----LGKTMHVNGNIALLFGREGDGL 119 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 N+EI + +++ P + +P +NI+ A ++ +E +N ++ + K L Sbjct: 120 NNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKNKKSYPIDDMDISSYD-DKKVL 178 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 + + + L+ P K+K++ + I R + E LRG + ++ Sbjct: 179 TNLTNEIISKLD-----YPEHKEKQVKIIVKRIIGRAFIAGRESQTLRGTLKRIN 228 >gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] Length = 294 Score = 191 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNNLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P NP +P LN++ A+ + Sbjct: 125 LDHMNQSADDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMTKEEYSLPIHIRSDWDEPAITQAQSASLERAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ ++K Sbjct: 245 ALMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINK 291 >gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 293 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 40/275 (14%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + + N +++V+ L NIG ARAM L++L +V+P+ + + S Sbjct: 9 LATAVSNVSNYLSCVQVVMVNTTLPANIGSAARAMHTMGLSRLTVVDPK-LPIDDTSVSH 67 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--------- 111 +A ++ S + L+ AIAD ++A ++R+R+ + V+ P +AA ++ Sbjct: 68 AAGGSDLLSSAIIAPTLESAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQST 127 Query: 112 ---NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--- 165 + I + N+ I+FGRE GLTNEE+A ++ + NP +P LN++ AV ++ Sbjct: 128 VNGQDGINTAPNIAILFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAVQVIASFI 187 Query: 166 W-----------------------ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 + E +E ++++ + T+ +L + Sbjct: 188 YAYAQTHIQADSEVNDIAQVTDNLETLEQGMLNTYVRQQWDEPAITQQQLQLLTERTTAL 247 Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 + +R E K + L + R +L ++E Sbjct: 248 MVQRK-LADSENLKSLPSRLSRLGSRIQLDQKEYQ 281 >gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas acidaminovorans] Length = 278 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 22/230 (9%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P G N+G +AR M NF + LR+V P + + +++ ++++V ++ Sbjct: 10 IAVILVEPIYGGNVGAIARIMHNFCFSDLRIVG---KVPEKNDFYLAMHSEEILENVNIY 66 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S L++AI L + A + R N P + A + N+G++FGRE +GLT+ Sbjct: 67 STLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYV--HSLPDSNIGLVFGRETYGLTD 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E L F NP FPSLN++QAV L +WE +K K N+ A+ EL Sbjct: 125 SEAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNS-ASGKELDE 183 Query: 195 FLDYLEISLEERGYFRPVE---------------KKKK-MLDDLYSIFIR 228 +Y+ + + G+F+ E K ML L +F R Sbjct: 184 IRNYILEVMRQCGFFQRRETINWDTFLAKMLAQLNPDKNMLYRLRQMFNR 233 >gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica DSM 9799] Length = 226 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 15/238 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ILV P GEN+G ARAM ++LR+V D SE+A + + +++ Sbjct: 1 MAELIFILVSPARGENVGAAARAMKTMGFSRLRVVGS-DAHKSEQASWVAHGSGTILEEA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F+ L EA+AD+ ATTAR R + + + P EAA + S V ++FG E G Sbjct: 60 ESFATLAEALADVDLSLATTARRRGDKRRLHTPAEAAQQVRALGNSVNTVAVVFGCEESG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+NE++AL + + + P+ +PSLN+ QA++L +E + + E+ A G+ Sbjct: 120 LSNEDLALVDLLTTIPLVNPYPSLNLGQAIMLYAYEFSQAEL--------EREACADAGQ 171 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249 ++ + L++ G ++ D L L + +V +L ++ ++K Sbjct: 172 FVALKQRSQALLDKLGVAEDEPLRRWAGDSL------GTLSQRDVAMLHLLIGDIEKA 223 >gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99] gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99] Length = 229 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 6/192 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V +LV+P N+G ARA+ QL LVN + ++A + A ++ V Sbjct: 4 VFVLVEPSRPANVGAAARAIKTMGFEQLILVNS-NLHLDKEAHWLAHGATDILAQTLVVD 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + A + ATTAR R + L P E + +++ S + + ++FGRE GL+N Sbjct: 63 SVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRESSGLSNS 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+ L + P+ +PSLN++QAV++ + ++ +K + A +G+L + Sbjct: 123 ELELCDLFSYVPLINDYPSLNLAQAVMVYSY-----ALSEVNNRLKHKRVDAQEGQLQAL 177 Query: 196 LDYLEISLEERG 207 + L++ Sbjct: 178 KKRTKTLLQQLD 189 >gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus REY15A] gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus HVE10/4] Length = 237 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59 Query: 75 SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ EAI D+ AT++ N + + + P E ++ G+ V ++FGRE G Sbjct: 60 NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT EEI + ++ P NP +P LN+S AV ++++E +N + + + + Sbjct: 115 LTREEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173 Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236 + + + L L+ Y + E+ + ++ L ++ R +E+ Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233 Query: 237 F 237 Sbjct: 234 N 234 >gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.14.25] gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.27] gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus M.16.4] Length = 237 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59 Query: 75 SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ EAI D+ AT++ N + + + P E ++ G+ V ++FGRE G Sbjct: 60 NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT EEI + ++ P NP +P LN+S AV ++++E +N + + + + Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173 Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236 + + + L L+ Y + E+ + ++ L ++ R +E+ Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233 Query: 237 F 237 Sbjct: 234 N 234 >gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15] Length = 242 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 18/252 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P++ EN+G ARA+ +L LVN D +A + +D ++D+ R+F Sbjct: 4 AFVLVEPKVPENVGAAARALCTMGFGELWLVNS-DLHTRPEAHWLAHGSDHILDNARIFP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + T+A+ R+ + P + VL + S ++FGRE GL+NE Sbjct: 63 DLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDRGLSNE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + P+ +PSLN++Q+V+L WE S ++ PA L + Sbjct: 123 ELALCDLLTGIPMKVTYPSLNLAQSVMLYAWEMSGLSDAMDIRH-----EPADDNRLGAL 177 Query: 196 LDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS--R 251 LE L E P E K + + + L P L ++ + + S +++ R Sbjct: 178 RGRLETLLPELD--TPPEGKLSQWVFERL------PLLSDRDIGFVHTLCSNIERAVDCR 229 Query: 252 QSSRRNNVLLQK 263 SR N+ Q Sbjct: 230 SQSRSNSKAEQD 241 >gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456] gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456] Length = 239 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 16/235 (6%) Query: 10 NSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 S P + ++V + N+G +AR NF + + LV+P S +AR +AN + Sbjct: 2 QSLGPPRVRLVVVGVEGEINLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVYM 61 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +D V V +L+EA+ + T+A+ + + + P+E A + R ++V ++ Sbjct: 62 LDRVIVVDSLEEALKGVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRY---ESVAVV 118 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FGRE GLT +E+A + ++ P NP +P LN+S AV ++++E ++ + K+ + Sbjct: 119 FGRESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELY-----NTRRGEKQLH 173 Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 PA L ++L E+ E+ ++ L I R + E +L Sbjct: 174 EPARGETLERIYEHLSWLAEK---LVDRERVSQVKAALKHILWRCSITGGEASML 225 >gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.S.2.15] gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.G.57.14] gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus Y.N.15.51] gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus L.D.8.5] Length = 237 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ NIG VAR NF++ +L +VNPR +A SA ++ ++ Sbjct: 2 IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59 Query: 75 SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +N EAI D+ AT++ N + + + P E ++ G+ V ++FGRE G Sbjct: 60 NNFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT EEI + ++ P NP +P LN+S AV ++++E +N + + + + Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173 Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236 + + + L L+ Y + E+ + ++ L ++ R +E+ Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233 Query: 237 F 237 Sbjct: 234 N 234 >gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis W1] Length = 228 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 24/235 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P+ N+G VAR NF + +L +V P+ S A SA + ++ + ++ Sbjct: 3 RVVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCDINS--AIKFSAKGESILRNAKIVD 60 Query: 76 NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N +A+ D+ AT++ + + + P E V+ + + +IFGRE GL Sbjct: 61 NYDDALKDVEIKIATSSIANNKGDILRKAVFPWELPSVMK-----SEKIALIFGRESVGL 115 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189 T EEI+ ++ ++ P NP +P+LN+S AV ++++E + K KE K Sbjct: 116 TREEISKADFLLFIPANPNYPTLNLSHAVGIVLYEIWKAKHEIKPKITKESIDLLDKYSK 175 Query: 190 ---------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 E L+ +L + E+ + ++ L ++ R +E Sbjct: 176 ILYDLIKRSEEDYVLYIALKRALIKG--INDEEEARTVIKFLRRLYTRILHEDKE 228 >gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304] gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 226 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 13/237 (5%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+ ++ EN+G +AR N+ + +L L R +E++ ++ANA V+++ V +L+ Sbjct: 2 LVELKIPENVGFIARVAKNYGIKRLCLYKCRV---TEESYHTAANAKDVLENAVVVEDLQ 58 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E + ++ I TT ++K + + A + G V ++FGRE +GL NEE+ Sbjct: 59 EFLQRMNLIVGTTGIPGGDYKYLRK-ELLAPEDLPSVAKG-RVAVLFGREDYGLYNEELE 116 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 + + ++ P + +P +N+S A ++++ E + V+E + AT ++ L Sbjct: 117 MCHVLVRVPTSEEYPVMNVSHAAAVILYFLREI------ERVQEDDEIATFRDIEVTLSN 170 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 L L Y P + K+ + I R + + EV L I + ++ +R Sbjct: 171 LVEMLRMVQY--PEHRIKRTVVIFRRILGRAGVKKYEVHSLNAIFRKTVSYIKRMNR 225 >gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 240 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 13/239 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV + NIG VARAM NF LRLVN P +ARS + NA V+ + R F Sbjct: 11 VAVVLVGARNPLNIGAVARAMSNFGFDDLRLVN-DYSIPLAEARS-AVNASHVLQAAREF 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ EA+AD IY TTA + P +A + E + + + I+FG E+ GL+N Sbjct: 69 GSVAEAVADCQLIYGTTAIGERKPEH---PVDALPDVLEHVGAD-KIAILFGSEKTGLSN 124 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 E ++ +++ P++ S+N+ QA ++++E + + V V PAT +L Sbjct: 125 EALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVRGNAV--PLRVSTDAAPATAEQLGL 182 Query: 195 FLDYLEISLEERGYF--RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 L +LEE Y P + L ++ R ++ +V + G R Sbjct: 183 LDAVLREALEEADYMQRFPGNASEV---RLRALTRRLQMPGADVPIWLGFFRQFLWKIR 238 >gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 257 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 11/237 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSAN 63 +Q + ++LV+PQ G NIG V RAM L++L + R + ++ R+ + + Sbjct: 1 MNVQENLDRIRMVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLALH 60 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVG 122 A V ++ +L+ A+A T R K S + P + A ++ V Sbjct: 61 AADVWENCVWEQSLESALATSILTVGATRRRGKYRKFSFINPSQLADRIS--STPAGPVS 118 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 I+FGRE GLT++E+ + +++ P + FPSLN++QAV ++ + + + V Sbjct: 119 IVFGREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAYSLYDRLKPWPVEGVPI 178 Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 A + + +LE +++ E+ L +F+R L E+ L Sbjct: 179 PQQRAEQAAWE-----ISETLERINFYKGTERV-WNHRFLRDVFVRACLSETEMQRL 229 >gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 269 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 24/267 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADC------- 66 ++L PQ +N+G AR M NF L++L +V P G P + + A Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVLARAR 65 Query: 67 --------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++D + +L+ AI ++ TT+R + L P+ A L R G Sbjct: 66 RMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSEQG 124 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + + Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPAGAA 183 Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 + + PA + + + L GY P + + +L D + R + + Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242 Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260 EV LL G + +L++ R R + Sbjct: 243 REVELLLGALRSLERALRLPPRGDGTA 269 >gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901] gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae T7901] Length = 233 Score = 184 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 27/228 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ILV+P N+G ARAM QL LV D E+A + A ++ S + + Sbjct: 4 FILVNPARPANVGAAARAMKTMGFKQLILVGS-DIHLDEEAHWVAHGAQDILTSATCYPD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L D + TTAR R + + L+P E L+++ G++FG E GL+N++ Sbjct: 63 LASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQS---GRSGLVFGCEASGLSNDQ 119 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL + P+ +PSLN+ QAV++ + ++ + + ++ ++ Sbjct: 120 LALCDLYSYIPLATPYPSLNLGQAVMVYSY-----ALSQLKSRIGLEDEAPDARQI---- 170 Query: 197 DYLEISLEERGYFRPVEKKK------KMLDDLYSIFIRPELMREEVFL 238 +L+ + P K +++ L L ++ + Sbjct: 171 QHLKNR--AAEFLAPHTDSKTEKLSEWLMESL------ARLSDRDLRM 210 >gi|301429520|dbj|BAJ12139.1| tRNA (cytidine/uridine-2'/O-)-methyltransferase- like protein [Pseudomonas putida] Length = 141 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPL---LQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEIAL 139 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEELQR 135 >gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 12/236 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV P N+G ARAM +RLV R E+A + A V+ F Sbjct: 5 FVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEVLTQAEAFDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD+ + ATTAR R ++ L P E + + V I+FG E GL+NE+ Sbjct: 64 LEEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKPSLD-KVAIVFGCEESGLSNEQ 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +A + I P+ +PSLN+ QA++L +E + ++ + + E A G++ Sbjct: 123 LAQVDLISYLPLKVSYPSLNLGQAIMLYAYEL--SQLLDEPEVLAENVDNA--GQVRVLK 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 L + G + + + ++D + P L + ++ +L + L + + Sbjct: 179 SKTAEILGDLGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLARKLGK 228 >gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 269 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 24/267 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADC------- 66 ++L PQ +N+G AR M NF L++L +V P G P + + A Sbjct: 6 IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVLARAR 65 Query: 67 --------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++D + +L+ AI ++ TT+R + L P+ A L R G Sbjct: 66 RMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSADG 124 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + V ++FG ER GL++ E+ L A+ + P + S+N++QAV ++ +E + Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPPGAA 183 Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 + + PA + + + L GY P + + +L D + R + + Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242 Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260 EV LL G + +LD+ R R + Sbjct: 243 REVELLLGALRSLDRVLRLPPRGDGTA 269 >gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1] gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus marinus F1] Length = 231 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 12/237 (5%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV + N+G +AR NF + +L LV P E+A +A A + + Sbjct: 3 VRVVLVGIEGSVNLGFIARTCVNFGVDELYLVKPAADL--EEALRYAAKASDYLKKAIIV 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L +AI D+ + ATTA+ + V + + I+FGRE GLT Sbjct: 61 DDLVDAIKDVDLVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRVNRLAILFGRESTGLTR 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +E+ ++ +++ P NP +P LN+SQAV + +WE V +E A + E+ Sbjct: 121 KELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIRGVRAENIPPS----AGRDEIEF 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247 L + ++ EK ++++ I R + + E L LR ++ L+ Sbjct: 177 ILKLIHDISKKV--LVKDEKVSRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGKLE 231 >gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 251 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 23/259 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P+ N+G V RAM N + +LR+V + + E+ R + +A + + F Sbjct: 6 ICIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAEFF 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +A AD TT R K++ L P+E A + FG ER GLT Sbjct: 66 ETITQATADCPLSAGTTRRKGKKRKNMLLLPEEFARQAAAVPGAAVV----FGNERTGLT 121 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 +EE+A ++ P + F SLN+S AV ++ + + + TP L Sbjct: 122 DEELAECTVGVTIPSHESFASLNLSHAVQIICYTLFRAA-----RTRSPGYTPVPLDRLD 176 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDL-YSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + + + L + G+F + ++ SI R L E ++K + Sbjct: 177 AAVGTIADDLRKIGFFSVTGRAD--MERFWRSILARAALSEGE-------CRYIEKIFDK 227 Query: 253 SSR---RNNVLLQKTEKSE 268 ++ +N +K+E Sbjct: 228 AAGLASKNGASEPADQKAE 246 >gi|301429526|dbj|BAJ12142.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein [Pseudomonas putida] Length = 135 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPL---LQKIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEIAL 139 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEELQR 135 >gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 239 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 3/242 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 ++IL P+ NIG V RAM N LRLV+P + + + D V+ ++ Sbjct: 1 MNDIIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDP-CPFDPATISAVAHRPDPVLANL 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V ++L EAIAD+ ++ T+ R ++ A +R S V I+FG E G Sbjct: 60 TVHAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNG 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L+ +E+ L I+ P+ +P LN++QAVLL+++E + PAT Sbjct: 120 LSRDELVLCQEILGLPMASDYPVLNLAQAVLLVLYEL-QQVTTPLAPPPPPGEPPATLAA 178 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 S + + + + + + L +I R +L + +L ++ + + Sbjct: 179 RESLYTAVADLISTTNFVKSGT-GQALHQRLRTIIARADLSERDAAVLTALLREVLRKLE 237 Query: 252 QS 253 + Sbjct: 238 RR 239 >gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] Length = 294 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSHIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter arcticus 273-4] Length = 298 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 39/280 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +++V+ L NIG ARAM L++L +V P+ + S +A Sbjct: 19 TVSDYLSSIQVVMVNTTLPANIGSAARAMHTMGLSRLTVVEPK-LPIDATSVSHAAGGSD 77 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----------- 115 ++ S + L+ AIAD ++A ++R+R+ + V+ P +AA ++ + I Sbjct: 78 LLSSAIIAPTLEAAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSAINERND 137 Query: 116 -FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + N+ I+FGRE GLTNEE+A ++ I NP +P LN++ AV ++ + Sbjct: 138 VNTAPNIAILFGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAVQVIASFIFAYAQT 197 Query: 175 SSEKNVKEQNTPATKGE-LLSFLDYLEISLEERGYFRPV--------------------- 212 + N + N P + L + + + + + P Sbjct: 198 HIKANSEANNNPLEVTDSLETLGQPMLNTYTRQQWDEPAITQQQLQQLTERTTALMVQHK 257 Query: 213 ----EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 E K + L + R +L ++E L+ +++ L K Sbjct: 258 LADSENLKSLPSRLSRLGSRIQLDQKEYQLISALIAKLAK 297 >gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] Length = 294 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] Length = 294 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|301429516|dbj|BAJ12137.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein [Pseudomonas putida] Length = 133 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP L + ++LV+ NIG ARAM N L++L LV PR +P +A + Sbjct: 1 MCSRAPPL---LQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A +++ +V + L++A+ + + T+AR+R +L P+E + E G Sbjct: 57 ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116 Query: 121 VGIIFGRERWGLTNEEI 137 + ++FGRE GLTNEE+ Sbjct: 117 IALVFGREDSGLTNEEL 133 >gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] Length = 294 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei VT8] Length = 226 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 3/190 (1%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +LV+P++ EN+G ARA+ ++L LVN D +A + +D ++D+ R+F Sbjct: 4 AFVLVEPKVPENVGAAARALCTMGFSELWLVNS-DLHTRPEAHWLAHGSDHILDNARIFP 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + T+A+ R++ + P VL + S ++FGRE GL NE Sbjct: 63 DLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDRGLANE 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 E+AL + + FP+ +PSLN+SQAV+L WE + + + E + A+ G L Sbjct: 123 ELALCDLLTGFPMAVSYPSLNLSQAVMLYAWEL--SGLARQSNSTPEVASDASLGALRQR 180 Query: 196 LDYLEISLEE 205 L+ L +LE Sbjct: 181 LETLLPALEA 190 >gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] Length = 294 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 294 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 +D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 65 LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124 Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + I+FGRE GLTNEE++L++ I P N +P LN++ A+ + Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184 Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201 + + + + + + PA + L+ I Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 +L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291 >gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 243 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 12/243 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ILV+ ++ EN+G ARA+ T LRLV PR SEKA+ + + V+ + ++ N Sbjct: 5 FILVESEVPENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAAPIYQN 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A+ D+ F ATTAR+R ++ +E L + + Q V +FG ER GL + Sbjct: 65 LSDALHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFGGERSGLNRHD 124 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I + I + P +PSLN++QAV++ + E+++ ++ + P + Sbjct: 125 IDCCDLITTIPQGNPYPSLNLAQAVMVYSFMLSESAVHIKDQRLNRTPMPPLE------Y 178 Query: 197 DYL-EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 L SL+ E+ +K + L E+++LL I + +D+ Sbjct: 179 ANLKHSSLQLMERIGLAERYQKYVTR-----GLARLGTEDLYLLHNIRACIDRTLDHLEA 233 Query: 256 RNN 258 + Sbjct: 234 KQG 236 >gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 230 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 12/232 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV P N+G ARAM +RLV R E+A + A ++ F Sbjct: 5 FVLVAPARAPNVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ + ATTAR R ++ L P E + + S V I+FG E GL+NE+ Sbjct: 64 LPEALADMDLVIATTARQRGRYQHYLTPGEIRDQIRAKP-SLNKVAIVFGCEESGLSNEQ 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +A ++ + P+ +PSLN+ QA++L +E + ++ + V E + G++ Sbjct: 123 LAHADLLSYLPLKVSYPSLNLGQAIMLYAYE--MSQLLDEPQAVAENFD--SVGQVRVLK 178 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L E G + + + ++D + P L + ++ +L + L + Sbjct: 179 HKTAEILGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLAR 224 >gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2] gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 181 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 7/226 (3%) Query: 37 NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96 N L QL +V P D + ++++ +A ++D + + S L +A+A ++ TTAR Sbjct: 2 NMGLDQLVVVAPDDFDRTRAEKTATHSAASILDRMEICSTLSQALAPFEYVVGTTARLGG 61 Query: 97 NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 + V +P+ A+ + + V ++FG E GLTN EI +A+I+ P F SLN Sbjct: 62 Q-RLVESPRTVALRV-ATLCENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLN 118 Query: 157 ISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVE 213 ++QAV+++ +E + ++++ AT EL L + L E GY P E Sbjct: 119 LAQAVVIVCYELLVAVEHQQGLPLEKKQVVPRLATVSELEIMYQRLSLVLAEIGYVNP-E 177 Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259 L+ + R ++ E +++G++ + + +R Sbjct: 178 NPDFWLNRVRQFLSRIKIQAGETGIVKGVIDRIVAYGESRYQRGQT 223 >gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1] Length = 155 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 102/143 (71%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP + R +++ A V+D+ Sbjct: 1 MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V++ + EAIADLH + ATTAR R K V AP+EA RI G+ VG++FGRER G Sbjct: 61 TVYATVPEAIADLHHLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVG 120 Query: 132 LTNEEIALSNAIISFPVNPLFPS 154 L+N+E++L++AI++FPV FP Sbjct: 121 LSNDEVSLADAIVTFPVTEEFPV 143 >gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii B565] Length = 234 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 9/233 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV P N+G ARAM +RLV R E+A + A ++ F Sbjct: 5 FVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDT 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L EA+AD+ + ATTAR R ++ L P E + + S V I+FG E GL+NE+ Sbjct: 64 LPEALADMDLVIATTARERGRYQHYLTPGEIREQIRSKP-SLNKVAIVFGCEESGLSNEQ 122 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSF 195 +A + I P+ +PSLN+ QA++L +E + ++++ G++ Sbjct: 123 LAEVDLISYLPLKVSYPSLNLGQAIMLYAYEMSQLMDELNADGGAAVAENFDNAGQVRVL 182 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 L E G + + + ++D + P L + ++ +L + L + Sbjct: 183 KSKTAELLGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLAR 229 >gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM 12710] Length = 231 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 18/240 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV + N+G +AR NF++ +L LV P +A +A A + + Sbjct: 3 VRVVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL--GEALRYAAKARDYLKKAIIV 60 Query: 75 SNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L +AI D+ + ATTA+ + + + K+ A ++ R+ + I+FGRE G Sbjct: 61 DDLADAIRDVDLVVATTAKGYSVGDVVRQAVPLKDFADMIRGRV---NRLAILFGRESTG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 LT +E+ ++ +++ P NP +P LN+SQAV + +WE + +E PA K E Sbjct: 118 LTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIKGIRAENIPP----PAEKEE 173 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247 + L + + EK ++++ I R + + E L LR ++ L+ Sbjct: 174 IEFVLKLIHDISSKV--LVKDEKVLRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGRLE 231 >gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486] gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM 11486] Length = 232 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV + N+G+++R NF + +L LVNP ++A SA ++ V Sbjct: 2 IRVVLVGIEGAYNLGVISRTCVNFEVDELYLVNPSASI--KEALIYSAKGKSFLEKAVVV 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+ + AT+A+ + + + ++ + ++FGRE GLT Sbjct: 60 DSLDEALKGVDASVATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLALVFGRESTGLTR 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE++ ++ ++S P NP +P LN+SQAV + +WE + K +PA + E+ S Sbjct: 120 EELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWELWKIR----GKQPSNIASPAPREEIES 175 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + + EK +++ I R E +L Sbjct: 176 LIALVTNISSAI--IATPEKARRIGLVWKRILHRARPTAYEARVL 218 >gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia mirabilis ATCC 51599] Length = 324 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 104/288 (36%), Gaps = 53/288 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 +LV P L NIG RA+ + L +V PRD E A + + A +V Sbjct: 38 RFVLVSPSLSANIGSAVRALTTMGIPDLMVVAPRDAAFREDAGALALAAGAEARLAQVGS 97 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWG 131 +L A+AD A +A R P + + +GQ V +FG ER G Sbjct: 98 RPSLDAALADCQLAVAVSAEGREFGPPPAFPGPLCAEVLGMLSAGQVQRVAFVFGTERTG 157 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----------------- 174 L E+A ++ P + + SLN++QAV ++ + + Sbjct: 158 LGTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRRAVLEREAARVMTRGESASGGA 217 Query: 175 -------------------------------SSEKNVKEQNTPATKGELLSFLDYLEISL 203 + ++ A G + + + E SL Sbjct: 218 PSAELARAVDGYPTDVCGREDAASPAAGVRHDGSRGLRSGERLADLGAVEGLVRHAESSL 277 Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 G P + ++++ L +F R L EV LLRGI +D+ ++ Sbjct: 278 AALGTLDPA-RPRRLMARLRHLFGRTSLTAAEVDLLRGICRDIDRRTK 324 >gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 238 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 4/187 (2%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+P NIG ARA+ T LRLV P+ S AR+ + ++ ++++ + + Sbjct: 6 FVLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGSEHILENAPQYED 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ + A+TAR+R ++ ++ +L + V I+FG ER GL+N++ Sbjct: 66 LAGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSGLSNQD 125 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I + + + P PSLN++QAV++ + ++ + + + + Sbjct: 126 IQTCDLVTTIPQITPQPSLNLAQAVMIYSFMLSQSQTQVQIADQRLNRDSVSTEQ----Y 181 Query: 197 DYLEISL 203 +L+ +L Sbjct: 182 AHLKSAL 188 >gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 243 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 5/244 (2%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + ++L + +N+G VAR M NF ++L L P E A + +D V+ Sbjct: 3 PGEQLTVVLHQTRSTDNLGAVARIMANFGYSRLILSEP-VLKSIEGAERLAVKSDFVLRG 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + V S+L EA+ D + TT+R + ++VL P+EA L E G V ++FG E+ Sbjct: 62 MEVTSDLGEALKDCVYAVGTTSRTQLKGRTVLTPEEAMQRLAEESVRG-RVALVFGGEQR 120 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 G+++E++A +++ P + + PS+N++Q+ ++++ C + + E+ A G Sbjct: 121 GMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQGL--TPTAAVEEAPGAKLG 178 Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250 L + + + + P + + +L++L +R L + E L L++ Sbjct: 179 TLGALAKRMRDVMLRAEFLNP-QAPQHVLNELEQTLMRARLTQREAELWLTAFKHLERAV 237 Query: 251 RQSS 254 + + Sbjct: 238 TRGA 241 >gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein [Escherichia coli E128010] Length = 148 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E + + Sbjct: 6 AANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT 65 Query: 176 S---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232 E+ E+ +L F +LE +L G+ R ++++ L +F R Sbjct: 66 QENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPE 124 Query: 233 REEVFLLRGIVSTLDKFSR 251 +E+ +LRGI++++++ ++ Sbjct: 125 SQELNILRGILASIEQQNK 143 >gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From Bordetella Pertussis Tohama I Length = 173 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVR 72 I P N+G ARA+ +L LV PR D +A + ++ A V++ Sbjct: 11 VRFIXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVLERAA 70 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERW 130 V L+EA+A + +A T R R+ +EAA + + V I+ G ER Sbjct: 71 VHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERA 130 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GLTN +I L + I P NP + SLN++QA+ L WE + Sbjct: 131 GLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALL 173 >gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine microorganism HF4000_APKG7N23] Length = 209 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 8/217 (3%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M NF + L LV + + S + +++++ F L+EA+AD AT+ Sbjct: 1 MVNFGIDDLALVKGCEIDDDG--YARSKSGKPILENLSRFDTLEEALADCDVAIATSGIK 58 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 K ++ L + I + +IFGRE +GL E+AL I+ P NP FP Sbjct: 59 PEGDKRWFRAPKSIKELPDLIKEREKPALIFGRENYGLYRGELALCEVTITIPTNPKFPI 118 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 LN+S AV ++++E ++ + E +D + LEE Y P + Sbjct: 119 LNLSHAVGIVLYEIYR----DGNHKNPKKRKAVSNEEFERLVDRIMDLLEETSY--PRRR 172 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + L + R E L GI + + R Sbjct: 173 LDRSRTTLRRLISRGNPDEGEYENLMGIFKAIKEGKR 209 >gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n] Length = 234 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 12/227 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV + N+G++AR NFN+ +L +V P E+A + +A + RV Sbjct: 3 RIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASI--EEALNYAARGKDFLLKARVTD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L EAI + + AT+ + + + + ++V I+FGRE GLT E Sbjct: 61 SLDEAIKGVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTRE 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 EI+ ++ +++ P NP +P+LNISQAV +++WE + +++ A+K L Sbjct: 121 EISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSITATNIPP----LASKETLRQL 176 Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL--YSIFIRPELMREEVFLLR 240 LD E ++K + I + L +E LLR Sbjct: 177 LD----LTVEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLR 219 >gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 269 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 19/239 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++LV+P+ N+G VARAM + L +L +V P+ +K+ ++AN+ ++D+ +V Sbjct: 5 RVVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNAKVVH 64 Query: 76 NLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++AI D A + R ++ K + L++ + + ++FGRE GL Sbjct: 65 KFEDAIGDCSCAVAYSRRIFASSIKHTMV-----QNLSDMLPEDGTIALVFGRESCGLAL 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PA 187 EE+ PV P SLN+ QAV + ++E + +++ + ++ T PA Sbjct: 120 EEVNACTYQCEIPV-PGLMSLNLGQAVSISLYELCRSGALANGEGRAKRTTRGVAETGPA 178 Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 T ++ F +L+ L G + + L+ L R R E+ L G++ L Sbjct: 179 TIQQIDGFKKFLDRYL--TGQYHDQAWRDSFLNTL---LQRLHPTRNELSALFGLLRNL 232 >gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7] gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 227 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 26/235 (11%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +++V+P+ N+G ++R NF + +L +VNP E+A+ SA ++ ++ Sbjct: 2 IRLVIVEPEGSYNLGFISRLAKNFLVDELYIVNPHCDL--EEAKKFSAKGLEYLEKAKIV 59 Query: 75 SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +N EAI D+ AT++ + + + P E RI G+ V +IFGRE G Sbjct: 60 NNFDEAIKDVELKIATSSIADIKGDILRKSIRPWELP-----RIIEGKKVALIFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-- 189 LT EEIA S+ ++ P NP +P LN+S AV ++++E ++ + E + K Sbjct: 115 LTREEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKSRGENKPVISGEAISLIDKYS 174 Query: 190 ----------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 + L+ +L + E+ + ++ L ++I+ L R+ Sbjct: 175 RDLVNLIKSNEGDEAMYIALKRALIKG--IGDEEEARTIIRLLRKLYIK--LTRK 225 >gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter versatilis Ellin345] Length = 239 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 10/179 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV + NIG ARAM NF + LR+VNP D PS + S+ A+ ++ + F + Sbjct: 11 VVLVATRNPLNIGAAARAMSNFGVMHLRVVNPFD--PSFREAQSAVGAEELLRNAEQFGS 68 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + EA+AD + TTA R+R + A +AA ++ E V ++FG E+ GL+NE Sbjct: 69 VAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIREHS---GKVAVLFGSEKRGLSNE 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +++ + ++ P S+N+ QAV + ++E S ++ + AT G+L Sbjct: 126 DLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIARTSSTIADM----EQRRATAGDLEG 180 >gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191] Length = 225 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 IILV P+ NIG ARAM NF L+ LR+ P+ + ++ A+ ++ ++F Sbjct: 2 ITIILVKPRNPNNIGASARAMANFGLSDLRIAG--AHIPNLEEAQAAVGAEDLLKKAKIF 59 Query: 75 SNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL++A+AD +F +A T+ +NRN K +++ +N I G + ++FG E+ GL+ Sbjct: 60 DNLQDALADCNFAFAATSLKNRNTQKEIVS----LPNINNHIKRG-KIAVVFGSEKTGLS 114 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 ++I L +A+++ P PS+N++QAV L+ +E + + K +++ + ++ Sbjct: 115 VKDIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETAKTKNFKTLK--QQKTNLPSFKDID 172 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + + + + + + K + L + +I L ++++F+++ + Sbjct: 173 LLTADILELFDRKEFKKELTKTDRELL-IKNILKSSSLSKKQLFIIKKFL 221 >gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4] Length = 232 Score = 174 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 94/164 (57%), Gaps = 10/164 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +ILV+P+ N+G +AR NF++ QL +VNP+ +KA+ SA + ++ +V Sbjct: 2 IRVILVEPEGEYNVGFIARLCKNFDVDQLYIVNPKCDL--DKAKQFSAKGNTFLERAKVV 59 Query: 75 SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L++AI DL +T++ + + +AP E + ++ R VG++FGRE G Sbjct: 60 DKLEDAIEDLDLKISTSSIADSKGDMLRKSMAPWEISSLIGRR-----QVGLVFGRESVG 114 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 LT EEIA+++ ++ P N +P LN+S AV ++++E ++ + Sbjct: 115 LTREEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWKSKVNE 158 >gi|289804368|ref|ZP_06534997.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 125 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L EA+A + T+AR+R +L P+E + V ++FGRER G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119 Query: 132 LTNEEI 137 LTN+E+ Sbjct: 120 LTNDEL 125 >gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 234 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 111/231 (48%), Gaps = 11/231 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K + V+P+ N+G AR + NF + ++ LVNP+ + + A S +A +I++ Sbjct: 2 IKNIKVAFVEPRYQINLGYEARVLKNFEIRKMYLVNPKCKFNGKNAIKYSKHAHDLIENA 61 Query: 72 RVFSNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +L + F+ TTA ++R F +V+ E + + +N+ ++ GR+ Sbjct: 62 AILKDLNGVTRN-SFVVGTTALWRKSRKYFDNVMTLPEFEEYIRGKSI--ENMTLLIGRD 118 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL +EE+ N+I+ P + +P+LNIS A+ ++++ S + + E ++ Sbjct: 119 NTGLNSEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQKPSSWPQEIGELYADSS 178 Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 ++ L S++ Y R KK+ + ++ +R ++E+ L Sbjct: 179 DLRMIKSL--FGASVDSNPYIR---KKETVKKAFENMLVRANPTKKEINAL 224 >gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348] gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348] Length = 231 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +ILV+P+ N+G VAR NF + QL +VNPR KA SA ++ V V S Sbjct: 3 RVILVEPEGEYNVGFVARLCKNFEVDQLYIVNPRCDLN--KALEFSAKGRDFMEKVVVTS 60 Query: 76 NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+EA+ DL +T++ + + + P E ++ + G++FGRE GL Sbjct: 61 TLEEALRDLDLKISTSSIADSKGDMLRKSMPPWEIV-----KLMENRKTGLVFGRESVGL 115 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T EEI +++ ++ P N +P LN+S AV ++++E +++ + + PA E Sbjct: 116 TREEILMTDIMVHIPANRSYPVLNLSHAVGIVLYEIWKSTHLRGG-----ETGPAPSQET 170 Query: 193 LSFLDYLEISL---------EERGY----------FRPVEKKKKMLDDLYSIFIRP 229 LS +D +L +E Y R E+ + ++ L +++R Sbjct: 171 LSLVDKYVKTLYDAIKRSNGDEAMYIATKRSLLRGIRDEEEGRAVVRFLRKVYMRM 226 >gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639] Length = 235 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 22/247 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RV 73 +++V+P+ N+G +AR + NF + + +VNP+ +A SA VI+ + ++ Sbjct: 3 IRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCDIN--EAIKFSAKGSEVIEKMMKI 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N +AI D+ AT++ + K L K + ER+ + V IFGRE GLT Sbjct: 61 TNNFDDAIRDVDLKIATSSIA--DIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLT 118 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 EEIA S+ ++ P NP +P LN+S AV ++++E N ++ P E + Sbjct: 119 REEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN---------RDNKVPTVSSEPI 169 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE-----VFLLRGIVSTLDK 248 +D + + E K M L + I+ + E V +LR I L K Sbjct: 170 KLIDDYSKKITDI--LVNKEATKSMYLVLKRVLIK-GIEDNEEAMTIVRILRKIYVRLAK 226 Query: 249 FSRQSSR 255 +S + Sbjct: 227 KENESDK 233 >gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 19/234 (8%) Query: 35 MWNFNLTQLRLVNPR--DGWPSEKARSSS------------ANADCVIDSVRVFSNLKEA 80 M NF L++L +V P G P ++ A V++ + ++L+ A Sbjct: 1 MKNFGLSRLAIVAPPSWAGPPRSGGPGTAQEDVLARARRLARRASDVLEGAEIHADLRGA 60 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + ++ TT+R + L P E A + R G+ V ++FG+ER GL++ E+ L Sbjct: 61 LGPAVWVCGTTSREVEG-RPRLDPGELAEEVLRRSAHGE-VAVVFGQERRGLSDAELELC 118 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 A+ S P P + S+N++Q+V ++ +E V + + L + + L+ Sbjct: 119 QAVCSIPTAPAYDSMNLAQSVAVLAYEIGRPRQVRAPAPAAAEPAR--HATLEALWERLQ 176 Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 L E GY P + + +L DL + R E + EV L+ V L++ R+ + Sbjct: 177 ALLGEAGYLNP-QNPEHILADLRRLLARAEPTQREVELVLAAVRALERKLRERA 229 >gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 270 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 23/257 (8%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------PSEKARSSSANA 64 ++LV + NIG ARAM +F LR+VN S++ S+ A Sbjct: 10 RAHLTVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDYAAPFEAAQLEDSQQNVKSAVGA 69 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS------ 117 V+ R +S+L EAIAD I TTA R+ + V+A ++AA + ++ + Sbjct: 70 ASVMAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTLTAADH 129 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFP---SLNISQAVLLMVWECMENSI 173 Q V ++FG E+ GLTNE+++ + + + P+ P S+N+ Q+V + ++E Sbjct: 130 PQQVALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTREGF 189 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPEL 231 S++ AT + L L GY R P + ++ + + Sbjct: 190 EGSKELPVLHEATATAEDRERLTQLLLDVLHATGYSRRFPANASEPIV---RQLVQQLGE 246 Query: 232 MREEVFLLRGIVSTLDK 248 E GI+ + Sbjct: 247 SHREAMTWMGILRQILW 263 >gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia pseudomallei DM98] Length = 192 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R LAP+ A +++ +G ++ ++FG ER GL+NE + +AI P NP + S Sbjct: 1 REYGPPRLAPRAAVASALQQVRTG-DIALVFGNERTGLSNEHVERCSAIAHIPANPAYSS 59 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRP 211 LN++QAV ++ +E + E V T A E+ +LE +L + P Sbjct: 60 LNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEIERMFVHLENALIALDFLDP 119 Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 KK++ L +F R L REEV ++RGI + Sbjct: 120 -RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 153 >gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis F0421] Length = 240 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 17/231 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +I+L P+ +NIG V RAM N + +LR+ + E+ + +AD + + R Sbjct: 3 PIIIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARF 62 Query: 74 FS----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRE 128 F L++A+ D + TT R KS +AP++ A E+ I+FG E Sbjct: 63 FEPSVEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQGA--GKAAIVFGNE 120 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R GLT++E+ + + I+ P FPSLN+S AV ++ +E K + Sbjct: 121 RTGLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFR-----KFSPRKYGYEKIS 175 Query: 189 KGELLSFLDYLEISLEERGYFRPVEK--KKKMLDDLYSIFIRPELMREEVF 237 E+ + + L G FR K ++ +++ I R + ++E Sbjct: 176 MQEVTLLSEKINEYLCLAGLFRHAGKEDNQRFMEE---IIGRAGMSKKEAA 223 >gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 257 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 18/261 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P + ++L PQ N+ + R M NF L+ LRLV P P A + + + Sbjct: 2 PMQPSPLDRVALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRIA-GIAHHTE 60 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +I R F L+ A+AD TT R R + VL P+ AA ++ ++ + Q V I+F Sbjct: 61 PLIARTRRFPTLEAALADCGLTLGTTGRPRETERQVLPPRAAAPMILDQART-QRVAILF 119 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------- 177 G ER GL N + L + +I+ P +P SLN++QA L++ +E ++ Sbjct: 120 GPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYELWMAWTQPNDGPAHRPPA 179 Query: 178 --KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKK---KMLDDLYSIFIRPELM 232 + AT E + ++ L P L ++ +R + Sbjct: 180 AAAPPDATESLATGAEREALFAAVDELLSA---LYPGGSPGRRSSAAARLRALLLRAQPR 236 Query: 233 REEVFLLRGIVSTLDKFSRQS 253 REE L ++ + R+S Sbjct: 237 REEARALTNLLRHAARTGRRS 257 >gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I] Length = 228 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 107/227 (47%), Gaps = 16/227 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P+ N G + R NF + ++ V P+ E+ + +AN +D V+V Sbjct: 3 VRLVLVEPEGKINFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVV 62 Query: 75 SNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + KEA+ + T+A+ + + + + P E L E+ + + ++FGRE GL Sbjct: 63 DDYKEALEG--LVVCTSAKVSSADPLRDFVLPWE----LKEKFGEPERLTLVFGRESVGL 116 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 T EE+ +A++ P +P +P +N+S AV +++WE + + + + + L Sbjct: 117 TREELKECDALLHVPASPQYPVMNLSHAVAVVLWEVWKQYRIEKGAQPERPDERDLRLAL 176 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239 + L +L + K++++ + + + R+E+ L Sbjct: 177 -GVAERLARAL-----IKDEAKRERVTVAIKRLLAKA--TRQELRNL 215 >gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 110/242 (45%), Gaps = 5/242 (2%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++L + +N+G VAR M NF +L L +P + A + + V++ + Sbjct: 5 EQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDP-ATYAFRGAERLAVKGERVLERMA 63 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V L EA+++ + TT+R + + L P++A L E G V ++ G E+ GL Sbjct: 64 VARELPEALSECVYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARG-RVALVLGGEQRGL 122 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 ++ E+A+ ++ P + + PS+N++QA ++++ C + E A G L Sbjct: 123 SDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGREDAQPAPPPEPEPG--ARMGTL 180 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + + L + P + + +L ++ +R +L + E L L + ++ Sbjct: 181 SALGARMNEVLLASEFLNP-QAPEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVKR 239 Query: 253 SS 254 + Sbjct: 240 GA 241 >gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162] gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM 2162] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 8/238 (3%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV + N+G++AR NF + +L +V P ++A + +A +++ V Sbjct: 2 IRVVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVASL--DEALNYAAKGRGFLENAVVT 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EAI + I AT+ + + + + ++V I+FGRE GLT Sbjct: 60 DSLDEAIKGVDMIVATSDEGYSESDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGLTR 119 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EEI ++ +++ P NP +P LN+SQAV +++WE ++ + + NV + + GELLS Sbjct: 120 EEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRGMEAV-NVPRKASRDLLGELLS 178 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252 + S+ EK + + + L +E +L+ + + + RQ Sbjct: 179 LAVDVSRSVMST-----EEKVARSRILWKRMLSKAMLTEKEARVLKYWLQRVRRQLRQ 231 >gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 242 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 10/231 (4%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + VI+L P+ NIG RAM N + +LR+V ++ +K + +A + D+ Sbjct: 2 NLDNIVIVLSRPEEPRNIGAACRAMANNGIHKLRIVGKKEEIDLDKVHVLAIHASYIFDN 61 Query: 71 VRVFSNLKEAIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFG 126 FS++ EA +D T R + +L P+E A N + G V ++FG Sbjct: 62 AEYFSSITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTANRISGTEKKGGKVAVVFG 121 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ER GL + EI ++ P + F SLN+S AV +M + + + K TP Sbjct: 122 NERTGLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRYNEKN-----KIGYTP 176 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237 L + + +L++ G+F V +K M I R L E Sbjct: 177 IDSKRLKKTVTTIADNLQKIGFF-SVTGRKDMEIFWRDILSRSALSEGEAQ 226 >gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 206 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 16/216 (7%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M +LR+V+ + R + + +ID++ VF L +A+ D+ F ATTAR+ Sbjct: 1 MKTMGFARLRIVDS-EAHREPATRWVAHGSGDIIDNIEVFPTLFDALQDVDFTIATTARS 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R F P E +L E+ + ++FGRE GLTNEE+AL++ + P+ +PS Sbjct: 60 RAKFHYYATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPS 119 Query: 155 LNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212 LN+ QAV++ ++ + + E A + ++ L +L+ G Sbjct: 120 LNLGQAVMVYCYQLASLMQQPDKNIDISDEFQLRALRSRVMRLL----STLDVAG----- 170 Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 K++D L L + + +L +V ++K Sbjct: 171 --DVKLVDWLQQRLG--LLGQRDTAMLHRLVHDIEK 202 >gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 241 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 6/233 (2%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + +L +PQ NIG RA+ N +LRLV P + E+ + + +++ + Sbjct: 8 NIITVLHEPQREVNIGSTVRALLNTGFQRLRLVQP-VAYSIERLDDMAHRSGPLVEQIET 66 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F++L EA+A++ ++ + R+R ++V P E A L + V +FGRE GL Sbjct: 67 FASLGEALANVSYVVGFSGRSRGERQAVSLP-EFAPTLTALAAT-APVAFVFGREDRGLD 124 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N I + +IS PV+P +PSLN++ AVLL ++ + + + A+ LL Sbjct: 125 NAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIRGLATSAEPLPSPDLADQASHELLL 184 Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + LD L + + R ++ + + + R E+ L+ I + Sbjct: 185 NLLD---QLLTKLNFSRTAGQQASAVRVMRDLLARSRPSPSEIALVTAICRKM 234 >gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760] gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760] Length = 350 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 23/277 (8%) Query: 1 MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 +TP ++Q+ ++LV P +NIG V R N+ + +L +VNP E+ Sbjct: 79 ITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLCKI-GEE 137 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNE 113 + S + + I+ + ++L+E D + TAR + N + ++ +EA +L+ Sbjct: 138 SIKVSRHGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +G++FG E GL EE + + + +P LN+S AV + + M + Sbjct: 198 M---KGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIAL-NYMHMRL 253 Query: 174 VSSEKNVKE---QNTPATKGE-LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 V E +N KGE L + + L + E+ VE KK + R Sbjct: 254 RDGGDLVPEGCKENIAKEKGELLEQWKEILHSVMNEQREIGAVESMKK-------LLGRV 306 Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266 L E L G L + + + K E Sbjct: 307 MLTEREAAALDGAFKALLHHFHEKEVHSQEINNKKED 343 >gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM 17230] Length = 237 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 19/240 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 +ILV + N+G + R NF++ +L LV P+ S++ R +AN ID V+ Sbjct: 2 IRVILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVK 61 Query: 73 VFSNLKEAIADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ NL +A+ + T++ + + + +E A + ++ + ++FGRE Sbjct: 62 IYENLDDALRGIGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSS----IAVVFGRE 117 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GLT EEI+ + ++ NP +P LN+S AV + ++ + V + ++ ++ PA Sbjct: 118 SVGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYK---VLRKHSLFDRIEPAQ 174 Query: 189 KGELLSFLDYLEISLEERGYF--RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 + EL LE ++E ++++ R L R EV LL + + Sbjct: 175 ENEL----RILEKYIDEIVNIVASDEKQRESFSLVFKRFIRRTTLSRAEVGLLTTFIRRI 230 >gi|258619944|ref|ZP_05714984.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] gi|258587677|gb|EEW12386.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] Length = 135 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV NIG ARAM L+Q+ LV+P+ ++ ++ ++ + + ++F Sbjct: 7 VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQIDAQAIALAAGASEIAL-NAQIFPT 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ A+AD + T+AR+R +L P++ L V ++FGRER GLTN+E Sbjct: 66 LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 124 Query: 137 IALSNAIIS 145 + L + + Sbjct: 125 LQLCHYHVC 133 >gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 15/241 (6%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG VARAM + LR+VN D A S+ +A V+ + +++ EA+AD Sbjct: 27 PSNIGAVARAMHDLGFAHLRIVN--DFPVPFAAAKSAVDASSVLAAATEPASVAEAVADC 84 Query: 85 HFIYATTA-RNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSN 141 + TTA R + +AA + + R + ++FG E+ GL+NEE++ + Sbjct: 85 TLVLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEELSHCH 144 Query: 142 AIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 A+++ P+N S+N+ QA + +++ + TPA +L Sbjct: 145 ALLTIPMNTLTADHHLSMNLGQAAAVCLYQL-ALGDETLTPPAPPTETPAAAADLERLTS 203 Query: 198 YLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 L+ L++ GY R P ++ ++ + R L ++ + GI+ L + S Sbjct: 204 LLQQVLDDSGYTRRHPANSRE---PNVRRLVRRMALSADDAPVWTGILRQLLHALKPGSE 260 Query: 256 R 256 + Sbjct: 261 K 261 >gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 240 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 109/240 (45%), Gaps = 9/240 (3%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 KG ++L + N+G +ARAM N + L + E A + +A ++++ Sbjct: 1 MKGVNVLLSRLEGPVNLGFIARAMANTGFSSLSYTG-TVPYNHEDALKFAVHASDILENA 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E I+ + T R+ + ++ +E ++E + +G VG++FG E G Sbjct: 60 YHPETFEELISTSDVVIGFTPRSPFSTNNLPY-EELKDFVSETVSTGLKVGLLFGNEASG 118 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L N+E++ +S P + + S+N++QAVL+ +W+ E + + + A + Sbjct: 119 LNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQI-----KDIEPDKEAEAEYADRNT 173 Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV-STLDKFS 250 + + L ++ LE YF + + ++ + L + E L+ + ++ ++S Sbjct: 174 IGTLLQRIKDHLELIEYFN-DQNPDHIWKEIRQMIESKRLTKREAELMLSVFGKSISRYS 232 >gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 251 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 10/176 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IIL P+ NIG V R M N + LR+ ++ + + + +A V + R + Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFYP 65 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKEA +D + T+ R + K + ++P++ + L + F G +G++FG ER Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKK--FYGGRLGLVFGNERT 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 GL +EE+ + + ++ P F S N+S AVL++ + I + E + P Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLY---IAEKNNPLSENDNP 176 >gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica HM-1:IMSS] gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica HM-1:IMSS] Length = 350 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 15/273 (5%) Query: 1 MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 +TP ++Q+ +ILV P +NIG V R N+ + +L +VNP E+ Sbjct: 79 ITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLCEI-GEE 137 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNE 113 + S + + I++ + +L+E D + TAR + N + ++ +EA +L+ Sbjct: 138 SIKVSRHGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 VG++FG E GL EE + + + +P LN+S AV + + M + Sbjct: 198 M---KGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIAL-NYMHMRL 253 Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233 V E E L+ + L +++ ++ + + R L Sbjct: 254 RDGGDLVPEGCKEIIAKEKGELLEEWKEILHSV---MNEQREVGAVESMKKLLGRVMLTE 310 Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266 E L G L + + + K E Sbjct: 311 REAAALDGAFKALLHHFHEKEIHSQEINNKKED 343 >gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 251 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IIL P+ NIG V R M N + LR+ ++ + + + +A V R + Sbjct: 6 TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFYP 65 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKEA +D + T+ R + K + ++P++ + L + F G +G++FG ER Sbjct: 66 PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKK--FYGGRLGLVFGNERT 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 GL +EE+ + + ++ P F S N+S AVL++ + I + E++ P+ Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLY---IAEKNNPLTEKDNPS 177 >gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 237 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L+ P+ EN+G VARAM NF + R + +A+ ++D R+ Sbjct: 4 PIRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAEELLDRPRL 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+AD ++ T++R + + P + I+FG ER GLT Sbjct: 63 VRTLDEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT EL Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPPRAAEAGATDAELT 180 Query: 194 SFLDYLEISLEERGYFRPVEK 214 + D L +L G+ E+ Sbjct: 181 AVEDALRAALRGGGFLAGPER 201 >gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 267 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 105/263 (39%), Gaps = 5/263 (1%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P A + G ++L + + N+G ++RAM N QLR P + Sbjct: 5 APAAEESTGWKNGVWVLLNNIEGPVNLGFISRAMANTGFAQLRFCGPVSA-DDPDVLRYA 63 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 ++ + ++ ++ + + + R + + + ++ + + + V Sbjct: 64 VHSGHLRENFTRVEDIGGLCRAMDVVIGMSPRQPWSDGCDITLDQLPALVGQHTAAHKRV 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNV 180 G++FG E GL N ++ ++ P + + S+N++QAVL+++WE + Sbjct: 124 GLLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGASGVGIDPS 183 Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240 PA+ FL+ L LE Y P + + +L + + + E+ LL Sbjct: 184 MPAAAPASMR--EQFLEKLRQYLELIDYLDP-QNPDHLWQELAIMIRKRDWSERELTLLM 240 Query: 241 GIVSTLDKFSRQSSRRNNVLLQK 263 G++ T K + + N + Sbjct: 241 GLIHTSRKRLLSAGHKINTENSR 263 >gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum cryptofilum OPF8] Length = 246 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 15/236 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ILV+P+ +N+GM+ARAM NF +LR+V P ++ A VI+ + + + Sbjct: 5 IVILVEPEKADNVGMIARAMKNFGFYELRVVRPMFESFDRAIAAAMR-ARDVIERMEILT 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTN 134 L+EA + + TTAR + + + I L I G++ GRE GLT Sbjct: 64 TLEEARRGVDLMIGTTAR---VSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIGLTT 120 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 EE++ + + + P + +P+LN++ A ++++E SS VK P + Sbjct: 121 EELSYCDIVATIPSSEDYPALNVANAAAIILYEFFLAFKDSSRFEVK----PVPREAREV 176 Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP---ELMREEVFLLRGIVSTLD 247 + Y+ ++ G R +++ L + + R + EE GI+ + Sbjct: 177 MIRYIGEVIDLLGGMRD---RERFLFTMRRMIERTFPCGISEEEASQALGIIKAVR 229 >gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 203 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + R + + +ID++ VF L +A+ D+ F ATTAR+R Sbjct: 1 MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFQTLADALHDVDFTVATTARSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWEC 168 QAV++ ++ Sbjct: 120 GQAVMVYCYQL 130 >gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis Bt4] Length = 174 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ +FG ER GL+NE + +AI P NP + SLN++QAV ++ +E + E Sbjct: 6 GDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEP 65 Query: 179 NVKEQNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235 A E+ +LE +L + P KK++ L +F R L REE Sbjct: 66 ATPPDAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREE 124 Query: 236 VFLLRGIVSTL 246 V ++RGI + Sbjct: 125 VNIVRGIAKHI 135 >gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 236 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 3/201 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L+ P+ EN+G VARAM NF + R + +A ++D R+ Sbjct: 4 PVRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAGELLDRPRL 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+AD ++ T++R + + P + I+FG ER GLT Sbjct: 63 VRTLDEAVADCAWVVGTSSRAVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT EL Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPARAPEAGATDAELS 180 Query: 194 SFLDYLEISLEERGYFRPVEK 214 + + L +L G+ E+ Sbjct: 181 AVEEALRAALRGGGFLAGPER 201 >gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 203 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + R + + +ID++ VF L +A+ D+ F ATTAR+R Sbjct: 1 MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFHTLADALHDVDFTVATTARSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWEC 168 QAV++ ++ Sbjct: 120 GQAVMVYCYQL 130 >gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M] gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M] Length = 232 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 11/234 (4%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++ V+P+ +NIG +AR NFN L L+NP+ EKA + +A ++ Sbjct: 3 VIVFFVEPEKVDNIGAMARVCKNFN-ADLYLINPKVD-NYEKAFVVAKHAQDLLQKAIEN 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ EA + TT + N + + +P + + S +GI GRE GL Sbjct: 61 KLNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELAERFANSDIKLGIFIGRESIGL 120 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 TNEE++ + I++ P N +P LN + A ++++E ++S K K ++ Sbjct: 121 TNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKHS-----KEGHVNLALPKKEQI 175 Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246 LDY++ +++ +P +K+ + + + + E L G ++ Sbjct: 176 DVLLDYVKKIIDKLP--QPDYRKEYYFIIMRKLITQGIINSREANTLIGFFRSI 227 >gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B] Length = 225 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G ARAM TQL L+ + ++AR + A ++D+ RV + Sbjct: 4 VVLVEPARAANVGAAARAMKTMGFTQLILIGSQP-HLEDEARWVAHGATDILDNARVLDS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ + ATTAR R + ++ L P+E AI L + Q++ ++FGRE GL+N+E Sbjct: 63 FDDLRAEFDLLIATTARERGSPRTFLNPEELAITLGQSGA--QSMALVFGRESSGLSNQE 120 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++ + P+ +PSLN+ QAV++ + ++ E+ + Q A + ++ S Sbjct: 121 LSQCDLFSYVPLAGDYPSLNLGQAVMVYTY-----ALSGVERTIGLQTRDADERQIQSL 174 >gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii] gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii] Length = 154 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 13/156 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVF 74 V+ILV+P+ GENIG AR M NF L +LRLV P G WP+EKAR+ +A A +ID+ +V+ Sbjct: 1 VVILVEPKRGENIGAAARGMKNFGLRELRLVRPAGGEWPNEKARAVAARAVDLIDAAKVY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ADL ++YA + R R A V + +G +G++FGRE GL N Sbjct: 61 DDLDAALADLQYVYAASGRPR------------AQVCDALPPAGTRIGVMFGREDNGLYN 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +E+ +NAI++ +P F SLN+ QAVL+ +E Sbjct: 109 DELVRANAILTIDTDPNFYSLNLGQAVLITCYELFR 144 >gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea DSS12] Length = 230 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 24/201 (11%) Query: 16 VIILVDPQLGENIGMVARA---------MWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 V +LV+P RA + QL LVN ++A + A Sbjct: 4 VFVLVEPT---------RAANVGAAARAIKTMGFEQLILVNS-SLHLEKEAHWVAHGATD 53 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ V ++ + A + ATTAR R + L P E L E+ S + + ++FG Sbjct: 54 ILERTLVVDSVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSDSVKKIALLFG 113 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 RE GL+N E+ L + P+ +PSLN++QAV++ + E + +K ++ Q Sbjct: 114 RESSGLSNSELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQKQIQPQE-- 171 Query: 187 ATKGELLSFLDYLEISLEERG 207 G+L + + ++ L+E G Sbjct: 172 ---GQLQALKNRTQLLLQELG 189 >gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771] Length = 450 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 2/136 (1%) Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 A L + +G+ GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E Sbjct: 21 AETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYE 80 Query: 168 CMENSIVSSEKNVKE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225 M++ + E + + P+TK +L D LE +L+ R YF P KK KM+D+L ++ Sbjct: 81 WMKSGMEDLEAVPFQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 140 Query: 226 FIRPELMREEVFLLRG 241 R +E+ +LRG Sbjct: 141 LSRRAFTEQEISVLRG 156 >gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 237 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L+ P+ EN+G VARAM NF + R + +A+ ++D R+ Sbjct: 4 PVRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAEELLDRPRL 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L EA+AD ++ T++R + + P + I+FG ER GLT Sbjct: 63 VRTLDEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 N+E+ + + + P PSLN++QA L+ ++E + ++ ++ + AT EL Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGATDAELT 180 Query: 194 SFLDYLEISLEERGYFRPVEK 214 + D L +L G+ E+ Sbjct: 181 AVEDALRAALRGGGFLAGPER 201 >gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens] Length = 287 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 38/256 (14%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVI 68 + + ++LV PQ N+G VNP+ + +A++ +AN + + Sbjct: 23 ALERVRVVLVSPQHAGNVGS---------------VNPQCDFRGVEAQTMAANVTSRSKL 67 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +RV L EA+ D T R+ + P L N+ I+FGRE Sbjct: 68 EHIRVTDTLPEALKDCSMAVGFTRRSG----ILRIPDTRLANLCIPPLDSLNLAIVFGRE 123 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSSEKN------ 179 GLTNEE+ + S P SLN+S AV ++ ++E + + N Sbjct: 124 DRGLTNEELMYCTHVCSIPSIQSAGSLNLSHAVAVVLSRLYEQIPHEQAHDPSNYVPIHS 183 Query: 180 --VKEQNTPATKGELLSFLDYLEISLEERGY------FRPVEKKKKMLDDLYSIFIRPEL 231 K A+ + + + E+ L+ +++ML + + +R Sbjct: 184 TSFKNLPGTASIEAVENLMRRWELVLQACNQATVALGIPNYRMQERMLVHVRRMLLRTGP 243 Query: 232 MREEVFLLRGIVSTLD 247 +E+ L G ++ ++ Sbjct: 244 SLKELGFLHGFLTMVE 259 >gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 203 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 38 FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97 T LR+V+ + R + + +ID++ VF L +A+ D+ F ATTA +R Sbjct: 1 MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFRTLADALHDVDFTVATTACSRAK 59 Query: 98 FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 F +P E +L E+ ++ ++FGRE GLTN+E+AL++ + P+ +PSLN+ Sbjct: 60 FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119 Query: 158 SQAVLLMVWEC 168 QAV++ ++ Sbjct: 120 GQAVMVYCYQL 130 >gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT Length = 196 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%) Query: 50 DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 + AR + A ++D V+ F+ L++A+AD+ F ATTAR+R F P E Sbjct: 4 EAHLQPAARWVAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLE 63 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L+ER ++FGRE GLTNEE+AL++ + P+ +PSLN+ QAV++ ++ Sbjct: 64 QLSERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQLA 123 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229 V++ G+L + + L+ + + + L Sbjct: 124 SLMGVNAAPQEAAAPE----GQLRALRHRADALLDALEVGDDQKLRDWLHQRL------G 173 Query: 230 ELMREEVFLLRGIVSTLDK 248 L + + +L ++ ++K Sbjct: 174 ALPQRDTAMLHTLLHDIEK 192 >gi|213580756|ref|ZP_03362582.1| tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 115 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 3/112 (2%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ L EA+A + T+AR+R +L P+E L +R SG+ G Sbjct: 61 QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECG--LKKRSGSGKYAGC 110 >gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1] gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 243 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 7/163 (4%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ + N+G VAR NF ++ LV+PR E+A+ +A A +D+ Sbjct: 1 MEKLRIVLVETEGAVNLGFVARLAENFEADEIYLVSPRASL--EEAKRYAARAAWRLDAA 58 Query: 72 RVFSNLKEAIADLHFIYATTA--RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV SNL+EA+ + T++ +R+ ++ LAP EAA VL + V I+FGRE Sbjct: 59 RVVSNLEEALRGVSASLCTSSHMSDRDALRAPLAPWEAAEVL---AATPGTVAIVFGRES 115 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GLT EIAL + S P +P +PSLN+S A + ++E + Sbjct: 116 VGLTRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKAR 158 >gi|119470463|ref|ZP_01613191.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonadales bacterium TW-7] gi|119446388|gb|EAW27664.1| putative tRNA/rRNA methyltransferase (trmH family) protein [Alteromonadales bacterium TW-7] Length = 118 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+ NIG ARAM L++L LV+P S A + SA A V+ + + Sbjct: 6 IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALSAGASDVLGNAVIV 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L++AIAD T+AR+R ++ P+E L +G V ++FGRE Sbjct: 65 DKLEDAIADCALTIGTSARSRTLSWPMVEPRECGEKLVAEAENG-PVALVFGREN 118 >gi|218671238|ref|ZP_03520909.1| tRNA/rRNA methyltransferase protein [Rhizobium etli GR56] Length = 111 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 65/111 (58%), Positives = 87/111 (78%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + Q A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++ Sbjct: 1 MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQAT 60 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 ++ AD VI + +V+ L++AIADL+F+YATTAR+R+N+K V +P AA L Sbjct: 61 ASKADHVIAATKVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVLAAETL 111 >gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 445 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 60/240 (25%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN---------------------- 47 + ++ PQ N+G AR M NF + L LV+ Sbjct: 60 PALSNVRFVMCAPQGPANVGAAARVMQNFGIYDLALVDVGPFVLTTTTRSGDATREISDE 119 Query: 48 --------P-----------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 P R E+A + AD ++ + +EA+ F+ Sbjct: 120 ASEGEGRAPERASEVLGSEARTTPLCEEAMRYACAADWLLADAERCDDAEEALRGCSFVL 179 Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148 ATTAR R+ ++ +EAA + E G V ++FG ER GLTN+E++ ++A ++ P Sbjct: 180 ATTARPRSGT-PLMTAREAAERVREEAKRG-KVAVLFGNERTGLTNDELSWAHAAVAIPT 237 Query: 149 NPL---------F------PSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191 + SLN+S AV ++ +E ++ + + E+ T E Sbjct: 238 AGAGKICRKSLKYTGGTGPTSLNLSHAVGILAYEIFMACGGEATNGEILPEKAKLLTVDE 297 >gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299] gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299] Length = 467 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 42/202 (20%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------- 51 +L PQ +NIG +AR M NF +T LR+V P G Sbjct: 74 PLDNVCFVLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAIHPP 133 Query: 52 ------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105 S++A + +AD ++ R + EA+AD+ F+ ATTAR R N S+ + Sbjct: 134 EVRARAPLSDEAHKFAVHADWLLRDARRCATADEALADVAFVAATTARPRENL-SIADVR 192 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-------------- 151 A+ VL +G V ++FG E GLTN+E+A +N + + Sbjct: 193 AASEVLRRHAANGTKVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRKRYTGA 252 Query: 152 --FPSLNISQAVLLMVWECMEN 171 SLN+S AV ++ +E + Sbjct: 253 KGATSLNLSMAVGVVAYELFQA 274 >gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545] Length = 464 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 47/208 (22%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD----------------- 50 +++ ++L PQ +NIG +AR + NF + LR+V P Sbjct: 85 VRSLLSNVCVVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKA 144 Query: 51 ---------GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 +E+A + +AD ++ R + EA++D F+ ATTAR R N + Sbjct: 145 THPAETRATAPLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVFVAATTARARENL-PI 203 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP----------- 150 L + +A+ + S V I+FG E GLTNEE++L+N + P Sbjct: 204 LDAR-SAVERVKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRG 262 Query: 151 --LF------PSLNISQAVLLMVWECME 170 + SLN+S AV ++ +E Sbjct: 263 EKRYTGGAGPTSLNLSHAVGVVAYELFR 290 >gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii] Length = 338 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 25/223 (11%) Query: 44 RLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--K 99 LV+P + S++AR + N A +++ V V + EA+ + T R+ + Sbjct: 53 WLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRVVN 112 Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 V PK GQ + ++FGRE GLTNEE+ P SLN+S Sbjct: 113 EVPYPKLCIP------AKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166 Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTP---ATKGELLSFLDYLEISLEERG--- 207 AV L + +E + E P A E+ L ++ Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226 Query: 208 --YFRPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +P + ++ L IF R L + EV ++ G ++ +D Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269 >gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii] Length = 338 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 25/223 (11%) Query: 44 RLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--K 99 LV+P + S++AR + N A +++ V V + EA+ + T R+ + Sbjct: 53 WLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRVVN 112 Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 V PK GQ + ++FGRE GLTNEE+ P SLN+S Sbjct: 113 EVPYPKLCIP------AKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166 Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTP---ATKGELLSFLDYLEISLEERG--- 207 AV L + +E + E P A E+ L ++ Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226 Query: 208 --YFRPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247 +P + ++ L IF R L + EV ++ G ++ +D Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269 >gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 5/220 (2%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 M NF +L L +P + A + + V++ + V L EA+++ + TT+R Sbjct: 1 MANFGFFRLILSDP-ATYAFRGAERLAVKGERVLERMAVARELPEALSECVYAVGTTSRT 59 Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 + + L P++A L E G V ++ G E+ GL++ E+A+ ++ P + + PS Sbjct: 60 QLKGRIPLTPEQAVRRLAEESARG-RVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPS 118 Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214 +N++QA ++++ C + E A G L + + L + P + Sbjct: 119 MNLAQAAGVLLYLCGREDAQPAPPPEPEPG--ARMGTLSALGARMNEVLLASEFLNP-QA 175 Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + +L ++ +R +L + E L L + ++ + Sbjct: 176 PEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVKRGA 215 >gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii] gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii] Length = 324 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 105/294 (35%), Gaps = 31/294 (10%) Query: 2 TPYA--PQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---- 53 +P A P L + ++LV P+ NIG VARA NF L +V PR Sbjct: 9 SPAASGPALPHDLLLSDVRVVLVAPKHEANIGAVARAAANFECLNLYIVAPRCDGAAAGW 68 Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS------------- 100 + +AR + D V+D V L++A+AD T R ++ Sbjct: 69 TGEARKVACG-DSVLDRAVVVDTLEQALADTSSSIGFTRRTGAARRTHASLGHLLAEFPF 127 Query: 101 --VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 L P A+ + ++FGRE GLT E+ L + + P + PS+N+S Sbjct: 128 ALPLQPPPVAVPTSAAAAGPCATALVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLS 187 Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218 AV ++ E + A E + G Sbjct: 188 HAVAAVLAELFSRRCGLLAEVELLLRKVAAIAEAVGMSGAESKGGGNNGNHGRRRLP--- 244 Query: 219 LDDLYSIFIRPELMREEVFLLR----GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268 L L ++ R + E L G++ L+ +R+ ++ ++ + Sbjct: 245 LGHLRAVVSRARVNAAESRSLHGLASGVLQRLEPGHPLEARKAQRKQEQQKEPQ 298 >gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 344 Score = 141 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 38/200 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNL-TQLRLVNP-----RDGWP-------SEKARSSSAN 63 +L P+ N+G AR + NF+L + LR+V P RD E A + + Sbjct: 3 FVLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDDDGASAPRLHEDAYKFAVH 62 Query: 64 ADCVIDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++D ++ EA+A+ + ATTAR R N +L A + + I G Sbjct: 63 AKWMLDDCCARGESVLEAVAEASLVVATTARPRENL-PLLTLGAACEKMRDEIARGGKCA 121 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP-----------LFP------------SLNISQ 159 I+FG ER GLTNEE+ L+ +S P + + SLN+ Sbjct: 122 ILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGAGVDGSQTATSLNLGM 181 Query: 160 AVLLMVWECMENSIVSSEKN 179 AV ++ +E E + Sbjct: 182 AVGVVAYELFSQVHAVREDD 201 >gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15] gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15] Length = 245 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 7/176 (3%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V + N+G + R NF + +L LV+P ++ +A A + V +L Sbjct: 8 VAVGIEGPVNLGYIFRLSENFEVDELYLVSPTASV--AESLRWAAKASDMAWKATVVGSL 65 Query: 78 KEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 KEA+ D+ T+ + R+ +S ++P++AA ++ I V ++ GRE GLT + Sbjct: 66 KEALRDVELSVCTSDESSARDLLRSPVSPEQAAELM---IARKGTVALVVGRESVGLTRD 122 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 E+A + + + P +P + +LN+S A ++++E + S E + T A Sbjct: 123 ELAQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRKSPEYEPPSRKTIALAEA 178 >gi|289803175|ref|ZP_06533804.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDY 198 ++ NP + SLN++ AV ++ +E + + E E+ +L F + Sbjct: 2 YHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGH 61 Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 LE +L G+ R ++++ L +F R +E+ +LRGI++++++ ++ Sbjct: 62 LEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 113 >gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio bacteriovorus HD100] Length = 261 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 18/251 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV NIG +RAM N + +L L++P+ E A+ ++A + + + Sbjct: 7 IRIVLVRTIYERNIGATSRAMSNMGIEKLILIDPKCEITYE-AQQAAATGQTGLQNRTTY 65 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-------NVGIIF 125 ++ E + A TAR+ + V E + ++ Q V ++F Sbjct: 66 ASWDEFMKQEPESIKVAFTARDGKG-RQVRDVDEVLKDIADKAPQFQVESDVPYVVHLVF 124 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G E WGL E++ +N P SLN++QA LL ++ K + Sbjct: 125 GPEDWGLAGEDLEHANFCACIPTFGDNWSLNLAQATLLGMYSLRRTWGGQRTKLDGGKVR 184 Query: 186 PATKG----ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241 A +G + + L LEE G+ ++K + L + ++ ++E+ +L Sbjct: 185 RAPQGIDGIDPEATLKTW---LEEMGFDLTRQRKINVFTVLRRMLLQNTPTKKELVILET 241 Query: 242 IVSTLDKFSRQ 252 ++ + R+ Sbjct: 242 VLQQSIRKLRE 252 >gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380] gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380] Length = 166 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 2/126 (1%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +ILV+PQ NIGMVARAM NF +++LRLVNP + +AR + A ++ R Sbjct: 7 KRIRVILVEPQSPGNIGMVARAMGNFGVSELRLVNP-CTYLHPEARKFAVRAAPLLGKAR 65 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 VF +L A+ADL A T R +L A L + + + VG++FGRE GL Sbjct: 66 VFPDLASALADLPMSVAATRRAGKLRGELLD-VADAARLAAGLPAVEGVGLVFGREDAGL 124 Query: 133 TNEEIA 138 T++E++ Sbjct: 125 TSDEVS 130 >gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri] Length = 666 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 33/226 (14%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD----GWPSEKARSS 60 A + V +L P+ N+G +RAM NF LRLV+PR G +AR Sbjct: 39 AHSPPPPLRDVVFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMF 98 Query: 61 SANA-DCVID---SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +A D V++ +++ A D + AT R R N V++ +E A + E + Sbjct: 99 AARGLDAVLERDGRTTTTTSVSAATMDATLVVATCPRPRENV-PVVSLREGARRVAEEVA 157 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF---------------------PSL 155 G V ++FG E+ GL+N+E+ + + P SL Sbjct: 158 RGGRVAVLFGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSL 217 Query: 156 NISQAVLLMVWECMENSIVSSEKNVKEQNTPA---TKGELLSFLDY 198 N+ AV ++ +E V + + T E +D Sbjct: 218 NLGMAVGIVAYELFMAITDVRGDEVSVRGFASHRMTTAERERLIDD 263 >gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f. nagariensis] Length = 393 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 67/101 (66%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P IILV+P++GENIG ARAM NF L+ LRLV P DGWP+ A + +++A ++ S R Sbjct: 5 PQPSIILVEPKMGENIGAAARAMKNFGLSDLRLVKPHDGWPNTLADAVASHAVDLLRSAR 64 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 ++ ++++AIADL +YA TAR R K+ + ++ L + Sbjct: 65 LYDSVEDAIADLDRVYAATARTRYMTKAFVTSRQLPGDLRQ 105 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 27/169 (15%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++FGRE GLTNEE+A +N ++ +P +P LN++QAVL V+E + + Sbjct: 224 RAPRAGVLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNARLDAV 283 Query: 177 EKNVKEQN--------------------------TPATKGELLSFLDYLEISLEERGYFR 210 + A+ GE+ +FL L L++ +F Sbjct: 284 AGASSVEAAAAAGGGGAVAVGSNAEELRARAAAVQLASHGEVENFLRRLVSELDDVNFFE 343 Query: 211 PVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDKFSRQSSRRNN 258 K+ + + ++ + E L EV LL GI+S L +R +R Sbjct: 344 SASKRPATMLSIRNLVAKAEGLTASEVALLHGILSKLTTAARARARVQG 392 >gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri] gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri] Length = 384 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 60/219 (27%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNP--------------- 48 + + + +L PQ N+G ARAM NF + +L+L V P Sbjct: 49 REQRPELENVRFVLCAPQGAANVGACARAMQNFGVYELKLCEVGPNVLERDDAGETAATR 108 Query: 49 --------------------------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + S +A + AD +++ ++++ A+A Sbjct: 109 GTESDAERILDEASEGEGKTPERAANQTLPLSAEALRYACAADWMLEDAERCADVEAALA 168 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F+ ATTAR R ++ +EAA + E G V ++FG ER GLTNEE+A ++A Sbjct: 169 GCTFVLATTARPRTGT-PLMTAREAAKKVAEEAKRG-KVAVLFGNERTGLTNEELAWASA 226 Query: 143 IISFPVNPL---------F------PSLNISQAVLLMVW 166 + P + SLN+S AV ++ Sbjct: 227 AVVVPTAGAGKLCRKSLKYTGATGPTSLNLSHAVGIIAH 265 >gi|258619945|ref|ZP_05714985.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] gi|258587678|gb|EEW12387.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573] Length = 112 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEI 201 + P NP + SLN++ AV L+ +E + S+ +++ EL F ++LE Sbjct: 1 MCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELELFYEHLEK 60 Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + + + ++ ++++ L +F R +E+ +LRGI++++ K Sbjct: 61 VITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 106 >gi|323159255|gb|EFZ45242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein [Escherichia coli E128010] Length = 84 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + I+LV+ N+G VARAM LT L LVNP P +A + +A A VI + Sbjct: 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60 Query: 72 RVFSNLKEAIADLHFIYATTARNR 95 + L EA+A + T+AR+R Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSR 84 >gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 126 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 72/126 (57%) Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +FG E GL+NE++ +N ++ P + + SLN+S AV ++ + + N ++ Sbjct: 1 MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAYNLYTSKQKKIIYNNTDK 60 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243 + K +L F D+L +LE+ +FRP+EKK+ M+ + +IF + L + E+ L GI Sbjct: 61 SEIVGKSDLFKFYDFLIGNLEKTRFFRPIEKKEFMVKSIKNIFSQQPLTKRELKTLMGIF 120 Query: 244 STLDKF 249 S+L K+ Sbjct: 121 SSLKKY 126 >gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299] gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299] Length = 506 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 47 NPRDGWPSE------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100 NP D S +A + AD ++ + EAI+D F+ ATTAR R N Sbjct: 169 NPADDPASPAPPLCDEAYRFACAADWLLADAKRCDTALEAISDCTFVMATTARPRGNV-P 227 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL--------- 151 ++ + AA +L + G V ++FG ER GLTNEE+A ++A ++ P Sbjct: 228 LVTARVAAEMLAKEAKRG-KVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLK 286 Query: 152 F------PSLNISQAVLLMVWECMENSIVSSEKNVK 181 + SLN+SQAV ++ +E + ++ + Sbjct: 287 YTGGTGPTSLNLSQAVGVLAYEMFMAADAANGVGTR 322 >gi|330814240|ref|YP_004358479.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327487335|gb|AEA81740.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 108 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 41/96 (42%), Positives = 60/96 (62%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S K I+L+ PQ+GENIG ARAM NF L++L +VNP++ WP+ KA +S A +I Sbjct: 2 SLKNISIVLIKPQIGENIGATARAMKNFGLSKLAIVNPKEKWPNTKAVYTSVKAVDIIHK 61 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 +VF + +A+ ++ATTAR RN K + + E Sbjct: 62 AKVFKSTSDALRKSDIVFATTARIRNLNKKIYSLDE 97 >gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] Length = 235 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 46/232 (19%) Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118 A ++D + ++K AI D I+A +AR+R + VL P AA V +++ Sbjct: 1 GAGILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKN 60 Query: 119 --------------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 + I+FGRE GLTNEE++L++ I P N +P LN++ Sbjct: 61 TLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVA 120 Query: 159 QAVLLMVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFL 196 A+ ++ + + + + + PA + L Sbjct: 121 SAIQVITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANL 180 Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + I+L +R + K + + L + R +L ++E L+R +++ +++ Sbjct: 181 ESAIITLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 232 >gi|213580755|ref|ZP_03362581.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 101 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Query: 155 LNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRP 211 +N++ AV ++ +E + + E E+ +L F +LE +L G+ R Sbjct: 1 MNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR- 59 Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 ++++ L +F R +E+ +LRGI++++++ ++ Sbjct: 60 ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 99 >gi|167621113|ref|ZP_02389744.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia thailandensis Bt4] Length = 128 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF 98 AD V+ S V L +A+ + + A TAR+R Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSREYG 115 >gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 167 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 38 FNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA--- 92 L LV P D +K ++ A V+ + + +S L +A+ + + T Sbjct: 1 MGFNDLTLVKPHDLKVLHRQKVIQRASGAMDVLTNAQTYSTLDDAVDGFNVVCGTGMPFD 60 Query: 93 -RNRNNFKSVLAPKEAAIVLNERIFSGQ----------------NVGIIFGRERWGLTNE 135 + + P+ L + + + ++FG E+ G+T Sbjct: 61 MYQTRLEREYVEPRIYFDGLISNVIANNHSTDDTNDRHQHSNSIRLALVFGSEKTGMTES 120 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + ++ P NP F SLN++ AV L+ ++ Sbjct: 121 DMDTCHVMLGIPTNPQFGSLNLAAAVQLIAYDWRVA 156 >gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri] Length = 232 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 2 TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + A L N A G V ++ P++ N+G AR+ F LRLV P S A S+ Sbjct: 46 SDPARALVNPALGDVAVVFCSPKIASNVGAFARSCAAFECVDLRLVTPACDAGSRAALSA 105 Query: 61 SANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF- 116 + A ++ F L EA+ A + + + + + Sbjct: 106 AKGAQGLVRVASSSGTFDTLVEALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADAFPGG 165 Query: 117 --SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMEN 171 G + ++FG E GLT EEIA +A+ + P+ L SL+++ A ++ + +E Sbjct: 166 DVEGGKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERRVR 225 Query: 172 SIV 174 + V Sbjct: 226 AGV 228 >gi|167720293|ref|ZP_02403529.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia pseudomallei DM98] Length = 112 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 A + +LV+P N+G ARA+ ++L LV PR +A + ++ Sbjct: 20 ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 AD V+ S V L +A+ + + A TAR+R Sbjct: 80 GADDVLASAHVVPTLADALNGVQWSLALTARSR 112 >gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis] Length = 302 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 39/219 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P ++LV P+ ++G VAR++ F LR+V P + +R+ S Sbjct: 68 PVQLDPPPLLHDVCVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSK 127 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATT----ARN---RNNFKSVLAPK---------- 105 A ++ + L+ A+A + F A T R R+ + + AP+ Sbjct: 128 GAQFLLWQAQRHGTLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAPQIVALLSPSHL 187 Query: 106 EAAIVLNERIFSGQNV----------------------GIIFGRERWGLTNEEIALSNAI 143 E A +G ++ ++FGRE GLT E+ + +A Sbjct: 188 EPAAATKHDGNAGGSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDAT 247 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +S P+ L S+++S AV +++ E ++ V + Sbjct: 248 LSIPIGRLQESMSLSHAVSVVLSRLFEQRALAGSYAVPQ 286 >gi|237806517|ref|ZP_04593221.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027630|gb|EGI07685.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 76 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 NIG ARAM N L++L LV PR +PS A + ++ A ++++ +V + L+EA+ Sbjct: 1 TTHPGNIGGAARAMKNMGLSRLVLVEPR-IFPSPDADARASGATDILEAAQVVATLEEAL 59 Query: 82 ADLHFIYATTARNRNNF 98 + T+AR+R+ Sbjct: 60 VGCRLVLGTSARDRSLP 76 >gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis] Length = 365 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 66/354 (18%), Positives = 114/354 (32%), Gaps = 102/354 (28%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P +L G ++LV P+ NIG V RA NF + +V+ R + +S Sbjct: 11 PPLCSELPLLLTGVRVVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTS 70 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV--------LAPKEAAIVLNE 113 N+ V+ S+R+ L +A+AD T R+ P +L + Sbjct: 71 CNS-HVMHSMRLVPTLADALADCSGSIGFTRRSGAGRVVHASLPQLLARFPAAVPALLGD 129 Query: 114 -----------------------------------RIFSGQNVGIIFGRERWGLTNEEIA 138 V ++FGRE GL E+ Sbjct: 130 PQQQAAAQQGERQAATPPGAGQPAASGTAGTAAAGAAAPAGPVALVFGREESGLLESELL 189 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM----------------------------- 169 L + S P PSLN+S AV +++ + Sbjct: 190 LCSHACSIPTGRSQPSLNLSHAVAVVLAQLFDIQQQRLLLAEQAQEQRQQQEQQQLPGAF 249 Query: 170 ----------ENSIVSSEKNVKEQNTP---------ATKGELLSFLDYLEISLEERGY-- 208 ++ + +++ T A++ EL S L + LE G Sbjct: 250 GAPALGPSAVAQALAAGGSLFEDERTRWRRQQALQVASQAELESLLLRVAALLEAAGISA 309 Query: 209 --------FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 +KK+++ + S+ +R + EV L G+ L++ R + Sbjct: 310 EESIGGGDKSNHGRKKRLMGHVRSLLLRSQASTVEVRSLHGLCKELERRQRGQA 363 >gi|213622389|ref|ZP_03375172.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 95 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 161 VLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217 V ++ +E + + E E+ +L F +LE +L G+ R + Sbjct: 1 VQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR-ENHPGQ 59 Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +++ L +F R +E+ +LRGI++++++ ++ Sbjct: 60 VMNKLRRLFTRARPESQELNILRGILASIEQQNK 93 >gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii KC4] Length = 152 Score = 105 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ N G +AR T L LV P + ++ + V+++ Sbjct: 3 IVLVEPEIPANTGNIARTCAATGAT-LHLVRPLGFYTDDRHLRRA--GLDYWHLVKIYYH 59 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + A D F TT R + V P ++FG+E G Sbjct: 60 DSFADLCRAYPDACFFL-TTTRAERWYTQVRYP--------------PGSFLVFGKESTG 104 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L E + + I P+ P SLN++ AV ++++E + Sbjct: 105 LPEEILQAFPDRWIRIPMVPGARSLNLANAVAIVLYEALRQQGFPG 150 >gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 186 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 23/177 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G + R N QL LV P +K + + +V Sbjct: 5 IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPLGFELDDKKLRRA--GLDYHEYAHLQVH 61 Query: 75 SN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIF 125 + L++A D H I A T K E FSG NV ++F Sbjct: 62 DDWSVAKQALQDA--DCHTITALTT---KLSKPFYDYDFGGQETAESGSEFSGNNVAMVF 116 Query: 126 GRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G E GL + E+I ++ + P+ SLN+S +V + ++E S ++ Sbjct: 117 GSETAGLADDIREDIG-ADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQGFSGDEG 172 >gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 186 Score = 99.4 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 23/177 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G + R N QL LV P +K + + +V Sbjct: 5 IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPLGFELDDKKLRRA--GLDYHEYAHLQVH 61 Query: 75 SN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIF 125 N L++A D H I A T K E FSG NV ++F Sbjct: 62 DNWSIAKQALQDA--DCHTITALTT---KLSKPFYDYDFGGQETAESGSDFSGNNVAMVF 116 Query: 126 GRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G E GL + E+I ++ + P+ SLN+S +V + ++E ++ Sbjct: 117 GSETAGLADDIREDIG-ADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQGFGGDEG 172 >gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus carboxydivorans Nor1] gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus carboxydivorans Nor1] Length = 153 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR +L LV P ++ + + V N Sbjct: 4 IVLVEPEIPGNTGNIARLCAAT-CCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYHEN 62 Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +E A +F + TT K + A + ++FG+E GL Sbjct: 63 FQEVADRYAGHNFYFNTT----KAQKRYTDIRYTAGDV-----------LVFGKETAGLP 107 Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 EE+ +N I P+ SLN+S AV ++ +E + Sbjct: 108 -EELLRANWPNCIRIPMLEDARSLNLSNAVAVVAYEALRQ 146 >gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 154 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ ++E + F YATT N+ ++ F + ++FG+E GL Sbjct: 63 SFAEVQEKYQEGRFFYATTKANQRY--------------SDIAFQDGD-FLVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A ++ I P++ SLN+S + ++V+E + Sbjct: 108 PPELLAANADTCIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147 >gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + V ++FGRER GLTNEE+ + ++ NP + SLN++ AV ++ +E + + Sbjct: 8 AANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT 67 Query: 176 SEKNVKEQNT 185 E + ++ Sbjct: 68 QENGEQVEHE 77 >gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral taxon 137 str. F0430] gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis F0399] gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral taxon 137 str. F0430] gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis F0399] Length = 162 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + +L LV P K + + +V Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDNKYLKRAGLDYWHLVTVHYHDR 61 Query: 77 LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E + F + +T +R + P + ++FG+E GL Sbjct: 62 FDEVLEMYPNRTFYFCSTKASRTHCDVAYPP---------------DAFLVFGKESAGLP 106 Query: 134 NEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ +A + I P+ SLN+S AV ++ +E + Sbjct: 107 HDLLAAHRDRTIRIPMASGARSLNLSNAVAVVAYEALRQ 145 >gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter upsaliensis RM3195] gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter upsaliensis RM3195] Length = 154 Score = 95.5 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L ++ P SEKA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNVGF-KLHIIKPCVFDLSEKAVKRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L+E + F +ATT + K + K A + FG E Sbjct: 61 ESLEEFLRSNLQCKERFFFATT----KSKKPYFSVKFRAGDF-----------LFFGSES 105 Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL NE + L+ A I+ P+ P SLN++ +V ++ +E + Sbjct: 106 FGLPNELMNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQ 148 >gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii H 168] Length = 162 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 26/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ +N G +AR + L L+ P ++ + D + ++ Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTG-SSLHLIEPLGFSIDDRYLKRA--GLDYWDKLDIYYY 59 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E D +F +ATT A + + +N I+FG+E G Sbjct: 60 DSLEELMKKYKDSNFYFATT---------------KAPKSYDIVSYQENDFIVFGKETAG 104 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 L E + +N I P+ SLN+S +V ++++E + K+ Sbjct: 105 LP-ESLLKNNIENCIRIPMKDNTRSLNLSNSVAIILYEALRQLNFPGLKH 153 >gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 154 Score = 95.1 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L ++ P SEKA + D ++ ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPCVFDLSEKAVKRA--GLDYWDKLKPMIW 60 Query: 75 SNLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L+E + F +ATT + K + + A + FG E Sbjct: 61 ESLEEFLGSNLQCKERFFFATT----KSKKPYFSVEFRAGDF-----------LFFGSES 105 Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL NE + L+ A I+ P+ P SLN++ +V ++ +E + Sbjct: 106 FGLPNELMNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQ 148 >gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 156 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P +K + + + + + Sbjct: 4 IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYYDS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++E +A ++ + +L A R+ G + +IFG+E GL E Sbjct: 63 VEEVLAAY----------PDSPRFLLT--THAHKSYSRVHYGPDSLLIFGKESAGLP-EA 109 Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ +V ++++E + Sbjct: 110 FRQAHEEECVRIPMVSEARSLNLANSVSIVLYEALRQ 146 >gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1] Length = 153 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 29/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P++ N G +AR T L LV+P +K + VR+ Sbjct: 8 VVLVEPEIPPNTGSIARLC---GATDTVLHLVHPLGFDTDDKHLKRA--GLDYWQHVRIV 62 Query: 75 --SNLKEAIA--DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 SNL+E +A D + +Y + R P + +IFGRE Sbjct: 63 HWSNLEEFLAAQDENRLYFLSKKTQRPYTAISFTPGDF---------------LIFGRET 107 Query: 130 WGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL E + L ++ + P+ NP SLN++QA ++++E + Sbjct: 108 KGLPAEILELYADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151 >gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis MCE9] Length = 156 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 31/166 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVIDSV 71 I+LV P++ N+G + R N L LV P +K + +A ++ Sbjct: 4 IVLVSPEMPANVGNIIRLSANTGC-NLHLVRPFLFHLDDKHLKRAGLDYHEHA-----NI 57 Query: 72 RVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ + L+EA+ D + +A + + + L++ F +V IFGR Sbjct: 58 KIHNTLEEALNTIGTDRNRCFAISTKGKK-------------HLSDINFQKGDV-FIFGR 103 Query: 128 ERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + E I + + P+ SLNIS AV + V+E Sbjct: 104 ESAGLKDYEWSIIGIDQAVRIPMKANSRSLNISNAVAITVYEAWRQ 149 >gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus hydrogenoformans Z-2901] Length = 153 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G +AR + L LV P +K + D VRV Sbjct: 4 IVLVEPEIPYNTGNIARTCAATG-STLHLVKPLGFSTEDKYLKRA--GLDYWDKVRVIYH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E + F Y +T R + P + ++FG+E G Sbjct: 61 ENFQELREKYPEGRFFYLSTKGKRYYHEVSYKPGDF---------------LVFGKETQG 105 Query: 132 LTNEEIALSNAIIS--FPVNPLFPSLNISQAVLLMVWECMEN 171 L +E+ +N + P+ P SLN+S V ++V+E + Sbjct: 106 LP-QELLEANKEFTFRIPMLPQIRSLNLSNTVAIVVYEALRQ 146 >gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 157 Score = 94.4 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G +AR N +L L+ P SEKA + + V+ Sbjct: 4 IVLVHPKIPPNTGNIARLCVNLG-AKLHLIEPLGFDISEKAVRRA--GLDYWKDLDLTVW 60 Query: 75 SNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +A+ H ATT R +++ P + +IFG E Sbjct: 61 ESIEAFLAEHPIDGHCHL--ATTKTERLYWEAEYHPGDW---------------LIFGSE 103 Query: 129 RWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + I+ P++P S+N+S AV ++ +E + S Sbjct: 104 TEGLPAELLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQS 148 >gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus AHT2] Length = 164 Score = 94.4 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV+P++ N G +AR T L LV+P +K + D +++ Sbjct: 19 VVLVEPEIPPNTGSIARLC---GATDTILHLVHPLGFKIDDKHLKRA--GLDYWDQIKIV 73 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 S+L + TA++ + + + A L + ++FG+E GL Sbjct: 74 NWSDLDAFL---------TAQDE---QRLHFLSKKADRLYTEVRFQPGDFLVFGKETKGL 121 Query: 133 TNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172 E +AL ++ + P+ NP S+N++QA ++++E + Sbjct: 122 PEETLALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAIRQQ 163 >gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2] gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2] Length = 156 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV PQ+ N G + R N + L LV P S+KA + + + +V+ Sbjct: 4 IVLVHPQIPPNTGNIGRLCVNTG-STLHLVKPLGFDISQKAVKRA--GLDYWEKLDLKVW 60 Query: 75 SNLKEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E + + + +ATT ++ F+ P + + FG E G Sbjct: 61 DSLDELLHNCNLSRAFFATTKSSKPYFQVQYQPGDF---------------LFFGSETKG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + ++ P+ SLN++ +V ++V+E + Sbjct: 106 LPMELMEK-HWEHAVTIPMTKEGRSLNLAVSVGVIVYEGIRQ 146 >gi|23345065|gb|AAN17743.1| unknown [Xenorhabdus nematophila] Length = 60 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + F + E L E G+ R V ++++ L ++ R +E+ +LRGI+++++K+++ Sbjct: 1 MERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSMEKWAK 59 Query: 252 Q 252 + Sbjct: 60 K 60 >gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI] gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI] Length = 152 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 22/167 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G +AR T L L+ P G+ +E A D + V Sbjct: 3 VVLVEPEIPANTGNIARTCAATGAT-LHLIKPL-GFSTEDRYLKRAGLDYWNLVRVLYHD 60 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + F ATT R + P ++FG+E GL Sbjct: 61 SFGEFAASYRGCRFYLATTKARRLYTEVSYEP---------------GSCLVFGKETKGL 105 Query: 133 TNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + I P+ SLN++ AV ++++E + K Sbjct: 106 PPEILDGYPDGQIRVPMIDGARSLNLANAVAVVLYEALRQQGFPGLK 152 >gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+LV+P++ +N G +AR LT+ L LV P +++ + D V V Sbjct: 3 IVLVEPEIPQNTGNIARTCA---LTKTALHLVKPLGFSLADRFLKRA--GLDYWDKVEVQ 57 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F +L EA F ATT R + V P+++ ++FGRE Sbjct: 58 LWESFGDLLEANPGAAFYLATT-RAGQAYHQVSYPQDSW--------------LVFGRES 102 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + I P+ + SLN+S +V ++++E + Sbjct: 103 SGLPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEALRQ 145 >gi|26417538|gb|AAM75409.1| probable methyltransferase PA3817 [Pseudomonas putida] Length = 61 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + ++LV+ NIG ARAM N L++L LV P+ +P +A + ++ AD V+ + Sbjct: 2 LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPDAEASARASGADDVLGNA 60 Query: 72 R 72 + Sbjct: 61 Q 61 >gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV+P++ N G +AR L LV P +K+ + ++ ++ Sbjct: 7 IVLVEPEIPPNTGNIARLCAVVG-ADLHLVKPLGFKTDDKSLKRA--GLDYWHRLKMTIY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ARN + + K I G +IFGRE GL+ Sbjct: 64 EDFDD----------FEARNPGGKRYLATTKGKIIYSETTFEEGCY--LIFGRETKGLSP 111 Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E +A +I P+ SLN+S AV ++ +E Sbjct: 112 EILARYPEHLIRLPMKNECRSLNLSNAVAIVTYEVFRQW 150 >gi|289677966|ref|ZP_06498856.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 85 Score = 93.6 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234 +S AT E+ F +LE +L G+ P EK + ++ L ++ R E+ R Sbjct: 1 ASRPASAHNAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERS 59 Query: 235 EVFLLRGIVSTLDKFSRQSSRR 256 E+ +LRG+++ K +R + Sbjct: 60 ELSILRGVLTETQKAARGEPYK 81 >gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 155 Score = 93.6 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 20/168 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P ++ + + + + + Sbjct: 3 IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDRYLKRAGLDYWHLVDIHYYDS 61 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +A D TT +R+ + ++ +IFG+E GL Sbjct: 62 VEEVLAAYPDAPRFLLTTHAHRSYTRVEYT---------------KDSLLIFGKESAGLP 106 Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +A + I P+ P SLN++ +V ++++E + E+ Sbjct: 107 EAFRMAHEDECIRIPMVPEARSLNLANSVSIVLYEALRQVHFDLEEGT 154 >gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541] gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541] Length = 209 Score = 93.6 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P +K + + V + Sbjct: 48 IVLVEPEIPGNTGNIARLCAGTGM-DLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHDS 106 Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + F + TT A + I + +FG+E GL Sbjct: 107 FSDVRKQYKGHPFYFCTT---------------KAAHIYSDIVYTSDAFFVFGKETEGLP 151 Query: 134 ------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 NEE + P+ SLN+S AV ++ +E + Sbjct: 152 ESLLEDNEE-----HTVRIPMQAGARSLNLSNAVAVVAYEALRQ 190 >gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 233 Score = 93.6 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 24/191 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + + +I P+ N+G +ARA F R+ P +++ Sbjct: 47 ALEDPPGTLRDVCVIFCSPKTASNVGAMARACAAFECCDFRVATPLCDVECRACVNAAKG 106 Query: 64 ADCVIDSVR-VFSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERI------ 115 A ++ ++L++A+ + + F A R Sbjct: 107 AQWLVPRAADAHASLEDALRGTVGTVVG--------FHPWRLDDAEAEASRARFDDLAAL 158 Query: 116 --------FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G + ++FG E GL+ E+AL +A+ S P+ L SL+++ A ++ + Sbjct: 159 TAAYPGGGEDGGKLALVFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSR 218 Query: 168 CMENSIVSSEK 178 E S+E Sbjct: 219 FFEAREASAEA 229 >gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum ATCC 27405] gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 2360] gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum JW20] gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium thermocellum DSM 1313] Length = 164 Score = 93.6 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++LV+P++ +N G +AR L LV P ++ + D +++ + Sbjct: 5 VVLVEPEIPQNTGNIARTCAAVG-ANLHLVKPLGFSVEDRYLKRA--GLDYWDKVNIKYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E R++ A L + + I+FG+E GL Sbjct: 62 DSFSEL------------RDKYKEHIFYYSTTKAQKLYTDVKYPDDCFIVFGKETAGLPE 109 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + I P+ SLN+S +V ++V+E + Sbjct: 110 ELLVENKEWCIRIPMRDDIRSLNLSNSVAIIVYEALRQ 147 >gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium sp. YIT 12067] gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium sp. YIT 12067] Length = 170 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR L LV P +K + + + + + Sbjct: 14 IVLVEPEIPGNTGNIARLCAATGCH-LHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYDS 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + E + ++N K L K + + Q+ +IFG+E GL Sbjct: 73 VYEVLEKY----------KDNPKYFLTTKAHSSY--ADVQYAQDSLLIFGKETAGLPETL 120 Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ SLN+S +V ++ +E + Sbjct: 121 LHEYPESCIRIPMIEDARSLNLSNSVAIVAYEALRQ 156 >gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13] Length = 172 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+PQ+ +N G +AR +L L+ P ++K + D + + + Sbjct: 6 IVLVEPQIPQNTGNIARTCAVTG-ARLHLIRPMGFTVTDKHLKRA--GLDYWDKLDITYY 62 Query: 75 SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E A + + TT + R + P N +IFGRE GL Sbjct: 63 DSFAEFSARNPGAYFFFTT-KGRKIHSDAVYP--------------NNAYLIFGREDQGL 107 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E++ ++ + P+ SLN+S +V + V+E + Sbjct: 108 P-EDLLFAHPEECVRIPMRNELRSLNLSNSVAIAVYEALRQW 148 >gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus lipocalidus DSM 12680] Length = 152 Score = 92.4 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++LV+P++ +N G VAR LTQ L LV P ++ + D V V Sbjct: 3 VVLVEPEIPQNTGNVARTCA---LTQTTLHLVKPLGFSLEDRYLKRA--GLDYWDKVEVK 57 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F NL + ATT + + + I+FG+E Sbjct: 58 VWDSFDNLLAVYPGRSYFLATTKSKQRYT---------------DVRYKKGDFIVFGKET 102 Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL E + S ++I P+ + SLN+S AV ++++E + Sbjct: 103 QGLPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEALRQQGFPG 150 >gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)] Length = 183 Score = 92.4 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 14/163 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P++ N G R N QL LV P +K + +++V N Sbjct: 5 IVLVHPRIPNNTGSAIRLCANTG-AQLHLVEPLGFDLEDKKLRRAGLDYHEYANMKVHKN 63 Query: 77 ---LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 KEA+ A + A T + + F E + +N+ ++FG E G Sbjct: 64 WQAAKEALKAAGCERMVALTTKLSHPF------YEYDFSSSNEDSQQENIALVFGSETAG 117 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L ++ E ++ + P+ P SLN++ ++ + ++E Sbjct: 118 LADDIREDIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQQ 160 >gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1] gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1] Length = 180 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G R N QL LV P +K + + +V Sbjct: 5 IVLVHPKIPNNTGSAIRLCANTG-AQLHLVEPLGFDLDDKKLRRA--GLDYHEYAAMQVH 61 Query: 75 SN---LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N KEA+ A H + A T + + F A +++ ++FG E Sbjct: 62 KNWQVAKEALQAAGCHKMVALTTKLSHPFYEYDFGDSNAAE-------HESIALVFGSET 114 Query: 130 WGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL ++ +I SN + P+ P SLN++ ++ + ++E Sbjct: 115 AGLADDIRADIGESNWL-RLPMLPDSRSLNLANSISICLYEVWRQ 158 >gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa SC2] gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa SC2] Length = 154 Score = 92.0 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72 I+LV+P++ N G +AR T L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ ++E F YATT A I ++FG+E GL Sbjct: 63 SFAEVQEKYQAGRFFYATT---------------KAKQQYSDIKFQDGDFLVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + I P++ SLN+S + ++V+E + Sbjct: 108 PPELLAANPDTCIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147 >gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 250 Score = 92.0 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 24/182 (13%) Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59 P A L K P+++L N+G +AR F L +L L +P PSE A Sbjct: 84 PAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAAFFGLPRLILPRDPAAAQPSEAAYR 143 Query: 60 SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + ++ RV +L + A I A T R + Sbjct: 144 VAEGGMTHLELARV-DDLPAFLRSLVAAGYDVIGAAT---RGGLP------------QAQ 187 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +G+ + ++ G E GL+ E A +++ P + SLN+S A +++WE + + Sbjct: 188 SHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWELLVRAPR 247 Query: 175 SS 176 + Sbjct: 248 GT 249 >gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3] Length = 168 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 24/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+LV+PQ+ +N G +AR +L +V P G+ + + A D +D + + Sbjct: 5 IVLVEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + D F Y TT + + I+FGRE G Sbjct: 62 DGLDDFFERNKDSEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 L E + + P+ SLN+S +V + +E + +N Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155 >gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804] gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii] Length = 156 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P++ N G R N QL LV P + + V+V Sbjct: 4 VVLVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A+A AT A + A A + G + +FGRE GL++E Sbjct: 63 LEQALA------ATGA----PPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEH 112 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +AL + P+ SLN+S AV + V+E Sbjct: 113 MALFAPQQCLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149 >gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio cellulolyticus CD2] Length = 164 Score = 91.7 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ +N G + R +L L+ P +K + + V + Sbjct: 5 IVLVEPEIPQNTGNIVRTCAAVG-ARLHLIKPLGFSVEDKYLKRA--GLDYWNEVDISYY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F LKE F YATT A+ I N ++FG+E G Sbjct: 62 DSFQELKEKYTGCSFYYATT---------------KAVKNYAEIEYPDNCFLVFGKETKG 106 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ SLN+S +V ++V+E + Sbjct: 107 LPEDILVDNREWC---IRIPMIGEIRSLNLSNSVAIIVYETLRQ 147 >gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 163 Score = 91.7 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G +AR L LV+P S++ + + V + Sbjct: 8 IVLVEPEIPQNTGNIARTCGALG-ADLHLVHPLGFSTSDRYLKRAGLDYWHLLKVHHHDS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ + D +++ + A + + I + ++FG+E GL EE Sbjct: 67 LQAFLNDY------------GNENLYFVSKKAPLRYDHISYPDRLFLLFGKETAGLP-EE 113 Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ SLN+S AV +M +E Sbjct: 114 LLRKHRDTTVRIPMVAEARSLNLSNAVAIMAYEVHRQ 150 >gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM 18228] Length = 223 Score = 91.7 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 15/170 (8%) Query: 6 PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P+++++D NIG V R F + ++ L P + ++ A Sbjct: 58 EEFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGA 117 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFS-GQNV 121 + +D + F N ++A+ DLH + VLA ++ +L++ I + Sbjct: 118 EFTVDW-KYFKNTQDAVNDLH----------KDGYVVLAIEQCEGSTMLDDLILEKDKKY 166 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I+FG E G+ E + + I P SLN+S +++WEC Sbjct: 167 AIVFGNEVKGVQQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECARR 216 >gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex V453] Length = 154 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR T L LV P +K + + + Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 63 Query: 77 LKEAIA---DLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E A D + YATT A R ++FG+E GL Sbjct: 64 FEELKALYPDGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A S I P+ SLN+S + +MV+E + Sbjct: 108 PPELLAANSEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 147 >gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral taxon 786 str. D14] Length = 154 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72 I+LV+P++ N G +AR + L LV P G+ ++ A A D I+ Sbjct: 5 IVLVEPEIPANTGNIARTCAATGIH-LHLVRPL-GFRTDDATLKRAGLDYWYAVHIEYHD 62 Query: 73 VFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F ++E A F +ATT A+ R + G +FG+E G Sbjct: 63 SFQEVEEKYAGSRFFFATTKAKKRYTDF--------------KFQDGD--FFVFGKETKG 106 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + A + + P+ SLN+S + ++V+E + Sbjct: 107 LPPEILEAHPDTTMRMPMTDKVRSLNLSNSAAIIVYEALRQ 147 >gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a] Length = 168 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 24/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+LV+PQ+ +N G +AR +L +V P G+ + + A D +D + + Sbjct: 5 IVLVEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + D F Y TT + + I+FGRE G Sbjct: 62 DGLDDFFERNKDGEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 L E + + P+ SLN+S +V + +E + +N Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155 >gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8] gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8] Length = 190 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 26/181 (14%) Query: 1 MTPYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 ++P +NS K I+LV+P++ +N G ++R L +V P +K Sbjct: 10 LSPEHQPPENSPKRAHRLNIVLVEPRIPQNTGNISRTCAVTGAA-LHMVRPFGFEIDDKK 68 Query: 58 RSSSANADCVIDSVRVF--SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 + D + ++ NL++ A + F + TT + R P++ Sbjct: 69 LKRA--GLDYWDKLDIYYYDNLEDFFAKNEGEFYFFTT-KGRKVHSDAAYPED------- 118 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + V I+FGRE GL EE+ ++ + P+ SLN+S +V + +E + Sbjct: 119 -----KPVYIVFGREDAGLP-EELLYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 172 Query: 172 S 172 Sbjct: 173 W 173 >gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR] gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR] Length = 152 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 20/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P +K + + +R + N Sbjct: 3 IVLVEPEIPANTGNIARTCAVTG-SVLHLVKPLGFSVDDKHLKRAGLDYWHLLDIRYYEN 61 Query: 77 LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +E A F Y TT + + + ++FG+E GL Sbjct: 62 FQELKAKYPASRFYYVTTKGKKFYTDVPYSADDF---------------LVFGKETAGLP 106 Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + I P+ SLN+S +V ++++E S Sbjct: 107 KELLEENAEFCIRIPMINNVRSLNLSNSVAIVLYEAWRQQGFPSGT 152 >gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] Length = 167 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K I+L++P++ N G +AR + +L LV P +K + + V Sbjct: 2 LKPLHIVLIEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDDKHLKRAGLDYWPLVKV 60 Query: 72 RVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 N E A +F Y +T R+ + + ++FG+E Sbjct: 61 HYHDNFAEVQERYAGHNFYYLSTKAPRSYTEVHYTMDDM---------------LVFGKE 105 Query: 129 RWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 G+ E I +N + P+ P SLN+S +V ++ +E M + Sbjct: 106 SAGIP-EPILKANWEHCVRIPMIPEARSLNLSNSVAVVAYEAMRQMDFQNLAEAGP 160 >gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum nigrificans DSM 574] gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum nigrificans DSM 574] Length = 152 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + L LV P ++ + + + + Sbjct: 3 IVLVEPEIPANTGNIARTCSVTGAS-LHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHDS 61 Query: 77 LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E F Y TT + + + P + ++FG+E GL Sbjct: 62 LQELQEQYPNGRFWYFTTKGGKPHHRVQYRPDDF---------------LVFGKETAGLP 106 Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E ++ + + + P+ SLN+S +V + ++E + Sbjct: 107 REVLSQNPDYCLRIPMLETVRSLNLSNSVAIALYEALRQ 145 >gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 172 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+LV+P++ +N G +AR L LV P EK + V + Sbjct: 5 IVLVEPEIPQNTGNIARTCAATG-AVLHLVKPYGFSLDEKHLKRA--GLDYWHLVEIHEY 61 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ F+ AT R+ F + AP+ + G+ ++FG+E GL Sbjct: 62 ASLQD------FLIATEGRSLYYFST-KAPRSYCD-----VRFGEESWLVFGKETKGLP- 108 Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + P+ SLN+S +V + +E + Sbjct: 109 EDLLAGHYASCLRIPMCGEARSLNLSNSVAIATYEVLRQ 147 >gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class [Methylacidiphilum infernorum V4] Length = 161 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 15/166 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G ++LV PQ+ +N G +AR ++L LV P + A + VR Sbjct: 8 QGLGVVLVAPQIPQNTGNIARICAAT-FSELHLVKPLGFSLEDAALRRA--GLDYWKEVR 64 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +F L E A R R F G ++FGRE GL Sbjct: 65 LF--LWE---GWDHFTAANPRKRLLFFETGT---YPPYFTASFAPGDM--LVFGRETKGL 114 Query: 133 TNEEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ S + I S P+ N SLN++ V ++++E + ++ Sbjct: 115 SQRILSFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQILLGK 160 >gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 207 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ +N G ++R L +V P +K + D + ++ Sbjct: 47 IVLVEPRIPQNTGNISRTCAVTGAA-LHMVRPFGFEIDDKKLKRA--GLDYWDKLDIYYY 103 Query: 75 SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +N+++ A D + + TT + R + P++ + IIFGRE GL Sbjct: 104 NNIEDFFAKNDGAYFFFTT-KGRQVHSEAVYPEDRPVY------------IIFGREDAGL 150 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EE+ ++ + P+ SLN+S +V + +E + Sbjct: 151 P-EELLYAHPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQW 191 >gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4] gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169] gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1] gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1] gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1] gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8] gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7] gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1] gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72] gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E] Length = 181 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 23/165 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L P++ N G + R N QL LV P + + + V Sbjct: 11 IVLFSPKIPNNTGSIIRLCANTG-AQLHLVKPLGFELDDTRLKRA--GLDYHEYATLSVH 67 Query: 75 SNLKE---AIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N +E A+ + I A T + F + V ++FG E Sbjct: 68 DNWQETKSALKSLGVERIVAMTTKFSRPFYEYQF---------KLDNDQHKVALVFGSET 118 Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL EE+ +N + P+ P SLN++ +V + ++E Sbjct: 119 DGLP-EEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQ 162 >gi|167945591|ref|ZP_02532665.1| RNA methyltransferase, TrmH family, group 1 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 92 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221 L+ +E S+ ++K ++ A+ L F +L +LE+ G+ P + K+L Sbjct: 1 QLLAYEVYLASLEEADKPLRAPREVASAEMLEGFHTHLAQALEDIGFADPRQS-DKLLRR 59 Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256 L ++F R R+E+ +LRGI+S R+S RR Sbjct: 60 LRALFHRARPDRDEINILRGILSAAQ--GRKSMRR 92 >gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens SK82] gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 158 Score = 90.1 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLFEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWEN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++E +A L T + + + V ++ G E GL E+ Sbjct: 63 IEECLAHLQ----TKGIGIDAVYPLTT---KGFETPHTADLNRPVALLMGPETRGLP-EQ 114 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + L I P+ P SLN+S A ++V+E Sbjct: 115 VRLMFPEQHWIRLPMAPESRSLNLSNATAVIVYEAWRQQGFQP 157 >gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter alkaliphilus AHT 1] gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter alkaliphilus AHT 1] Length = 152 Score = 90.1 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV+P++ N G V+R T L LV P G+ E+ + A D +++V Sbjct: 3 IVLVEPEIPPNTGNVSRTCAVTG-TTLHLVEPM-GFSIEERQLKRAGLDYWQHLNLQVHE 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L+ + YAT ++ I ++ ++FGRE GL + Sbjct: 61 SLEHFLD-----YAT-------DRNCWFLSTKGKQSYTDIKYHKDDLLVFGRETAGLPDW 108 Query: 136 EIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A + P+ P SLN+S +V ++++E + Sbjct: 109 LLARYPQKCVRIPMGPDVRSLNLSNSVAIVLYEALRQQGFPG 150 >gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. HGF5] Length = 187 Score = 90.1 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR T L LV P +K + + + Sbjct: 38 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 96 Query: 77 LKE--AI-ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E A+ + + YATT A R ++FG+E GL Sbjct: 97 FEELQALYPEGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 140 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + I P+ SLN+S + +MV+E + Sbjct: 141 PPELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 180 >gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM 2032] gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM 2032] Length = 157 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+LV+P++ N G +AR T L LV+P +K + VR+ Sbjct: 11 IVLVEPEIPPNTGSIARLC---GATDTVLDLVHPLGFQIDDKHLKRA--GLDYWPHVRIN 65 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L + L K R G +IFG+E GL Sbjct: 66 HWDSLDAFLQQAD----------ERHLHFLTTKTKRSYTEARFCPGDR--LIFGKETKGL 113 Query: 133 TNEEIAL-SNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 E + L S+ ++ P NP SLN++ A ++++E + Sbjct: 114 PEEILTLYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQ 154 >gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. Y412MC10] Length = 154 Score = 89.7 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR T L LV P +K + + + Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 63 Query: 77 LKE--AI-ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E A+ + + YATT A R ++FG+E GL Sbjct: 64 FEELQALYPEGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 107 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + I P+ SLN+S + +MV+E + Sbjct: 108 PRELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 147 >gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral taxon 158 str. F0412] gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral taxon 158 str. F0412] Length = 161 Score = 89.7 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E D + YATT + E + + ++FG E G Sbjct: 60 ENIEELYEKYPDRRYFYATTKAKHTHS-------EVNYEIGDM--------LVFGPESRG 104 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L + + I P+ SLN+S AV ++ +E M K P Sbjct: 105 LPESLLEGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQLDYPDLKAEGNWIQP 160 >gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC 19707] gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani AFC27] Length = 161 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 25/178 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++P++ N G + R N L LV P ++ + V+V + Sbjct: 4 VVLLEPEIPPNTGNIIRLCANTG-AILHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ + ++A + R + + ++ ++FG E GL Sbjct: 63 LEHFLDKTQPRQLWACSTRGQQPY--------------DKANFHPGDALLFGPETRGLPR 108 Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 E E LS ++ P+ P SLN+S AV ++++E + +++ PAT+ Sbjct: 109 ELLETLLSRQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQ------QGFAKKSKPATQK 160 >gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 179 Score = 89.3 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + +L L + KA+ D +D V+ F L EA+ Sbjct: 32 QSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLD-VQTFETLPEAVE 90 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + R L + A+ L+E SG I G E G++ + + + +A Sbjct: 91 RV--------RADGYRLVGLELADEAVPLHEADLSGA-TCIAVGNEDHGISPQALGMCDA 141 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + P SLN++ A+ + +E + Sbjct: 142 VAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 179 >gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 182 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + +L L + KA+ D +D V+ F L EA+ Sbjct: 35 QSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLD-VQTFETLPEAVE 93 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + R L + A+ L+E SG I G E G++ + + + +A Sbjct: 94 RV--------RADGYRLVGLELADEAVPLHEADLSGA-TCIAVGNEDHGISPQALGMCDA 144 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + P SLN++ A+ + +E + Sbjct: 145 VAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 182 >gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545] Length = 447 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + ++LV + N+G +ARA F LRLV PR + + S++ A ++ Sbjct: 137 ALSDVAVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHG 196 Query: 71 VRVFSNLKEAIADLHFIYA 89 V+ ++++A+ A Sbjct: 197 AGVYDDVEDALRGCDAAIA 215 >gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii C-113] Length = 161 Score = 89.0 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL++P++ N G + R N L LV P ++ + V+V + Sbjct: 4 VILLEPEIPPNTGNIIRLCANTG-AMLHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ + ++A + R R+++ ++ ++FG E GL Sbjct: 63 LEHFLVQTQPRQLWACSTRGRHSY--------------DKANFRPGDALLFGPETRGLPR 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 E + + ++ P+ P SLN+S AV ++++E +S + Q T Sbjct: 109 ELLGILPPQQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFASSRKPATQKT 161 >gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera micronuciformis F0359] gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera micronuciformis F0359] Length = 160 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 +++V+P++ N G V+R ++T L LV P G+ E A D ++D + V Sbjct: 3 VVMVEPEIPGNTGNVSRLCAANHIT-LHLVKPL-GFSLEDKYLKRAGLDYWDLLD-LHVH 59 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +E + + Y TT +++ V + ++FG+E G Sbjct: 60 ENFEEVQQQYPNSRYFYLTTKSDKSYTDIVFREDDM---------------LVFGKETKG 104 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + ++ P+ SLN+S AV ++ +E + Sbjct: 105 LPEDLLKRNADYCFRIPMIDKARSLNLSNAVAIVSYEALRQ 145 >gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter oceani DSM 16646] gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter oceani DSM 16646] Length = 160 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G +AR L LV P ++ + + VR +SN Sbjct: 4 IVLVEPEIPQNTGNIARTCAATG-AVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYYSN 62 Query: 77 ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +E + + TT + + P ++FG+E GL Sbjct: 63 YSEFEEKNRGMPMFFLTTKAEKCYTDVIYEPGSY---------------LVFGKETAGLP 107 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E+ +N + P+ SLN+S A ++++E + Sbjct: 108 -LELLKANWERCVRIPMVDDARSLNLSNAAAIVLYEALRQ 146 >gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1] gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1] Length = 156 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ +N G +AR +L LV P ++K + + D V + Sbjct: 7 IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIVRW 63 Query: 75 ---SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 EA A +LH T + R F V G+ ++FGRE Sbjct: 64 PCTEAFFEAHAADELHL---FTGQARRGFGDV--------------AYGEGSFLVFGRES 106 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I A ++ + P+ SLN+S AV + +E + Sbjct: 107 RGLPLGLIEAHASRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150 >gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2] gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2] Length = 154 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL +P++ +N G + R N L L+ P SEK + + +++ ++ Sbjct: 4 IILYEPEIPQNTGALIRLSANMG-AHLHLIQPYAFDLSEKKVRRAGLDYAELANLKEHAS 62 Query: 77 LKEAIADL--HFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ + + + ++A TT R + V +FG E GL Sbjct: 63 LEACLETIKPNRVFALTTKTERYYTEPVFE---------------NGDAFLFGPETRGLP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + ++ P+ P SLN++ AV +M +E Sbjct: 108 KDVIESVPEDQRLTIPMIPGGRSLNLANAVSVMAYEAWRQ 147 >gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 153 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV+PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L EA +H R ++ R + ++FG E GL Sbjct: 59 YHESL-EAFKTVHQ-------ERGGRWLGYTVGGNFSYVSFRYQADDW--LLFGSETTGL 108 Query: 133 TNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 ++ +A + P++ P SLN+S +V + ++E Sbjct: 109 PPTILSDCDATLYIPMSQPGVRSLNLSVSVAIGLFETRRQ 148 >gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter concisus 13826] Length = 159 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV PQ+ +N G + R N NL +L +V P SEKA + I +++ + Sbjct: 4 IVLVHPQIPQNTGAIGRMCVNANL-KLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIWES 62 Query: 77 LKEAI-ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L E + A+L F +ATT NR + + P + I FG E G Sbjct: 63 LDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDF---------------IFFGGESTG 107 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 L E +I NAI + P+ SLN++ + ++ +E + +I Sbjct: 108 LPREFMDINFKNAI-TIPMGKEGRSLNLAMSAGIIAYEAIRQNISK 152 >gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 171 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 20/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G +AR ++L L+ P SEKA + + +RV+ N Sbjct: 4 IVLVEPEIPQNCGNIARTCAAT-RSRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVYRN 62 Query: 77 LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ A+ ATT ++ + N + FG+E GL Sbjct: 63 LEHFFAENPNPDLWLATTKAPQDYT---------GATFRD------NCYLFFGKETAGLP 107 Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E +A + I P+ SLN+S +V ++ +E + V E Sbjct: 108 EEFRLAHYDRCIRIPMRADARSLNLSNSVAILAYEALRQQGFPQLSGVGE 157 >gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702] gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702] Length = 168 Score = 88.6 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 24/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+L++PQ+ +N G +AR +L +V P G+ + + A D +D + + Sbjct: 5 IVLIEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + D F Y TT + + I+FGRE G Sbjct: 62 DGLDDFFERNKDGEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 L E + + P+ SLN+S +V + +E + +N Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155 >gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium arabaticum DSM 5501] gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium arabaticum DSM 5501] Length = 152 Score = 88.6 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G +AR + L L+ P EKA + D V V Sbjct: 3 IVLYQPEIPPNTGNIARTCACTGAS-LHLIRPLGFSTDEKAVRRA--GLDYWDKVDVNYY 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E +D +F +AT + A I + ++FG+E G Sbjct: 60 DSFRELEEKYSDHNFYFAT---------------KFASKFYTEIEYKSDDFLVFGQETAG 104 Query: 132 LTNEEIAL----SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I P+ +LN++ +V ++++E + Sbjct: 105 LPEEITERYKENC---IRIPMLKEVRALNLANSVSIILYEALRQ 145 >gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] gi|48425869|pdb|1V2X|A Chain A, Trmh gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus] gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus HB27] gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8] Length = 194 Score = 88.6 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 21/173 (12%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L++ N+ + R + + VNP G P+ S ++ + RV + Sbjct: 25 VLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPD 81 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L EA L +YAT R E A E + + ++FG E+WG+ Sbjct: 82 LHEAFRFLKERGFTVYATALR------------EDARDFRE-VDYTKPTAVLFGAEKWGV 128 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + E +AL++ I P+ + SLN+S A ++++E + + + + Sbjct: 129 SEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDP 181 >gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus halophilus Nc4] gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus halophilus Nc4] Length = 171 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 16/178 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L L+ P ++ + V+V + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTG-AHLHLIQPLGFDLDDRRLRRAGLDYHEWARVKVHPS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ HF + R + + + G ++FG E GL + Sbjct: 63 LE------HF----SRRVQPRQVWACSSRGQQPYDKAHFHPGD--ALLFGPETRGLPRKL 110 Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + + ++ P+ P SLN+S AV ++++E ++ E P G+L Sbjct: 111 LNTLSPKQVLRIPMLPASRSLNLSNAVAVVLYEAWRQHNFPGSRDAGE-VAPEPHGDL 167 >gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 261 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 36/179 (20%) Query: 7 QLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L N + PV ++LV+ N+G + R + + LV A +S A Sbjct: 106 PLPNLSPAPVGWVVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGA 165 Query: 65 D-----------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 ++ R IA + ++ R +++++ P+ Sbjct: 166 LFSQQIARTSWPDLLTWARQHR-----IA----LVGSSDRGASDYRATTYPR-------- 208 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G ER GLT+E++A + ++ P+ SLN++ A ++++E + Sbjct: 209 ------PLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDSLNLAVAAGILMYEATRSQ 261 >gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula DSM 2008] gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula ATCC 17745] gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 3_1_44] gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula DSM 2008] gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula ATCC 17745] gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 3_1_44] Length = 161 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E D + YATT + E + + ++FG E G Sbjct: 60 ENIQELYEKYPDRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPETRG 104 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ SLN+S AV ++ +E M Sbjct: 105 LPESLLDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQ 145 >gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 153 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+ +P++ N G R + L LV P G+ + A+ A D + VRV Sbjct: 4 IVFWEPEIPGNTGAAIRLSACTG-SVLHLVRPL-GFDMDDAKLRRAGLDYHDLAHVRVHD 61 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+A + ++A T R A + G G++ GRE GL+ Sbjct: 62 SLDGALAGIPGRVWALTGR--------------AERAYTDVAYGDGDGLLLGRESVGLSE 107 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E ++ + + P SLN++ + ++++E Sbjct: 108 EAMSHPGVAGRVRITMVPGVRSLNLANSAAIVLYEAWRQ 146 >gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] Length = 157 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N T L L+ P EK + D +V Sbjct: 7 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLAKVKRH 63 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +S+ A+A TT +R + P + ++FG E G Sbjct: 64 PDYSSFLGAVAGCRIFACTTKGSRPYDEPAYQPGDV---------------LLFGSETAG 108 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ P SLN+S +V ++ +E Sbjct: 109 LPEDIRNGFDPAFRIRIPMEPDCRSLNLSNSVAIISYEAWRQ 150 >gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120] gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120] Length = 153 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 26/165 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV+PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58 Query: 74 -FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L EA + H + + + + P +A L +FG Sbjct: 59 YHKTL-EAFENAHQERGGRLLGFSV--GGSSSYIQFPYQADDWL------------LFGS 103 Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E GL ++ +A + P+ P SLN+S +V + ++E Sbjct: 104 ETTGLPPTVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQ 148 >gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM 15470] Length = 170 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR +LT L LV P +K + + V V N Sbjct: 3 IVLVEPEIPGNTGNIARLCAAEHLT-LHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHPN 61 Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A HF TT R+ I + ++FG+E GL Sbjct: 62 YDSVVRMLAGHHFYLNTTKAIRSYT---------------DISYDGDDVLVFGKETKGLP 106 Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 EE+ S+ I P+ SLN+S AV ++ E M Sbjct: 107 -EELLRSHKEDCIRIPMIEEARSLNLSNAVAIVAMEAMRQ 145 >gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC 29413] Length = 153 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 24/164 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV+PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 2 PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58 Query: 74 FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + EA ++H + + +++ + P +A L +FG E Sbjct: 59 YHKTIEAFENVHQERGGRLLGFSVSGSSSY--IQFPYQADDWL------------LFGSE 104 Query: 129 RWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 GL ++ +A + P+ P SLN+S +V + ++E Sbjct: 105 TTGLPPTVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQ 148 >gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 156 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P++ N G R N QL LV P + + VRV Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+ D T + + ++ A I +FGRE GL++E Sbjct: 63 LQEALDD-------TGADAGSIYALTT---HAQRSVADIAFKPGDVFVFGRETAGLSDEH 112 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A+ + P+ SLN+S AV + V+E Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150 >gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23] Length = 194 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 13/180 (7%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L++ N+ + R + Q VNP G P+ S ++ ++ V Sbjct: 25 VLMENVHKPHNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE---VHPT 81 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A L R R A KE A E + + I+ G E+WG++ E Sbjct: 82 TEAAFRHL--------RERGFSVYATALKEGARDYRE-VDYTRPTAIVLGAEKWGVSEEA 132 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ +I P+ + SLN+S A ++++E + + + + + L +L Sbjct: 133 LALADGLIHIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGLYDRPRLDPELYQKILEDWL 192 >gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-049-V-Sch6] gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-049-V-Sch6] Length = 161 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 34/176 (19%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E A D + YATT K V + + + + ++FG E G Sbjct: 60 ENIEELYAKYPDRRYFYATT-----KAKHVHS--DVKFEIGDM--------LVFGPETRG 104 Query: 132 LT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L NEE I P+ SLN+S +V ++ +E M K V Sbjct: 105 LPESLLEGNEE-----TCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVG 155 >gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-134-V-Col7a] gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica ACS-134-V-Col7a] Length = 161 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 34/176 (19%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E A D + YATT K V + + + + ++FG E G Sbjct: 60 ENIEELYAKYPDRRYFYATT-----KAKHVHS--DVKFEIGDM--------LVFGPETRG 104 Query: 132 LT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L NEE I P+ SLN+S +V ++ +E M K V Sbjct: 105 LPESLLEGNEE-----TCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVG 155 >gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01] Length = 191 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 4 YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 ++ + + +L++ N+ + R + + VNP G P+ S + Sbjct: 8 RIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGS 67 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + RV +++EAI+ L +YAT R E A E + Sbjct: 68 HKWVYL---RVHPSIQEAISFLKEKGFRVYATALR------------EDARDFRE-VDYT 111 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 Q I+ G E+WG++ E +ALS+ I P+ + SLN+S A ++++E + + Sbjct: 112 QPTAILLGAEKWGVSEETLALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLY 171 Query: 179 NVKEQNTPATKGELLSFL 196 + + L +L Sbjct: 172 EHPRLDPELYQRVLEDWL 189 >gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748] gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748] Length = 161 Score = 87.8 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E A D + YATT + E + + ++FG E G Sbjct: 60 ENIQELYAKYPDRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPESRG 104 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L + I P+ SLN+S AV ++ +E M K P Sbjct: 105 LPESLLEGVEETCIRIPMVDEARSLNLSNAVAIIAYEAMRQLDYPDLKAEGNWIQP 160 >gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 162 Score = 87.8 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR T+L L+ P +K + V+V Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKV 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N++ L E A + ++ +FGRE Sbjct: 59 TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC 27560] Length = 164 Score = 87.8 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 +IL++P++ +N G + R T+L L+ P +EK + D V ++ Sbjct: 3 VILLEPEIPQNTGNIGRTCCATG-TKLHLIEPMGFRINEKNLKRA--GMDYWDDLDVTIY 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + K+ + + ATT P + I+FG+E G Sbjct: 60 DSFKDFMDQHPGIKIWMATTKAPHRYTDVEFGPDDY---------------IMFGKESAG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + I P+NP SLN++ +V ++++E + Sbjct: 105 IPEEILVDNEDTCIRIPMNPEIRSLNLANSVAIVLYEALRQ 145 >gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC 14579] gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241] gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L] gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis str. A2012] gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0488] gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0442] gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0193] gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0389] gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0174] gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis Tsiankovskii-I] gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W] gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus NVH0597-99] gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB108] gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH1134] gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus H3081.97] gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187] gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264] gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842] gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820] gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1] gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB102] gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CDC 684] gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0248] gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A1055] gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Western North America USA6153] gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Kruger B] gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Vollum] gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Australia 94] gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171] gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Ames] gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC 10987] gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. 'Ames Ancestor'] gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241] gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. Sterne] gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L] gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis str. Al Hakam] gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0488] gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0193] gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0442] gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0389] gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0174] gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis Tsiankovskii-I] gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W] gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB108] gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus NVH0597-99] gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH1134] gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus H3081.97] gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187] gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264] gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820] gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842] gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1] gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus 03BB102] gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CDC 684] gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0248] gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis BMB171] gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar anthracis str. CI] gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis serovar chinensis CT-43] Length = 162 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR T+L L+ P +K + V++ Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N++ L E A + ++ +FGRE Sbjct: 59 TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8] gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans A8] Length = 156 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P++ N G R N QL LV P + + VRV Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+EA+AD S+ A A I +FGRE GL+ E Sbjct: 63 LQEALAD----------TGAAPSSIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEH 112 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A+ + P+ SLN+S AV + V+E Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150 >gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0465] gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. CNEVA-9066] gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis str. A0465] Length = 162 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR + +L L+ P +K + V++ Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATGI-ELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N++ L E A + ++ +FGRE Sbjct: 59 TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme DSM 15981] gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme DSM 15981] Length = 169 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L++P++ N G + R T+L L+ P SEKA + D V+V+ Sbjct: 4 VVLLEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAIKRA--GLDYWDKLDVQVY 60 Query: 75 SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ ++ + A + +ATT ++ + P ++FG+E Sbjct: 61 ADYQDFLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCY---------------LMFGKES 105 Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ EEI ++N + P+ SLN+S +V ++++E + Sbjct: 106 AGIP-EEILVANEPYCVRIPMWGEIRSLNLSNSVSIVLYEALRQ 148 >gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 214 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 15/161 (9%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID--SV 71 P+++L N+G +AR M F L +L + + P PSE + S ++ Sbjct: 65 PLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWVEVIRA 124 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + F + + D H I T + VL G+ + +I G E G Sbjct: 125 QKFVAALKRLRDSHRIVGTALGSGKPVAEVLN------------RPGKPIALILGNEEDG 172 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A + I++ P + SLN++ +++ E + Sbjct: 173 LPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213 >gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414] gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414] Length = 153 Score = 87.0 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 20/162 (12%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 2 PQVVLVYPQIPPNTGNIARTCAATG-TELHLVAPLGFEISDRYLKRA--GLDYWPYVKLH 58 Query: 74 -FSNLKEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L EA AT R +V A + ++FG E Sbjct: 59 YHESL-EAFQ------ATHQERGGRCLGFTVRGNFNYASFQFQADDW-----LLFGSETT 106 Query: 131 GLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 GL + ++ +A + P+ P SLN+S +V + ++E Sbjct: 107 GLPSTILSDCDATLYIPMAEPHVRSLNLSVSVAVSLFEARRQ 148 >gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 154 Score = 87.0 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+P++ N G ++R T L LV P +K + SV++ Sbjct: 5 IVLVEPEIPANTGNISRTCAATG-TYLHLVRPLGFKTDDKTLKRA--GLDYWPSVKLEYH 61 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E A F ATT +R V + +FG+E G Sbjct: 62 DSFEEVEQKYAGHRFFLATTKASRTYTDFVFRDGDF---------------FVFGKETKG 106 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ + + + P++ SLN+S + ++++E + Sbjct: 107 LSPNILGQYPDTKMRLPMSNAVRSLNLSNSAAIVLYEGLRQ 147 >gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 156 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G +AR +L LV P ++K + + D V + Sbjct: 7 IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIV-- 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A + + A + G+ ++FGRE GL Sbjct: 62 --------RWPCAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRGLPLGL 113 Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I A +N + P+ SLN+S AV + +E + Sbjct: 114 IEAHANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150 >gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum 2002] gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum 2002] Length = 154 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 25/163 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 ++L P++ N G V R N +L LV P G+P + A+ A + R V Sbjct: 3 TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPL-GFPLDDAKLRRAG-LDYHEYARLVV 59 Query: 74 FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N + A++ ATT + + VL +FG E Sbjct: 60 HENWEACRTALSGRRIFAATT---KGATRHDQTAFRPGDVL------------LFGPESR 104 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E + ++ + P+ P S+N+S AV +MV+E Sbjct: 105 GLPQEVLDSFPADRRVRLPMQPESRSMNLSNAVAVMVFEAWRQ 147 >gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60] Length = 174 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 22/169 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G + R N T L LV P +K + +V+V +N Sbjct: 4 VVLVEPKMPSNTGNIIRLCANTGAT-LHLVEPLGFALEDKKLRRAGLDYHEWANVKVHAN 62 Query: 77 LKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++A + + I A T K + E N+ ++FG E G Sbjct: 63 WQDAQDSLSQSGVQRIVALTT---KLSKPLYD---------EDFAQLANIALVFGSETAG 110 Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E I + + + P+ P SLN+S +V + ++E + Sbjct: 111 LP-EPIRAAIGQDNWLRLPMLPTSRSLNLSNSVAITLFEVWRQQGFGGD 158 >gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium xylanolyticum LX-11] Length = 156 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 30/168 (17%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 ++LV+P++ +N G +AR ++L LV P SEK S + Sbjct: 2 PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRS--GLDYWPYLDL 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V+ NL+E + + ATT + ++ + V E I+FG+E Sbjct: 59 KVYENLEEFLESTKGCKYYLATT-KGKHFYHEVKYEDE--------------SYILFGKE 103 Query: 129 RWGLT---NEEIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMEN 171 GL E+ + I P+N SLN+S +V ++V+E ++ Sbjct: 104 SAGLPQWLREKYE--DDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQ 149 >gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f. nagariensis] Length = 473 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-----GWPSEKARSSSANADCVID 69 ++LV P+ NIG VARA NF L LV PR G + +AR + D V+D Sbjct: 58 IRVVLVAPKHEANIGAVARACANFECLSLFLVAPRCAVGSGGVGAGEARKVACG-DAVLD 116 Query: 70 SVRVFSNLKEAIADLHFIYATTARNR 95 + V L EA+AD T R Sbjct: 117 RLVVTDTLAEALADTAGSIGFTRRAG 142 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 119 QNVGIIFGRERWGLTNEEIALSN---AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FGRE GL+ E+ L + P L PS+N+S AV +++ E Sbjct: 278 HATALVFGREESGLSEAELRLCRCPGHACAIPTGRLQPSMNLSHAVAVVLGEIFSRR 334 >gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 156 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G +AR +L LV P ++K + + D V + Sbjct: 7 IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIV-- 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A + + A + G+ ++FGRE GL Sbjct: 62 --------RWPCAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRGLPLGL 113 Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I A +N + P+ SLN+S AV + +E + Sbjct: 114 IEAYANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150 >gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581] gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581] Length = 162 Score = 86.7 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++L P++ N G + R N +L L+ P +K + + RV Sbjct: 4 VVLFQPEIPPNTGNLIRLCANTGF-RLHLIEPLGFELDDKRLRRA--GLDYHEWARVRVH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + EA++ ++A + R R + G ++FG E G Sbjct: 61 RDWDAFIEAVSP-RRVFAVSTRGRTGYHEP--------------AYGPGDALVFGPETRG 105 Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L + + + + P+ P SLN+S A ++V+E + P Sbjct: 106 LPQAMLDALPEAQRL-RIPMLPESRSLNLSNACAILVYEAWRQLDFEGALAPTTGSAP 162 >gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 154 Score = 86.7 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+L +P++ N G VAR T L LV + G+ ++ + A D + +R Sbjct: 3 IVLFEPEIPANTGNVARTCAVTGCT-LHLVG-KLGFSTDDRQLKRAGLDYWHLLDIRYHD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L+E F V + G N ++FG+E GL + Sbjct: 61 SLEELWELY---------PEGVFHYVET---EGGRWYTEVAYGPNDFLVFGKETKGLPKD 108 Query: 136 EI-ALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 I A ++ ++ P+ + SLN+S AV ++V+E + Sbjct: 109 VIEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147 >gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira thiodismutans ASO3-1] Length = 153 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G +AR T L LV P +K + + V + Sbjct: 3 IVLYQPRIPPNTGAIARLCAAT-RTPLHLVGPLGFSLDDKYLKRA--GLDYWEHVELTLW 59 Query: 74 --FSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + ++ + H + T+AR + + + ++ +I G E W Sbjct: 60 KNWEEYRQNLDKSHRLIMTSARQGADYTRHSYSFQDH---------------LILGPETW 104 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + ++ +I P+ SLN+S A ++++E + Sbjct: 105 GLPEKITSQADHLIRIPIWGEVRSLNLSNAAGIILYEGYRQLGMPPAH 152 >gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium praevalens DSM 2228] Length = 161 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+LV+P++ +N G +AR N + L LV P S+K + D V+ + Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTN-STLHLVRPLGFSTSDKYLKRA--GLDYWDKLDVKYY 59 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL + D F YATT A + + +FG+E G Sbjct: 60 DNLTDFFIKNKDGRFFYATT---------------KAPNSYSDLEYEADDYFLFGKETAG 104 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ SLN+S +V ++++E + Sbjct: 105 LPESLLESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQ 145 >gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus weihenstephanensis KBAB4] gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] Length = 162 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR T+L L+ P +K + V+V Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKV 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N++ L E A ++ +FGRE Sbjct: 59 TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFNYSKREKDYYFVFGRETN 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira defluvii] gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira defluvii] Length = 154 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L LV P +K + S+ V+ + Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGAS-LHLVKPLGFTLEDKQLLRAGLDYHEFASITVYES 62 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E +A F +T R R + + + +FG E GL Sbjct: 63 WDECVARFTGARLFAVSTKGRQRY----------------DLVRYTEGDAFVFGPESRGL 106 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P SLN+S +V ++++E Sbjct: 107 PAEILGSVSEQQCLRVPMVPGSRSLNLSNSVAVVLYEAWRQ 147 >gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 154 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+L +P++ N G VAR + L LV + G+ ++ + A D + +R Sbjct: 3 IVLFEPEIPANTGNVARTCAVTG-STLHLVG-KLGFSTDDRQLKRAGLDYWHLLDIRYHD 60 Query: 76 NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L+E A+ F V + G N ++FG+E GL Sbjct: 61 SLEELWAL-----------YPEGVFHYVET---EGGRWYTEVAYGPNDFLVFGKETKGLP 106 Query: 134 NEEI-ALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 + I A ++ ++ P+ + SLN+S AV ++V+E + Sbjct: 107 KDVIEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147 >gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC 29799] gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC 29799] Length = 163 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 16/167 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+P++ +N G +AR ++L L+ P S++A + + + V+ NL Sbjct: 5 VLVEPEIPQNTGNIARTCAAT-RSRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVYENL 63 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE-- 135 ++ A R K + A + FG+E GL E Sbjct: 64 EDFFA------------RTGAKDLWLMTTKAPRSYAEAEFRDECWLFFGKETAGLPREFR 111 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + I P+ P SLN++ +V ++ +E + E Sbjct: 112 EAHR-DRCIRIPMRPDARSLNLANSVAIVTYEALRQLEFPGLSGEGE 157 >gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 162 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR T+L L+ P +K + V++ Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N++ L E A + ++ +FGRE Sbjct: 59 TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETN 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 163 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 20/169 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G + R L LV P EK + + Sbjct: 4 IVLVEPEIPYNTGAIGRTCVALGAA-LHLVGPMGFSIDEKQVRRA--GLDYWQHLNY--T 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E I D TA++ + K A+ + I FG+E GL E Sbjct: 59 FYENIVDF------TAKHPDIKPFYATTK--ALNTYAEVSYPSETWIFFGKESAGLPEEM 110 Query: 137 I----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + I P+ P SLN+S +V ++ +E S + Sbjct: 111 LLPFPERC---IRIPMYPQIRSLNLSNSVAIIAYEVARQHGFPSLQATG 156 >gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. JDR-2] gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. JDR-2] Length = 154 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72 I+LV+P++ N G +AR L LV P ++ + +A V + Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-AHLHLVRPLGFQTDDRTLKRAGLDYWHAVHV-EYHD 62 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F L++A + F YA+T + E F + +FG+E GL Sbjct: 63 SFKELQDANPNGRFFYASTRATKVYT--------------EFDFRDGD-FFVFGKETKGL 107 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I A + + P+ SLN+S + ++V+E + Sbjct: 108 PQELIDANLDTCMRMPMTGDVRSLNLSNSAAIIVYEALRQ 147 >gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus NVH 391-98] Length = 162 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 21/165 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR L L+ P +K + + V++ Sbjct: 2 GVNVVLYQPEIPANTGNIARTCAATGAG-LHLIRPLGFSTDDKMLKRA--GLDYWEHVKI 58 Query: 74 --FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++E D F Y T E A + +N +FGRE Sbjct: 59 TYYDSIEEFYEKNQDGEFFYLT------------KYGEKAHTAFDYSNPEKNYYFVFGRE 106 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++V+E Sbjct: 107 TNGLPANIIQENFDHCLRIPMTDKVRSLNLSNTAAILVYEAFRQQ 151 >gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum gryphiswaldense MSR-1] Length = 248 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 17/159 (10%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDS 70 AK P++IL N+G +AR M F L +L + + P PS+ A + +D Sbjct: 96 AKEPLVILDGIGNPHNLGAIARTMAFFGLGRLIVSDHPEQALPSDAAFRIAEGGLEWVD- 154 Query: 71 VRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V +NL +A+ L + T + K + + + + ++ G Sbjct: 155 VYQVANLGKALPRLKPHYQVIGTALGAHRSMKDTFS------------SNDKPLALVLGN 202 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL +A + I++ P + SLN+S +++ Sbjct: 203 EEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILIH 241 >gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus Desulforudis audaxviator MP104C] Length = 153 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR + L LV+P S + + + V + Sbjct: 4 VVLVEPEIPQNTGNIARTCAATG-SVLHLVHPLGFSVSNRYLKRAGLDYWHLVEVHHHPS 62 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E D F +AT R R P ++FG+E GL Sbjct: 63 FDEVCRRYPDRPFFFATARRGRRYT-DARYPD--------------GSFLVFGKETTGLP 107 Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + + + P SLN+S AV ++V+E + Sbjct: 108 AELLEANAEQCVRLPQREPARSLNLSNAVAVLVYEALRQQGFPG 151 >gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 6_1_27] gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. 6_1_27] Length = 161 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G +AR L L+ P +K + + V+V Sbjct: 3 IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E + YATT + E + + ++FG E G Sbjct: 60 ENIQELYEKYPNRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPETRG 104 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ SLN+S AV ++ +E M Sbjct: 105 LPESLLDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQ 145 >gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1] gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1] Length = 164 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73 +LV P++ +N G VAR T L + P +++ + V + Sbjct: 5 VLVAPEIPQNAGSVARLCAA-AKTPLHFIKPLGFSLADRYLKRA--GLDYWPHVNLTVWE 61 Query: 74 -FSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + A A + AT R P EA +L +FG E G Sbjct: 62 DFPSFAAARAGRRLVAATAGNRGHAAVPHHRFPFEADDIL------------LFGTESSG 109 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E +A ++ +++ P+ SLN++ A ++++E + Sbjct: 110 LSEEVLAAAHRLVTIPIWGQVRSLNVANAASVVLYEALSR 149 >gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032] gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC 7061] gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032] gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC 7061] Length = 157 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR N T L L+ P +K + V Sbjct: 2 GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWKYANV 58 Query: 74 F--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E A + F + + + ++ +FGRE G Sbjct: 59 VYHDSLDELFE---------AHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + I + + P+ SLN+S ++V+E + Sbjct: 110 LPKDLIERNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428] gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428] Length = 151 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G + R + T L LV P S+K + VRV + Sbjct: 4 VVLVEPEIPPNTGNIGRLCLATD-THLHLVKPLGFSLSDKELKRA--GLDYWKDVRV--S 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + E+ A+L A++ + L K +E+ G ++FGRE GL Sbjct: 59 VWESYAELQ-----AAQSADARYFYLTTKVQRPYWDEQFRDGD--FLVFGRETKGLPEPL 111 Query: 137 IALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + ++ P+ P SLN++ +V ++++E + Sbjct: 112 LESNRDRCLTIPMTPQTRSLNLATSVGIVLYEAVRQ 147 >gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] Length = 153 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L++P++ N G +AR T L L+ P EK + V+ V+ Sbjct: 3 IVLLNPEIPYNTGNIARTCVLTG-TGLHLIKPLGFSLDEKQIRRA--GLDYWKDVKLTVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E + + F +ATT + V + I+FG E G Sbjct: 60 DSLTELMESNKNAKFYFATTKTRQKYTDPVYREDDY---------------IVFGPESRG 104 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + EEI L N I+ P+ P SLN+S + ++++E + Sbjct: 105 VP-EEILLENKENCITIPMLPKGRSLNLSNSAAIILYEALRQ 145 >gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54] Length = 156 Score = 85.9 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P++ N G R N QL LV P + + VRV Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62 Query: 77 LKEAIADL----HFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+EA+ D IYA TT R+ P + +FGRE G Sbjct: 63 LQEALDDTGASASHIYALTTQAQRSVGDVRFEPGDV---------------FVFGRESAG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L+ E AL + P+ SLN+S AV + V+E Sbjct: 108 LSAEHHALFAPQQRLRLPMRTGQRSLNLSNAVAVTVFEAWRQQ 150 >gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium lentocellum DSM 5427] Length = 163 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ +N G +AR T L L+ P EK + + +V+ + + Sbjct: 4 IVLHEPEIPQNTGNIARTCAATGAT-LHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTYKD 62 Query: 77 LKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E + ++ +Y T ++R + V +E I+FG+E G+ Sbjct: 63 YEEFLEKNNYPKVYMATTKSRQTYTDVSYEEEC--------------YIMFGKETAGIP- 107 Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 EEI L N I P+ SLN+S +V ++++E + E Sbjct: 108 EEILLDNKETCIRVPMISEARSLNLSNSVAIVIYEALRQHQFEHLTKQGE 157 >gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 167 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 26/169 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P++ N G + R +L L+ P SEKA + V + Sbjct: 7 IVLFEPEIPSNTGNIGRTCVATG-ARLHLIEPLGFSLSEKAIKRA--GMDYWKELDVTRY 63 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + ATT + + P ++FG+E G Sbjct: 64 LDFEEFLEKNPGAKIYMATTKAPQTYTEVHYEPDCY---------------LMFGKESAG 108 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + EEI L++ ++ P+ SLN+S AV ++++E + + + K Sbjct: 109 IP-EEILLAHQETVVRIPMLGETRSLNLSNAVAIVLYEALRQNQFAQMK 156 >gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I] gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I] gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS] Length = 156 Score = 85.5 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P++ N G R N QL LV P + + V+V Sbjct: 4 VVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+A I+A T R R + L + F +V +FGRE GL Sbjct: 63 LPQALAATGAAAPRIFALTTRARTS-------------LADMAFQAGDV-FVFGRETAGL 108 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +AL + P+ P SLN+S AV + V+E S Sbjct: 109 SEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQS 150 >gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 154 Score = 85.5 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + D + Y +T + ++ N ++FG+E Sbjct: 59 KIYKDLNDFFEKNRDANVFYFSTKGKQYYTQAPYT---------------DNCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S AV ++++E + Sbjct: 104 TAGLPQWLIEQNIHKTYRIPMISDVRSLNLSNAVAIVLYEALRQ 147 >gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis DSM 16069] Length = 153 Score = 85.5 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ N G + R N QL L+ P +K + + +V Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIKPLGFEIDDKKMRRA--GLDYHEWAQVKTH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N +E + + ++ + + ++ F +I ++FG E GL Sbjct: 61 ENYQEFLNNEQPKRLFGLSTKAKHYFH--------------QIAYQDGDYLMFGPETRGL 106 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 N + + ++ P+ P SLN+S V ++ +E + Sbjct: 107 PNHILNDIGEQLLRIPMRPDSRSLNLSNTVAIVTYEVLRQ 146 >gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 162 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 21/165 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR T+L L+ P +K + V++ Sbjct: 2 GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58 Query: 74 --FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +++E D F Y T E A + +N +FGRE Sbjct: 59 TYYDSIEEFYEKNSDGEFFYLT------------KYGEKAHTQFDYSNVEKNYYFVFGRE 106 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + + P+ SLN+S ++++E Sbjct: 107 TNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151 >gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus curdlanolyticus YK9] Length = 155 Score = 85.1 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR T L LV P + + ++ + + Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFRTDDATLKRAGLDYWYAVNLTYYDS 63 Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E F YA+T N+ ++ + ++ +FG+E GL Sbjct: 64 FSEVEERFKGHRFFYASTRANKRY--------------SDFEYKDGDL-FVFGKETKGLP 108 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + A N +I P+ SLN++ + ++V+E + + Sbjct: 109 QELLDANPNQLIRMPMTDKVRSLNLANSAAIVVYEALRQT 148 >gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256] Length = 263 Score = 85.1 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 16/171 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 PQ G ++L Q N+G V R+ + Q+ L N S K + A Sbjct: 107 PQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRAGMGAH 166 Query: 66 CVID-SVRVF-SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++D RVF + +A D + A RN ++ ++ Sbjct: 167 FLLDIYSRVFLPHWLDAYQDKIWATALDGRNPSDLY--------------QLDLNAPCAW 212 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G++ E + + + P+ SLN++ A + ++E M I Sbjct: 213 VFGNEGSGVSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 263 >gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1] Length = 165 Score = 85.1 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+PQ+ +N G ++R +L LV P S+K + D + + + Sbjct: 6 IVLVEPQIPQNTGNISRTCAVTG-ARLHLVRPLGFEVSDKHLKRA--GLDYWDKLDITYY 62 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L + D HF Y TT + ++ I N +IFGRE G Sbjct: 63 DDLSDFFDKNKDGHFYYFTT---------------KGLHVHSDIDYPDNSYLIFGREDKG 107 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E + N P+ SLN+S +V + V+E + Sbjct: 108 LP-ESLLHDNPGFCARIPMRNELRSLNLSNSVAIAVYEVLRQW 149 >gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans 36D1] gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans 36D1] Length = 158 Score = 85.1 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 ++L P++ N G +AR T L L+ P +K + V + Sbjct: 6 VVLYQPEIPANTGNIARTCAGTG-TTLHLIRPLGFSTDDKMLKRA--GLDYWKHVNIVYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + E + +N+ +FGRE GL N Sbjct: 63 DSLEEFFE---------KNADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPN 113 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 114 DLIEKNKDRCLRIPMTDKVRSLNLSNTAAILVYEALRQQ 152 >gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+PQ+ +N G +AR +L LV P +K + + + Sbjct: 6 IVLVEPQIPQNTGNIARTCAATG-ARLHLVKPLGFAIDDKKLKRA--GLDYWHYLDITYY 62 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK+ A +F Y TT + + N+ V P N I+FGRE G Sbjct: 63 DGLKDFFAQNSGGNFYYFTT-KGQANYSEVAYPD--------------NAYIVFGREDAG 107 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L + + + P+ SLN+S V + +E + + Sbjct: 108 LPEDLLFHNPETCVRLPMRGGIRSLNLSNTVAVATYEVLRQWGFPA 153 >gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus anaerobius 653-L] Length = 168 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 26/166 (15%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+P++ N G + R N QL L+ P +K D + Sbjct: 14 PINIVLVEPEIPHNTGNIIRTCANTG-AQLHLIKPLGFSLDDKHLKR--CGLDYWDIADI 70 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F L+E + ++ YATT ++ + + ++FG+E Sbjct: 71 KYYDSFEELQEKYPEANYFYATTKTQKSY---------------ADVEYNEGCFLVFGKE 115 Query: 129 RWGLTNEEIALSNAII-SFPVNPLFPS--LNISQAVLLMVWECMEN 171 GL + I + P+ + + LN+S +V ++V+E + Sbjct: 116 TKGLPKDLIEKNEGHCIRIPMRGIEGARCLNLSNSVAIVVYEALRQ 161 >gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20] Length = 152 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R N + L LV+P + + A+ A D + + RV + Sbjct: 4 VIFFEPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 60 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E + + IYA T+ L ++ + ++FG E GL Sbjct: 61 TWQECLEQIPGRIYAFTS--------------HTERLYTQVDWRGDDALLFGPEPTGLPQ 106 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + +A + P+ SLN++ + + ++E + Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145 >gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 158 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + +++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEYANMQIWEN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +++ +ADL A+ + + + V ++ G E GL E Sbjct: 63 IEDCLADL----ASKGIGLDAIYPLTT---KGSETPHTSDLNRPVALLMGPETRGLP-EH 114 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 115 VRLMFPQKHWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 153 >gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] Length = 156 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 30/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ +N G +AR ++L LV P G+ E+ A D + + V+ Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPL-GFSIEEKYVKRAGLDYWPLLDLTVYD 62 Query: 76 NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL++ + F ATT R + N I+FG+E GL Sbjct: 63 NLEQFLEENKGKKFYLATTKAKRYYH---------------EVKYEDNSYILFGKETAGL 107 Query: 133 TNEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 I I P++ + SLN+S +V ++++E + Sbjct: 108 PKWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149 >gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf. saccharolyticum K10] Length = 180 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R T+L L+ P SEKA + D V V+ Sbjct: 3 IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRA--GLDYWDKLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ ++ + +RN + A + + I+FG E G+ Sbjct: 60 SDYQDFL------------DRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPE 107 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ SLN+S +V ++++E + Sbjct: 108 DILVQHQETCVRIPMWGDIRSLNLSNSVSIILYEALRQ 145 >gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 156 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E+ Sbjct: 63 IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EQ 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L + I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQDQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 163 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R T+L L+ P SEKA + D V V+ Sbjct: 3 IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRA--GLDYWDKLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ ++ + +RN + A + + I+FG E G+ Sbjct: 60 SDYQDFL------------DRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPE 107 Query: 135 EEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ SLN+S +V ++++E + Sbjct: 108 DILVKNQETCVRIPMWGDIRSLNLSNSVSIILYEALRQ 145 >gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753] gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753] Length = 168 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I++V+P++ +N G VAR +L LV P +K + + + + N Sbjct: 6 IVMVEPEIPQNTGNVARTCAATG-ARLHLVGPMGFTIDDKKLKRAGLDYWHLLDITYYEN 64 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E +F Y +T A + + N ++FG+E GL Sbjct: 65 LEEFFEKNKGGNFYYFST---------------KAPHRHTDLAYPDNCYLLFGKETAGLP 109 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + P+ SLN+S +V + V+E + Sbjct: 110 EKLLFDNPDTTVRIPMIDEARSLNLSNSVAVGVYEVLRQW 149 >gi|326563511|gb|EGE13770.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1] Length = 79 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ I++V L NIG ARA+ L L +VNPR + + +++A A + Sbjct: 6 LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64 Query: 68 IDSVRVFSNLKEAI 81 +D + ++K AI Sbjct: 65 LDKACITKDIKHAI 78 >gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense YUAN-3] Length = 169 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 17/168 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L++P++ +N G VAR L LV P + + + ++ + N Sbjct: 4 IALIEPEIPQNTGNVARTCAATG-AHLHLVKPLGFAIDDAKLKRAGLDYWHLLNITYYEN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + R A + + ++FG+E GL EE Sbjct: 63 LADFL-------------RRAPGPCFFFSSKAPRSYTDVHYPPDACLVFGKETAGLP-EE 108 Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + L++ + P+ LN+S AV + +E + S + E Sbjct: 109 LLLAHEDSAVRLPIRAEARCLNLSNAVAVGAYEALRQWDFSGLRADGE 156 >gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 156 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR ++L LV P EK + + + V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++ + F ATT + R + V N I+FG+E GL Sbjct: 64 LEQFLEQNKGKKFYLATT-KARKYYHDVKYED--------------NSYILFGKETAGLP 108 Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 I I P++ + SLN+S +V ++++E + Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149 >gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] Length = 155 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPSVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + K + +N + FG E Sbjct: 61 ENLEEFLNENIIHKNRFFFATT----KSQKPYFDVEFQ-----------KNDFLFFGSES 105 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL+ E + L+ I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLSMELMQLNWQNAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii L2-6] Length = 168 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+LV+P++ +N G VAR +L LV P G+ + + A D +D + + Sbjct: 9 IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHYLD-ISYY 65 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + + D F Y TT R V P ++FGRE GL Sbjct: 66 DSLDDFFSKNDGPFYYFTTKAPRRYT-DVAYPD--------------GAYLVFGREDAGL 110 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + ++ I P+ SLN+S +V + V+E + Sbjct: 111 P-EALLAADQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151 >gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65] gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65] Length = 154 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +PQ+ N G + R N QL L+ P EK + +V V+ + Sbjct: 4 IALFEPQIAPNTGNIIRLCANNGC-QLHLIEPMGFNLEEKKLRRAGLDYHEFANVSVYPD 62 Query: 77 ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 KEA+ D TT + + K P + ++FG E GL+ Sbjct: 63 YWAFKEAMKDKRIFACTTKGSGHYHKVKYQPDDV---------------LLFGAETHGLS 107 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E + + I P+ P SLN+S +V ++ E + S Sbjct: 108 DEVMESIDPSMRIRIPMLPDSRSLNLSNSVAIISLEAWRQNDFSGG 153 >gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2 [Nitrosomonas europaea ATCC 19718] Length = 154 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 IIL P++ N G + R N QL L+ P S++ + + R V Sbjct: 4 IILHQPEIPPNTGNIIRLCANTG-AQLHLIRPLGFDLSDRQLRRA--GLDYHEWARLTVH 60 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + D I+A T R A + ++ N +FG E GL Sbjct: 61 EDLASCLKLMDGCRIFAVTTR--------------ATHHHGKVAYTGNDVFLFGSETRGL 106 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I P+ SLN+S A ++++E Sbjct: 107 PAEVLENFPQDQRIRIPMLSASRSLNLSNAAAVIIYEAWRQ 147 >gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister microaerophilus UPII 345-E] gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 170 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G ++R +LT L LV P +K + + + Sbjct: 3 IVLVEPEIPGNTGNISRLCAAEHLT-LHLVEPLGFSIDDKHLKRA--GLDYWKFLDIHIH 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F ++K+ + F Y TT A + I ++ ++FG+E G Sbjct: 60 KNFESVKQMLKGKRFFYNTT---------------KAKHVYTDISYKEDDVLVFGKETKG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E + ++ I P+ SLN+S AV ++ E + + Sbjct: 105 LPEELLLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQT 146 >gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580] gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580] gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2] gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580] gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580] gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2] Length = 157 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR + T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + D H F + + + ++ +FGRE GL Sbjct: 62 DSLDE-LFDAH--------PEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E I + + P+ SLN+S ++V+E + Sbjct: 113 ELIEQNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N] gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 156 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 13/164 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +ILV P++ N G R N QL LV P + + ++V + Sbjct: 4 VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVHDD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+A AT A F L + + +FGRE GL+ E Sbjct: 63 LPAALA------ATGAPPERIF--ALT--TQGARSAAGMQYQRGDVFVFGRETAGLSPEH 112 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +AL + P+ P SLN+S AV + V+E + Sbjct: 113 VALFAPGQRLRLPMRPGQRSLNLSNAVAVTVFEAWRQQGYEGGE 156 >gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC 17982] gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC 17982] Length = 153 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 II +P++ N G R + L LV P G+ + A+ A D + V V Sbjct: 4 IIFWEPEIPGNTGAAIRLSACTG-SMLHLVKPL-GFDMDDAKLRRAGLDYHDLAHVMVHD 61 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+A++ ++A T A + + G++FGRE GL+ Sbjct: 62 SLDEALAEVPGRVWALTG--------------HATTMYSDVSYADGDGLLFGRESVGLSE 107 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + SLN++ + ++++E Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQ 146 >gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505] gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505] Length = 168 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R N + L LV+P + + A+ A D + + RV + Sbjct: 20 VIFFEPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 76 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E + + I+A T+ L ++ + ++FG E GL Sbjct: 77 TWQECLEQIPGRIFAFTS--------------HTERLYTQVDWRGDDALLFGPEPTGLPQ 122 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + +A + P+ SLN++ + + ++E + Sbjct: 123 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 161 >gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4] gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4] Length = 156 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR ++L LV P EK + + + V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKDVRRAGLDYWPLLDLTVYEN 63 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E + F ATT R + V E +IFG+E GL Sbjct: 64 LQEFLEKHKGKKFYLATT-RANKYYHEVKYEDE--------------AFLIFGKETTGLP 108 Query: 134 ----NEEIALSNAIISFPVNPL--FPSLNISQAVLLMVWECMEN 171 +E I P++ + SLN+S +V ++V+E ++ Sbjct: 109 QWLIDEYYEDC---IRIPMHEKILWRSLNLSNSVAIIVYEALKQ 149 >gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens 16/4] Length = 165 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 IIL +P++ N G + R T+L L+ P ++K + D + VF Sbjct: 4 IILHEPEIPANTGNIGRTCCATG-TRLHLIEPLGFVLTDKTVKRA--GMDYWDKLEVFRY 60 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + K D ATT R + + P I+FG+E G Sbjct: 61 DDWDDFKAKNPDAKIYMATTKAKRTHTEVNYEPDCY---------------IMFGKESAG 105 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ SLN+S +V ++++E + Sbjct: 106 IPEEILVDNEENC---VRIPMGHDIRSLNLSNSVAIILYEALRQ 146 >gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum reducens MI-1] Length = 152 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72 I+LV+P++ N G +AR + L LV P G+ ++ A D + + Sbjct: 3 IVLVEPEIPANTGNIARTCSVTGAS-LHLVEPL-GFSTDDRYLKRAGLDYWHLLDLHYHK 60 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ L++ + F Y TT R P A +N ++FG+E GL Sbjct: 61 SFAALQQQYPEGRFWYFTTKGGR--------PYHEASF-------EENDFLVFGKETAGL 105 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + + + P+ SLN+S +V + V+E + Sbjct: 106 PKELLAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEALRQ 145 >gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum acetoxidans DSM 771] gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum acetoxidans DSM 771] Length = 168 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 28/177 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G + R + + L LV P +K + + + + Sbjct: 3 IVLVEPEIPANTGNIVRTCAATS-SVLHLVRPLGFSTEDKYLKRAGLDYWYLVEIYYHDS 61 Query: 77 LKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 EA+ + +++ AR + G ++FG+E Sbjct: 62 F-EALKEKYPLGTFYYVSTKAAR------HYCDVEY-----------GPGDFLVFGKETR 103 Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GL E + +N+ + P+ SLN++ +V ++++E + + + N Sbjct: 104 GLP-ESLLQANSGNCVRIPMVSDARSLNLANSVAIVLYEALRQQAFAGLETAGRVNP 159 >gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662] gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662] Length = 166 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 19/171 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R L L+ P +EK + + VR + Sbjct: 4 IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFKLNEKMIKRA--GLDYWEHLDVRTY 60 Query: 75 SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N ++ + H IY T ++R + V + ++V ++FG+E G+ Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTY-----------GGADEDVYLMFGKESAGI 109 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + + P+ P SLN+S +V ++ +E + + + Sbjct: 110 PEEILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQGFDHFQREGQ 160 >gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 157 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 24/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ +AD + ++ T + +V + V ++ G E G Sbjct: 63 IEACLADLKSKGVEHVFPLTTKGSATPHTVDLNR--------------PVALLMGPETRG 108 Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E + L I P+ SLN+S A ++V+E Sbjct: 109 LP-EHVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N T L ++ P ++ + D +R + Sbjct: 36 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 92 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E +A V++ + ++ Q+ +FGRE GL Sbjct: 93 DHLDEFLAQCD-----------GSLHVISKFADQVYSDKDYNDRQSHYFLFGREDTGLP- 140 Query: 135 EEI---ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ ++ + P+N SLN+S AV ++V+E + Sbjct: 141 -ELFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 181 >gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552] gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552] Length = 246 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 16/174 (9%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y+ +L+N+ ++LV+P N+G + R M F L ++ P K +S Sbjct: 86 YSMELKNTNH---VVLVNPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFDPKVVRASMG 142 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A I + F + + NR+ + +L + A ++ +N + Sbjct: 143 AIFNI-NFEYFDTFDDYLHKYP--------NRDIYPLML---KGAKNIHLIEPDDKNYSL 190 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E GL +E + +I P + SLN+S A+ + ++ ++ S + Sbjct: 191 VFGNESSGLPDEFLNYGQSI-FIPHSDKIDSLNLSMALGITLYHFSKDIFKSKQ 243 >gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822] gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis] Length = 172 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 24/181 (13%) Query: 1 MTPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 M + + P ++LV P++ N G R N QL LV P + Sbjct: 1 MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDAR 59 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE 113 + V+V L +A+A ++A T R L + Sbjct: 60 LRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRA-------------PASLAD 106 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 F +V +FGRE GL+ +AL + P+ P SLN+S AV + V+E Sbjct: 107 MAFQAGDV-FVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165 Query: 172 S 172 S Sbjct: 166 S 166 >gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +++ K P+++++D N IG V R F + + L P+ + ++ A+ Sbjct: 16 EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124 +D V + + ++A+ L ++R + E +I+L+E + + ++ Sbjct: 76 NSVDWV-YYEDTRDALRGL--------KDRGFTICAIEQAERSIMLDELVVDKAKGYAVV 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G+ E + L + I P SLN+S A +++WE + Sbjct: 127 LGNEVKGVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQ 173 >gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50] gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50] Length = 172 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 24/181 (13%) Query: 1 MTPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 M + + P ++LV P++ N G R N QL LV P + Sbjct: 1 MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDAR 59 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE 113 + V+V L +A+A ++A T R L + Sbjct: 60 LRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRA-------------PASLAD 106 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 F +V +FGRE GL+ +AL + P+ P SLN+S AV + V+E Sbjct: 107 MAFQAGDV-FVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165 Query: 172 S 172 S Sbjct: 166 S 166 >gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. WH 8102] Length = 166 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 30/174 (17%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++L +PQ+ N G +AR F L L L+ P ++A + Sbjct: 1 MTIPEPNSSLRVVLYEPQIPPNTGNIARTCAAFRLP-LALIEPLGFCIDDRAVRRA--GL 57 Query: 66 CVIDSVR--VFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V+ + SNL + L H + + + L E F + Sbjct: 58 DYWPHVQLSIHSNLDHLLGQLPHPHRLIGCS-------------RHGGDSLGEFQFQHGD 104 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166 V ++FGRE GL + I++ P+ SLN+S A L+ + Sbjct: 105 V-LLFGREDNGLPGHVRDQCDRILTIPMPGGVDADGQGGVRSLNLSVACALVSY 157 >gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf. prausnitzii KLE1255] Length = 168 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 19/166 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CV 67 N I+LV+P++ +N G VAR +L LV P G+ + + A D Sbjct: 2 NEKPTLNIVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHY 59 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D + + +L E A N A + ++FGR Sbjct: 60 LD-ISYYDSLDEFFA-------------KNSGPYYYFTTKAPQRYTDVSYPDGAYLVFGR 105 Query: 128 ERWGLTNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL +A + P+ SLN+S +V + V+E + Sbjct: 106 EDAGLPEALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151 >gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 154 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N T L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + A+ TT +R + P + ++FG E G Sbjct: 61 KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDV---------------LLFGSETSG 105 Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI S+ I P+ SLN+S AV ++ +E Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 151 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV PQ+ N G +AR + T+L LV P ++ + V++ Sbjct: 2 PQLVLVHPQIPPNTGNIARTCAATD-TELHLVGPLGFEIGDRHLKRA--GLDYWPHVKLS 58 Query: 74 -FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L+ HF+ A T R SV + + ++FG E G Sbjct: 59 FYPDLE------HFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDW-----LLFGSETQG 107 Query: 132 LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171 L E + +A ++ P+N SLN+S + + ++E Sbjct: 108 LPAELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQ 148 >gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 154 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 25/163 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++L P++ N G V R N +L LV P G+P E A+ A + RV Sbjct: 3 TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPM-GFPLEDAKLRRAG-LDYHEYARVVV 59 Query: 75 -SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + ATT ++RI +FG E Sbjct: 60 HEDWDACLRTLQGRRIFAATT---------------KGATRHDRISYQPGDVFLFGPESR 104 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + +A + I P+ P SLN+S AV + V+E Sbjct: 105 GLPQDVLAALPAQQRIRLPMRPESRSLNLSNAVAVTVFEAWRQ 147 >gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 154 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N T L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + A+ TT +R + P + ++FG E G Sbjct: 61 KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDV---------------LLFGSETSG 105 Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI S+ I P+ SLN+S AV ++ +E Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. BL107] gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. BL107] Length = 166 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 30/174 (17%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + N + L +P++ N G +AR F L L L+ P +++ + Sbjct: 1 MSIVNPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSLRRA--GL 57 Query: 66 CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V+V F LK+ + + I + R L+E F + Sbjct: 58 DYWPHVQVSTHGSFDALKDGLLPHNRIIGCSRRG-------------GSCLSEFEFQHGD 104 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166 V ++FGRE GL + ++I++ P+ SLN+S A L+ + Sbjct: 105 V-LLFGREDTGLPEDIRDQCHSIVTIPMPGAAAPSGQGGVRSLNLSVACALVTY 157 >gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC61] gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. C56-T3] gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC52] gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC61] gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. C56-T3] gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC52] Length = 157 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TSLHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61 Query: 75 SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L E A + +FI R ++F + + +++ +FGRE Sbjct: 62 DSLDELFARFPEGEFYFITKFGRRYYDSF--------------DFSDTEKHIFFVFGRET 107 Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + + P+N SLN+S ++V+E + Sbjct: 108 TGLPKELLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151 >gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium TW-7] gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium TW-7] Length = 154 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N + L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGFS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +YA T + + ++FG E GL + Sbjct: 63 FEAYLEKCKPKKVYACTTK--------------GSQFHHEARYEAGDCLVFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E I + P+ P S+N+S AV + V+E + + Sbjct: 109 EMIQALPNEQRVRIPMQPNSRSMNLSNAVAVFVYESWRQLGFPNAQ 154 >gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 182 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N T L ++ P ++ + D +R + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E +A V++ + +E Q+ +FGRE GL Sbjct: 76 DHLDEFLAQCD-----------GSLHVISKFADRVYSDEAYNDRQSHYFLFGREDTGLPE 124 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + ++ + P+N SLN+S AV ++V+E + Sbjct: 125 PFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 164 >gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 156 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G + R N +L L+ P +K + + V Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F EA+A ++A T + R +V + +G ++FG E G Sbjct: 61 PNFEAFLEAVAP-TRVFACTTKGRTAHSAV------------QFAAGD--ALLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + P+ P S+N++ AV + V+E Sbjct: 106 LPIEIIESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQ 147 >gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 153 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 II +P++ N G R + L LV P G+ + A+ A D + V V Sbjct: 4 IIFWEPEIPGNTGAAIRLSACTG-SMLHLVEPL-GFDMDDAKLRRAGLDYHDLAHVMVHD 61 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L EA+A++ ++A T A + + G++FGRE GL+ Sbjct: 62 SLDEALAEVPGRVWALTG--------------HATTMYSDVSYADGDGLLFGRESVGLSE 107 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + SLN++ + ++++E Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQ 146 >gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908] gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC 51908] Length = 154 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N QL L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYNDLTRVTRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + +A+ + TT +R++ E F ++V ++FG E G Sbjct: 61 KDFESFLQAMEGKRIMACTTKGSRHHT--------------ELSFEKEDV-LLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + + P+ P SLN+S AV ++ +E Sbjct: 106 LPIEIIESLPTSQRLKIPMTPNSRSLNLSNAVAIISYEAWRQ 147 >gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 168 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 27/178 (15%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P++P A I+L P++ N G + R N +L L+ P +K Sbjct: 2 LAPFSP--HQDAVMLDIVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKR 58 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + + V F EA+A ++A T + R +V Sbjct: 59 A--GLDYHEFAEVKRWPNFEAFLEAVAP-TRVFACTTKGRTAHSAVQF------------ 103 Query: 116 FSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL E I + P+ P S+N++ AV + V+E Sbjct: 104 --AAGDALLFGPESRGLPIEIIESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQ 159 >gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 166 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R L L+ P +EK + + VR + Sbjct: 4 IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFKLNEKMIKRA--GLDYWEHLDVRTY 60 Query: 75 SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N ++ + H IY T ++R + V + ++V ++FG+E G+ Sbjct: 61 VNFEDFLEKNHHPKIYMATTKSRQTYADVTY-----------GGADEDVYLMFGKESAGI 109 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + P+ P SLN+S +V ++ +E + Sbjct: 110 PEEILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQ 150 >gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 156 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR + L LV P EK + + ++ V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SSLHLVKPLGFSIDEKYVKRAGLDYWPLLNLTVYDN 63 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++ + F ATT + + N I+FG+E GL Sbjct: 64 LEQFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108 Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 I I P++ + SLN+S +V ++++E + Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149 >gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B] Length = 156 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 ++L +P++ +N G VAR T L L+ P G+ A D ++ V+ Sbjct: 4 VVLFEPEIPQNTGSVARLCAATK-TPLHLIKPL-GFSLADRYLKRAGLDYWPHVNLTVWD 61 Query: 76 NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N A I ATTA NR + + + ++FG E GL Sbjct: 62 NFDAFRAARPQSRIVATTAGNRGHTPAAYHVFAYRP----------DDALVFGTESRGLP 111 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + A + P+ SLN++ A ++++E + Sbjct: 112 ESLLDTAGARLRIPIWGQVRSLNLANAASVVLYEALRA 149 >gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens DSM 20476] gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens DSM 20476] Length = 159 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 17/167 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++L +P++ +N G VAR T L LV P +E+ S D Sbjct: 2 SDKPHIHVVLFEPEIPQNTGNVARTCAVVGAT-LHLVEPMGFRLTERNLKRSGC--DYWD 58 Query: 70 SVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFG 126 V V ++++ ++ + N+ + E G +V ++FG Sbjct: 59 DVDVVKHASVEAFLSQ----------HGNDELHLFTSHTETCYTDVRYGEGGGDVYLVFG 108 Query: 127 RERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 RE G+ + +A + + P+ SLN+S AV + V+E + Sbjct: 109 RESRGIDEDVLAAHVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQW 155 >gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106] gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106] Length = 154 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 26/165 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 P ++L+ PQ+ N G VAR T+L LV P S++ + V + Sbjct: 2 PRVVLIQPQIPPNTGNVARTCAAT-RTELHLVGPLGFEISDRDLRRA--GLDYWPYVPLK 58 Query: 73 VFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + S++ EA H + R + N+ + + ++FG Sbjct: 59 IHSSI-EAFKHYHQYWGGRWIGFSKRGKQNY--------------AQFQYQADDWLLFGP 103 Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E GL+ E ++ + S P+ P SLN+S +V + + E Sbjct: 104 ETTGLSPELLSACDVTTSIPMREPGVRSLNLSVSVAIGLLEAGRQ 148 >gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 156 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR ++L LV P EK + + + V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++ + F ATT + + N I+FG+E GL Sbjct: 64 LEQFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108 Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 I I P++ + SLN+S +V ++++E + Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149 >gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus WK1] gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus WK1] Length = 160 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR T L L+ P +K + D V V + Sbjct: 8 VVLYQPEIPANTGNIARTCAATG-TSLHLIRPLGFSTDDKMLKRA--GLDYWDYVDVHYY 64 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E + F + T K+ + ++ +FGRE G Sbjct: 65 DSLQELFDKYKEGEFFFIT-----KFGKTYYTSFDY-------SDQTKDYFFVFGRETSG 112 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + I + P+N SLN+S ++V+E + Sbjct: 113 LPKDLIENNMERCLRIPMNEYVRSLNLSNTAAILVYEALRQQ 154 >gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942] gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942] Length = 157 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E A + F + + + ++ +FGRE GL Sbjct: 62 DSLEELFE---------AYQKGQFFLITKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 113 DLIEKNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046] gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046] Length = 159 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWET 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E +A+L A + N + + V ++ G E GL E+ Sbjct: 63 FDECLANL----ALKGVDINAIYPLTT---KGTETPHTSDLNRPVALLMGPETRGLP-EQ 114 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + I P+ SLN+S A ++V+E Sbjct: 115 VRMLFPKEHWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKP 157 >gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 156 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ +N G + R + L LV P +K D + Sbjct: 5 IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKR--CGLDYWDIADIQYY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E + + ++TT A + + +N I+FG+E G Sbjct: 62 DSFEELQEKYPNSKYFFSTT---------------KAKQSHSDVKYEENCFIVFGKETKG 106 Query: 132 LTNEEIALSNA--IISFPVN--PLFPSLNISQAVLLMVWECMEN 171 L E + +N I P+ SLN+S +V ++V+E + Sbjct: 107 LP-ETLLKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQ 149 >gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54] gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54] Length = 165 Score = 83.2 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 23/177 (12%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKAR 58 MT Y + I+LV+P++ N G +AR T L LV+P +K Sbjct: 1 MTTYRCPTVDYTSHLNIVLVEPEIPPNTGSIARLC---GATNAILHLVHPLGFSTDDKHL 57 Query: 59 SSSANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + V + + + ++ + K + Sbjct: 58 RRA--GLDYWKFVNIVYWESFEAFLSQCD----------KDNMYFFTTKTEKSYTEAKFK 105 Query: 117 SGQNVGIIFGRERWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 G +IFG+E GL + L + ++ P+ NP SLN++ ++++E M Sbjct: 106 QGD--FLIFGKETKGLPKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQ 160 >gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 165 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + +V ++ Sbjct: 15 IVLYQPEIPPNTGNIIRLCANTGFA-LHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 73 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ I ++A T + F + + ++FG E GL N Sbjct: 74 LEAYIESRQPKRVFACTTKGTTFF--------------AKAEYQKGDALLFGPETRGLPN 119 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P+ S+N+S AV + V+E Sbjct: 120 EVIQSLPPEQRVRIPMLADSRSMNLSNAVSVFVYEAWRQ 158 >gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp. Ellin185] gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp. Ellin185] Length = 171 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 22/180 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 I+LV PQ+ N G + R N + L LV P AR + V V Sbjct: 3 IVLVAPQIAPNTGNIIRLAANVGAS-LHLVEPLGFSMD--ARLLRRGGLDYHELADVHVH 59 Query: 75 SNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++ A A A TAR R + +V + ++FG E GL Sbjct: 60 ADVDAARAACPGRWLALTARARRRYDAVDYRDDD--------------VLVFGCEATGLP 105 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + +A ++ + P+ P SLN+ AV ++ +E + + A + Sbjct: 106 DYLLATFSADERLRIPMRPDNRSLNLGNAVAVVAYEAWRQLGFTGAADDGTGTLEALSAD 165 >gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8802] gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8801] gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 8802] Length = 152 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV PQ+ N G +AR T+L LV P S++ + ++ Sbjct: 4 IVLVHPQIPPNTGNIARTCAATE-TELHLVGPLGFELSDRYLKRA--GLDYWPYVNLHYH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L E + + + R ++ + +N ++FG E Sbjct: 61 KDLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTF--------------QENDWLLFGSETE 106 Query: 131 GLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171 GL + +A + P++ SLN+S +V + ++E Sbjct: 107 GLPKSVLENCDATLYIPMSQSKVRSLNLSVSVTIGLFEARRQ 148 >gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp. 'sapolanicus'] gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp. 'sapolanicus'] Length = 168 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+P++ +N G +AR + + L L+ P S+K + + + + Sbjct: 3 IVLVEPEIPQNTGNIARTCAVTD-SALHLIRPLGFSTSDKHLKRA--GLDYWHKLDINYY 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E D F YATT A + + +FG+E G Sbjct: 60 DSLDEFFKKNKDGRFFYATT---------------KAANSYHELDYQADDYFLFGKETAG 104 Query: 132 LTN----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ SLN++ +V ++++E + Sbjct: 105 LPETLLKDNLEYC---IRIPMKDSLRSLNLANSVSIIIYEALRQ 145 >gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 165 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + +L LV P +K + + V + Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGM-ELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 H + +T AR+ ++ +I ++FG+E GL Sbjct: 62 FAALHQQYHEHTFYFCSTKARHSY------------CDISYKIDD----FLVFGKESAGL 105 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +N I P+ SLN+S AV ++ +E + Sbjct: 106 PESLLTDYEANTI-RIPMREEARSLNLSNAVAVVAFEALRQ 145 >gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC 35185] gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC 35185] Length = 160 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 26/176 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P++ N G +AR + +L LV P +K + + V N Sbjct: 3 IVLIEPEIPGNTGNIARLCAVSGI-ELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHEN 61 Query: 77 LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131 E + A F Y + R+ + + ++ ++FG+E G Sbjct: 62 FSEVLRLFAGRQFYYCSKKAPRSY---------------DAVSYTEDDFLVFGKETAGIP 106 Query: 132 --LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 L E I P+ SLN+S A ++ +E M ++ + Sbjct: 107 EALLEEHWEDC---IRIPMRLGARSLNLSSAAAIVAYEAMRQIGFPGLESSGHWHE 159 >gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC 29453] Length = 264 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 14/165 (8%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 ++L + Q NIG + R+ + Q+ L S K ++ A ++ Sbjct: 109 PISDDCVVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLRAAMGAHFLLKI 168 Query: 71 VRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L E+ + + AT +NNF ++++ + V +FG E Sbjct: 169 HERVDLLDWRESFSG--DVLATALTEKNNFSLY----------DKQLDLTKPVAWVFGNE 216 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +A +NA + P+ SLN++ A + ++E M + Sbjct: 217 GSGVSADMLAQANATVKIPMIGATESLNVAMAATICLFEQMRQRL 261 >gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus] Length = 144 Score = 82.8 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 26/159 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G +AR T L LV P +K + +V + Sbjct: 5 IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRA--GLDYWYAVHIEYH 61 Query: 74 --FSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F L++ + F Y +T A R + F + ++FG+E Sbjct: 62 DSFEELQQKYPEGRFFYTSTKATKRY---------------CDIAFQDGD-FLVFGKETK 105 Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL E +A + ++ I P+ SLN+S + ++V+E Sbjct: 106 GLPPELLAANPDSCIRMPMTDKVRSLNLSNSAAIIVYEA 144 >gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor bescii DSM 6725] Length = 154 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L E + Y +T + + AP E N ++FG+E Sbjct: 59 KIYKDLNEFFEKNRGANVFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147 >gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 154 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N T L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + A+ TT +R + P + ++FG E G Sbjct: 61 KNYQDFLAAVPGKRIFACTTKGSRPYDQPAYQPGDV---------------LLFGSETSG 105 Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI S+ I P+ SLN+S AV ++ +E Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147 >gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 295 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 35/197 (17%) Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQ-LRL---VNPRDGWP 53 P A Q+ + P V++LV+P+ N+G RA F + L L V+P Sbjct: 114 PQALGPQDDWEKPGHAPLVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPH---- 169 Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAI 109 + KA SSA + + VR ++ A+ L ++ATTA P + A Sbjct: 170 NPKAARSSAGSLFAVPVVR-ERDVAAALGQLRDAGLLLFATTA-------DADLPLDEAE 221 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLM 164 L +R +FG E GL ++ I+ P+ P SLN++ A + Sbjct: 222 SLLQR-----PCAWLFGNEASGLPEPAAQAADRRIAVPMRPTPGFAPIESLNLAVAAGIC 276 Query: 165 VWECMENSIVSSEKNVK 181 ++E + + V Sbjct: 277 LYETARQRSRQAPRPVG 293 >gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 161 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 25/177 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 P I+LV+P++ N G +AR T L LV P S++ + V Sbjct: 2 PSIVLVNPEIPPNTGNIARTCAATE-TPLHLVMPLGFELSDRYLKRA--GLDYWPYVDLH 58 Query: 73 VFSNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ++++ A A + +A+ + + ++ ++FG E Sbjct: 59 IHQSIEDFWQHAQAKGGKLIGYSAKATAVYTQLTYRRDDW--------------LLFGCE 104 Query: 129 RWGLTNEEIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 GL+ E + + + + P++ SLN+S + ++E + + S E++ K Sbjct: 105 SKGLSAEVLEQCDVVTTIPMSDRRHVRSLNLSVCAAVGLFEAIRQTDNSLEQSDKRA 161 >gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 154 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFDWDDKRVRRAGLDYHEFAHVKRHAS 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + D + ++A T + + V + +IFG E GL + Sbjct: 63 LDAYLEDAKPNRVFACTTKGKAFHSDV--------------SYQKGDALIFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + P+ P S+N+S AV + V+E Sbjct: 109 DYIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147 >gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 155 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++LV+PQ+ N G +AR N T+L LV P S++ + V++ Sbjct: 4 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLH 60 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + NL++ ++ + +L +N ++FG E GL Sbjct: 61 YYENLEQFVSF----------QKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGL 110 Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 ++ + ++ P+ +P SLN+S +V + ++E + Sbjct: 111 PDKFREQCDQMLYIPMPHPQVRSLNLSVSVAIGLFEALRQ 150 >gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC 43531] gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC 43531] Length = 165 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G +AR + +L LV P +K + + V + Sbjct: 3 IVLVEPEIPGNTGNIARLCAGTGM-ELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ + F + +T S I + ++FG+E GL Sbjct: 62 FA-ALHQQYYEHTFYFCST----KAHHSYCD-----------ISYKTDDFLVFGKESAGL 105 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +N I P+ SLN+S AV ++ +E + Sbjct: 106 PESLLTDYEANTI-RIPMREEARSLNLSNAVAVVAFEALRQ 145 >gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola AmH] gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola AmH] Length = 152 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +PQ+ N G + R N +L +V P SEKA + D + V+ Sbjct: 4 IVLFNPQIPPNTGNIGRLCVNAG-AKLHIVKPIGFDISEKAVKRA--GLDYWDKLDLTVW 60 Query: 75 SNLKEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + + +ATT ++ F+ P + IIFG E G Sbjct: 61 ESTDEFLKHVDTSRCFFATTKTDKPYFEVEYKPGDY---------------IIFGSETKG 105 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ SLN++ + ++++E + Sbjct: 106 IDENILRQNFDNCITIPMTKEGRSLNLAVSTGIILYEAIRQ 146 >gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4] Length = 160 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 15/162 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR + T L L+ P +K + + V + Sbjct: 5 GVHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTEDKMLRRA--GLDYWEHVTI 61 Query: 74 F--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E F + E + ++ IFGRE G Sbjct: 62 VYYDSLDEFFE---------KNAGGEFFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTG 112 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + I + + P+N SLN+S ++V+E + Sbjct: 113 LPKDVIENNKDRALRIPMNENVRSLNLSNTAAILVYEALRQQ 154 >gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029] gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183] gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029] gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183] gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae LPCoLN] Length = 156 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 28/173 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 ++L P + +N G + R +L LV P ++K + D ++ V Sbjct: 2 RVVLHCPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWDKLQLTV 58 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++EA+ D+ I+ + + ++ P + +FG E G Sbjct: 59 VDSIEEALHDVPEDQIFCLSTKGSASYTEFSLP--------------SSGTYVFGSESKG 104 Query: 132 LTNEEIAL----SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 L E + + P+ SLN++ +V ++++E + V+ +KN Sbjct: 105 LPKEILKKYYKNC---LRIPMQQDIRSLNLATSVGIVLYEVVRQKTVALQKNP 154 >gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125] gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125] Length = 157 Score = 82.4 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 19/168 (11%) Query: 14 GPVIILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G I+L P++ N G +AR N T+L L+ P ++ + +V Sbjct: 2 GLHIVLYQPEIPANTGNIARTCAGTN---TELHLIRPLGFSTDDRMLKRAGC--DYWPNV 56 Query: 72 RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + ++ E ++AT F + K A + ++ +FGRE Sbjct: 57 NIHYYDSVDE-------LFATFPDGEFYFIETVGSKNYADF--DYSDGSKDHLFVFGRET 107 Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL N+ I + P SLN+S ++++E + + Sbjct: 108 TGLPNDLIEQHLDRCFRIPQTDKVRSLNLSNTAAIVIYEAIRQQGFAG 155 >gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] Length = 260 Score = 82.4 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 16/171 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 PQ G ++L Q N+G V R+ + Q+ L N S K + A Sbjct: 104 PQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLRAGMGAH 163 Query: 66 CVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +++ ++S +L + + TA + N + ++ Sbjct: 164 LLLN---IYSRVSLPQWLDTYQDKIWATALDGRNPSDLY-----------QLDLNAPCAW 209 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G++ E + + + P+ SLN++ A + ++E M I Sbjct: 210 VFGNEGSGVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 260 >gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208] gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3] Length = 157 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR + T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E A + F + T + K + + ++V +FGRE G Sbjct: 62 DSLDELFEAYENGKFFFIT----KFGQKPHTSFDYSNTE--------EDVFFVFGRETSG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E I + + P+ SLN+S ++V+E + Sbjct: 110 LPKELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N T L ++ P ++ + D +R + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E +A V++ + ++ Q+ +FGRE GL Sbjct: 76 DHLDEFLAQCD-----------GSLHVISKFADQVYSDKDYNDRQSHYFLFGREDTGLPE 124 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + ++ + P+N SLN+S AV ++V+E + Sbjct: 125 PFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 164 >gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900] Length = 157 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCLADLK------AKGVEHIFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046] Length = 157 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V V Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWEHVNVV 59 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L++ I +++ ++ + ++ S +++ +FGRE G Sbjct: 60 YHDSLEDFIE----------YSKDGDVYLIETYSDEPFTTHDFSNSERDLYFMFGRETTG 109 Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E ++ + P + SLN+S ++++E + Sbjct: 110 LPKEFAKERADMCLRIPQSDHIRSLNLSNTAAIVIYEVLRQQ 151 >gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150] gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150] Length = 148 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 22/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L P++ N G + R N QL L++P EKA + + + + Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFSLQEKALRRA--GLDYHEWACISQY 60 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N I IYA +A + V E +FG E GL Sbjct: 61 ENWDTFILQHQQKQIYACSASAEKCYSKVQYASEDM--------------FLFGPESNGL 106 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + ++ P+ SLN+S AV ++++E Sbjct: 107 PKEIVQKFTSL-FIPMREHNRSLNLSNAVAVILYEAWRQ 144 >gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 154 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N T L L+ P EK + D +V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLAKVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + AI TT +R + P + ++FG E G Sbjct: 61 KNYQDFLAAIPGQRIFACTTKGSRPYDQPTYQPGDV---------------LLFGSETSG 105 Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + S+ I P+ SLN+S AV ++ +E Sbjct: 106 LPDAIRNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147 >gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 156 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 28/167 (16%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 ++LV+P++ +N G +AR ++L LV P SEK S + Sbjct: 2 PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRS--GLDYWPYLDL 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V+ N++E + + ATT + + I+FG+E Sbjct: 59 KVYENIEEFLESTKGSKYYLATT---------------KGKHFYHEVKYEDDSYILFGKE 103 Query: 129 RWGLTNE--EIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMEN 171 GL E+ + I P+N SLN+S +V ++V+E ++ Sbjct: 104 SAGLPQWLREMYE-DDCIRIPMNEVKAERSLNLSNSVAILVYEALKQ 149 >gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6014059] gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii ACICU] gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2] gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii TCDC-AB0715] gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6014059] Length = 157 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685] Length = 261 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L + KG ++L Q N+G V R+ + + L S K + Sbjct: 103 PLGRTLPD--KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGM 160 Query: 63 NADCVIDSVRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A ++D ++S +L+ +A ++AT R +E VL G Sbjct: 161 GAHFLLD---IYSQADLEIWLAHYEDRVFATALR-----------EEKQAVLYGEDLCG- 205 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G+ + ++ + P+N SLN++ A + ++E M Sbjct: 206 PTAWVFGNEGAGVGKAVLERADKCVRIPMNDATESLNVAMAATICLFEQMRQRAA 260 >gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 157 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC 39073] gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC 39073] Length = 155 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ +N G +AR T L L++P EK + + V + Sbjct: 5 VVLYQPEIPQNTGNIARTCALTG-TFLHLIHPLGFRLDEKHLKRA--GLDYWEEVNILEH 61 Query: 75 SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 S +EA D + Y +T R K P + ++FG E G Sbjct: 62 STWAAFREAYPDANCYYLSTKGQRRYTKVDYRPDDF---------------LVFGPETRG 106 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + ++ P+ P SLN++ +V ++++E + Sbjct: 107 LPASILEPAGDRVLRVPMRPGLRSLNLANSVAIVLYEALRQ 147 >gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42] gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42] Length = 157 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 ++L P++ N G +AR + T L L+ P +K + + V+V Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVKVVYH 61 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E A + F + T + K + + ++ +FGRE G Sbjct: 62 DSLEELFEAYENGKFFFIT----KFGQKPHTSFDYSNTE--------EDFFFVFGRETSG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E I + + P+ SLN+S ++V+E + Sbjct: 110 LPKELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis M50/1] gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis XB6B4] Length = 167 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P EK+ + + V Sbjct: 6 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRA--GMDYWSELDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E ATT + V + + I+FG+E G Sbjct: 63 VNWDDFCEKNPGAKIYMATT-----KGRHVYT----------EVSYEPDCYIMFGKESAG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + EEI + + + P+ SLN+S +V ++++E + + K E Sbjct: 108 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMKLQGE 159 >gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha14] gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha14] Length = 154 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V+ Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + A+A I+A T K + P E A + ++FG E G Sbjct: 61 ENFDDCLKALAG-RRIFALT------TKGTVRPDETAFQ--------KGDVLLFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + I P+ P S+N+S V ++++E Sbjct: 106 LPADILDSLPAAQKIRLPMQPGCRSMNLSNTVAVILFEAWRQ 147 >gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 164 Score = 82.0 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L++P++ N G + R T+L L+ P ++K + D V V+ Sbjct: 3 IVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFKLNDKLIKRA--GLDYWDKLDVNVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ ++ + +RN + + + + + ++FG+E G+ Sbjct: 60 SDYQDFL------------DRNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPE 107 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ SLN+S +V ++++E + Sbjct: 108 EILLENQDCCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145 >gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1] gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1] Length = 157 Score = 82.0 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5] Length = 166 Score = 82.0 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R T+L L+ P +EKA + + + V Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRA--GMDYWEHLDVTRY 62 Query: 77 L--KEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L ++ + YATT A + + I+FG+E G Sbjct: 63 LDYEDFLKKNPGAKIYYATT---------------KAPQTYTDVQYEDDCFIMFGKESAG 107 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + + P+ SLN+S +V ++++E + Sbjct: 108 IPEDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQ 148 >gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 155 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630] gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42] gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255] gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196] gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291] gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58] gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile] gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196] gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291] Length = 156 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ +N G + R + L LV P +K D + Sbjct: 5 IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKR--CGLDYWDIADIQYY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E + + ++TT A + + +N I+FG+E G Sbjct: 62 DSFEELQEKYPNSKYFFSTT---------------KAKQSHSDVKYEENCFIVFGKETKG 106 Query: 132 LTNEEIALSNA--IISFPVN--PLFPSLNISQAVLLMVWECMEN 171 L E + +N I P+ SLN+S +V ++V+E + Sbjct: 107 LP-EPLLKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQ 149 >gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 8 VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E A + F + + + ++ +FGRE GL Sbjct: 65 DSLEELFE---------AYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 115 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 116 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 154 >gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. SMY] gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642] Length = 157 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E A + F + + + ++ +FGRE GL Sbjct: 62 DSLEELFE---------AYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 171 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P EK+ + + V Sbjct: 10 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRA--GMDYWSELDVTTY 66 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E ATT + V + + I+FG+E G Sbjct: 67 VNWDDFCEKNPGAKIYMATT-----KGRHVYT----------EVSYEPDCYIMFGKESAG 111 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + EEI + + + P+ SLN+S +V ++++E + + K E Sbjct: 112 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMKLQGE 163 >gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 155 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-VELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 153 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R + L L+ P G+ + A+ A D + V V Sbjct: 4 VIFWEPEIPGNTGAAIRLSACTG-SMLHLIKPL-GFDMDDAKLRRAGLDYHDLAHVTVHE 61 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL EA+ + ++A T A ++ + G++FGRE GL++ Sbjct: 62 NLDEALDQVPGRVWAFTG--------------HAHTMHSEVAYADGDGLLFGRESVGLSS 107 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A ++ + SLN++ + + ++E Sbjct: 108 EAMAHRRVEDLVRIHMVKGVRSLNLANSASIALYEAWRQ 146 >gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5] gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto BEST195] gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5] Length = 157 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E A + F + + + ++ +FGRE GL Sbjct: 62 DSLEELFE---------AYEKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kronotskyensis 2002] gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor lactoaceticus 6A] gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor lactoaceticus 6A] gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kronotskyensis 2002] Length = 154 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + + Y +T + + AP E N ++FG+E Sbjct: 59 KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147 >gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 253 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 20/156 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P N+G + R M F + L L+ P + +S A ++ F++L+ Sbjct: 113 LVNPSDNGNVGTIVRTMLGFGVRDLALIAPAVDLFNPHVVRASMGATFAVNFA-YFASLE 171 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +Y R L P A L E F ++FG E GL E Sbjct: 172 --------VY------RAAHAHRLYPFMLGGAKRLGEVRFEAPYT-LVFGPEGAGLP--E 214 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P +PL SLN++ AV + ++E + Sbjct: 215 AYRAFESVQIPQSPLVESLNLAVAVGVALYEAARET 250 >gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 5 VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + + F + + + ++ +FGRE GL Sbjct: 62 DSLEELFEEYQ---------KGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I + + P+ SLN+S ++V+E + Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151 >gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 155 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. doylei 269.97] Length = 155 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F + +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSRKAYFNTEF---------------QKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWKNAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 154 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + + Y +T + + AP E N ++FG+E Sbjct: 59 KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMINDVRSLNLSNSVAIVLYEALRQ 147 >gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 166 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P SEKA + + V Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + E YATT A + ++ I+FG+E G Sbjct: 63 LDFEDFLEKNPGAKIYYATT---------------KAPQTYTDVHYEEDCYIMFGKESAG 107 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + + P+ SLN+S +V ++++E + Sbjct: 108 IPEDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQ 148 >gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275] gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275] Length = 156 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+P++ N G + R +L LV P ++K D V+++ Sbjct: 5 IVLVEPEIPHNTGNIIRTCAVTG-AKLHLVKPLGFELTDKHLKR--CGLDYWDIADVKIY 61 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +E D ++ T+ R + + ++FG E G Sbjct: 62 ENFEELEAQYPDAQYVLGTSKVKRTHT---------------DVEYKDGCFLVFGSETKG 106 Query: 132 LTNEEIAL-SNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 L+ E I P+ LN+S AV +M +E + Sbjct: 107 LSKEIIERHIEDCARIPMLDLERARCLNLSNAVAVMTYEALRQ 149 >gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC 43243] gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC 43243] Length = 165 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R +L L+ P +EK + D V V+ Sbjct: 4 IVLHEPEMPANTGNIGRTCVAAG-ARLHLIEPLGFHINEKMVKRA--GLDYWDKLDVTVY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + ATT + + + I+FG+E G Sbjct: 61 DNYEDFLEKNPGAKIYMATT----KAPHTYCDVRYE-----------DDCYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + I P+ SLN+S +V ++++E + Sbjct: 106 IPEDILVQHPDTAIRIPMIGDIRSLNLSNSVAIVLYEALRQ 146 >gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor hydrothermalis 108] gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor hydrothermalis 108] Length = 154 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 SINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + + Y +T + + AP E N ++FG+E Sbjct: 59 KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147 >gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC 23834] gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC 23834] Length = 179 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L P++ N G + R N L LV P G+P + A+ A + R+ Sbjct: 29 IVLYQPEIPPNTGNIIRLCANSG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFARISLH 85 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +A + I+A T + R + A + + +FG E GL Sbjct: 86 ETFEDCLAALEGRRIFALTTKGRTRP-------DQAEFRPDDV-------FLFGPETRGL 131 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + N + P+ P S+N+S V +M++E Sbjct: 132 PAAILERLPENQKLRLPMLPGSRSMNLSNTVAVMLYEAWRQ 172 >gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 181 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ +A +++ I E Q +FGRE GL Sbjct: 76 DSLEDFVAQCQ-----------GKLHLISKFADKIYSEETYADDQPHYFLFGREDTGLPE 124 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 125 AFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQ 164 >gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 181 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L +PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 19 VVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWDKLDVRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + +++ + +ER G+N +FGRE GL Sbjct: 76 DSLDDFVEKCD-----------GKLHLISKFAETVYSDERFDDGENHYYLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + + P+N SLN+S V ++V+E + Sbjct: 124 ETFMRKHPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164 >gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12J] gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp. 5_7_47FAA] Length = 156 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +ILV+P++ N G V R N QL L+ P G+P E AR A + RV Sbjct: 4 VILVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAG-LDYHEYATMRVH 60 Query: 75 SN----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129 ++ L++A D ++A T R F SV P + +FG E Sbjct: 61 ADWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDW---------------FVFGSET 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E E ++ I P+ P SLN+S V ++V+E Sbjct: 106 RGLSEERREWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium papyrosolvens DSM 2782] Length = 164 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV+P++ +N G + R T L LV P +K + D R + Sbjct: 5 IVLVEPEIPQNTGNIVRTCAATG-TVLHLVGPLGFSIEDKYLKRA--GLDYWDEADVRYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +N+ E F Y+TT K+V + + I+FG+E G Sbjct: 62 NNINEFFEKFPGKTFYYSTT-------KAVNNYCDVQFE--------DDSFILFGKETAG 106 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L EE+ N I P+ SLN+S +V ++++E + Sbjct: 107 LP-EELLRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEALRQQ 148 >gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 155 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 21/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R N + L LV+P + + A+ A D + + RV + Sbjct: 7 VIFFEPRIPGNSGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 63 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +E + + I+A TA L + + ++FG E GL Sbjct: 64 SWQECLEQVPGRIFAFTA--------------HTSQLYTEVEWRGDDALLFGPEPTGLPE 109 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E + + + P+ SLN++ + + ++E Sbjct: 110 EIMEDPRVSGRVRIPMMEGNRSLNLANSAAVGLYEAWR 147 >gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1] gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1] Length = 155 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N QL L+ P +K + V++ + Sbjct: 5 IVLYQPEIPPNTGNIIRLCANSG-AQLHLIKPLGFVLDDKRLRRAGLDYHEWARVQIHES 63 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E + F +T + +I G E GL Sbjct: 64 FTEFLENGKVGRCFAVSTKGAVGYHTPHYQD----------------GDALILGPETRGL 107 Query: 133 TNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI +A I P+ SLN+S A +M++E Sbjct: 108 P-EEIRKHPRVSACIRIPMMENSRSLNLSNAAAIMLYEAWRQ 148 >gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 198 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 36 VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 92 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ +A +++ I E Q +FGRE GL Sbjct: 93 DSLEDFVAQCQ-----------GKLHLISKFADKIYSEETYADDQPHYFLFGREDTGLPE 141 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 142 AFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQ 181 >gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701] Length = 161 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 21/165 (12%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 P ++L PQ+ N G VAR +L L+ P E+ + V Sbjct: 5 PRVVLFQPQIPPNTGNVARTCAATG-AELHLIEPLGFSLDERQLKRA--GLDYWPWVPLH 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + A +A R +LA A + + ++FGRE GL Sbjct: 62 VHPGFE----------ALSAEQRRRGGRLLALSSQADQPYQHCRFCSDDWLLFGRESDGL 111 Query: 133 TNEEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171 E + ++ ++ P+ SLN+S +V ++++E + Sbjct: 112 PPELLEQADMRLTIPMPGSVRHGGGVRSLNLSVSVAVVLFEALRQ 156 >gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7] gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7] Length = 166 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P++ N G V R N + L LV P +K + +++V ++ Sbjct: 14 IVLVSPEIPPNTGNVIRLAANTGAS-LHLVRPLGFELDDKKLKRAGLDYHEWAAMQVHND 72 Query: 77 LKEAIA----DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L A+ D YA TT +R ++ E F +V +FGRE G Sbjct: 73 LDAALNIIGGDPSRRYALTTKGSR--------------LMAEFSFKPGDV-FVFGRETAG 117 Query: 132 LTNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L+ ++A + + P+ P SLN+S AV + V+E + + Sbjct: 118 LSPGQLACFPQAQRL-RLPMMPQQRSLNLSNAVAVTVFEAWRQAGYAGG 165 >gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 156 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ +N G +AR ++L LV P EK + + + V+ N Sbjct: 5 VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ + F ATT + + N I+FG+E GL Sbjct: 64 LERFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108 Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 I I P++ + SLN+S +V ++++E + Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149 >gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia R551-3] gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia R551-3] Length = 159 Score = 81.3 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 15/171 (8%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N+A +IL P++ N G V R N QL LV P +K + Sbjct: 2 NAAPQFHVILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYS 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++V +L A+A R K + A A V + + +FG E Sbjct: 61 RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFDDGDAFLFGPES 108 Query: 130 WGLTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + AL + + P+ P SLN+S V ++++E + + Sbjct: 109 RGLPQDVLDALPDGHRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGQ 159 >gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 153 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 12/158 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV PQ+ N G +AR T+L LV P S++ + + ++ Sbjct: 2 IRLVLVHPQIPPNTGNIARTCAATA-TELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL E +H R SV + E ++FG E GL Sbjct: 61 PNL-EIFEQVHQKIG----GRKIGFSVSGQENFLKFQFEVGDW-----LLFGSETDGLPA 110 Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 +A +A + P+ P SLN+S +V + ++E Sbjct: 111 NVLASCDATVYIPMAQPKVRSLNLSVSVAVGLFEAKRQ 148 >gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens ATCC 27750] gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens ATCC 27750] Length = 165 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ N G + R +L L+ P ++K + D + V + Sbjct: 4 IVLHEPEMPANTGNIGRTCVATG-ARLHLIGPLGFKINDKMLKRA--GLDYWDKLDVTEY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A ATT A + ++ I+FG+E G Sbjct: 61 DDYNDFLAKNPGAKVYMATT---------------KAHKTYTEVNYEEDCYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + I P+ SLN+S +V ++++E + Sbjct: 106 IPEEILVDNEDTCIRIPMIGDIRSLNLSNSVAIVLYEALRQ 146 >gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574] Length = 178 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + N+G V R+ F + + L P+ + ++ Sbjct: 13 SVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + +D + F+ +EA+ AD +F+Y S+ + + + G Sbjct: 73 GGEDSVDW-KYFATTEEAVNQLKADGYFVY-----------SIEQVEGSTKLQRLETGQG 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 Q ++FG E G++ + L + + P SLN+S +++WE ++ Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172 >gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 154 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYA-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + +YA T + + ++FG E GL + Sbjct: 63 FEDYLEKCKPKKVYACTTK--------------GSQFHHEASYEAGDCLVFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E I + + P+ S+N+S AV + V+E + + Sbjct: 109 EMIQALPNDQRVRIPMQANSRSMNLSNAVAVFVYESWRQLGFPNAQ 154 >gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC BAA-613] gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC BAA-613] Length = 168 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 16/158 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L++P++ N G + R T+L L+ P +EKA + D V V+ Sbjct: 4 IVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRA--GLDYWDKLDVTVY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ K+ + RN ++ A + + G + ++FGRE G+ Sbjct: 61 SDYKDFLE----------RNPQASGNMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPE 110 Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + I P+ SLN+S + ++++E + Sbjct: 111 EILVHNEDHCIRIPMWGDIRSLNLSNSAAIVLYEALRQ 148 >gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor obsidiansis OB47] gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor obsidiansis OB47] Length = 154 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + + Y +T + + AP E N ++FG+E Sbjct: 59 KIYRDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPKWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEVLRQ 147 >gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 155 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10] gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10] Length = 164 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV+P++ +N G + R + L LV P +K + + R + Sbjct: 5 IVLVEPEIPQNTGNIVRTCAATG-SVLHLVGPLGFSIEDKYLKRA--GLDYWNEADVRYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +NL E F Y+TT + E + I+FG+E G Sbjct: 62 NNLDEFKKKNVGKTFYYSTT---KAVNNYCNVNFED------------DCFIVFGKETAG 106 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L EE+ N I P+ SLN+S + ++++E + Sbjct: 107 LP-EELLKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQ 148 >gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17] gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17] Length = 178 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + N+G V R+ F + + L P+ + ++ Sbjct: 13 SVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + +D + F+ +EA+ AD +F+Y S+ + + + G Sbjct: 73 GGEDSVDW-KYFATTEEAVNQLKADGYFVY-----------SIEQVEGSTKLQRLETEQG 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 Q ++FG E G++ + L + + P SLN+S +++WE ++ Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172 >gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM 17241] gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM 17241] Length = 171 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++PQ+ +N G +AR +L LV P ++ + + + + + Sbjct: 6 IVLIEPQIPQNTGNIARTCAATG-ARLHLVGPMGFEITDAKLKRAGLDYWHLLDITTYPD 64 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 A F + TT R + + G I+FGRE GL Sbjct: 65 SASFFAQNRGPFYFFTTKARRTYTEP-------------QYPDGAY--IVFGREDAGLPE 109 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + + P+ SLN+S V + V+E + Sbjct: 110 ELLFQNPDCCVRLPMIAGARSLNLSNTVAVAVYEVLRQW 148 >gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756] gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756] gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium 3_1_46FAA] Length = 167 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P SEKA + + + V Sbjct: 4 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKALKRA--GMDYWNDLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ E ATT A + + I+FG+E G Sbjct: 61 IDYADFLEKNPGAKIYMATT---------------KAKKVYTEAAYEPDCYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + + P+ SLN+ +V ++++E + Sbjct: 106 IPEEILVDHEDTCVRIPMMGQIRSLNLGNSVAVVLYEALRQ 146 >gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans 2-40] gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40] Length = 177 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 64/177 (36%), Gaps = 15/177 (8%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A QN I+L +P++ N G + R N +L L+ P +K + Sbjct: 14 AAKPQQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGL 72 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 SV +N I + + + A + + G+ + Sbjct: 73 DYGEWQSVVTHANWDAFIK------------QQAPERLWALSTKGTKFHHEVSIGEGDYL 120 Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +FG E GL E + + ++ P+ P S+N+S A +MV+E + K Sbjct: 121 VFGPETRGLPMEILEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 177 >gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 158 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ + ++ +FG E GL Sbjct: 65 ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFSD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens] gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens] Length = 289 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 +P + +++A I+L +PQ+ +N G + R +L LV P S++ + Sbjct: 124 SPEKTE-KSTAAPMKIVLYNPQIPQNTGNIIRTCSVTG-AELILVKPLGFELSDRKLKRA 181 Query: 62 ANADCVIDSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 D V+ V +L+E + + +++ A + + Sbjct: 182 --GLDYWDEVKISVVDSLEEILEENDDFCFFSSK--------------ATQWHTDRTYSK 225 Query: 120 NVGIIFGRERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 N +IFG E GL E + +I P+ LN+S AV + ++E Sbjct: 226 NSILIFGSETSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIYEAWRQ 278 >gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 153 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 26/165 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 P ++LV+PQ+ +N G +AR T L LV P S++ + V + Sbjct: 2 PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRA--GLDYWPYVPLK 58 Query: 73 VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +++++ A ++ +AR + N+ V P + L +FG Sbjct: 59 YHTHIEDFRAFHQPLGGRWV-GFSARGKQNY--VSFPFQENDWL------------LFGS 103 Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E GL E +AL A + P++ P SLN+S + + ++E Sbjct: 104 ETEGLPPEVLALCQATVYIPMSQPNVRSLNLSVSAAVGLFEARRQ 148 >gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM 2912] gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM 2912] Length = 157 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G VAR T L LV P ++ + V Sbjct: 8 VVLVEPEIPPNTGNVARTCAATG-TVLHLVRPLGFEVDDRHLRRAGLDYWHWVHVEYHDR 66 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + + F Y +T R + P + ++FG+E GL Sbjct: 67 FEDLLEEHPEGRFFYFSTKGKRQYAEVRYRPGDF---------------LVFGKETRGLP 111 Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ P SLN+S +V L ++E + Sbjct: 112 DALLERFPEQTLRIPMRPDIRSLNLSNSVALALFEALRQ 150 >gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans JJ] gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans JJ] Length = 156 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L +P++ +N G VAR T L L+ P ++ + V V+ Sbjct: 4 VVLYEPEIPQNTGSVARLCAA-AKTPLHLIKPLGFSLEDRYLKRA--GLDYWPYVDLTVW 60 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A + + ATTA NR + + N +IFG E G Sbjct: 61 DRFDDYLAARPRNRLVATTAGNRGHTAVPYHT-----------LAYTPNDSLIFGTESRG 109 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + ++ + P+ SLN++ A ++++E + + Sbjct: 110 LPESLLDAASIRLRIPIWGHVRSLNLANAASIVLYEALRS 149 >gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus Puniceispirillum marinum IMCC1322] Length = 163 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 IIL PQ+ N G + R N +L LV P EK+ + + RV Sbjct: 4 IILFTPQIPPNTGNIIRLCANTG-ARLHLVKPLGFSLDEKSCRRA--GLDYHEMARVQQH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + + + N + + A + + +FG E GL Sbjct: 61 DNLDACLD----VLGMSI----NTQRLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLP- 111 Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + I + + +S P+ P SLN+S AV + ++E + + + + Sbjct: 112 DSIHAALGDHQKLSLPMLPANRSLNLSNAVSVTLYEAWRQTGFQTPEAQE 161 >gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 154 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R + N L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLVANNGCM-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + A+ TT +R + P + ++FG E G Sbjct: 61 KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPGDV---------------LLFGSETSG 105 Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI S+ I P+ SLN+S AV ++ +E Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147 >gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis JLW8] Length = 154 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +P++ N G + R N QL LV P +K + + +V Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTG-AQLHLVKPLGFSLEDKQLKRA--GLDYHEYANLKVH 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ A+A H ++A T + + +FG E G Sbjct: 61 ENWEDCKAALAG-HRLFAITTKGSTTHSHIQF--------------KAGDAFVFGPETRG 105 Query: 132 LTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ EE+ + + P+ P SLN+S + ++++E Sbjct: 106 LS-EEVRNEFTAEHRVRLPMLPNSRSLNLSNSAAILLYEAWRQ 147 >gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor owensensis OL] gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor owensensis OL] Length = 154 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 I+L +P++ N G +AR ++L L+ P +K + V Sbjct: 2 PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ +L + + Y +T + + AP E N ++FG+E Sbjct: 59 KIYRDLNDFFEKNRGANIFYYSTKGKQYYTQ---APYED------------NCYLMFGKE 103 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL I + P+ SLN+S +V ++++E + Sbjct: 104 TAGLPRWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147 >gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202] Length = 157 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-ER 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM 10507] gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM 10507] Length = 166 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 24/172 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P +EKA + + V Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRA--GMDYWKDLDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ E YATT AP+ V E ++ I+FG+E G Sbjct: 63 LDYNDFLEKNPGAKIYYATTK----------APQRYTDVRFE-----EDCYIMFGKESAG 107 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + E + + A I P+ SLN+S +V ++++E + ++ Sbjct: 108 IPEEILLENQATAIRIPMIGDIRSLNLSNSVAIVLYEALRQHQFDHMQSEGH 159 >gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50] gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50] Length = 163 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 24/172 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R +L L+ P +EK + D V ++ Sbjct: 4 IVLHEPEMPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTIY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + ATT + + ++ I+FG+E G Sbjct: 61 DDFNDFLKKNPGAKIYMATTKSKQKYT---------------DVNYEEDAYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + E + + P+ P SLN++ +V ++++E + + + Sbjct: 106 IPEEILLDYKETAVRIPMFPEIRSLNLANSVAIVLYEALRQQGFPELETKGQ 157 >gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299] gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299] Length = 369 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + +++V + NIG +ARA +F LRLV PR S + SS+ A Sbjct: 74 RDPPAALEDVCVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQ 133 Query: 66 CVIDSVRVFSNLKEAIADLHFIYA 89 V+ + ++ EAIAD A Sbjct: 134 HVVHGAGEYLSVAEAIADCDAAVA 157 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++FGRE GLT+EE+ L +A P L SL++S A ++++ + ++ ++ Sbjct: 283 GKLALVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVSHAAVIILSQYYQHRASAAGH 342 Query: 179 NVKEQNTP 186 + P Sbjct: 343 APRLSELP 350 >gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135] Length = 221 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 V++L + + NIG V R F + + L P + ++ A+ +D + Sbjct: 67 PLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDW-KY 125 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFS-GQNVGIIFGRERW 130 F + ++A+ +LH N+ +VLA ++ A +L+E + G+ I+ G E Sbjct: 126 FKHTQDAVNELH----------NDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVK 175 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + + I P SLN+S +M+WE Sbjct: 176 GVQQEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWE 212 >gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 154 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 15/164 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L L+ P +K + SV +N Sbjct: 4 IVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHAN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I + + + A + + G+ ++FG E GL E Sbjct: 63 WDAFIK------------QQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + ++ P+ P S+N+S A +MV+E + K Sbjct: 111 LEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 154 >gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t. morphotype B'] Length = 162 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L++P++ N G +AR L L+ P EK + D +++ + Sbjct: 3 IVLLEPEIPHNTGAIARTCAATGAA-LHLIEPLGFKLDEKHVRRA--GLDYWDKLNIKRY 59 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N E + D IY T + + + VL + I+FG+E G+ Sbjct: 60 CNFAEFLVQNDFPKIYMATTKAKQKYSDVLY--------------EADAWIMFGKESGGI 105 Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + I P+ SLN++ +V ++++E + Sbjct: 106 P-EEILRDHKETAIRVPMLKDIRSLNLANSVAVILYEALRQ 145 >gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 154 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N + L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +YA T + + + ++FG E GL + Sbjct: 63 FDAYLEKCQPKKVYACTTK--------------GSQFHHQAQYEAGDCLVFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + P+ S+N+S AV + V+E Sbjct: 109 DMIQALPNEQRVRIPMQADSRSMNLSNAVAVFVYESWRQ 147 >gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] Length = 181 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L PQ+ +N G +AR N L ++ P ++ + D V + Sbjct: 19 IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + +++ + +E G++ +FGRE GL Sbjct: 76 DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 EE +N + P+N SLN+S V ++V+E + Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167 >gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442] Length = 157 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V+ Sbjct: 6 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 63 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + A+A I+A T + + + VL +FG E G Sbjct: 64 ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 108 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + I P+ P S+N+S V ++++E Sbjct: 109 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 150 >gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799] gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799] Length = 154 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 33/166 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N +L L+ P EK + +D + Sbjct: 4 IALYEPEIAPNTGAIIRLCANNGC-RLHLIEPLGFDMDEKKLRRAG-----LDYAELTTV 57 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +++ EA+A ++A T + P+ A + ++FG E Sbjct: 58 TRYPDYASFLEAMAG-RRVFALTT---KGSRPHTEPQYQAGDV-----------LLFGPE 102 Query: 129 RWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I S I P+ SLN++ AV ++ +E Sbjct: 103 SRGLPEAVREAIPTSQRI-RIPMKADARSLNLANAVSIVSYEAWRQ 147 >gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 11/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N+ VI+L N+G +AR+ + L + N R + SSA A + Sbjct: 95 ENNNAALVIVLDHITDAGNLGAIARSAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHL 154 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V +NL A+ R + V E A + ++ G E Sbjct: 155 PVAQV-ANLTGALD----------RLKKAGFWVAGASEHAQHTVWEAPLYGKIALVMGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G++ + + ++ P + SLN++QA +++E + Sbjct: 204 QEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAVMYEWLRQ 246 >gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii 12D] Length = 156 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F S+ P + +FG E Sbjct: 62 DWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERREWFPATQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] Length = 159 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 25/171 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++L P++ +N+G +AR +L LV P + + VR Sbjct: 8 VRVVLYQPEIPQNVGNIARTCAAVG-AELHLVRPFGFRWGDPRMKRA--GLDYWPHVRYV 64 Query: 75 --SN---LKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 E + ++A TT R + P + ++FG E Sbjct: 65 LHDTWAAFLETLGPQDRLFAFTTKGERRYTEVAYRPGDY---------------LLFGPE 109 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 GL E + + ++ P+ SLN+S AV + V+E + + ++ Sbjct: 110 TRGLPPEILEVWPRLV-IPMPGPVRSLNLSVAVGVAVYEALRQAGFAAPGE 159 >gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205] gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205] Length = 157 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 28/166 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L +P++ N G + R N QL LV P +K + + R ++ Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRA--GLDYHEWARMLIW 60 Query: 75 SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N++ +AD + ++ T + +V + V ++ G E Sbjct: 61 DNIELCLADLKSKGVEHVFPLTTKGSATPHTVDLNR--------------PVALLMGPET 106 Query: 130 WGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + I P+ SLN+S A ++V+E Sbjct: 107 RGLP-EHVRMMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale ATCC 33656] gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale ATCC 33656] gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM 17629] gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1] Length = 167 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 37/189 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P SEKA + + V Sbjct: 6 IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E YATT + P I+FG+E G Sbjct: 63 VDWEDFLERNPGAKIYYATTKGRHVYSDAHFEPDCY---------------IMFGKESAG 107 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 + E + + I P+ SLN+S +V ++++E + + Sbjct: 108 IPEEILKEHPDECIRIPMIGETRSLNLSNSVAIVLYEALRQNNF-------------DHM 154 Query: 191 ELLSFLDYL 199 L L +L Sbjct: 155 RLEGELHHL 163 >gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057] Length = 184 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + R K + E + + +FGRE GL Sbjct: 79 DSLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAESSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7] Length = 169 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 24/167 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L++P++ N G + R T+L L+ P ++K + D + V+ Sbjct: 5 IVLLEPEMPANTGNIGRTCVATG-TKLHLIKPLGFEITDKMVKRA-GLDYWPHLNYEVYE 62 Query: 76 NLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N ++ + D ATT A + + + ++FG+E Sbjct: 63 NFEDFLEKNPDCIGKLYMATT---------------KARHIYTEVAYEPDSYLMFGKESA 107 Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ E + + + P+ SLN+S +V ++++E + + Sbjct: 108 GIPEEILVKYEDYCMRIPMEYNIRSLNLSNSVAIVLYEALRQHQFAQ 154 >gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18] gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491] gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18] gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491] gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013] gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE 2594] gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M6190] gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis ES14902] gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis 961-5945] gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis G2136] gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240355] Length = 154 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V+ Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + A+A I+A T + + + VL +FG E G Sbjct: 61 ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + I P+ P S+N+S V ++++E Sbjct: 106 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147 >gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396] gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396] Length = 154 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G + R N T L L+ P +K + + + Sbjct: 4 IVLFQPEIPPNTGNIIRLCANCGFT-LHLIEPLGFTWDDKRLQRA--GLDYHEYAPVKRH 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ + ++ + +YA + R ++ + V +G ++FG E GL Sbjct: 61 GDFQQFLDEVRPNKVYALSTRGKSYYHEV------------SFAAGD--ALVFGPETRGL 106 Query: 133 TN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E+ S + + P+ SLN+S V L+ +E Sbjct: 107 PQQMLDELG-SESCLRVPMRQDSRSLNLSNTVALVSYEAWRQ 147 >gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 181 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L PQ+ +N G +AR N L ++ P ++ + D V + Sbjct: 19 IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + +++ + +E G++ +FGRE GL Sbjct: 76 DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 EE +N + P+N SLN+S V ++V+E + Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167 >gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. G11MC16] gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. G11MC16] Length = 157 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ E A F + + + +++ +FGRE GL Sbjct: 62 DSIDELFARF---------PGGEFYFITKFGQQYYDSFDFSDQKKDIFFVFGRETTGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + + P+N SLN+S ++V+E + Sbjct: 113 ELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151 >gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 266 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P + L N+G + R L L+ A +S + + VR Sbjct: 118 PWVALNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLFALRMVR-- 175 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + E A + + + TT ++++ P ++ G ER Sbjct: 176 TTFDEFAAWKQTNGYHVIGTTPDVEQEYQTISYP--------------SPAILLMGSERL 221 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ E ++ + ++ P+ SLN+ A ++++E Sbjct: 222 GLSVGEQSVCDTLVRIPMAGTCDSLNLGVATSIVLYEMFRQQ 263 >gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150] Length = 167 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + R K + E + + +FGRE GL Sbjct: 62 DSLEDFMEQMD------GRLYLISK-----FAEKVYSEEYFAAEGSHYFMFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 110 EEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163 >gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii SL3/3] Length = 168 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G VAR +L LV P +K + + + Sbjct: 9 IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPMGFAIDDKKLKHA--GLDYWHYLDI--T 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +AD ARN A + ++FGRE GL Sbjct: 64 YYDGLADFF------ARNNG---PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114 Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172 +A + P+ SLN+S +V + V+E + Sbjct: 115 LAENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151 >gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella capsiferriformans ES-2] gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella capsiferriformans ES-2] Length = 158 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N QL L+ P +K + ++RV+ + Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTLEDKQLIRAGLDYHEFANLRVYDH 62 Query: 77 LKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ ++ D I+A T + F + +FG E GL Sbjct: 63 LEACLSAFDAGRIFALTTKGSQPFHEIRY--------------QPGDAFLFGPESRGLPA 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P SLN+S V + V+E Sbjct: 109 EVLNQLTTTQRVRLPMLPDNRSLNLSNTVAVAVFEAWRQ 147 >gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2] gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2] Length = 157 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ E A F + + + +++ +FGRE GL Sbjct: 62 DSIDELFARF---------PGGEFYFITKFGQQYYDSFDFSDQEKDIFFVFGRETTGLPK 112 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + + P+N SLN+S ++V+E + Sbjct: 113 ELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151 >gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 158 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ N G + R N L ++ P +K + + V + Sbjct: 8 IVLYEPEIPGNTGSIIRLCANTGAA-LHVIKPLGFEMDDKRLRRA--GLDYHEFASVMQW 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L H+ R +N+ + ++A + + + + ++FG E GL Sbjct: 65 ESLA------HY------REQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETKGLPE 112 Query: 135 E---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ + I+ P+ P SLN++ AV ++V+E Sbjct: 113 AILVTLSR-DHIVKLPMLPNSRSLNLANAVSVVVYEAWRQGDYPGA 157 >gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1] gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1] Length = 158 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKD 62 Query: 77 LKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 IA + TT ++ Q ++FG E Sbjct: 63 YAAFIAYLEENNPNYRLFACTTKTTGHHT---------------DAKYQQGDVLLFGPET 107 Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I I P+ P SLN+S AV ++ +E Sbjct: 108 RGLPAEVIESLPMEQRIRIPMMPDARSLNLSNAVAIIAYEAWRQ 151 >gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus DSM 2876] gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus DSM 2876] Length = 164 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R + T L L+ P ++K + D VR++ Sbjct: 4 IVLHEPEMPANTGNIGRTCVATD-TVLHLIEPLGFKINDKMLKRA--GLDYWDKLDVRIY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A ATT R+ + + I+FG+E G Sbjct: 61 DDFDDFLAKNPGAKIYMATTKAARSYT---------------DVQYEDDCYIMFGKESAG 105 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ SLN+S +V ++++E + Sbjct: 106 IPESILQKYQDTAVRIPMWGDIRSLNLSNSVAIVLYEALRQ 146 >gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp. AL212] gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp. AL212] Length = 154 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 IIL P++ N G + R N + QL LV P +K + + + V Sbjct: 4 IILYQPEIPPNTGNIIRLCANTGM-QLHLVKPLGFPLQDKQLLRA--GLDYHEFAQIIVH 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + +L H ++A T R + + +++ +FG E GL Sbjct: 61 DSWADCCHNLRDHRMFAITTRGKQGY--------------DKVSYAAGDAFLFGAESRGL 106 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + I P+ SLN+S V ++ +E S Sbjct: 107 PSHIMDTFPEQRRIRVPMVANSRSLNLSNTVAIIAYEAWRQS 148 >gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 158 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 +IL P++ N G V R N +L L+ P S+K + + R V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYARLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A+A L ++A + R+ + + +FG E GL Sbjct: 65 PDLPTALATLAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFTGGQ 158 >gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21] gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21] Length = 158 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 24/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ N G +AR T L LV + G+ ++ A V + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAG-LDYWSEVEIHYW 65 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK+A F+Y + +++ P + I+FG+E G Sbjct: 66 PDLPALKQAYPGGRFVYTSKKADKSYLAFTFLPGDF---------------IVFGKETKG 110 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 L E I + + P+ SLN+S + ++++E + S Sbjct: 111 LPEELIEANAQTAVRIPIPGKVRSLNLSTSAGIVLYEALRQSGA 154 >gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 181 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L PQ+ +N G +AR N L ++ P ++ + + V + Sbjct: 19 IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWEKLDVTFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + +++ + +E G++ +FGRE GL Sbjct: 76 DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 EE +N + P+N SLN+S V ++V+E + Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167 >gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] Length = 160 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L P++ N G +AR + T L L+ P +K + V + Sbjct: 2 GIHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLRRA--GLDYWQFVEI 58 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++E +N L E + ++ IFGRE Sbjct: 59 NYYDSIEEFFE----------KNEGGEFYYLTKYGENVHSGYDYSNKEKDYYFIFGRETT 108 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL +E I + + P+N SLN+S ++V+E + Sbjct: 109 GLPDEVIENNKDRCLRIPMNNNARSLNLSNTAAILVYEALRQQ 151 >gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 174 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+LV+P++ +N G VAR +L LV P G+ + + A D +D + + Sbjct: 15 IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHYLD-INYY 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L++ ARN+ F A I ++FGRE GL Sbjct: 72 DGLEDFF----------ARNKGPFYYFTT---KAPQRYTDIQYPDGAYLVFGREDAGLPE 118 Query: 135 EEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172 +A + P+ SLN+S +V + V+E + Sbjct: 119 ALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 157 >gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 155 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+P++ N G VAR L LV P S+K + D + ++ Sbjct: 6 IVLVEPEIPPNTGNVARLCAATGAA-LHLVKPLGFEISDKHLKRA--GLDYWDMLDIHIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N E A+N + + K A L+ I Q I+FG+E GL+ Sbjct: 63 ENYAE----------FEAKNPQGPRYLATTK--AQRLHTDIHYQQGGYILFGKETKGLSP 110 Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E +A + P+ SLN+S +V ++V+E + Sbjct: 111 EILARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQWGNPG 153 >gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3] gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3] Length = 169 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D ++V Sbjct: 17 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAGLDYHEYAQMQVHR 74 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + IA D ++A T R F P + +FG E Sbjct: 75 DWDAFIAREQPDPARLFAFTTRGSGRFHDHAFTPGDW---------------FVFGAETR 119 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + P+ P SLN+S V ++V+E + Sbjct: 120 GLSESMLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 163 >gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 156 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 22/165 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L +P + +N G + R +L LV P +K + D V V Sbjct: 3 VVLYNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNPSVV 59 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L EA++ + ++ + + + V P + +FG E GL Sbjct: 60 DSLDEALSGIDENKVFCLSTKGSQCYGDVSLPMDG--------------VYVFGSESKGL 105 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + N P+ P SLN++ V ++++E + + S+ Sbjct: 106 PEEVLKKYYNHCYYLPMKPGVRSLNLATTVGVVLFEAVRQNNQSA 150 >gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51] gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 155 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+P++ N G VAR L LV P S+K + D + ++ Sbjct: 6 IVLVEPEIPPNTGNVARLCAATGAA-LHLVKPLGFEISDKHLKRA--GLDYWDMLDIHIY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N E A+N + + K A L+ I Q I+FG+E GL+ Sbjct: 63 ENYAE----------FEAKNPQGPRYLATTK--AQRLHTDIHYQQGGYILFGKETKGLSP 110 Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E +A + P+ SLN+S +V ++V+E + Sbjct: 111 EILARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQWGNPG 153 >gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 152 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++LV+P++ N G ++R N T L LV P S++ + D + Sbjct: 3 VVLVEPEIPPNTGNISRTCAVSN---TTLHLVEPLGFSISDRELKRA--GLDYWDKLSYQ 57 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F++++ + ATT R +N + + P++ ++FG+E Sbjct: 58 VHENFTSVENLLQTHPIYIATT-RGKNYYYDIEYPRD--------------SVLVFGKET 102 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + I I P+ P F SLN+S +V ++++E + Sbjct: 103 EGLPDWIINKYYENSIRIPMAPDFRSLNLSNSVAVVLFEALRQQ 146 >gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 172 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 10/151 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L L K ++ + + + EAI Sbjct: 32 QTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTW-TICEEVSEAIE 90 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + R + + A+ +NE + + FG E GL+ +A + Sbjct: 91 GI--------RAAGYGLVGVELADQAVPINEAALP-EKACLAFGHEDRGLSATTLAACDV 141 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P SLN+S A + ++E Sbjct: 142 VAFIPQLGKVGSLNVSTAAGIALYELNRRGW 172 >gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 16/169 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L++P++ N G + R T+L L+ P +EKA + D V V+ Sbjct: 3 VVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRA--GLDYWDKLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ ++ + RN + + A + + + ++FG+E G+ Sbjct: 60 SDYQDFLE----------RNPDALGRMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPE 109 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + + + P+ SLN+S +V ++++E + + + + Sbjct: 110 EILVENEDHCVRIPMWGDIRSLNLSNSVSIVLYEALRQHGFEEMELMGQ 158 >gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter turnerae T7901] gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter turnerae T7901] Length = 155 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 ++L P++ N G + R N QL LV P +K + ++++ Sbjct: 4 VVLYQPEIPPNTGNIIRLCANTGC-QLHLVKPLGFVLDDKRLRRAGLDYSEWQNLKIHEN 62 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L++A A I+A + + A R +G ++FG E GL Sbjct: 63 WQSLRDA-AGTATIWALSTKG------------TATHSEARFSAGDY--LVFGPETRGLP 107 Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + E ++ P+ S+N+S A +MV+E S K Sbjct: 108 ADIRESLPPEQVLRIPMQAQSRSMNLSNAAAVMVYEAWRQLGYPSAK 154 >gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506] gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506] Length = 152 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 17/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 P ++L+ PQ+ N G +AR T+L LV P S++ + ++ Sbjct: 2 PSVVLISPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPYVNLH 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL EA H R + K R N ++FG E GL Sbjct: 59 SHDNL-EAFKACHQ-------QRGGRWIGFSTK--GQCSYTRFEFQNNDWLLFGAETTGL 108 Query: 133 TNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E + + P++ P SLN+S +V + ++E Sbjct: 109 PPEILEACTN-VRIPMSEPGVRSLNLSVSVAVGLFEAQRQ 147 >gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1] gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1] gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium SSC/2] gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 165 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 22/172 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R L L+ P +EK + D + V Sbjct: 4 IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFRLNEKMIKRA--GLDYWDKLDVRTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + E D ATT K V + ++V I+FG+E G Sbjct: 61 INFEDFLEKNNDPKIYMATT-----KAKHVYSAPAY--------EDDEDVYIMFGKESAG 107 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + E + I P+ P SLN+S +V ++ +E + + + + + Sbjct: 108 IPEEILLNYEETSIRIPMLPHIRSLNLSNSVAIVAYEVLRHQGFKAFQMEGQ 159 >gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp. CNPT3] gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp. CNPT3] Length = 154 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 I L +P++ +N G + R N L L+ P +EK + + I + Sbjct: 4 IALFEPEIPQNTGAIIRVCANTGCI-LHLIEPLGFDFNEKRVRRAGLDYHEIANIKHHKN 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + E++ + TT K SG ++FG E GL Sbjct: 63 YQDFLESVKGKRILACTT-------------KTTTYHSQANFQSGD--VLLFGPETRGLP 107 Query: 134 NEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E + +A+ + P+ P S+N++ AV + V+E Sbjct: 108 SELL---DALPLEQKLRIPMQPNSRSMNLANAVSVFVYEAWRQ 147 >gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus str. Jelinkova 176] Length = 181 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 18/164 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +PQ+ +N G +AR N L ++ P ++ + + VR + Sbjct: 19 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWEKLDVRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL++ + +++ + + +E GQ +FGRE GL Sbjct: 76 DNLEDFLDKCD-----------GQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPE 124 Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176 + + P+N SLN+S V ++V+E + Sbjct: 125 AFMRKYPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFEG 168 >gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81116] gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni M1] gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 155 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L ++ P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase lin0934 gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL J1-023] Length = 169 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E A F Y T + V + + +N +FG+E Sbjct: 61 YDSLDEFFEKNAGGEFYYIT-----KFGRHVYSDVDY-------SDPNKNYFFVFGKETT 108 Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL +E+ +N + P+ SLN+S ++ +E + Sbjct: 109 GLP-DELLQANEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151 >gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 186 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 27/176 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + RV+ Sbjct: 4 VILYQPEIPPNTGNVIRLCANTG-AHLHLIRPLGFDLDDKNLRRA--GLDYHEYASVRVY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKS-----VLAPKEAAIVLNERIFSGQNV-------- 121 L E + L TA N ++ +E A F+ + Sbjct: 61 DTLVECLDTLPLA---TALPHPNPPPGGEGTSVSLRELADTRRAFAFTTKGSHPFNEVRY 117 Query: 122 ----GIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL E +A + P+ P SLN+S V + V+E Sbjct: 118 QPGDAFLFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYEAWRQ 173 >gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057] gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB056] gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB058] gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AB059] gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013150] gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013113] gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057] gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013150] gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter baumannii 6013113] Length = 157 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N QL LV P +K + ++++ N Sbjct: 4 VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ ADL A+ + + + + V ++ G E GL E Sbjct: 63 IELCRADLK------AKGVEHIFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112 Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L I P+ SLN+S A ++V+E Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151 >gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 1_1_41FAA] gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 1_1_41FAA] Length = 150 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ N + L L+ P EK + + ++++ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---STLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLEANKGIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC 27126] Length = 154 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + V+ +N Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAN 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + D ++A T + + V + +IFG E GL + Sbjct: 63 LDAYLNDAKPKRVFACTTKGKAFHSDV--------------SYEKGDALIFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + P+ P S+N+S AV + V+E Sbjct: 109 DYIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147 >gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 178 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L D + NIG V R F + + L P + ++ A Sbjct: 18 EEFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGA 77 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERI--FSGQNV 121 + +D + F + ++A+ +L R ++ A ++ +L +++ + Sbjct: 78 EYTVDW-KYFQHTEDAVNEL----------RTMGYTLFAIEQCEGSILLDKLVLEPDKKY 126 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ G E G+ E + L + I P SLN+S +++WE Sbjct: 127 AVVLGNEVKGVKQEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWE 172 >gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70] gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70] Length = 157 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E F + T K + + + + +FGRE G Sbjct: 62 DSLEELFERYPNGEFYFIT-----KFGKKYYDSFDFSDMEKDH-------FFVFGRETTG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + + + P+N SLN+S ++V+E + Sbjct: 110 LPKDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151 >gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 1336] gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 1336] Length = 155 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L+ P++ +N G + R +N +L +V P S+KA + D + ++ Sbjct: 4 IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENIIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708] Length = 153 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 14/159 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P I+LV+PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 2 PQIVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + EA +H R + + +N + + +++G E GL Sbjct: 59 YHESMEAFQTIHQ-------QRGGRLLGFTVRGSFNYINYQFQADDW--LLYGSETTGLP 109 Query: 134 NEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 ++ ++ + P++ P SLN+S +V + ++E Sbjct: 110 ATVLSTCDSTLYIPIDEPGVRSLNLSISVAIGLFESRRQ 148 >gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC] gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae] gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC] Length = 156 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 22/165 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L +P + +N G + R +L LV P +K + D V V Sbjct: 3 VVLYNPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59 Query: 75 SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L EA++ + ++ + + + V P + +FG E GL Sbjct: 60 DSLDEALSGVDQNKVFCLSTKGSQYYGDVSLPMDG--------------VYVFGSESKGL 105 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + N P+ P SLN++ V ++++E + + S+ Sbjct: 106 PEDVLKKYYNHCYYLPMRPGIRSLNLATTVGVVLFEAVRQNNQSA 150 >gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1003] gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1003] Length = 156 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P E A+ A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLEDAKLRRAG-LDYHEYAQMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +N IA D ++A T R F P + +FG E Sbjct: 61 ANWAAFIAKESPDASRMFAFTTRGSGRFHEHAFKPGDW---------------FVFGAET 105 Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 106 RGLPDAVLDQFTGEQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150 >gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 262 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 27/181 (14%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A +L G ++L Q NIG + R+ + + L S K ++ Sbjct: 103 PSAEKLPED--GDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLRAAM 160 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118 A ++ ++ + A+ R ++ L A L+ER Sbjct: 161 GAHFLL---TLYPDTDLAV------------WRQGYRPPLL----ATALDERACGLYGLD 201 Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G +FG E G++ E +++ + P+ SLN++ A + ++E M + ++ Sbjct: 202 LRDPCGWLFGNEGAGISAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQRLPAA 261 Query: 177 E 177 E Sbjct: 262 E 262 >gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 155 Score = 79.3 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ +N G + R +N +L ++ P S+KA + D + ++ Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL+E + + F +ATT + F +N + FG E Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E+ N I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148 >gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter tundripaludum SV96] gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter tundripaludum SV96] Length = 158 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N + QL L+ P +K + +V+ + Sbjct: 4 IVLYEPEIPANTGNIIRLCANTGM-QLHLIKPLGFELDDKKLRRAGLDYHEWVAVKEHDS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + + + I+A T + + V E A +FG E GL Sbjct: 63 LADFVDSIKPGRIFALTTKGTQIYSEVSFQPEDA--------------FLFGPETRGLPA 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +A S + P+ SLN+S V ++++E Sbjct: 109 TVLADLGSERCLYLPMQAESRSLNLSNTVSIVLYEAWRQ 147 >gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae pv. oryzae PXO99A] Length = 158 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A+A + ++A + R+ + + +FG E GL Sbjct: 65 VDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica ATCC 23970] gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria polysaccharea ATCC 43768] gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640] gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica ATCC 23970] gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria polysaccharea ATCC 43768] gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha710] gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06] gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76] gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis N1568] gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis OX99.30304] gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M13399] gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M0579] gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis CU385] gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240013] gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis H44/76] gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M01-240149] gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis M04-240196] gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis NZ-05/33] Length = 154 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + A+A I+A T + + + VL +FG E G Sbjct: 61 ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + I P+ P S+N+S V ++++E Sbjct: 106 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147 >gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B] gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B] Length = 158 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 25/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N +L L+ P EK + D RV Sbjct: 8 IALYEPEIAPNTGNIIRLCANNGC-ELHLIEPLGFDLEEKKLRRA--GLDYSDMTRVTRH 64 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + EA+A + TT +R + E + +V ++FG E G Sbjct: 65 KDFPSFLEAMAGRRILACTTKGSRPHT--------------ELEYQAGDV-LLFGPESRG 109 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L + I + P+ SLN+S AV ++ +E + Sbjct: 110 LPMDIINSVPTEQRLRIPMVESSRSLNLSNAVAIISYEAWRQQGFGGAR 158 >gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ] Length = 154 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L++P++ N G +AR T L LV ++ + D V + + Sbjct: 6 IVLIEPEIPPNTGNIARLCAATAAT-LHLVGKLGFSIDDRYLKRA--GLDYWDKVDLKRW 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL++ + H F + + A E+ ++FG+E GL Sbjct: 63 ENLEQ-LQQQH--------PEGRFWYLST--KVARNCYEQGIYQPGDFLVFGKETAGLP- 110 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E+ L+N ++ P+ SLN+S A ++++E + + Sbjct: 111 AELLLANQERCLTIPMPGQVRSLNLSNAAAVVLYEALRQT 150 >gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/9768] gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/11222] gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/11074] gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis G/9301] Length = 151 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 I+L +P + +N G + R +L LV P ++K + + S+ V Sbjct: 2 RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EA+ + I+ T + + + P + IFG E G Sbjct: 59 VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + A ++ + P+ SLN++ +V ++++E Sbjct: 105 LPQTVLDAYASQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu] gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1] gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu] gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 151 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 22/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 I+L +P + +N G + R +L LV P ++K + + S+ V Sbjct: 2 RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EA+ + I+ T + + + P + IFG E G Sbjct: 59 VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ + A S+ + P+ SLN++ +V ++++E Sbjct: 105 LSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] Length = 149 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ +N G + R ++ L +V P ++K + + + Sbjct: 3 VVLVEPEIPQNTGNIGRLCVATGVS-LIIVGPTGFILNDKKLKRA--GMDYWKHLDFTFY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +EA A N + +P + + + + +IFG+E GL Sbjct: 60 PTFEEARAVFD----------QNDIFLFSP--SGKNIYTKGRYSKESILIFGKESMGLDK 107 Query: 135 EEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ SLN++ +V ++++E + Sbjct: 108 NILQEFEEKTYFIPMKKEARSLNLANSVAIVLYEALRQ 145 >gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 154 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N +L LV P +++ + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVKPLGFDLADRNLRRA--GLDYHEYAEVRVH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+ A+ TT R + +R F+ +V +FG E G Sbjct: 61 DDWPALRVALVGRRLFACTTRAART--------------IADRRFAAGDV-FVFGSETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L +A + + P+ P SLN+S AV + V+E + Sbjct: 106 LPAAVLAEFADDWRLRLPMLPGQRSLNLSNAVAVTVFEAWRQQAYAGG 153 >gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 156 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G + R N QL L+ P G+P + A+ A D +++V+ Sbjct: 4 VVLVEPEIPPNTGNIIRLCANSG-AQLHLIEPL-GFPLDDAKMRRAGLDYHEFATMKVYK 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N L++ D ++A T R + F ++ IFG E G Sbjct: 62 NWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDM--------------FIFGSETKG 107 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E A + P+ P SLN+S +V + V+E Sbjct: 108 LSPEIHAFFQDGHRVRLPMRPDNRSLNLSNSVAIAVYEAWRQ 149 >gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus oremlandii OhILAs] Length = 156 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++P++ +N G +AR + L L+ P EK + + +R + + Sbjct: 4 VVLLEPEIPQNTGNIARTCAATG-SVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYYDS 62 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +E ++ + YATT + ++ P+E N I+FG+E G+ Sbjct: 63 YEEFLSKNPEATIYYATT-KAEKAHSEMVYPEE-------------NCYIMFGKETAGIP 108 Query: 134 ----NEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 NE I P+ SLN+S +V ++V+E + Sbjct: 109 KNILNENKETC---IRIPMVDLEKARSLNLSNSVAIVVYEVLRQ 149 >gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10] gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC] gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1] gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC] gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10] gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC] Length = 156 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 22/165 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P + +N G + R +L LV P +K + D V V Sbjct: 3 VVLYQPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L E ++ + ++ + + + V P + +FG E GL Sbjct: 60 DSLDEVLSGVDEDKVFCLSTKGTQYYGDVFLPMDG--------------VYVFGSESKGL 105 Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + + P+ P SLN++ V ++++E + + S+ Sbjct: 106 PEEVLKKYHNHTYYLPMKPGIRSLNLATTVGVVLFEAVRQNNQSA 150 >gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9] gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9] Length = 159 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 I L +P++ N G + R N L L+ P EK + + + + Sbjct: 9 IALYEPEIAPNTGNIIRLCANCG-ADLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 67 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ KEA+A TT + N + G +IFG E GL Sbjct: 68 FAAFKEAMAGRRLFACTTKTTNYHT-------------NAQFAEGD--VLIFGPETRGLP 112 Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + L + P++P SLN+S A ++ +E Sbjct: 113 ADFIESLPLEQRL-RIPMHPDSRSLNLSNAAAIIGYEAWRQ 152 >gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga thiooxidans DMS010] gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga thiooxydans DMS010] Length = 157 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N QL L+ P +K + ++++ S+ Sbjct: 4 IALFEPEIPPNTGNIIRLCANTG-AQLHLIEPLGFALDDKRLRRAGLDYHEFANLKIHSD 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++A T + R + V E ++FG E GL Sbjct: 63 FAQFQQWQQQRRVFACTTKARQHHHDVQYQDED--------------ILLFGPESRGLPA 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I P+ P SLN+S A +++++ + Sbjct: 109 EVLDSLTAEFKIRIPMLPDSRSLNLSNATGIILYQAWQQ 147 >gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 188 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I L +PQ+ N G + R N +L L+ P EK + + ++ + Sbjct: 38 IALHEPQIAPNTGNIIRLAANTGC-KLHLIEPLGFNFEEKKLRRAGLDYHDLTNITRYPD 96 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ D TT +R A + +FG E GL Sbjct: 97 YATFLDAMGDRRIFACTTKGSR----PHSDINYQAGDV-----------FLFGSETSGLP 141 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++I + + I P+ P SLN++ +V ++ +E Sbjct: 142 -DDIRNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQ 181 >gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB] gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB] Length = 157 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAG-----LDYHEFT-- 55 Query: 77 LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI AD AT + + + A + + ++FG E GL Sbjct: 56 ---AIKFHADYQAFIAT-----ESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + I P+ S+N+S AV ++V+E Sbjct: 108 AEILAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147 >gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM 16841] gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM 16841] Length = 167 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P EKA + + V Sbjct: 6 IVLYEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKALKRA--GMDYWKDLDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E + ATT + V + + I+FG+E G Sbjct: 63 VNWDDFCEKNPNEKIYMATT-----KGRHVYSDVSYEP----------DCFIMFGKESAG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + EEI + + + P+ SLN+S +V ++++E + Sbjct: 108 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148 >gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 171 str. F0337] Length = 152 Score = 78.9 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I P++ N G R N L LV+P + + A+ A D + S RV + Sbjct: 4 VIFFSPRIPGNTGAAIRLSANTG-AMLHLVDP--LFDMDDAKLRRAGLDYHDLASTRVHA 60 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + + I+A T+ L ++ + ++FG E GL Sbjct: 61 TWQKCLEQIPGRIFAFTS--------------HTERLYTQVDWHGDDALLFGPEPTGLPQ 106 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + +A + P+ SLN++ + + ++E + Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145 >gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus thermoglucosidasius C56-YS93] gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y4.1MC1] gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus thermoglucosidasius C56-YS93] gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y4.1MC1] Length = 157 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E F + T K + + +++ +FGRE G Sbjct: 62 DSLDELFGRYPHGEFYFIT-----KFGKKYYDSFDF-------SDTEKDLFFVFGRETTG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + + + P+N SLN+S ++V+E + Sbjct: 110 LPKDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151 >gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii B565] Length = 154 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G + R N +L L+ P +K + + V Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+A ++A T + R + G ++FG E G Sbjct: 61 PSYEAFLAAVAP-KRVFACTTKGRT------------AHSAAQYALGD--ALLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + P+ P S+N+S AV + V+E Sbjct: 106 LPIEIIESLPFEQRLRIPMVPQSRSMNLSNAVSVFVYESWRQ 147 >gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 261 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 34/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 + LVD N+G + R + + L+ A +S A D Sbjct: 118 VALVDVADPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALFSQQIARAGWD 177 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ R +L + ++ R ++++ P+ + ++ Sbjct: 178 ELLAW-RQARSLP--------VIGSSDRGTVDYRTATYPR--------------PLILVL 214 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G ER GL++E++A + ++ P+ SLN++ A ++++E ++ Sbjct: 215 GSERQGLSDEQLAACDTVVRIPMRGRSDSLNLAVAAGILMYEITRDT 261 >gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100] gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100] Length = 155 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+P++ +N G + R +N T L ++NP EKA + + ++ Sbjct: 4 IVLVEPRIPQNTGSIGRMCFNAGFT-LHIINPLFSI-DEKAVKRA--GLDYWKKLNPMLW 59 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL++ + F +ATT + F + G + FG E Sbjct: 60 NNLEDFLKKYEKFQDRFFFATTKTTQAYFDV-------------KFQEGD--FLFFGSES 104 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 +GL E++ N I+ P+ SLN++ +V ++ +E + + S +K+ Sbjct: 105 FGLP-EQLMQKNWKNAITIPMKDCGRSLNLATSVGIVSYEALRQNFASFKKS 155 >gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 31/186 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +PQ+ +N G +AR N L ++ P ++ + + VR + Sbjct: 20 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWEKLDVRFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL++ + + +++ + + +E GQ +FGRE GL Sbjct: 77 DNLEDFLDKCN-----------GQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPE 125 Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + + P+N SLN+S V ++V+E + EL Sbjct: 126 AFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEALRQQAFEGL-------------EL 172 Query: 193 LSFLDY 198 ++ Sbjct: 173 DHIYEH 178 >gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3] gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3] Length = 159 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I L R + K ++ + G ++FG E GL E Sbjct: 63 LEAFIEYLE-----NEREGDYRIFACTTKTTGHHVDAKFQQGD--VLMFGPETRGLPAEF 115 Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens DSM 3043] gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens DSM 3043] Length = 164 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 21/177 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L L+ P +K + V+V ++ Sbjct: 4 IVLFEPEIPPNTGNLIRLCANTGF-RLHLIEPLGFALDDKRLRRAGLDYHEWARVKVHAD 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + A + R R + V + ++FG E GL Sbjct: 63 WRAFLESVQPARVLAVSTRGRTGYHEV--------------AYREGDALVFGPETRGLPQ 108 Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 + + + + P+ P SLN+S A ++V+E + + P + Sbjct: 109 AMLDALPPAQRL-RIPMLPDSRSLNLSNACAILVFEAWRQLEFAGAGIADAEAVPTS 164 >gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 170 str. F0386] gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral taxon 170 str. F0386] Length = 152 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I P++ N G R N + L LV+P + + A+ A D + + V + Sbjct: 4 VIFFSPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTLVHA 60 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E + + I+A T+ L ++ + ++FG E GL Sbjct: 61 TWQECLEHVPGRIFAFTS--------------HTERLYTQVDWRDDDTLLFGPEPTGLPQ 106 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + +A + P+ SLN++ + + ++E + Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145 >gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33] gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33] Length = 150 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ N T+L L+ P EK + + +++V+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYKKNDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera genomosp. type_1 str. 28L] gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera genomosp. type_1 str. 28L] Length = 161 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I++V+P++ N G VAR L LV P +K + + V+V Sbjct: 3 IVMVEPEIPGNTGNVARLCAANHM---TLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVH 59 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N+ + +A H +Y T ++R + + ++ + FG+E GL Sbjct: 60 ENVADVMAKYAGHAMYYLTTKSRQCYADISFTEDDL--------------LFFGKETKGL 105 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ SLN+S +V ++ +E + Sbjct: 106 PESMLKEHPERCFRIPMIEAARSLNLSNSVAIVAYEALRQ 145 >gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 153 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 12/158 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++LV+PQ+ N G +AR N T+L LV P S++ + V++ Sbjct: 2 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLQ 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + A ++ +L ++ ++FG E GL Sbjct: 59 YHLD--LEQFQ------AYHQQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPP 110 Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 + ++ P+ +P SLN+S +V + ++E + Sbjct: 111 TFQDQCDQMLYIPMPHPEVRSLNLSVSVAIGLFEALRQ 148 >gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss] gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14] gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 151 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 I+L +P + +N G + R +L LV P ++K + D S+ V Sbjct: 2 RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWDRLSLSV 58 Query: 74 FSNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EA+ + I+ T + + + P + IFG E G Sbjct: 59 VDSLEEALRGIPREKIFCLTTKGSSYYGERELPLDG--------------TYIFGAESRG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + A S+ + P+ SLN++ +V ++++E Sbjct: 105 LPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] Length = 150 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 30/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N G + R+ N T L L+ P EK + +SV + Sbjct: 3 IVLLNPEIPYNTGNIGRSCVLTN---TSLHLIKPMGFSLDEKQVKRA--GLDYWNSVDLH 57 Query: 75 --SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L+E I D +F +ATT + + +N I+FG E Sbjct: 58 TWDSLEELIKANPDSNFYFATTKTKKKYS---------------DVKYEKNDFIVFGPES 102 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ EEI +N I+ P+ + SLN+S + ++++E + + Sbjct: 103 RGVP-EEILEANKENCITIPMIKMGRSLNLSNSAAIILYEALRQT 146 >gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 190 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R+ L + LV + WP E +R SSA+A +D VR +++ L Sbjct: 22 PHNISAVLRSCDAVGLLTVHLVYTIEEWP-ELSRVSSASAVKWLDIVR-HESIEACYQAL 79 Query: 85 H----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 IYAT +A +R+ + L V ++FG E G+++E +A Sbjct: 80 RAQGFTIYATHLSAASRDLYDLDLT---------------GPVALVFGNEHRGVSDEAVA 124 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 ++ + P+ + SLNIS A + ++E + + + + + L+ +L Sbjct: 125 NADGSVVIPMMGMVQSLNISVACAVSLYEALRQRRAVGAYDRPKLSAEERQARLVRWLQR 184 Query: 199 LEISLE 204 LE Sbjct: 185 ERRVLE 190 >gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter sulfurreducens KN400] Length = 164 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV+P++ N G +AR T L LV + G+ ++ A D + +R + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + A D F Y T+ + A + I+FG+E GL Sbjct: 67 SLDQLRQAWPDARFFY-TSKK--------------AARCYVDAGFHEGDFIVFGKETVGL 111 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E++ +N + P+ SLN+S A ++++E + + +++ + Sbjct: 112 P-EDLLQANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQTGRLADRASE 161 >gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum sp. MED92] gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum sp. MED92] Length = 156 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N L LV P +K + +V++ + Sbjct: 4 VVLFEPEIPPNTGNIIRLCANTGFH-LHLVEPLGFELDDKRLRRAGLDYHEFAAVKIHPD 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ ++ + ++A T + R + E F +V ++ G E GL Sbjct: 63 LETCLSQIEPRKVWALTTKGRTSH-------------VEADFQAGDV-LLLGPETRGLP- 107 Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 EE+ ++ + P+ SLN+S A ++V+E + V Sbjct: 108 EEVRMTIPQGEWLRMPMKADSRSLNLSNACAIVVYEAWRQLDFAGAAEV 156 >gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC3088] Length = 158 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P++ N G + R N +L LV P EK + I V N Sbjct: 4 VVLFEPEIPPNTGNIMRLCANTGC-ELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSHRN 62 Query: 77 LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +E + + ++A T + + + I+ G E Sbjct: 63 WEECLHAIRVKSPSTRVFACTTK--------------GSQAHTKAVFQSGDIILMGPETR 108 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL I + I P+ P SLN+S A ++++E + + Sbjct: 109 GLPINIIESTPAEYRIRIPMAPESRSLNLSNATAVILYEALRQT 152 >gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phytofirmans PsJN] gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phytofirmans PsJN] Length = 156 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + A+ A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAG-LDYHEYAQMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ +A D ++A T R F E A + +FG E Sbjct: 61 ADWAAFVAKESPDPARMFAFTTRGSGRFH------EHAFQSGDW--------FVFGAETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPDSVLDQFANQQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150 >gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150] Length = 184 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 17/160 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 21 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N+ ++ +E G++ +FGRE GL Sbjct: 78 DNLADFMS----------KNQQGRLHLVTKFADKTYSDEVYDDGKDHYFMFGREDTGLPE 127 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + + I P+N SLN+S V ++V+E + Sbjct: 128 EFMREHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 167 >gi|213023090|ref|ZP_03337537.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 60 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV P ENIG ARAM T LR+V+ + R + + +ID++ V Sbjct: 3 VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEV 60 >gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380] gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380] Length = 156 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74 I+LV+P++ N G +AR T L LV + G+ + A D VID VR + Sbjct: 8 IVLVEPEIPPNTGNIARLCGATG-TILHLVG-KLGFSLDDRYLKRAGLDYWEVID-VRRW 64 Query: 75 SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+EA D + Y + R++ + P + I+FG+E G Sbjct: 65 ESLQQLEEAFPDGRWWYTSKKAERSHVGADFQPGDF---------------IVFGKETAG 109 Query: 132 LTNEEIAL--SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172 L + +A ++ I P+ +P SLN+S A ++++E + + Sbjct: 110 LPADLLARNPAH-CIRIPIFSPRVRSLNLSTAAGIVLYEALRQT 152 >gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM 15641] Length = 300 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L N+G +AR+ + + + N R + + SSA A I +V + Sbjct: 110 IIVLDHITDAGNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQV-A 168 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL++A+ AR +N V E A NV ++ G E GL Sbjct: 169 NLQQAL----------ARLKNEGYWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARL 218 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +S P + SLN++Q+ + ++E + + +S ++ Sbjct: 219 TQEACDFFVSLPQRGVVSSLNVAQSATVCMYEWLRQNRLSLQE 261 >gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 158 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ + + +FG E GL Sbjct: 65 ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14] Length = 164 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P +EK+ + + V Sbjct: 4 IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLNEKSLKRA--GMDYWKDLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E ATT ++ P I+FG+E G Sbjct: 61 IDYQDFLEKNPGAKIYMATTKAHKVYTDVEYEPDCY---------------IMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 + E + + P+N SLN+ +V ++++E + + + E + Sbjct: 106 IPEEILVEHEEDCMRIPMNGDIRSLNLGNSVAIVLYEALRQNGFAGMNLSGELHEL 161 >gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 150 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ N T+L L+ P EK + + +++V+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYEKNDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145 >gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310] Length = 168 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 10/162 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 V++L D + N+G V R+ F + + L P + ++ + +D R Sbjct: 16 PLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVDW-RY 74 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132 F++ +A+ DL R R + + L + Q ++FG E G+ Sbjct: 75 FASATQAVEDL--------RERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGV 126 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + + + P SLN+S ++VWE + ++ Sbjct: 127 HQDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQKLLL 168 >gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 156 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G V R N QL LV P G+P + AR A + RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLDDARMRRAG-LDYHEYATMRVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +A D ++A T R F V P + +FG E Sbjct: 61 DSWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDW---------------FVFGSET 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E E I P+ P SLN+S V ++V+E Sbjct: 106 RGLSPERREWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii M21/2] gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii M21/2] Length = 168 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ +N G VAR +L LV P +K + + + Sbjct: 9 IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPMGFAIDDKKLKHA--GLDYWHYLDI--T 63 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +AD ARN A + ++FGRE GL Sbjct: 64 YYDGLADFF------ARNNG---PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114 Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S +V + V+E + Sbjct: 115 LVENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151 >gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222] gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32] gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222] gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32] Length = 159 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ + L R + K ++ + G ++FG E GL E Sbjct: 63 LEAFLEYLE-----NEREGDFRIFACTTKTTGHHVDAKFQQGD--VLMFGPETRGLPAEF 115 Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 152 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 34/166 (20%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72 I+L P++ N G + R+ N T L L+ P EK S SV+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---THLHLIKPLGFSLDEKQIRRS--GLDYWHSVKLT 57 Query: 73 VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + +E +A ++ YATT + + +N I+FG E Sbjct: 58 IWESFEEFLASDPEMRLFYATTKTKQKYS---------------DVRYQENDYIMFGPES 102 Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + + I+ P+ P+ SLN+S + ++++E + Sbjct: 103 RGIPEDILKQDPERC---ITIPMIPMGRSLNLSNSAAIILYEALRQ 145 >gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa] gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa] Length = 264 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + K ++LV PQ+ N G +AR ++ L LV P + + Sbjct: 74 EVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVG-LHLVGPLGFQVDDAKLKRA--GLD 130 Query: 67 VIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+V + E D R + K +LA + + + ++ Sbjct: 131 YWPYVVVKVHDSWAE-FQDYF-------RQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLV 182 Query: 125 FGRERWGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177 FG E GL E + +I P+ + LN+S +V + ++E Sbjct: 183 FGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQL 242 Query: 178 KNVKEQ 183 + E Sbjct: 243 QFPSED 248 >gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus selenitireducens MLS10] Length = 163 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++L +P++ N G +AR + L L++P ++ + SV+V Sbjct: 5 VVLYEPEIPANTGNIARTCA--GTHSHLHLIHPLGFSTDDRMLKRAGC--DYWPSVKVEH 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + F + E + + Q+ +FG+E GL Sbjct: 61 HDSFDALY---------SRYPEGAFYFIETIGEKNVYDFDYSDPDQDYFFVFGKETTGLP 111 Query: 134 NEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E A P L SLN+S ++V+E + + Sbjct: 112 GELTARFEEHCFRIPQTDLVRSLNLSNTAAIVVYEALRQQAFAP 155 >gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118] gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118] Length = 158 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ + + +FG E GL Sbjct: 65 TDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381] gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC BAA-381] Length = 161 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 26/169 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV PQ+ +N G + R N NL +L +V P EK+ + + ++ Sbjct: 4 IVLVHPQIPQNTGAIGRLCINANL-KLHIVKPTIFSLDEKSVRRA--GLDYWKKLNPTIW 60 Query: 75 SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L + +A F ++TT R F ++ I FG E Sbjct: 61 DSLDDFMAANGDKISRFWFSTTKSKRLYF---------------TADFKKDDFIFFGGES 105 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + + I+ P+ SLN++ +V ++ +E + +I + E Sbjct: 106 TGLPMNFMQKNWQNAITIPMGNEGRSLNLAMSVGIVAYEAIRQNIGAFE 154 >gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] Length = 152 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P + +N G + R +L LV P +K + + + RV Sbjct: 3 VILFSPDIPQNTGNIGRTCVALG-AELILVRPLGFSLLDKFVKRA--GMDYWEKLKLRVV 59 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+EA+ D ++ + + + + P +FG E GL Sbjct: 60 DSLEEALQDTEKKQLFFLSTKGKKYYAHASLP--------------LKGTFVFGSESKGL 105 Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E + + P+ SLN++ V ++++E + + + Sbjct: 106 PQEVLNAYHEQCYFVPMLQGTRSLNLATTVGIVLYEVIRQNYAN 149 >gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] Length = 170 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G V R N +L LV P S+K + + + + V + Sbjct: 16 IVLYQPEIPPNTGNVIRLAANTGC-RLHLVAPLGFDLSDKQLARAGLDYHDLTCLTVHPD 74 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E +A +T +R + + P + ++FG E GL Sbjct: 75 WAHCREVLAGRRMFAMSTRASRRHDRVDFQPGD---------------ALLFGPESRGLP 119 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P S+N+S AV ++V+E Sbjct: 120 EEILREFAPERRVRIPMRPTNRSVNLSNAVAVVVYEGWRQ 159 >gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 154 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 32/170 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N+G + R F L +L L+ P G +EK + + VF Sbjct: 4 IVLLEPRIPGNVGTIGRLC--FALNCKLHLIKPYGFGEITEKEVRRA--GLDYWYDLEVF 59 Query: 75 SNLKEAIADL--------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 E I D ATT K + + + G FG Sbjct: 60 EY--ENIEDFWSKNPFNDRHFLATT-------------KTKNVYFDAKFNVGDY--FYFG 102 Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 RE GL + ++ S + I+ P+ SLNI+ +V ++ +E + + S Sbjct: 103 REDAGLPEDLLSKSSHTCITIPMTNEARSLNIANSVSIVAYEALRQNFTS 152 >gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon 107 str. F0167] Length = 176 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L++P++ N G +AR+ N T+L L+ P SEK + A + + V+ Sbjct: 3 IVLLEPEIPANTGNIARSCVATN-TRLHLIEPLGFRISEKHIKRA--AMDYWEKLDYTVY 59 Query: 75 SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S++ + A H +ATT + + P + I+FG+E Sbjct: 60 SDINDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDY---------------IMFGKES 104 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ E + + I P+ SLN+S +V ++++E + Sbjct: 105 AGIPEEILSENEDGCIRIPMWGDIRSLNLSNSVAIILYEALAQ 147 >gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105] gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105] Length = 156 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N + QL LV P G+P E AR A D ++ V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTGV-QLHLVEPL-GFPLEDARMRRAGLDYHEYANMLVHP 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + +A T + +++ V + +G ++FG E G Sbjct: 62 GWEAFLDRQQPNPQRCFAMTTKGKHSPFDV------------KFQAGDY--LMFGSETRG 107 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E + P+ P SLN+S +V +MV+E Sbjct: 108 LSEEVRNWFARENWLRLPMRPESRSLNLSNSVAVMVYEAWRQ 149 >gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales bacterium 1_1_47] gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella excrementihominis YIT 11859] gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales bacterium 1_1_47] gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G + R N +L L+ P +K + + + F Sbjct: 4 IVLVHPEIPPNTGNIIRLSANTGC-KLYLIEPLGFNFEDKHMKRA--GLDYWEYADIKRF 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + + D ++A T + A L + + +FG E Sbjct: 61 PSYEAFLEAEKPDRDRMFAMTTK--------------AQQLVQEVSFKPGDWFVFGSEGS 106 Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E AL + ++ P+ P SLN+S +V + V+E Sbjct: 107 GLPQEVRALFDPAHMVRLPMRPNNRSLNLSNSVAITVYEAWRQ 149 >gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018] gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018] Length = 154 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 32/170 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N+G + R F L +L L+ P G +EK + + VF Sbjct: 4 IVLLEPRIPGNVGTIGRLC--FALNCKLHLIKPYGFGEITEKEVRRA--GLDYWYDLEVF 59 Query: 75 SNLKEAIADL--------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 E I D ATT K + + + G FG Sbjct: 60 EY--ENIEDFWSKNPFNDRHFLATT-------------KTKNVYFDAKFNVGDY--FYFG 102 Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 RE GL + ++ S + I+ P+ SLNI+ +V ++ +E + + S Sbjct: 103 REDAGLPEDLLSKSSHTCITIPMTNDARSLNIANSVSIVAYEALRQNFTS 152 >gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 154 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 23/168 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVF 74 ++L +P++ N G + R N +L LV P G+P E AR A D + V Sbjct: 3 AVVLFEPEIPPNTGNIIRLCANTGC-ELHLVEPL-GFPLEDARLRRAGLDYHEYAALTVH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +A+ + TT +R F AP + ++FG E G Sbjct: 61 KNWAACRQALVGRRMLAMTTRSSRPAFALAFAPGDV---------------LVFGPESRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E +A + + P+ P S+N+S AV + V+E + Sbjct: 106 LPAEVLADFADSERLRLPMLPGQRSMNLSNAVAVTVFEAWRQQGFAGA 153 >gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis Et1/99] gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis Et1/99] Length = 157 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + ++R ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +A + R F L K +G ++FG E GL Sbjct: 63 YE--------AFAASETPRRLF--ALTTKGTPAHSAVSYQAGDY--LLFGPETRGLPARV 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 158 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 24/166 (14%) Query: 13 KGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 K I+L+ P++ N G + R + N T L L+ P EK + + Sbjct: 5 KKLNIVLLYPEIPYNTGNIGRSAVLTN---TTLHLIKPLCFSLDEKQLKRAGLDYWHLVD 61 Query: 71 VRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++V+ + ++ I D YATT + I G+N ++FG Sbjct: 62 LKVWESYEDFINGNPDAVIYYATTKTKQKYT---------------DIKFGKNDFVMFGP 106 Query: 128 ERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + + ++ I+ P+ + SLN+S + ++++E + + Sbjct: 107 ESRGIPEDILNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQT 152 >gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX] gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13] gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/Jali20/OT] gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/TZ1A828/OT] gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 6276] gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 6276s] gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 70] gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis 70s] gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis D(s)2923] gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX] gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13] gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/TZ1A828/OT] gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis B/Jali20/OT] gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis Sweden2] gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis E/150] gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia trachomatis E/11023] gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC] gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC] Length = 151 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 I+L +P + +N G + R +L LV P ++K + + S+ V Sbjct: 2 RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+EA+ + I+ T + + + P + IFG E G Sbjct: 59 VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + A S+ + P+ SLN++ +V ++++E Sbjct: 105 LPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145 >gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] Length = 183 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 23/182 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFS 75 ++LV P++ N G V R N L L+ P G+P + A+ A D + V Sbjct: 4 VVLVQPEIPPNTGNVIRLCANTGCA-LHLIEPL-GFPIDHAKMRRAGLDYHEFTAITVHK 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------LNERIFSGQNV-------- 121 N + + A + + P A L SG Sbjct: 62 NWAAFLDSMRASMAAASGSYPQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLP 121 Query: 122 --GIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++FGRE GL +++ S + ++ P+ P SLN+S AV + V+E Sbjct: 122 GDCLVFGRETSGLP-DDVQDSLGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQQGFEG 180 Query: 177 EK 178 Sbjct: 181 AA 182 >gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae BGR1] Length = 156 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 27/171 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L LV P G+P E A+ A + R V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLVEPL-GFPLEDAKLRRAG-LDYHEYARMHVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + +A D ++A T R F V P + +FG E Sbjct: 61 RDWEALLAAEQPDPARMFAFTTRGSGRFHDRVFRPGDW---------------FVFGAET 105 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL +A + P+ P SLN+S V ++V+E + + Sbjct: 106 RGLGEAMLARFPDEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQAGFEGGE 156 >gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC 14685] gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC 14685] Length = 154 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L L+ P G+P + A+ A D S+ V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLIKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + A+A I+A T + + + VL +FG E G Sbjct: 61 ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105 Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + + A+ P+ P S+N+S V ++++E S Sbjct: 106 LPADILDSLPAVQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYSGG 153 >gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 152 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L+ P++ N G + R + N T L L+ P EK + + ++V+ Sbjct: 3 IVLLYPEIPYNTGNIGRSAVLTN---TTLHLIKPLCFSLDEKQLKRAGLDYWHLVDLKVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ I D YATT + I G+N ++FG E G Sbjct: 60 ESYEDFINGNPDAVIYYATTKTKQKYT---------------DIKFGKNDFVMFGPESRG 104 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + ++ I+ P+ + SLN+S + ++++E + + Sbjct: 105 IPEDILNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQT 146 >gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267] gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277] Length = 159 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 28/170 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV PQ+ +N G + R N NL +L ++ P SEKA + + ++ Sbjct: 4 IVLVHPQIPQNTGSIGRMCVNANL-KLHIIKPTVFDISEKAVRRA--GLDYWARLNPVIW 60 Query: 75 SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L E + + F YATT K G + FG E Sbjct: 61 ESLDEFLHANAQFEDRFFYATT-------------KAHKFYFEAEFKKGD--FLFFGGES 105 Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL E + +NAI P+ SLN++ + ++ +E + + S Sbjct: 106 TGLPMELMERNFANAI-KIPMGEHGRSLNLATSAGIIAYEAIRQNFAQSG 154 >gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum 5521] gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 277 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++IL + + N+G +AR F + + + R + SS A + +V Sbjct: 130 IVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEHVKVAKVNN 189 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 S ++E +IY R V ++ G E G+ Sbjct: 190 INSTIEELKEKGVWIYGADIRAEEYSHEVDY--------------SGPCALVIGNEGRGM 235 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + +I P+ SLN S A +M++E ++ Sbjct: 236 SKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEVLKGR 275 >gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str. Walvis Bay] Length = 151 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 25/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L PQ+ N G +AR T L L+ P ++ + + VRV Sbjct: 3 IVLYQPQIPPNTGSIARLCAATG-TPLHLIEPLGFSIDDRHLKRA--GLDYWEHVRVKVW 59 Query: 75 ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L A + AT AR P ++ ++ G E Sbjct: 60 PDWQAYLDSAQP--TRLVATCARFG-------TPHHEFSFASDD-------ALVLGPEAT 103 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL I ++ P+ SLN++ A ++++E + + Sbjct: 104 GLPMRIIESIPQLVRIPIWGQVRSLNLANAASVLLYEAYRQTGALQGR 151 >gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2] gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae F62] gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2] gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae F62] Length = 157 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V Sbjct: 6 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 63 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N + + L I+A T + + + VL +FG E GL Sbjct: 64 ENFDDCLKSLAGRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 109 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ P S+N+S V ++++E Sbjct: 110 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 150 >gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia extructa W1219] gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia extructa W1219] Length = 172 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 29/175 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +P++ N G + R F++ +L L+ P EK + ++V Sbjct: 4 IVLFEPEIPGNTGNIMRTCAAFHM-KLHLIEPLGFHLDEKHLKRA--GMDYRENVDYVKH 60 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + Y T ++ S + PK+ Q + ++FG+E G Sbjct: 61 INWDSFFQEHGNQGLFYYVTRYGKHTPDSFMYPKD------------QEIYLVFGKESTG 108 Query: 132 -----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L N E + + P+ SLN+S V L +E S + + Sbjct: 109 IPKPILANHE----DFCMRIPMVEKARSLNLSNCVALCAYEVNRQWGYSGLSHTE 159 >gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 150 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ LT L L+ P EK + + ++V+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + ++ I+FG E G Sbjct: 60 ESFEEFLEANKGIRIFYATTKTKQKYS---------------DVKYKEDDYIMFGPESRG 104 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + S I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNSERCITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 159 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 15/171 (8%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N+A +IL P++ N G V R N QL LV P +K + Sbjct: 2 NAAPQFHVILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYS 60 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++V +L A+A R K + A A V + + +FG E Sbjct: 61 RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPES 108 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + + P+ P SLN+S V ++++E + Sbjct: 109 RGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGA 159 >gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12] gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea DSS12] Length = 154 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N QL L+ P EK + D V Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYADLTCVTRY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + EA+ + TT +R + + ++ ++FG E G Sbjct: 61 KDFPSFLEAMDGKRIMACTTKGSRPHS---------------ELSFKKDDVLLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + + P+ + SLN+S AV ++ +E Sbjct: 106 LPMEIIESLPTSQRLKIPMAGMSRSLNLSNAVAIISYEAWRQ 147 >gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus stomatis DSM 17678] gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus stomatis DSM 17678] Length = 156 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+P++ N G + R N L LV P +K D + + Sbjct: 5 IVLVEPEIPHNTGNIIRTCANTG-AILHLVRPLGFSLDDKHLKR--CGLDYWDIADIQYY 61 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +E + D H F ++T + + ++FG+E Sbjct: 62 DSFEE-LEDKHKGAKFFFST---------------INGQKNHTDVKYEDGCFLVFGKETK 105 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPS--LNISQAVLLMVWECMEN 171 GL + I + I P+ + + LN+S AV ++V+E M Sbjct: 106 GLPKDLIEANMDTCIRIPMRGIEGARCLNLSNAVAIVVYEAMRQ 149 >gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus 5a2] Length = 177 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +N+ K P+I +L + + NIG R F L ++ L P + ++ A+ Sbjct: 16 EFKNALKIPLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAE 75 Query: 66 C--VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + V L +++ ++ E+ + + +I S + Sbjct: 76 ETVIWEYVPDTYTLLQSLK----------TKGYLIVALEQTDESIPLQSYQINSNNKCAL 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E +G+ E +A + + P + SLN+S ++ + +WE + Sbjct: 126 VFGNEVFGIQEEALAACDLALEIPQHGTKHSLNVSVSMGIAIWELTK 172 >gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX] gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX] Length = 268 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 13/172 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P++ SA+ ++L D N+G + R+ + L PR P +A S Sbjct: 108 PTVPEVVASARRI-VVLEDIVDHTNVGAIFRSAAGLGVDAAVL-APRCADPLYRRAVKVS 165 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + R+ + DL R L P A+ L E + Sbjct: 166 MGAVFTLPYARLTD-WASGLEDL--------RRSGFTLVALTPAADAVPLPEAVHRDGKY 216 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172 ++FG E GL++ + ++ P+ SLN++ A + +E M ++ Sbjct: 217 ALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLNVTAAAAIACYELMRSA 268 >gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437] Length = 180 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I LV+P++ N G +AR + L L+ P G+ +E + D VR + Sbjct: 31 ICLVEPEIPNNTGNIARTCAVTG-SVLHLIRPL-GFSTEDKYLKRSGMDYWYKVDVRYYD 88 Query: 76 NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E A F ATT R+ + +E I +FG+E GL Sbjct: 89 SFAEFTASFPGGRFFCATTKAQRSYTS--FSYREGDI-------------FVFGKESKGL 133 Query: 133 TNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + I P+ P+ S N+ + ++++E + + Sbjct: 134 PPEILETYRDTNIRIPMRPVVRSHNLGNSAAIILYEALRQT 174 >gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens SK114] gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens SK114] Length = 154 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P + + + V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + + I+A T + + + VL +FG E G Sbjct: 60 HENFEDCLKALEGRRIFALT--TKGSTRPDEVSFRKGDVL------------LFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + I P+ P S+N+S V ++++E Sbjct: 106 LPAEVLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147 >gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 181 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I +++ + E Q +FGRE GL Sbjct: 76 DSLEDFITQCQ-----------GKLHLISKFADKVYSEETYADDQPHYFLFGREDTGLPE 124 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 125 AFMREHTEKALRIPMNDDHVRSLNVSNTVCMIVYEALRQQ 164 >gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421] Length = 162 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 27/182 (14%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P A + ++LVDP++ N G VAR T L LV S+K Sbjct: 1 MPPAAM----GREAFHVVLVDPEIPPNTGNVARTCAATG-TSLHLVGTLGFQLSDKYLKR 55 Query: 61 SANADCVIDSV--RVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + + V +L + T+AR + L Sbjct: 56 A--GLDYWEHVDLHYHPDLGALLEQQSAQRFVLTSARRGVCLWD--FAFQPGDWL----- 106 Query: 117 SGQNVGIIFGRERWGLTNEEI-ALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E GL + + +++ P P SLN+S AV ++++E + Sbjct: 107 -------VFGSESRGLPEGLLSDERHPVVTIPLAEPAVRSLNLSNAVAVVLFESLRQLDP 159 Query: 175 SS 176 S Sbjct: 160 PS 161 >gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 159 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 16/165 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L +P++ N G + R N QL LV P +K + + R ++ Sbjct: 4 VVLFEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRA--GLDYHEYARMKIW 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWGLT 133 N+++ + + +++ +S + P + + V ++ G E GL Sbjct: 61 DNIEQCLE--------SLKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLP 112 Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ SLN+S A ++V+E Sbjct: 113 ESVRFMFPQKNWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFQP 157 >gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0470] gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0470] Length = 168 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 +L + +A + ++ G++ +FG+E GL Sbjct: 62 KDLADFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE I P+N SLN+S L+V+E + Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151 >gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090] gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945] gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02] gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18] gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140] gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19] gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11] gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18] gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1] gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332] gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679] gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035] gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2] gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945] gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae TCDC-NG08107] Length = 154 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N + + L I+A T + + + VL +FG E GL Sbjct: 61 ENFDDCLKSLAGRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ P S+N+S V ++++E Sbjct: 107 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147 >gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110] gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110] Length = 153 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 24/164 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++LV+PQ+ N G +AR N T+L LV P S++ + V++ Sbjct: 2 PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLH 58 Query: 75 SNLK----EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +L +A + + R ++ + ++ ++FG E Sbjct: 59 YHLDLVQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDW--------------LVFGSE 104 Query: 129 RWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL + ++ P+ +P SLN+S +V + ++E + Sbjct: 105 SEGLPLTFQEQCDQMLYIPMPHPKIRSLNLSVSVAVGLFEALRQ 148 >gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902] gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. CC9902] Length = 166 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 30/174 (17%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + N + L +P++ N G +AR F L L L+ P +++ + Sbjct: 1 MSIVNPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSVRRA--GL 57 Query: 66 CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V++ F +K+ + I + R L++ F + Sbjct: 58 DYWPHVQLSTHGSFEAMKQVLLPQSRIIGCSRRG-------------GSCLSDFEFQHGD 104 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166 V ++FGRE GL ++ + I++ P+ SLN+S A L+ + Sbjct: 105 V-LLFGREDTGLPDDVRDQCHTIVTIPMPGAADSSGQGGVRSLNLSVACALVTY 157 >gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1] gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] Length = 154 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+L P++ N G + R N L LV P G+P + A+ A D S+ V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N + + L I+A T + + + VL +FG E GL Sbjct: 61 ENFDDCLKSLADRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ P S+N+S V ++++E Sbjct: 107 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147 >gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 166 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 IIL +P++ N G + R T+L L+ P EK + V V+ Sbjct: 3 IILFEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKEIKRA--GLDYWKDLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N + + RN + A + + + I+FG+E G+ Sbjct: 60 ENYDDFL------------RRNPNAKIYMATTKARHVYTEVSYEPDCFIMFGKESAGIP- 106 Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 EEI L N I P+ SLN+S +V ++++E + Sbjct: 107 EEILLENKETSIRIPMIGDIRSLNLSNSVAIVLYEALRQQ 146 >gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218] Length = 157 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 30/173 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F EA D TT + ++ + G ++FG E Sbjct: 61 KDYQAFIAFLEARGDYRIFACTTKTTGH-------------HVDAQFQRGD--VLLFGPE 105 Query: 129 RWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E + ++ I P+ P SLN+S AV ++ +E + Sbjct: 106 TRGLPADLIESLPMAQRI-RIPMMPEARSLNLSNAVAIIAFEAWRQMGFEGAR 157 >gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 154 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 19/158 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L +P++ N G V R N + QL L+ P EK + + V++ N Sbjct: 5 VLFEPEIPPNTGNVIRLAANTGM-QLHLIEPLGFDLDEKKVRRAGLDYHALTQVKIHKNW 63 Query: 78 KEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + D + I+A T + + V +N ++FG E GL + Sbjct: 64 SDFLENVDYNRIFACTTKGSTRYTEV--------------AYEENDVLLFGPETRGLPMD 109 Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ P SLN+S +V + +E Sbjct: 110 VLQTFPQENWLRLPMVPDSRSLNLSNSVAIFTYEAWRQ 147 >gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM 20469] Length = 338 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 SA V++L N G + R+ + + N R A +SA A + Sbjct: 185 SANALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPI 244 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +V SNL A+ +L + +T E A G + ++ G Sbjct: 245 AQV-SNLPRALEELKAAGFWTCGST--------------EHATQSVWEAPMGGRLALVMG 289 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G++ + + P SLN++QA +M +E + + + Sbjct: 290 SEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMCYEWLRRTQEA 338 >gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 158 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A+A + ++A + R+ + + +FG E GL Sbjct: 65 VDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PTEVLESIPPQHRLRLPMRPGNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587] gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2] gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21] gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae 12129(1)] gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226] gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT 5369-93] gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587] gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2] gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226] gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae 12129(1)] gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21] gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT 5369-93] gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae LMA3894-4] Length = 158 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R +F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IA + I P+ P SLN+S AV ++ +E + Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158 >gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus JCSC5402] gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus JCSC5402] Length = 157 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 16/164 (9%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-- 69 I+L P++ N G +AR+ + T L L+ P +K + Sbjct: 1 MSSINIVLYQPEIPANTGNIARSCAATD-TDLHLIRPLGFSTDDKMLRRA--GLDYWKFV 57 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + +++E +N+ ++ + + + + + IFG+E Sbjct: 58 NITYYDSIEEFFE----------KNKGHYYLLTKFGKKPHTTFDYSNTDEKHYFIFGKET 107 Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+N SLN+S ++++E + Sbjct: 108 TGLPDWVKEKYMDTALRIPMNDNVRSLNLSNTAAILIYEALRQQ 151 >gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC2047] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL +P++ N G + R N QL ++ P +K + +V+ + + Sbjct: 4 IILFEPEIPPNTGNIIRLAANTGC-QLHIIKPMAFEFDDKRLRRAGLDYHEWANVQFYDS 62 Query: 77 LKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 E + + ++A T + A ++FG E GL Sbjct: 63 FAECCDNPAIERVFALTTK--------------ATCSYSETSYQAGDALMFGPESRGLPA 108 Query: 134 --NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ P SLN+S +V ++V+E Sbjct: 109 NIRDSLPE-QQRLRIPMLPDSRSLNLSNSVAVVVFEAWRQ 147 >gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parauberis NCFD 2020] gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parauberis NCFD 2020] Length = 181 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + +++ + + GQ IFGRE GL Sbjct: 76 DSLDDFLGKVD-----------GQIHLISKFAEKVYSDHNYDDGQAHYFIFGREDKGLPE 124 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + S + P+N SLN+S V ++V+E ++ Sbjct: 125 EFMREHSEKALRIPMNDEHVRSLNLSNTVCMIVYEALKQQ 164 >gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937] gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N + L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLASVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+A TT +R P + ++FG E G Sbjct: 61 RNYQDFLQAVAGRRIFACTTKGSR----PYDEPDYQPGDV-----------LLFGSETAG 105 Query: 132 LTNEEIA-----LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L ++I I P+ P SLN+S +V ++ +E Sbjct: 106 LP-DDIRNGFAPECR--IRIPMEPNCRSLNLSNSVAIISYEAWRQ 147 >gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9] Length = 263 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 19/183 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + G + L Q N+G + R + + L L N K + Sbjct: 96 MVKRCEENPIPITGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRA 155 Query: 61 SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 SA + +V NLK+ + D + AT + ++ Sbjct: 156 SAGQWFRLKK-QVSHNLKDTVQDCQRGGMQVVATLPTAELTYW--------------QVD 200 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E GL+++ ++N + P++P SLN++ + L+++E Sbjct: 201 WSLPSLILLGNEGAGLSDDLATMANIQVKIPLSPQVESLNVAISAALILYEAQRQKACGK 260 Query: 177 EKN 179 N Sbjct: 261 NTN 263 >gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2M] gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2] gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2] gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD2M] Length = 156 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A DL I+A T R + F P + +FG E Sbjct: 62 DWDAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + + P+ P S+N+S V ++V+E + Sbjct: 107 GLPAELLERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150 >gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens NRL30031/H210] gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens NRL30031/H210] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P + + + V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + + + I+A T + P E + + ++FG E G Sbjct: 60 HENFDDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + I P+ P S+N+S V ++++E Sbjct: 106 LPAEVLDNLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147 >gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem] gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem] Length = 158 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 24/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ N G +AR T L LV + G+ ++ A V + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAG-LDYWSEVEIHYW 65 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK+A F+Y T+ + ++ L G I+FG+E G Sbjct: 66 PDLPALKQAYPGSRFVY-TSKKAEKSY------------LAFTFLYGD--FIVFGKETKG 110 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 L E I + + P+ SLN+S + ++++E + + Sbjct: 111 LPEELIEANAQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQTGA 154 >gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3] gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis HAW-EB3] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N QL L+ P EK + D RV Sbjct: 4 IALFEPEIAPNTGNIIRLCANNGC-QLHLIEPMGFDLEEKKLRRA--GLDYSDLTRVTRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + A+ + TT +R + E + ++V ++FG E G Sbjct: 61 KDFESFLAAMDGKRIMACTTKGSRPHT--------------ELAYEKEDV-LLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + P+ SLN+S AV ++ +E Sbjct: 106 LPIEIIESLPTTQRLKIPMTANSRSLNLSNAVAIISYEAWRQ 147 >gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13] Length = 157 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + ++R ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRHAD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 IA N + + A + + ++FG E GL E Sbjct: 63 YAAFIA------------SENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147 >gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 180 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M Q SA I+L PQ+ +N G +AR N + L ++ P ++ Sbjct: 1 MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59 Query: 61 SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + D VR + +L+E + R+ +++ + G Sbjct: 60 A--GLDYWDKLDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDG 107 Query: 119 QNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 ++ +FGRE GL E+ + I P+N SLN+S V ++V+E + Sbjct: 108 KSHYFLFGREDKGLP-EDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW] Length = 265 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 16/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID--SVRVFSNLKEAI 81 N+G + R F L +L + + P PSE A + + F+ + Sbjct: 129 PHNLGAIVRTAAFFGLDRLVISDHPEQAQPSESAYRVAEGGFEYVQIYRADRFATAVRRL 188 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A+ + + T L + ++ G E GL E + Sbjct: 189 AESYRVVGTALGGH-------------PALGRLTGGPKPPAVLLGNEEDGLPAETLRACA 235 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P SLN++ ++ WE Sbjct: 236 ELATIPGAGQVQSLNVAATAAILAWEMTR 264 >gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida subsp. salmonicida A449] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G + R N +L L+ P +K + + V Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+A ++A T + + G ++FG E G Sbjct: 61 PSYEAFLAAVAP-ERVFACTTKGST------------AHSAAQFAPGD--ALLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + P+ P S+N+S AV + V+E Sbjct: 106 LPLEIIESLPFEQRLRIPMLPQSRSMNLSNAVAVFVYESWRQ 147 >gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 150 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ N T+L L+ P EK + + ++V+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 DSFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYEKNDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145 >gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 174 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 25/164 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 ++L P++ N G + R N + L LV P + + R V Sbjct: 23 TVVLYQPEIPPNTGNIIRLCANTGCS-LHLVKPLGFPLDSSKMKRA--GLDYHEFARLTV 79 Query: 74 FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N +E A+A I+A T + + ++ +FG E Sbjct: 80 HENWEECMQALAG-RRIFALT--TKGTARP------------DKAAFQAGDVFVFGPETR 124 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + N I FP+ P S+N+S V + V+E Sbjct: 125 GLPAEILDTLPENQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQQ 168 >gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402] gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7] gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402] gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7] Length = 246 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P N+G + R M FN T L ++ P + +S A I + F++ Sbjct: 96 VVLVNPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFDPRVIRASMGALFNI-NFEYFNS 154 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E + T ++ + A +++ + ++FG E GL ++ Sbjct: 155 FDEYL---------TKYPEREVYPLML--KGAKNIHQITAANNKHSLVFGNESSGLPDDY 203 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + P + SLN+S A+ + + Sbjct: 204 LKYGQS-VFIPHSDKIDSLNLSMALGITL 231 >gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 164 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L++P++ N G + R T+L L+ P ++K + D V V+ Sbjct: 3 VVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFRLNDKLIKRA--GLDYWDKLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++ + RN + + + + + ++FG+E G+ Sbjct: 60 CDYQDFLE------------RNPGAKIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPE 107 Query: 135 EEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ SLN+S +V ++++E + Sbjct: 108 EILLENQEQC---VRIPMWGDIRSLNLSNSVSIVLYEALRQ 145 >gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 150 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ LT L L+ P EK + + ++++ Sbjct: 3 IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLEANKGIRLFYATTKTKQRYS---------------DVKYEENDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus salivarius SK126] gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus salivarius SK126] Length = 169 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N++ ++ +E G + +FGRE GL Sbjct: 63 DNLADFMS----------KNQDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLP- 111 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S V ++V+E + Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152 >gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36] gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 31/172 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N +L L+ P +K + + V Sbjct: 4 IALFEPEIPPNTGNIIRLCANSGF-KLHLIEPLGFEWDDKRVKRA--GLDYHEFADVKRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + D TT K + A + ++FG E G Sbjct: 61 ANYQAFLDCVGDARIFACTT----KGTKYHHEAQYQAGDV-----------LLFGPETRG 105 Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L E + + + + P+ P S+N+S AV + ++E + K Sbjct: 106 LPPEVL---DTLPQEQKVRIPMLPESRSMNLSNAVSVFIYESWRQLGFAGSK 154 >gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava NJ9703] gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava NJ9703] Length = 157 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P + + + V Sbjct: 6 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLAV 62 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + + I+A T + P E + + ++FG E G Sbjct: 63 HENFEDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 108 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + I P+ P S+N+S V ++++E Sbjct: 109 LPAEVLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 150 >gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 154 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L ++ P +K + + V + + Sbjct: 4 IALYEPRIAPNTGNIIRLCANNGCH-LHIIEPMGFDFEDKKLRRAGLDYSDLAHVTRYPD 62 Query: 77 ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E + + TT +R+ +++ + ++FG E GL Sbjct: 63 YAVFAEQMNGRRILACTTKGSRHY---------------DQMDYQKGDVLLFGSETAGLP 107 Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + ++ ++ P++P SLN+S +V ++ +E Sbjct: 108 AELRDSFPADNLLKIPMHPTSRSLNLSNSVAIITYEAWRQ 147 >gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] Length = 153 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 35/169 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------RDGWPSEKARSSSANAD 65 +IL P++ N G + R N + +L LV P R G + S + +AD Sbjct: 4 VILYQPEIPPNTGNIIRLCANTGI-RLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHAD 62 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V L + R+R F A + + +F Sbjct: 63 WV----ECMDELGD-------------RDRRFF----AISTKGKQRYDLVTYSPGDAFLF 101 Query: 126 GRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + + + P+ SLN+S AV ++V+E + Sbjct: 102 GPESRGLPTDLLENFPEQHRLRVPMAAGSRSLNLSNAVAVIVYEAWRQT 150 >gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174] gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174] Length = 166 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L++P++ N G + R + T+L L+ P SEKA + + V Sbjct: 6 IVLLEPEIPANTGNIGRTCVATD-TKLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E + YATT A+ + ++ I+FG+E G Sbjct: 63 LDYEDFLEKNPNAKIYYATT---------------KALKTYTDVQYEEDCYIMFGKESAG 107 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + + P+ SLN+S +V ++++E + Sbjct: 108 IPEEILMEHKDNCVRIPMINEIRSLNLSNSVAIVLYEALRQ 148 >gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 169 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 25/172 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+PQ+ +N G +AR +L +V P +K + + + + Sbjct: 6 IVLVEPQIPQNSGNIARTCAVTG-ARLHMVGPMGFAIDDKKLKRA--GLDYWHQLDITYY 62 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + + F Y T+ R + V P ++FGRE GL Sbjct: 63 KDLADFFSKNKGPFFYFTSKGPRRHV-DVQYPD--------------GAYLVFGREDAGL 107 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + ++ + P+ LN+S AV + V+E + + + + Sbjct: 108 PEELLVRHEAD-CVRMPMRRGERCLNLSNAVAVGVYEVLRQWDFAGLETHGQ 158 >gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759] gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759] Length = 166 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 24/171 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R +L L+ P +EK + D V + Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTTY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ +A ATT + R + V + I+FG+E G Sbjct: 61 VNFEDFLAKNPGAKIYMATT-KARKKYTDVRFEDD--------------AYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + E + + I P+ P SLN+ +V ++++E + + + Sbjct: 106 IPEEILVDYKDTAIRIPMFPDIRSLNLGNSVAIVLYEALRQNDFPGLEEAG 156 >gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC 49176] gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC 49176] Length = 164 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 IIL +P++ N G + R T L L+ P S+KA + + V+ Sbjct: 3 IILHEPEIPANTGNIGRTCVATG-TALHLIRPLGFDISDKAVRRA--GMDYWKDLELYVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + ++N + A + +N I+FG+E G+ Sbjct: 60 EDFNDFV------------SKNPNARIYMATTKAKKAYTEVIYEENDFIMFGKESAGIPE 107 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + + P+ SLN+S +V +M++E + Sbjct: 108 EILIKYEDTSVRIPMIGEIRSLNLSNSVAIMLYEALRQQ 146 >gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147] Length = 178 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 14/173 (8%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P A+ I+L Q N+G V R+ + + L S K + Sbjct: 19 ALPCPAPPAREDCIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMG 78 Query: 64 ADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + NL++ +A H AT NNF + L+ R S Sbjct: 79 AHFALTLHERV-NLRDWLAGYPHRTLATALTEHNNF--------SLYELDLRPPS----A 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 IFG E G++ + +A ++A + P+ SLNI+QA + ++E M + S Sbjct: 126 WIFGNEGSGVSPDILAAADATVKIPMQGAVESLNIAQAATICLFEQMRQRLAS 178 >gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14] gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14] Length = 159 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G V R N QL LV P +K + ++V + Sbjct: 9 VILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQVHPD 67 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+A R K + A A V + + +FG E GL + Sbjct: 68 LDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDV 115 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + P+ P SLN+S V ++++E + Sbjct: 116 LDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGA 159 >gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter sulfurreducens PCA] Length = 164 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 24/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV+P++ N G +AR T L LV + G+ ++ A D + +R + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + A D F Y + R ++ G I+FG+E GL Sbjct: 67 SLDQLRQAWPDARFFYTSKKAAR-------------CYVDAGFREGD--FIVFGKETVGL 111 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E++ +N + P+ SLN+S A ++++E + + +++ Sbjct: 112 P-EDLLRANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQTGRLADR 158 >gi|255638690|gb|ACU19650.1| unknown [Glycine max] Length = 260 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S+K ++LV PQ+ N G +AR + L LV P + + Sbjct: 73 SSSKILQVVLVSPQIPGNTGCIARTCAASAVG-LHLVGPLGFQVDDTKLKRA--GLDYWP 129 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V V + ++ D H + R + K +LA + ++ + +IFG E Sbjct: 130 YVVV--KIHDSWEDFHNYF----RQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSET 183 Query: 130 WGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 GL E + I P+ + LN+S +V + ++E S + E Sbjct: 184 SGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSE 243 Query: 183 QNTPATKG 190 T+ Sbjct: 244 SCIDTTEE 251 >gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 162 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 34/171 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G + R N +L L+ P +K + D + ++ Sbjct: 4 IVLVRPEIHTNTGSIGRMCVNSGC-RLHLIKPLGFMLDDKHLKRA--GLDYWDKLDLVIW 60 Query: 75 SNLKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +L + + D F +ATT NR + N + G + FG E Sbjct: 61 ESLDDFLTQNIKFKD-RFFFATTKTNR-------------LYFNTKFQKGD--FLFFGAE 104 Query: 129 RWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GL + L I+ P++ SLN++ +V ++ +E + +I Sbjct: 105 GSGLP---LDLMKIKKENCITIPMSGDGRSLNLATSVGIITYEAIRQNINE 152 >gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136] Length = 180 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 16 SVEEFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTAL 75 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIF--SGQ 119 A+ +D + +EA+ +LH +VLA ++ + + + + Sbjct: 76 GAEYTVDW-KYCKQTQEAVNELH----------AEGYTVLAIEQCEGSTMLDHLVLDPNK 124 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 I+ G E G+ E + + + I P SLN+S +++WE Sbjct: 125 KYAIVMGNEVKGVQQEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWE 172 >gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM 16994] gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM 16994] Length = 156 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV+PQ+ N G + R N + L L+ P EKA + + V+ Sbjct: 4 IVLVNPQIPNNTGAIGRLCVNTG-SSLHLIKPIGFDIDEKAVRRA--GLDYWHKIDLHVW 60 Query: 75 SNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +++E + D H F +ATT + F+ G + FG E Sbjct: 61 ESIEEFM-DAHPIKERFFFATTKTDIPYFEH-------------EFQEGDY--LFFGSET 104 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ +E + A ++ P+ SLN++ + ++++E ++ Sbjct: 105 AGIPSEILEAYPKQTMTIPMTKEGRSLNLAISSGIILYEAIKQ 147 >gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 170 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 16/160 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P S+K + +V+ + Sbjct: 8 IVLFEPEIPANTGNIIRLCANSGC-QLHLIKPLGFDLSDKRLRRAGLDYHEFTAVKHHDD 66 Query: 77 LKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + + A+ + A + + +N ++FG E GL Sbjct: 67 YQAFLNNEGFYNTCVAS----------LFALTTKGYSAHSDVNYQKNDYLLFGPETRGLP 116 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ P S+N+S AV ++V+E Sbjct: 117 SRLLDSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQ 156 >gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37] gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas ingrahamii 37] Length = 154 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 I L +P++ +N G + R N L L+ P EK + + + + Sbjct: 4 IALFEPEIPQNTGAIIRLCANTGCV-LHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKN 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++ +A++ TT + + + ++FG E GL Sbjct: 63 YNDFLQAVSGKRIFACTTKTT---------------TFHSQANFQADDVLLFGPETRGLP 107 Query: 134 NEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + +A+ + P+ S+N+S AV + V+E Sbjct: 108 GEIL---DALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQ 147 >gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 194 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 89 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++V+E + Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVVYEALRQQ 177 >gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC 43768] Length = 261 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCVVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD--- 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R L + +FG E Sbjct: 168 IYPQADLEIWLARYEDRVFATALREEKQT------VLYGEDLCK------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATVCLFEQMRQRAA 260 >gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39] gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39] Length = 158 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R +F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQPGD--VLLFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IA + I P+ P SLN+S AV ++ +E + Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158 >gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 152 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72 I+L P++ N G + R+ N T L L+ P EK S SV+ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTN---THLHLIKPLGFSLDEKQIKRS--GLDYWHSVQLT 57 Query: 73 VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V+ + +E +A ++ YATT + + N I+FG E Sbjct: 58 VWESFEEFLASDPNMRLFYATTKTKQRYS---------------DVSYKANDYIMFGPES 102 Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ E + I+ P+ P+ SLN+S + ++++E + Sbjct: 103 RGIPEEILKKNPERC---ITIPMIPMGRSLNLSNSAAIILYEALRQ 145 >gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9303] Length = 166 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 28/175 (16%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + L +P++ N G +AR F + L L+ P G+ + A D Sbjct: 4 PSELSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPL-GFSLDDRYLRRAGLDYWP 61 Query: 69 DSVRVF----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +E + H + + R + + + + ++ Sbjct: 62 HVALSVHSDLDTFRECLPLNHRLIGCS---RFGGIPLRSMRFQTGDV-----------LL 107 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWECMEN 171 FGRE GL + + I + P+ SLN+S A ++ +E + Sbjct: 108 FGREDTGLPTKIRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQ 162 >gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas atlantica T6c] Length = 154 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + +V ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGFA-LHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ E+ TT + ++FG E GL Sbjct: 63 LQAYMESRQPKRIFACTT---------------KGTTFFAKAEYQLGDALLFGPETRGLP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ I + P+ P S+N+S AV + V+E Sbjct: 108 DDVIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYEAWRQ 147 >gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 244 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 VI+L D Q N+G + R+ +F + L + +EK S+ A + +R V Sbjct: 102 VIVLDDVQDPGNVGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIRGEV 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E I AT+ RN I + + ++FG E G++ Sbjct: 162 VDMLQELKRKGIRILATSLRNATPLH--------------EIAASERFALVFGNEGSGVS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + L++ + ++ F SLN++ A + ++ Sbjct: 208 EDVLYLADTHVYIEMD-TFESLNVAVAAGICMYTLKRR 244 >gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus neapolitanus c2] gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus neapolitanus c2] Length = 159 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 25/172 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N + +L LV P KA + + V Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGV-RLHLVEPLGFSMETKALRRA--GLDYHEFAEVTVH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ + TT + + + R +G ++FG E G Sbjct: 61 SDWAALRSVLDGRRLFAMTTKGSTSFY-------------AARFEAGD--VLVFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L +A +++ + P+ P SLN+S V + V+E + Sbjct: 106 LPPHILAEFDADSRLRLPMKPDSRSLNLSNTVAIAVYEVWRQLDFAGATETD 157 >gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens] Length = 223 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV PQ+ N G +AR + L LV P G+ E ++ A D VRV Sbjct: 44 VVLVSPQIPGNTGSIARTCAATCVG-LHLVEPM-GFKVEDSKLRRAGLDYWPFVVVRVHK 101 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + T + + K +LA + ++ + ++FG E GL Sbjct: 102 SWDD--------FFTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLVFGSEVDGLPAA 153 Query: 136 EIALSN------AIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 + + FP+N + SLN+S A + V+E + Sbjct: 154 ILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQ 196 >gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 154 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N + L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFAWDDKRIKRAGLDYHEFSHVQRHAS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + IYA T + + + ++FG E GL + Sbjct: 63 FEAYLEACKPKKIYACTTK--------------GSQFHHQAQYEAGDCLVFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E I + P+ S+N+S AV + V+E K Sbjct: 109 ELIQSLPNEQRVRIPMQANSRSMNLSNAVSVFVYESWRQLGFPGAK 154 >gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 182 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + VI+L D + NIG V R F + ++ L P+++ ++ A + Sbjct: 19 EAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGATETV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 N+ E I +L + + E AI LN+ ++ + + +IFG Sbjct: 79 VW-EHHENVLEVIENL--------KKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E +G+ E I L + I P SLNIS + ++VW+ Sbjct: 130 EVFGVNQEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWDLF 171 >gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis Nb-231] gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis Nb-231] Length = 169 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 25/171 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++P++ N G V R N + +L L++P + ++ + + RV + Sbjct: 16 VVLLEPEIPANTGNVIRLCANTGM-RLHLIHPLGFYMDDRRLRRA--GLDYREYARVEEH 72 Query: 77 LKEAIADLHFI-----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 A A + +A +A R F +V ++FG E G Sbjct: 73 AGYA-AFCRTVQPMRIFAFSASARRIFHAVRF--------------QPGDALLFGSESRG 117 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 L + + A++ P+ P SLN+S AV + V+E + + + Sbjct: 118 LPPNLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQLGFAGTQEL 168 >gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata D2] gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata D2] Length = 154 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N + L L+ P +K + V+ + Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVRRAGLDYHEFSHVKRHPS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ + A + K + + +G ++FG E GL E Sbjct: 63 LESYL----------ATEKPKKVYACTTKGSGPYHQAQFAAGD--CLLFGPETRGLPMEI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + P+ P S+N+S AV + ++E Sbjct: 111 IESLPNEQRLRIPMQPNSRSMNLSNAVAVFIYESWRQ 147 >gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii CS-505] Length = 263 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 19/173 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 G + L Q N+G + R + + L L N K +SA + Sbjct: 106 PMTGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKK 165 Query: 71 VRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +V NLK+ + D + AT + ++ I+ G Sbjct: 166 -QVSHNLKDTVQDCQRGGMQVVATLPTAELTYW--------------QVDWSLPSLILLG 210 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E GL++E ++N + P++P SLN++ + L+++E N Sbjct: 211 NEGAGLSDELATMANIQVKIPLSPQVESLNVAISASLILYEAQRQKTCGKNTN 263 >gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 154 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D V Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKLRRA--GLDYHDLAHVYRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F+ KEA+ D TT + N + G +IFG E G Sbjct: 61 KDFAAFKEAMGDRRLFACTTKTTNYHT-------------NAKFEQGD--VLIFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + P+ P SLN+S AV ++ +E Sbjct: 106 LPAEFIESLPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147 >gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704] gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704] Length = 163 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 31/187 (16%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P++ N G + R N T+L L+ P +EK + D + V Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAN---TRLHLIEPLGFRLNEKNLKRA--GMDYWDKLDVT 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + D RN + A + + I+FG+E G+ Sbjct: 59 TYID--YDDF--------IRRNPNAKIYMATTKATKAYTDVEYEPDCYIMFGKESAGIPE 108 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 E + + I P+ P SLN+ +V ++++E + + + +L Sbjct: 109 EILVKHKDDCIRIPMVPDIRSLNLGNSVAIVLYEALRQNAFAGM-------------DLE 155 Query: 194 SFLDYLE 200 L LE Sbjct: 156 GHLHRLE 162 >gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 172 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 29/175 (16%) Query: 17 IILVDPQLGENIGMVARAMW---NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+L P++ N G ++R F L L+ P +K + D+V++ Sbjct: 8 IVLYQPEIPANTGNISRTCAGTDTF----LHLIRPLGFSTDDKMLKRA--GLDYWDNVKL 61 Query: 74 F--SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +L+ EA D + T + V + + ++ IFG+E Sbjct: 62 VYHDSLEAFLEASKDGELYFIT-----KFGRHVYSDVSY-------QDTNKDYYFIFGKE 109 Query: 129 RWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL +E + + + P+ SLN+S L+++E + + + Sbjct: 110 TTGLPDELLQQ-HEETCLRIPMTDKIRSLNLSNTAALVIYEVLRQQNFGALEQAP 163 >gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 180 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 17/176 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M Q SA I+L PQ+ +N G +AR N + L ++ P ++ Sbjct: 1 MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59 Query: 61 SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + D VR + +L+E + R+ +++ + G Sbjct: 60 A--GLDYWDKLDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDG 107 Query: 119 QNVGIIFGRERWGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 ++ +FGRE GL + + I P+N SLN+S V ++V+E + Sbjct: 108 KSHYFLFGREDKGLPEDFMRQYEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546] gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546] Length = 158 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L++ D TT + V A + VL +FG Sbjct: 61 KDYQAFVEYLEKERGDYRIFACTT---KTTGHHVDANFQKGDVL------------LFGP 105 Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E GL E I I P+ P SLN+S AV ++ +E + Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158 >gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 154 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVR 72 ++L P++ +N G +AR N T+L L+ P EK + D ++D Sbjct: 3 VVLYQPEIPQNTGNIARTCALTN---TKLHLIKPLGFSLDEKHLKRA-GLDYWDLLDLA- 57 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V+ + ++ + ++N + A I + ++FGRE GL Sbjct: 58 VYDDFEDFL------------DKNPDPEIYVLTTHAKAFYSDIEYTGDAYLLFGRETAGL 105 Query: 133 TNEEIALS--NAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 +EI + + P+ + SLN+S +V ++++E + Sbjct: 106 P-DEIHSAYPDHRFRIPMRNHERARSLNLSNSVNIVLYEALRQ 147 >gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 158 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 -------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L E TT K + ++ + G ++FG E Sbjct: 63 YPAFLQYLNENRQGFRLFACTT-------------KASGHHVDAQFQQGD--VLLFGPET 107 Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + I + + P+ P SLN+S AV ++ +E Sbjct: 108 RGLPEDIIDSLPAEQRLRIPMMPDARSLNLSNAVAIIAFEAWRQ 151 >gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 157 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 28/165 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L++PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 7 RVVLINPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPYVKLMY 63 Query: 76 NLKEAIAD-LHF-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +L I D + T R +++ V ++ L +FG Sbjct: 64 HLT--INDFCDYQQKSGGRAIGFTVRGSSSY--VEYSYQSGDWL------------LFGS 107 Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E G+ + + + + P+ P SLN+S +V + ++E Sbjct: 108 ETDGIPADLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQ 152 >gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 154 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N + L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+A TT +R P + ++FG E G Sbjct: 61 RNYQDFLQAVAGQRIFACTTKGSR----PYDEPDYQPGDV-----------LLFGSETAG 105 Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI N I P+ P SLN+S +V ++ +E Sbjct: 106 LP-DEIR--NGFAPENRIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147 >gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115] Length = 184 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D ++ + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R K + E+ + + +FGRE GL Sbjct: 79 ESLGDFMEQMD------GRLYLISK-----FAEKVYSEEKFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S AV ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans 568] gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia proteamaculans 568] Length = 157 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRA--GLDYHEFASIRRH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 AD A+ N + + A + + ++FG E GL E Sbjct: 61 -----ADYAAFIAS-----ENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147 >gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4] gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4] Length = 160 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 30/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV+P++ N G +AR T L LV ++A + V + Sbjct: 9 IVLVEPEIPPNTGNIARLC---GATSTVLHLVGKLGFSTDDRALKRA--GLDYWSEVDIH 63 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 LK A FIY ++ +S + + A I+FG+E Sbjct: 64 YWEDLDALKSAYPGGRFIY----TSKKVPRSYVEMEFTAGDF-----------IVFGKET 108 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL +E+ + + + P+ SLN+S A ++++E + + Sbjct: 109 KGLP-DELIEANPDTAVRIPIFGRVRSLNLSTAAGIVLYEALRQT 152 >gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545] Length = 513 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 17/99 (17%) Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148 ATTAR R N ++ + AA +L G V ++FG ER GLTNEE+ ++A ++ P Sbjct: 197 ATTARPRENV-PLVTARNAAKLLAAEAKRG-KVAVLFGNERTGLTNEELGTAHAAVAIPT 254 Query: 149 NPLFP---------------SLNISQAVLLMVWECMENS 172 SLN+SQAV ++ +E + Sbjct: 255 AGQGSLCRKSLKYTGGTGPTSLNLSQAVGVIAYEMFLAA 293 >gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 150 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ LT L L+ P EK + + ++++ Sbjct: 3 IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLETNKGIRLFYATTKTKQKYC---------------DVKYEENDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + ++ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---VTIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium SS3/4] Length = 164 Score = 77.0 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 33/188 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R N T+L L+ P SEK + D V V+ Sbjct: 3 IVLYEPEMPANTGNIGRTCVATN-TKLHLIEPLGFKLSEKHLVRA--GLDYWDKLDVTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+ ++ + RN + + + +V I+FG E G+ Sbjct: 60 SDYQDFLK------------RNPGAKIYMATTKGEHVYTDVPYDPDVYIMFGPESRGIP- 106 Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 EEI + N I P+ SLN+S +V ++++E + + + Sbjct: 107 EEILVENRENCIRIPMWGDIRSLNLSNSVAIVLYEALRQNGFEKMT-------------M 153 Query: 193 LSFLDYLE 200 L +L Sbjct: 154 EGHLHHLH 161 >gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383] gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383] Length = 156 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + AR A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150 >gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149] gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149] Length = 166 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +P++ N G + R N T+L L+ P +EKA + D D VR + Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRA-GMDYWADLDVRTYI 61 Query: 76 NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N ++ + ATT A + + + I+FG+E G+ Sbjct: 62 NFEDFLEKNPGAKIYMATT---------------KAPKVYTEVQYEPDCYIMFGKESAGI 106 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + P+ SLN+ +V ++++E + Sbjct: 107 PEEILVNHKEDCVRIPMVGDIRSLNLGNSVAIILYEALRQQ 147 >gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270] Length = 194 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 89 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++++E + Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 177 >gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394] gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429] gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096] gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750] Length = 194 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 32 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 89 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++++E + Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 177 >gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232] Length = 182 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 77 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++++E + Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165 >gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301 gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS] gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131] Length = 182 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 77 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++++E + Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165 >gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1] Length = 182 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 20 IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ I H +++ G + +FGRE GL Sbjct: 77 DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++++E + Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165 >gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 156 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F S+ P + +FG E Sbjct: 62 DWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L] gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L] Length = 153 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L++PQ+ N G +AR TQL LV P S++ + V + Sbjct: 4 VVLINPQIPPNTGNIARTCAAT-TTQLHLVGPLGFEISDRYLKRA--GLDYWPYVDLKYH 60 Query: 75 SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++ + +I T N K PK+ ++FG E Sbjct: 61 DSFDAFVSYHQKQEGRWIGFTKRGTYNYIKFQFQPKDW---------------LLFGCET 105 Query: 130 WGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 GL + A + P P SLN+S + L ++E Sbjct: 106 TGLPPHVLEACQAKVFIPMTQPGVRSLNLSVSAALGLFEARRQ 148 >gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905] gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905] Length = 157 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + SV V Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNVV 59 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L + I A +++ ++ + ++ +++ +FG+E G Sbjct: 60 YHDSLDDFI----------AYSKDGDVYLIETYSDEPFTTHDFSDKERDIYFMFGKETTG 109 Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E N + P + SLN+S ++++E + Sbjct: 110 LPKEFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151 >gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC 19865] gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC 19865] Length = 158 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLRRA--GLDYHEYATLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ P + G +FG E GL Sbjct: 65 ADLTTALAAIAPKRVFALSTRS---SVRYDTP---------QFADGD--AFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + + P+ P SLN+S V +MV+E S + Sbjct: 111 PADVLESIPPQHRLRVPMRPDNRSLNLSNTVAVMVFEAWRQWDFSGGR 158 >gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268] gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268] Length = 170 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 32/169 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R + L L+ P ++K + + +R + + Sbjct: 3 IVLHEPEIPFNTGAIGRTCVATK-STLHLIKPYGFILNDKNIKKAGMDYWPLLKLREYIS 61 Query: 77 LKEAIADLH---------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +E +A + YATT ++ + + +P + I+FG+ Sbjct: 62 YEEFMAGVEEERKIALPKVWYATTKAHKTHTEVSFSPNDY---------------IVFGK 106 Query: 128 ERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ E + I P+ SLN+S +V ++++E + Sbjct: 107 ESAGIPEEILVDNEEQC---IRIPMLEEARSLNLSNSVAIILYEALRQQ 152 >gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 152 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++LV PQ+ N G +AR T+L LV P S++ + V + Sbjct: 3 VVLVHPQIPPNTGNIARTCAAT-QTELHLVEPLGFELSDRYLKRA--GLDYWPFVHLTCH 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + +A R + A ++FG E G Sbjct: 60 PDWPSFTQVVA---------KRGGRLIGFDTTGESNAFQFKFAADDW----LLFGSETDG 106 Query: 132 LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 L E + + + P+ P SLN+S +V + ++E Sbjct: 107 LPAEVLVACDDTVYIPMGQPGVRSLNLSVSVAIGLFEARRQ 147 >gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella frigidimarina NCIMB 400] Length = 154 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + SV N Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYSDLTSVTRHKN 62 Query: 77 ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A I TT +R + +I +N ++FG E GL Sbjct: 63 YTAFLEAMAGKRIIACTTKGSRPHT---------------QIAFQENDVLLFGPETRGLP 107 Query: 134 NEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I L+ + P+ SLN+S +V ++ +E + + Sbjct: 108 MDIIDATPLAQRL-RIPMTANSRSLNLSNSVAIISYEAWRQLGFAGAE 154 >gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80] gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52] gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395] gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457] gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33] gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2] gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX 330286] gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33] gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9] gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10] gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101] gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27] gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK 757] gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80] gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52] gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457] gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33] gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395] gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2] gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395] gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9] gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33] gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX 330286] gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10] gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101] gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27] gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK 757] Length = 158 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R +F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IA + I P+ P SLN+S AV ++ +E + Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158 >gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162] Length = 166 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L++P++ N G + R T+L L+ P SEKA + + V Sbjct: 6 IVLLEPEIPANTGNIGRTCVATG-TKLHLIEPLGFSLSEKALKRA--GMDYWKDLDVSTY 62 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E + YATT A+ + + I+FG+E G Sbjct: 63 LDYEDFVEKNPNAKIYYATT---------------KALKTYTDVQYEDDCYIMFGKESAG 107 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + EEI + + + P+ SLN+S +V ++++E + Sbjct: 108 IP-EEILMEHKENCVRIPMINDIRSLNLSNSVAIVLYEALRQ 148 >gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 158 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYTPLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ + + +FG E GL Sbjct: 65 ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 178 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ +++L D + NIG V R F + ++ L P+++ ++ A + Sbjct: 19 KSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGATETV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 N+ E I +L + N + E+A+ L + ++ Q ++FG Sbjct: 79 AW-EHHENVLEVIENL--------KKENVLTLAIEQVESAVFLQDFQVEKNQKYALVFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E +G++ E +A+ + I P SLNI+ + ++VW+ + Sbjct: 130 EVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQ 172 >gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 153 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L E + L ++A T + + F V +FG E GL Sbjct: 61 QSLAECLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ P SLN+S V + V+E Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A ++D Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLD- 167 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++S +L+ +A ++AT R L E +FG Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275] gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568] Length = 261 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A ++D Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD- 167 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++S +L+ +A ++AT R L E +FG Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 153 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 II +P++ N G R + L LV P G+ E ++ A D + V+ Sbjct: 4 IIYFEPEIAGNSGAAIRLSACTG-SMLHLVEP-FGFDMEDSKLRRAGLDYHDLAHVQTHP 61 Query: 76 NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++A A + IYA T A I ++FG+E GL Sbjct: 62 DLEDAFAGIEGNIYAFTG--------------HATTFYGDISYQDGDALLFGKESTGLPQ 107 Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ P SLN++ + ++++E Sbjct: 108 WVLDHPQVKLAARIPMLPERRSLNLTNSASIVLYEAWRQ 146 >gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp. Re1] Length = 167 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 32/179 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++P++ +N G +AR + + L L+ P +K + + VR + + Sbjct: 11 VVLLEPEIPQNTGNIARTCAATD-SVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYYGS 69 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E + T A + + ++FG+E GL Sbjct: 70 YLEFEEKNPGGCKYFLTT----------------KAKQCYADVSYEPDCYLVFGKETAGL 113 Query: 133 T------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 N E I P+ SLN+S +V ++V+E + + K Sbjct: 114 PVPLLKANRE-----RCIRIPMTDEARSLNLSNSVAIVVYEALRQMGFNGLKTAGPSKA 167 >gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] Length = 153 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 ++LV P++ N G VAR +L LV P S++ + A Sbjct: 4 VVLVAPEIAPNTGNVARTCAVTG-ARLHLVRPLGFRLSDRLLKRAGLDYWAHVAWQVHDT 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +L A+ F Y L P+ + G ++FG E GL Sbjct: 63 WDDLLAALPGARFCY-------------LDPRGSLWYSQMDFAPGD--VLVFGSESRGLP 107 Query: 134 N---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 EE ++ P+ P SLN++ V L+++E Sbjct: 108 PGLMEE--RPGPVLRVPMRPGLRSLNLASTVALVLYEAYRQQGFPG 151 >gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 160 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 23/159 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G VAR +T L L+ P ++ + +VR+ Sbjct: 3 IVLYEPEIPPNTGNVARLCAATGVT-LNLIEPLGFKLEDRYLKRA--GLDYWPNVRLQVW 59 Query: 74 ---FSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +EA+AD + T+A++ V + ++FG E Sbjct: 60 PCWSDFTREALADGRAGRLVFTSAKSAGGSVPVH-----------HFAFDPDDFLVFGPE 108 Query: 129 RWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVW 166 GL E + LS + P+ S+N+S A ++++ Sbjct: 109 TRGLPQEILELSPHRVRIPMLEGRVRSINLSTAAGIVLY 147 >gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 157 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 24/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++L++PQ+ N G +AR T+L LV P S++ + V++ Sbjct: 7 RVVLINPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPHVKLMY 63 Query: 74 FSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + A + R +++ V ++ L +FG E Sbjct: 64 HLTIDDFCAYQQKSGGRAIGFSVRGSSSY--VEYSYQSGDWL------------LFGSET 109 Query: 130 WGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 G+ + + + + P+ P SLN+S +V + ++E Sbjct: 110 DGIPADLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQ 152 >gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586] gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586] Length = 158 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERETFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 IA + I P+ P SLN+S AV ++ +E Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 261 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A ++D Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD- 167 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++S +L+ +A ++AT R L E +FG Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL S4-120] gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL S4-120] Length = 169 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E A F Y T + V + + +N +FG+E Sbjct: 61 YDSLDEFFEKNAGGEFFYIT-----KFGRHVYS-------DIDYSDPNKNYFFVFGKETT 108 Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL +E+ +N + P+ SLN+S ++ +E + Sbjct: 109 GLP-DELLQNNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1002] gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1002] Length = 156 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P + + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDTKMRRA--GLDYHEYAEMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ IA D ++A T R F P + +FG E Sbjct: 61 TDWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDW---------------FVFGAET 105 Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 106 RGLPDTVLERFTNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 261 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A ++D Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLD- 167 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++S +L+ +A ++AT R L E +FG Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 156 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + ++R ++ Sbjct: 3 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A TA L K +G ++FG E GL Sbjct: 62 YE----------AFTASEAPQRLFALTTKGTPAHSAVSYQAGDY--LLFGPETRGLPARV 109 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 110 LNALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 146 >gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS] gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS] Length = 156 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++LV+P++ N G + R N QL L+ P G+P + A+ A D ++V+S Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPL-GFPLDDAKMRRAGLDYHEFAKIKVYS 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + D ++A T + +FG E G Sbjct: 62 SWSDFLQKMSPDPSRMFALTT--------------HGSPCFSKTSFHAGDLFVFGSETKG 107 Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ EI I P+ P SLN+S +V ++V+E Sbjct: 108 LS-LEIHRFFPEGHQIRLPMRPHNRSLNLSNSVAIVVYEAWRQ 149 >gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300] gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300] Length = 180 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 28/174 (16%) Query: 10 NSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 N + PV I+L +PQ+ +N G +AR N + L ++ P ++ + Sbjct: 7 NDKRKPVMTNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GL 63 Query: 66 CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNV 121 D + + + +L++ ++ V + A + + SG++ Sbjct: 64 DYWDKLEIYFYDSLEDFMS-------------QMKGQVYLISKFAEKVYSEANLASGEDQ 110 Query: 122 GIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 +FGRE GL E+ + + P+N SLN+S V ++V+E + Sbjct: 111 YFLFGREDKGLP-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC 29256] gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC 29256] Length = 154 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 29/165 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P G+P + A+ A + + V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFAKLTV 59 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + + I+A T + + V + +FG E G Sbjct: 60 HENFEDCLKALEGRRIFALTTKGKTRPNEVSF--------------VEGDVFLFGPETRG 105 Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + + + P+ P S+N+S V ++++E Sbjct: 106 LPAEIL---DTLPEGQKLRLPMKPGSRSMNLSNTVAVILFEAWRQ 147 >gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus vestibularis F0396] gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus vestibularis F0396] Length = 169 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N ++ E G++ +FGRE GL Sbjct: 63 DNLADFMS----------KNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLP- 111 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S V ++V+E + Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152 >gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5] gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5] Length = 165 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P++ N G + R N T+L L+ P +EKA + + V Sbjct: 4 IVLHEPEIPANTGNIGRTCVASN---TRLHLIGPLGFKLNEKALKRA--GMDYWSDLDVT 58 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F++ E ATT + + P + I+FG+E Sbjct: 59 TYIDFNDFMEKNPGAKIYMATTKAPKVYTEVHYEP---------------DCFIMFGKES 103 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ E + + P+ SLN+ +V ++++E + Sbjct: 104 AGIPEEILVEHKENCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969] gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969] Length = 167 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + S++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62 Query: 77 LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + AT AR + A + + N ++FG E G Sbjct: 63 YQAFLDSEKLDGAQSAGATPAR-------LFALTTKGTPAHSAVSYQANDYLLFGPETRG 115 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ S+N+S AV ++V+E Sbjct: 116 LPATVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157 >gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16] gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16] Length = 156 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 29/165 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G V R N QL LV P G+P E AR A + RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +A D ++A T R F V P + +FG E Sbjct: 61 ESWDALMASEQPDPARMFALTTRGSTPFGEVAFRPGDW---------------FVFGSET 105 Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E + I P+ P SLN+S V ++V+E Sbjct: 106 RGLSPERRDWFPPAQRI-RLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 3_1_27] gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp. 3_1_27] Length = 150 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ LT L L+ P EK + + ++++ Sbjct: 3 IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + + YATT + + +N I+FG E G Sbjct: 60 ESFEEFLETNKGIRLFYATTKTKQKYC---------------DVKYEENDYIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 261 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++S +L+ +A ++AT R L E +FG E Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62] Length = 261 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++S +L+ +A ++AT R L E +FG E Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184] gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184] gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia cenocepacia MC0-3] Length = 156 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N L L+ P G+P + AR A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150 >gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379] gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM 2379] Length = 157 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV+P++ N G +AR T L LV P ++ + SV +V+ Sbjct: 9 IVLVEPEIPPNTGNIARLCAATG-TVLHLVEPLGFSIDDRQLKRA--GLDYWGSVTLKVW 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L++ + R R L+ K L G I+FG+E GL Sbjct: 66 QRLEQVWQEF-------PRGRFF---YLSTKAGRSYLAADFRPGD--FIVFGKETKGLPA 113 Query: 135 EEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172 E + S I+ P+ SLN+S + ++++E + + Sbjct: 114 EILEWNSETAITIPMPANAVRSLNLSTSAGIVLYEALRQA 153 >gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 179 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 16 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 72 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N ++ E G++ +FGRE GL Sbjct: 73 DNLADFMS----------KNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLP- 121 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S V ++V+E + Sbjct: 122 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 162 >gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] Length = 156 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 33/174 (18%) Query: 17 IILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR- 72 I+L++P++ N G + R +L L+ P EKA S V+ Sbjct: 3 IVLLNPEIPYNTGNIGRTCVLTKT----KLHLIKPLGFSLDEKAVKRS--GLDYWKDVQL 56 Query: 73 -VFSNLK----EAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ + + E I + ++ +ATT R + G+N ++F Sbjct: 57 YVWEDFEHFFKENIENRNVNLYFATTKTKRRYS---------------DVNYGKNDYVMF 101 Query: 126 GRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E G+ E + I+ P+ PL SLN+S + ++++E + + EK Sbjct: 102 GPESRGIPEEILNRYKENNITIPMLPLGRSLNLSNSAAIILYEALRQNDFEYEK 155 >gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 172 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 19/173 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P S+K + DSV+V Sbjct: 5 IVLFEPLMPANTGNIARTCA--GTNAVLHLIKPLGFEISDKTLKRA--GLDYWDSVKVVY 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWG 131 NL + +A T ++R V A + + +V +FG+E G Sbjct: 61 HDNLPDFLA--------TVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYFLFGKETTG 112 Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 L + ++ I P N +LN+S +V ++++E + + + E Sbjct: 113 LPEAFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHE 165 >gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus fusiformis ZC1] gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus fusiformis ZC1] Length = 157 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 29/166 (17%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + SV + Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNIV 59 Query: 75 --SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +L++ I D++ + + N+ +++ +FG+ Sbjct: 60 YHDSLEDFIEYSKNGDVYL--------------IETYSDEPFTKNDFSDQDRDIYFMFGK 105 Query: 128 ERWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + + + P + SLN+S ++++E + Sbjct: 106 ETTGLPKDFAYERRDMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151 >gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15] Length = 280 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 20/188 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P + V +L + N+G + R + F ++ + + R S A +S A Sbjct: 103 PPPNSGKPNLVFVLDGVEDPHNLGAIVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGAL 162 Query: 66 CVIDSVRVFSNLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 SV +NL + +++ +RN + ++ + + Sbjct: 163 EWF-SVVRVTNLHRFLERQKKRGYWVVGLDGASRNPLR--------------QLEWDRPL 207 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++ G E GL + ++S P P SLN+S A + + N++ E Sbjct: 208 MVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVSNAAAVTCYHLR-NTVSVPEFATP 266 Query: 182 EQNTPATK 189 + PA Sbjct: 267 LKTAPADH 274 >gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 261 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++S +L+ +A ++AT R L E +FG E Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14] Length = 153 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + + +FG E GL Sbjct: 63 LQSCLEALGQSRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + + P+ SLN+S V + V+E Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 248 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q+ + VIIL N+G V+R+ + + N R SSA A + Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + + T +R + + E A L + + ++ G E Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHASDLIWKANLKGKIALVMGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G++ + + ++ P+ SLN++QA ++E + Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246 >gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 167 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 5/157 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + A + ++ L K + ++FG E GL Sbjct: 63 YQAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDY--LLFGPETRGLPPFV 120 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157 >gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23] gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str. Zhang] gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23] gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str. Zhang] gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W] gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II] Length = 169 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N + L L+ P +K + VR+ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWQRVRIIYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + AT ++ + + + Q+ +FG+E GL Sbjct: 62 DSLDD-------FMATVKEPQHLYLITKFADQT-YSDRDYADIDQDHYFLFGKETTGLPE 113 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P+ +LN+S L+++E + Sbjct: 114 GFMRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQ 152 >gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium profundum 3TCK] gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium profundum 3TCK] Length = 154 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 I L +P++ N G + R N L L+ P EK + + + + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F+ KEA+ TT + N + G +IFG E GL Sbjct: 63 FAAFKEAMVGRRLFACTTKTTNYHT-------------NAQFAEGD--VLIFGPETRGLP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P++P SLN+S A ++ +E Sbjct: 108 AEFIESLPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQ 147 >gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str. F0108] Length = 177 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 9/165 (5%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + ++K P V++L + + N+G V R+ F + + L PS + ++ A+ Sbjct: 16 EFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + F+ +A+ +LH A F + E G+ ++ Sbjct: 76 DSVTW-KYFAETSDAVDELH------ANGTKVFAVEQVANATMLQSLE-TKGGERYAVVL 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ + + + P SLN+S A ++VWE + Sbjct: 128 GNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAK 172 >gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei F0415] gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei F0415] Length = 182 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L +PQ+ N G +AR N + L ++ P +++ + D +R + Sbjct: 20 VVLFEPQIPANTGNIARTCAATN-SPLHIIRPMGFPINDRKMKRA--GLDYWDKLDIRFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + +++ Q+ IFGRE GL Sbjct: 77 DSLLEFLDKCQ-----------GQVHLVSKFAQKTYSEVNYADDQDHYFIFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + I P+N SLN+S V ++V+E + Sbjct: 126 DFMREHVTKAIRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165 >gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223] gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451] gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451] gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223] Length = 158 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + L R R F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 IA + I P+ P SLN+S AV ++ +E Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 162 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P++ N G R T L LV P + + + +R+ ++ Sbjct: 9 IVFYEPRIPGNTGAAIRLAACTGAT-LHLVEPLGFSFEDSHLKRAGLDYHDLADLRIHAD 67 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +L I+A T N+F + + +FG E GL Sbjct: 68 FEALLRELPDSRIFAFTGHTSNSF--------------ADVAYRETDAFLFGPEPTGLPA 113 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + IA A + P+ P SLN++ + ++V+E Sbjct: 114 DVIAHPAVTAAVRIPMMPHLRSLNLANSASIVVYEAWRQ 152 >gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102] gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102] Length = 154 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P + + + V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + + I+A T + P E + + ++FG E G Sbjct: 60 HENFEDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + I P+ P S+N+S V ++++E Sbjct: 106 LPAEILDSLPAGQKIRLPMMPGSRSMNLSNTVAVILFEAWRQ 147 >gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM 12885] Length = 153 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV P++ N G VAR +L LV P S++ + + V V Sbjct: 4 VVLVAPEIAPNTGNVARTCAVTG-ARLHLVRPLGFRLSDRLLKRA--GMDYWNHVEWHVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E + A L P + + G ++FG E GL Sbjct: 61 DTWDELL----------AALPEARFCYLEPDGSQRYTDVTFRPGD--ALVFGSESRGLPP 108 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P SLN++ V L+++E Sbjct: 109 EFLRQRPGPTLRVPMRPGLRSLNLASTVALVLYEAYRQ 146 >gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus sphaericus C3-41] gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region [Lysinibacillus sphaericus C3-41] Length = 157 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + SV + Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNIV 59 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L + I +R+ + + + + ++ +++ +FG+E GL Sbjct: 60 YHNSLDDFIE--------YSRDGDVYL-IETYSDEPFTTHDFSNKERDIYFMFGKETTGL 110 Query: 133 TNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + N + P + SLN+S ++++E + Sbjct: 111 PKDFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151 >gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG 18311] gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus CNRZ1066] Length = 184 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 23/181 (12%) Query: 1 MTPYAPQL----QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 MTP ++ I+L +P++ +N G +AR N + L ++ P +K Sbjct: 1 MTPGDMAFFMSRRSQMSRNHIVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDK 59 Query: 57 ARSSSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + D + + + NL + ++ +N ++ E Sbjct: 60 KMKRA--GLDYWDKLDITYYDNLADFMS----------KNHAGRLHLVTKFADKTYSEEV 107 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 G++ +FGRE GL E+ + I P+N SLN+S V ++V+E + Sbjct: 108 YADGEDHYFMFGREDTGLP-EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 166 Query: 172 S 172 Sbjct: 167 Q 167 >gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970] gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970] Length = 167 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + S++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62 Query: 77 LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + AT AR + A + + N ++FG E G Sbjct: 63 YQAFLDSEKLDGAQSAGATPAR-------LFALTTKGTPAHSAVSYQANDYLLFGPETRG 115 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + I P+ S+N+S AV ++V+E Sbjct: 116 LPARVLDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157 >gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104] gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22] gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322] gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis R712] gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis S613] gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis PC1.1] gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TUSoD Ef11] gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4248] gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0855] gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2134] gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0109] gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0411] gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 512] gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0102] gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 516] gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104] gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22] gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322] gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis R712] gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis S613] gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis PC1.1] gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TUSoD Ef11] gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0411] gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0109] gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2134] gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0855] gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4248] gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 512] gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0102] gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis DAPTO 516] gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2137] gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4000] gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0017] gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0027] gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX2141] gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX4244] gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0012] gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0031] gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0043] gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0312] gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0645] gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1302] gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1341] gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1346] gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0309B] gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0309A] gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62] gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1467] Length = 168 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 +L +A + ++ G++ +FG+E GL Sbjct: 62 KDLAAFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE I P+N SLN+S L+V+E + Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151 >gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 151 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 ++L P++ N G VAR ++ L L+ P G+ E A D + V+ Sbjct: 3 VVLFQPEIPPNTGNVARLCAAMQVS-LHLIEPL-GFKLEDRYLKRAGLDYWPHVDMAVWP 60 Query: 76 NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L I + + T+AR R +N ++FGRE GL Sbjct: 61 DLDAYIRNSGAGRRLVLTSARRGAALH--------------RFEFTENDSLVFGRETSGL 106 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E I LS + P+ S+N+S A +++++ + ++ + E Sbjct: 107 PPEVIGLSPHHVRIPIKGEVRSINLSTAAGIVLFQALVSAGLVGE 151 >gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae 7-10-1-b] Length = 248 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 11/162 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N + V+IL N+G +AR+ L + N R SSA A + Sbjct: 96 NGGRALVVILDHLTDAGNLGAIARSAEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLP 155 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V NL + + AR + V E + R + ++ G E Sbjct: 156 VAQV-PNLVQVM----------ARLKERGFWVAGASEQTDDVIWRSNLKGKIALVMGNEA 204 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ + ++ P SLN++QA ++E + Sbjct: 205 EGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACMYEWLRQ 246 >gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC BAA-835] gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC BAA-835] Length = 154 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I++ P++ N G R ++L L+ P EK + V V+ Sbjct: 7 IVMFHPEIPHNTGAAGRLALATG-SRLHLIKPLGFSLDEKHVRRT--GLDYWAKVDLHVW 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E A F L+ K + +G ++FG E GL Sbjct: 64 DSLEELKQ--------AAAPGAQFW-YLSTKAPRSHWDAVFHAGDY--LVFGPESRGLPE 112 Query: 135 EEI-ALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172 + ++ ++ P+ SLN+S AV ++++E + + Sbjct: 113 SMLREHADTALTIPMPGEGARSLNLSTAVAVVLYEGLRQT 152 >gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 158 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 29/173 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L++ TT + V A + VL +FG Sbjct: 61 KDYQAFVEYLEKEREGYRIFACTT---KTTGHHVDANFQKGDVL------------LFGP 105 Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E GL E I I P+ P SLN+S AV ++ +E + Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158 >gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159] gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159] Length = 182 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L PQ+ N G +AR N T L ++ P +K + D + V + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + ++ +E ++ +FGRE GL Sbjct: 77 DSLNDFMNICS-----------GKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + S + P+N SLN+S V ++V+E + Sbjct: 126 EFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165 >gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia vietnamiensis G4] Length = 156 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAESPDPTRMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAELLERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus ND03] Length = 169 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N ++ E G++ +FGRE GL Sbjct: 63 DNLADFMS----------KNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLP- 111 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S V ++V+E + Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152 >gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110] Length = 291 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 12/171 (7%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + ++ PVI++ N+G + R L + R + +A A Sbjct: 129 QAKANSDAPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGAL 188 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV NL A+ L + F E L++ F G +G++ Sbjct: 189 ESFPVARVV-NLSRALETL---------KKEGFWIYGTVAEGGKRLHDFNFEGA-IGLVI 237 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL+ + ++S P+ PSLN S A + ++E Sbjct: 238 GSEGSGLSLLTQRCCDQLVSIPLEGKTPSLNASVAAAINLYEIYRQRWSEK 288 >gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 287 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 16/186 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+ + N+G + R + L V S K +SA + + V Sbjct: 113 VIIAQGRDPGNVGTIIRTADAMG-ARAVLTVAGTADVTSPKVVRASAGSVFHLP-VIPHP 170 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 A+ LH + T+ R + E G E G Sbjct: 171 AFGAAVDALHARGARVLGTSGGPRAVPLP---------AVEEEGALAGPHAWALGNEARG 221 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 L +E+A + +++ P+ L SLN++ A + ++ + A G Sbjct: 222 LDADEVAACDLLVAIPMTGLAESLNVASAAAVCLYASQRARGTGRPDGAVDGRGGARAGT 281 Query: 192 LLSFLD 197 ++ + D Sbjct: 282 VVRWHD 287 >gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307] Length = 152 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+LV+P++ N G +AR T L LV P +++ + V + Sbjct: 2 PQIVLVEPEIPPNTGNIARTCAATE-TPLHLVEPLGFEINDRQLKRA--GLDYWPHVPLV 58 Query: 75 --SNLKEAIADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S+ E + + R +R+ +S L A +IFG E Sbjct: 59 QHSSWGEFLKHHQHH---SGRLLGFSRHASRSYLEIDYRADDW-----------LIFGCE 104 Query: 129 RWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 GL E A + ++ P+ SLN+S A ++++E Sbjct: 105 TKGLAPEVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQ 148 >gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661] gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661] Length = 157 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +A + + A + + ++FG E GL + Sbjct: 54 FTAIKHHADYAAFLSA---EAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LNALPAQQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311] gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311] Length = 176 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 28/168 (16%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SV 71 K + L +P++ N G +AR F L L L+ P G+ E A D + Sbjct: 18 KPLRVALFEPRIPPNTGNIARTCAAFGLP-LDLIEPL-GFSLEDRYLKRAGLDYWPHVDL 75 Query: 72 RVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ++ E++A + + R I+L F +V ++FGRE Sbjct: 76 TIHKDVDAFFESLAQPSRVIGCSRRG-------------GILLRNMEFQKGDV-LLFGRE 121 Query: 129 RWGLTNEEIALSNAIISF--PVN------PLFPSLNISQAVLLMVWEC 168 GL + + I + P + SLN+S A ++ + Sbjct: 122 DTGLPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQA 169 >gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] Length = 154 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +PQ+ N G + R N + L L+ P EK + D V Sbjct: 4 IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+A TT +R + P + + +E + + F E Sbjct: 61 RNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAIRNGFAPENR- 119 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I P+ P SLN+S +V ++ +E Sbjct: 120 ------------IRIPMEPDCRSLNLSNSVAIISYEAWRQ 147 >gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228] gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20] gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228] gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20] Length = 155 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L+ P++ +N G + R +N +L +V P S+KA + + + ++ Sbjct: 4 IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRA--GLDYWEKLEPVIW 60 Query: 75 SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L + F +ATT N+ F + +N + FG E Sbjct: 61 ESLDIFLEHNLIYKDRFFFATTKSNKFYF---------------QAKFQENDFLFFGSES 105 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +GL E + L+ + I+ P+ SLN++ +V ++ +E + Sbjct: 106 YGLPMELMQLNWDNAITIPMKACGRSLNLATSVGIVSYEALRQ 148 >gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140] Length = 261 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167 Query: 73 VF--SNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ ++L+ +A ++AT R L E +FG E Sbjct: 168 IYLQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641] gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641] Length = 180 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N L ++ P ++ + D VR + Sbjct: 17 VVLYQPQIPQNTGNIARTCAATNAP-LHIIRPMAFPIDDRKMKRA--GLDYWDKLDVRFY 73 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + ATT +++ N IFGRE GL Sbjct: 74 DSLDEFME------ATTG----GKVHLVSKFADQTYSNVNYNDNLEHYFIFGREDKGLPE 123 Query: 135 EEIAL-SNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + + L + I P+N SLN+S V ++V+E + + + V + + Sbjct: 124 DFMRLHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQEFAGLELVHQYD 175 >gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 247 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 23/155 (14%) Query: 26 ENIGMVARAMWNFNLTQLR--LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N G +AR+ + + LVN + A SA A + SV SN+ A+ Sbjct: 108 HNFGAIARSCECAGVNAIVIPLVNSVSV--NADAIKISAGALMSL-SVCRESNIMNAVKF 164 Query: 84 LHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L +YA T E A L + I+ G E G++ + L Sbjct: 165 LKLCGYKVYAAT--------------EKATTLYTKTDYTYPTAIVIGSEDKGISPAVLYL 210 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ P SLN+S A ++++E + Sbjct: 211 CDKLVKIPTLGNITSLNVSAATAVLLYEVLRQRTT 245 >gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 156 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D ++V Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMQVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAESPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + + P+ P SLN+S V ++V+E + Sbjct: 107 GLSADVLERFANEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025] gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025] Length = 182 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L PQ+ N G +AR N T L ++ P +K + D + V + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + ++ +E ++ +FGRE GL Sbjct: 77 DSLNDFMNICS-----------GKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + S + P+N SLN+S V ++V+E + Sbjct: 126 EFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165 >gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis] Length = 201 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 18/154 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R+ L ++ +++ S+A AD +D V+VF++ +E + + Sbjct: 60 GNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWLD-VQVFNSTEECVLNAK 118 Query: 86 F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + AT L+P V +I + I G E+ G++ E +AL++ Sbjct: 119 RLGYQVVAT----------HLSPD---AVDISQIDWTRPTAFIMGNEKRGVSCEAVALAD 165 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 A P+ S N+S A L+++E + Sbjct: 166 ACAVVPMVGFVDSYNLSVAAALIMYEARRMREQA 199 >gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 158 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 20/169 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + +P++ N G R +L L+ P + + + V + N Sbjct: 4 FVFHEPKIPGNTGNAIRLAACTG-ARLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIHPN 62 Query: 77 LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A D ++A T+ NN+ +E+ G ++FG E GL Sbjct: 63 WEAAKEYFGDDRRVFAFTSHTENNY------------ADEQYQDGDI--LLFGTEPTGLP 108 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +E + + P+ P SLN++ + ++V+E S + Sbjct: 109 DEVLNDPYLTKHLRIPMLPGRRSLNLANSASIVVYEAWRQLGFPSAAPI 157 >gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341] gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341] Length = 158 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIDYLQ-------RERETFRLFACTTKTTQHHVDAQFQQGD--VLMFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 IA + I P+ P SLN+S AV ++ +E Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii] gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii] Length = 264 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 10/152 (6%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R F L + ++ D ++AR+ S A+ +D V V+ N E Sbjct: 83 GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLD-VEVWENTNE----CV 137 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R+R +V + ++E + +IFG E G + E +AL++ Sbjct: 138 QVL----RSRGYRIAVTDMGADTVPIHE-LDWTIPTAVIFGNEHNGTSEEALALADVKCH 192 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 P+ + S N+S A ++++ + + + + Sbjct: 193 IPMVGMVESFNVSVAAGILMYHIVGDRLERTG 224 >gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 267 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L++P N+G + R + + L++ A +S A + VR + Sbjct: 117 VALLEPADPGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGAIFALQVVR--AT 174 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E A R ++ + A + + Q + ++ G ER GL+ ++ Sbjct: 175 FAE----------FAAWKRAQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQ 224 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 AL + ++ P+ SLN++ A ++++E + S Sbjct: 225 QALCDQMVHLPMCGRSDSLNLAVATGVLLYELLSQS 260 >gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1] gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1] Length = 246 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 10/165 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ + + ++IL + N+G + R+ F + L R + A +SA A Sbjct: 90 VEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALAVILPKDRTAPLNAGAIKASAGAAER 149 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +D +RV +NL AI L + N + EA L + + ++ G Sbjct: 150 LDLIRV-TNLARAIEQLQ---------QRNVWVIGLAGEAGAPLIGTLDCKGPLALVMGN 199 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + + + P+ SLN+S A + ++E + Sbjct: 200 EGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244 >gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160] gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160] Length = 156 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P + + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDTKMRRA--GLDYHEYAEMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ IA D ++A T R F P + +FG E Sbjct: 61 ADWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDW---------------FVFGAET 105 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + P+ P SLN+S V ++V+E + Sbjct: 106 RGLPGAVLERFPDEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A] gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A] Length = 218 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 13/160 (8%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L++ N+ + R + L +VN +P+ S + + + + Sbjct: 22 VLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPT---FSKVSQGSEKWVFITTYIS 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +AI A R FK A + + + V I+ G E+WG++ E Sbjct: 79 IDDAIN---------ALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L + I+ P+ + SLN+S A ++++E + + Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQRQRLEAK 169 >gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 157 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 26/165 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 P ++LV+PQ+ +N G +AR T L LV P S++ + V + Sbjct: 6 PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRA--GLDYWPYVPLK 62 Query: 73 VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +++++ A ++ +AR + N+ S +N ++FG Sbjct: 63 YHTHIEDFQAFHQPLGGRWV-GFSARGKQNYVSFQF--------------QENDWLLFGS 107 Query: 128 ERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E GL E +AL A + P+ P SLN+S + + ++E Sbjct: 108 ETEGLPPEVLALCQATVYIPMCQPNVRSLNLSVSAAVGLFEARRQ 152 >gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 153 Score = 75.9 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 18/165 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 +L +P++ N G + R N LRL+ P +K + + + V + Sbjct: 5 VLFEPEIPNNTGAIIRLCANMG-ANLRLIKPYGFEMEDKKLRRA--GLDYKELMCVSEYD 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N + + + K++ + + ++ G E GL + Sbjct: 62 NFDDYLE------------KEKPKNLFVVSSKVKTIYTDVKYQAGDSLLLGPETRGLPQD 109 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I+ P+ SLN+S ++ +E K+ Sbjct: 110 ILNQ-YKGITLPMQDKSRSLNLSNCASIVAYEAWRQIGFKGAKSA 153 >gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 152 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L +P++ N G + R N + L L+ P ++K + + RV+ Sbjct: 5 VLFEPEIPNNTGSLIRLSANMGAS-LHLIKPFGFEITDKRLRRA--GLDYKELARVYEYE 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N ++ +A ++A +++ + P+ + +FG E GL Sbjct: 62 NFEDYLAKAKPERLFAVSSKVKQI---YTDPEYQSGD-----------SFLFGPETRGLP 107 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + I + P+ SLN+S V ++ +E Sbjct: 108 REILDQYQGI-TLPMQAESRSLNLSNCVSIVAYEAWRQ 144 >gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334] gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334] Length = 169 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 14/159 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N + L L+ P +K + VR+ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWQRVRIIYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + AT + + + + Q+ +FG+E GL Sbjct: 62 DSLDD-------FMATVKEPQYLYLITKFADQT-YSDRDYADIDQDHYFLFGKETTGLPE 113 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P+ +LN+S L+++E + Sbjct: 114 GFMRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQ 152 >gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter lwoffii SH145] Length = 249 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + ++ PRD + AR +A + ++V + L + Sbjct: 108 PHNLGACIRTAAAMGVE--AVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQ 165 Query: 80 AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D + + T +L E A+ + F+G V I+ G E GL + Sbjct: 166 IKEDFNVRVVGT----------MLD--EKALPIQNFDFTGTGVCIVMGAEDTGLRPITQS 213 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E Sbjct: 214 QCDQTVYIPMAGNLQSLNVSVATGMALYEACRQR 247 >gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1] gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1] Length = 153 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++LV PQ+ N G +AR T L L+ P S++ + V ++ Sbjct: 2 PAVVLVHPQIPPNTGNIARTCAAT-QTPLHLIEPLGFELSDRYLKRA--GLDYWPYVTLY 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 H + T + + ++A + AA + ++ ++FG E G+ Sbjct: 59 ---------CHPDWPTFLKTAHRHGRLIAFEPAAQQIYWDFTFAESDWLVFGSEPAGIPA 109 Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN+S +V + + E Sbjct: 110 DVLATCDVFLKIPMWQPAVRSLNLSVSVAIALMEVYRQ 147 >gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus 16] gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus 16] Length = 158 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 29/173 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L++ D TT + V A VL +FG Sbjct: 61 KDYQAFVEYLEKERGDYRIFACTT---KTTGHHVDANFHKGDVL------------LFGP 105 Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E GL E I I P+ P SLN+S AV ++ +E + Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158 >gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583] gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583] gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium 6_1_63FAA] Length = 166 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R T+L L+ P +EKA + V + Sbjct: 6 IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFQLNEKALKRA--GMDYWKDLDVTTY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--- 131 N ++ + +RN V A + ++ I+FG+E G Sbjct: 63 INYQDFL------------DRNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIPE 110 Query: 132 ---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L N+E A I P+ SLN+S +V ++++E + Sbjct: 111 EILLENQETA-----IRIPMIGDIRSLNLSNSVAIVLYEALRQ 148 >gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC 35937] gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC 35937] Length = 158 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N +L L+ P S+K + + +V Sbjct: 8 VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYATLQVH 64 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+A + ++A + R+ + + +FG E GL Sbjct: 65 ADLPTALAAIAPKRLFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P SLN+S V +MV+E + + Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158 >gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 190 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 23/173 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P + N G ++R N L L+ P +K + D+V + Sbjct: 25 IVLYEPLIPANTGNISRTCAATNAP-LHLIEPLGFSTDDKHLKRA--GLDYWDAVDI--T 79 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134 +++AD + + + A + Q +FG+E GL Sbjct: 80 YHKSLADFLTYLG--------ERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPE 131 Query: 135 ----EEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + I P+N SLN+S V L+++E + + Sbjct: 132 DFMRENVEKC---IRIPMNDEHVRSLNLSNTVALVLYEALRQQDFPKLEKAHH 181 >gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9] gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9] Length = 153 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 28/166 (16%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++L++PQ+ N G +AR T+L LV P +++ + V++ Sbjct: 2 PQVVLINPQIPPNTGNIARTCAATA-TELHLVGPLGFEITDRYLKRA--GLDYWPHVKLN 58 Query: 74 -FSNLKEAIADLH-----FIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + +H + + R N + P + ++FG Sbjct: 59 YHESYHTFLK-VHQQRGGRLLGFSVRGNINYIQHEFHPDDW---------------LLFG 102 Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E G+ + + ++ + P++ P SLN+S +V + ++E Sbjct: 103 SETTGIPKNILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQ 148 >gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas tunicata D2] Length = 229 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ + R+ + + V P G ++ SS++ + +++AIA Sbjct: 31 HNLSAIVRSADAVGIHHIHSVWPEGG---KRLTSSTSGGSKNWTENHIHHTVEDAIA--- 84 Query: 86 FIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T R+R +LA E A+ I + II G+E++G++++ +AL++ Sbjct: 85 -----TIRSRTPNVQILATHFSEQAVDFRA-IDYTRPTAIILGQEKFGISDQALALADQH 138 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ + SLN+S A ++++E + + Sbjct: 139 IIIPMVGMVQSLNVSVAAAIILYEAQKQRQDAG 171 >gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353] gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353] Length = 163 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R + L L+ P ++K + D VR + Sbjct: 4 IVLHEPEMPANTGNIGRTCVATG-SILHLIEPLGFKINDKMLKRA--GLDYWDKLDVRTY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ +A ATT + + I+FG+E G Sbjct: 61 VNFEDFLAKNPGAKIYMATTKSKQTYT---------------DVEYEDGCYIMFGKESAG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + EEI L + + P+ SLN+ +V ++++E + Sbjct: 106 IP-EEILLEHKETAVRIPMLEHIRSLNLGNSVAIVLYEALRQQ 147 >gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330] Length = 154 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 ++L P++ N G + R N L LV P G+P + ++ A D + V Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTGC-DLHLVKPL-GFPLDSSKMKRAGLDYHEFSQLTVH 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ A+ I+A T + P + A + +FG E G Sbjct: 61 ESWQDCWAALQG-KRIFALTTKGSTR------PDQVAFQAGD--------VFLFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + +A S I FP+ P S+N+S V + V+E + Sbjct: 106 LPTDILASLPSEQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQGYAGG 153 >gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 156 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 25/168 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVFS 75 +LV+PQ+ N G + R N T L L+ P EKA + D ++V+ Sbjct: 6 VLVNPQIPNNTGAIGRLCVNAGAT-LHLIKPIGFDIDEKAVRRA--GLDYWDKLDLKVWE 62 Query: 76 NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E + +ATT +R + G I FG E G Sbjct: 63 NIEEFFEHNDITCNAYFATTKTDR-------------PYFDADFKEGDY--IFFGSETKG 107 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + + + I+ P+ SLN++ + +++++ + + + E+ Sbjct: 108 IPEDILNKYKSQNITIPMTKEGRSLNLAISTGIVLYDAIRQNYSTFEE 155 >gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus acidilactici 7_4] gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus acidilactici 7_4] Length = 172 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 19/173 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P S+K + DSV+V Sbjct: 5 IVLFEPLMPANTGNIARTCA--GTNAVLHLIKPLGFEISDKTLKRA--GLDYWDSVKVVY 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWG 131 NL + +A T ++R V A + + +V +FG+E G Sbjct: 61 HDNLPDFLA--------TVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYFLFGKETTG 112 Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 L + ++ I P N +LN+S +V ++++E + + + E Sbjct: 113 LPETFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHE 165 >gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 181 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L PQ+ +N G +AR N T L ++ P ++ + D + V + Sbjct: 19 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDVIFY 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++++ + +++ + +E G + +FGRE GL Sbjct: 76 DSIEKFMEKCDGKV-----------HLISKFAEKVYSDENYNDGNHHYFLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 E+ +N + P+N SLN+S V ++V+E + Sbjct: 124 EDFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167 >gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 151 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 23/166 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +P++ N G R + +L LV P SE + + SV V NL+ Sbjct: 2 FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLE 60 Query: 79 EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A A L +YA TA A V I ++FG E GL+ E Sbjct: 61 AAWAALEPARVYAFTA--------------HATVSYADIAYQPGDVLLFGPEPTGLSEEV 106 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ ++ P+ P SLN+S A L+ +E S Sbjct: 107 L--ADPHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQHGFSGAA 150 >gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603] gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603] Length = 158 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + L R R F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFKQGD--VLMFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 IA + I P+ P SLN+S AV ++ +E Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1] gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1] Length = 157 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAG-----LDYHEFT-- 55 Query: 77 LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI AD A + + + A + + ++FG E GL Sbjct: 56 ---AIKFHADYQAFIAA-----ESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + I P+ S+N+S AV ++V+E Sbjct: 108 AEILAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147 >gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp. AL212] Length = 246 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 + + P ++L Q N+G R F + ++ P+D + S+ Sbjct: 87 DILDGLTEPARLLVLDGIQDPHNLGACLRVADAFGVH--AVIAPKDRAVGLTPTVYKVSS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + LK+ +I+ T E A Sbjct: 145 GAADTVPYISVTNLARTLKQLKEQGIWIFGTA--------------EDAAHDLTHFPISG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +V +FG E GL + ++ P+ SLN++ + + ++E Sbjct: 191 SVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETHRQQ 243 >gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii CS-505] gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii CS-505] Length = 153 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 28/166 (16%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P ++L++PQ+ N G +AR T+L LV P +++ + V++ Sbjct: 2 PQVVLINPQIPPNTGNIARTCAATA-TELHLVGPLGFEITDRYLKRA--GLDYWPHVKLN 58 Query: 74 -FSNLKEAIADLH-----FIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + +H + + R + + P + ++FG Sbjct: 59 YHESYHTFLK-VHQQRGGRLLGFSVRGNIDYIQYEFRPDDW---------------LLFG 102 Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E G+ + + ++ + P++ P SLN+S +V + ++E Sbjct: 103 SETTGIPENILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQ 148 >gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 168 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 S+L+ +A L + +++ + E G+ +FG+E GL Sbjct: 62 SDLEALLAFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 112 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151 >gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51] gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51] Length = 158 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + D RV + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 K+ +A + ++ R R +F+ K ++ + G ++FG E GL E Sbjct: 61 -KDYVAFIEYL----QRERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IA + I P+ P SLN+S AV ++ +E + Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158 >gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC 27755] gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC 27755] Length = 170 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 14/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N T+L L+ P EK + S+ V + Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLDEKNLKRA--GMDYWGSLDVTTY 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + AD RN + A + + + I+FG+E G+ E Sbjct: 61 ID--YADFL--------ERNPGAKIYMATTKAPKVYTEVSYEPDCYIMFGKESAGIPEEI 110 Query: 137 IALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ SLN+S +V ++++E + Sbjct: 111 LVQHQEDCVRIPMVGDIRSLNLSNSVSIVLYEALRQ 146 >gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia enterocolitica W22703] Length = 167 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 5/157 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + A +A N + A + + N ++FG E GL + Sbjct: 63 YQAFLDSENLDGAQSA--GTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 121 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 157 >gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2] Length = 154 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N L L+ P +K + V+ ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAS 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L I I+A T + + A + + G ++FG E GL + Sbjct: 63 LDAYIESEKPSRIFACTTKGK------------AFHSDAQYKKGD--ALLFGPETRGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I + P+ P S+N+S AV + V+E + Sbjct: 109 DVIDALPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQLGYDGAR 154 >gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 288 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + + + ++ PVI++ + N+G + R + + R + Sbjct: 121 LADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMK 180 Query: 60 SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A A + RV NL A+ +L ++Y T A+ + ++ Sbjct: 181 VAAGALEYLPVARVV-NLNRALEELKAAGFWLYGTAAKTGKSLHTINL------------ 227 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +G++ G E GL+ + ++S P+ PSLN S A + ++E + Sbjct: 228 --TGAIGLVVGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQRWQN 285 Query: 176 SE 177 S Sbjct: 286 SP 287 >gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL B-14911] Length = 159 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 7 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWQHVTILYY 63 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E A F Y T + K + E ++ IFG+E G Sbjct: 64 DSLDEFYEKNAGGEFFYLT----KFGQKPYTS--------FEYSDKEKDYYFIFGKETTG 111 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E E + + P+ SLN+S ++++E + Sbjct: 112 LPAEVKENNK-DRALRIPMTGNVRSLNLSNTAAILIYEALRQQ 153 >gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411] gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411] Length = 162 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L P + N G +AR N + L L+ P ++K + +++++ Sbjct: 17 IVLFQPDIPPNTGNIARLCVATN-STLHLIKPLGFSLNDKRLKRA--GLDYWENLKLEMH 73 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L + + F A+T + F+ + +IFG E G Sbjct: 74 DSLSDFLNKYGNRKFFLASTKAVKPYFEVYFE---------------EGDFLIFGSETQG 118 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L N+ I + I+ P+ SLN++ +V ++++E + Sbjct: 119 LPNDFIEANLDKAINIPMTDKVRSLNLADSVAVVLYEAIRQ 159 >gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 22/166 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VII+ + N+G V R+ F + L + +P+ + + SS + + +F Sbjct: 108 VIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVGC---LFGMDIFQ 164 Query: 76 NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+ D HF TT + + A + + F G ++FG E G Sbjct: 165 SENNALLDFLESNHFKIFTTRMSDD-----------ATDIFNQDF-GGRSALVFGTEHSG 212 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L++ I +N ++ P+ SLN+S AV + +E + + S Sbjct: 213 LSDFWIGKGTNTLV--PMTGSIDSLNLSNAVAVSGYEILRQKLQKS 256 >gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 164 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+LV+PQ+ +N G + R N T L L+ P +KA + + V+ Sbjct: 4 IVLVEPQIPQNTGTIGRLCVNLGAT-LHLIKPLGFDIDDKAVKRA--GLDYWKHLDLVVW 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + + K + N G I+FG E G+ + Sbjct: 61 ESFEAFLKEH---------PIDEHSYMSTTKTDNLYFNAPFKKGDY--ILFGSETKGI-D 108 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E++ L++ I+ P+ SLN+ +V +++++ + + EK Sbjct: 109 EKVLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQNYEGFEK 154 >gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12] gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12] Length = 148 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I L P++ N G + R N QL L++P +K + + V + Sbjct: 4 IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFALDDKRMRRA--GLDYHEWAMVQHY 60 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + I TT ++ V P++ ++FG E G Sbjct: 61 DDWDDFIIKNPKRRIFCCTTKTQQSYCDVVYQPEDI---------------LLFGPETRG 105 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L EI + I P+ SLN+S AV ++++E Sbjct: 106 LP-AEIRNQHESIRIPMVENSRSLNLSNAVAIILFEAWRQ 144 >gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia oklahomensis C6786] Length = 156 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + EA H TT + P + +FG E Sbjct: 62 DWDAFIAAEAPDPAHMFAFTTRGSGRFHDRAFEPGDW---------------FVFGAETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLAPELVERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium NOR5-3] gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium NOR5-3] Length = 154 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 17/158 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L +P++ N G + R N L L+ P +K + +V V + Sbjct: 4 VALYEPEIPPNTGNIMRLCANTGCA-LHLIKPLGFALDDKQLRRAGLDYREFANVSVHDS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133 L +A L + + N ++FG E GL Sbjct: 63 LDAMVAALD------------KPRIWTLSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSL 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E+ + + + P+ P SLN+S A L+++E + Sbjct: 111 IDELGV-HRCLRVPMRPDSRSLNLSNATALVLYEGLRQ 147 >gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297] Length = 252 Score = 75.5 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 17/151 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 NIG R L + + + A ++ A + V + L+E Sbjct: 114 PHNIGACLRTCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELK 173 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ++Y T EA+ + + G + ++ G E GL + + Sbjct: 174 QRGIWVYGTAG-------------EASSEIYQNRLQG-PIALVMGAEGKGLRRLTREVCD 219 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +I P+ SLN+S A + ++E + Sbjct: 220 ELIHIPMAGDVSSLNVSVAAGVCLFEVVRQR 250 >gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1] Length = 248 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q+ + VIIL N+G V+R+ + + N R SSA A + Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + + T +R + + E A L + + ++ G E Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G++ + + ++ P+ SLN++QA ++E + Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246 >gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147] Length = 154 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++L +P++ N G + R N +LRL+ P G+P + A+ A D S + Sbjct: 3 TVVLFEPEIPPNTGNIIRLCANTGC-ELRLIKPL-GFPLDSAKMKRAGLDYHEFSTLIVH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL E + L I+A T + +N SV F +V +FG E GL Sbjct: 61 ENLAECLDTLQGKRIFALTTKGKNRPDSV-------------AFQAGDV-FLFGPETRGL 106 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + N I FP+ P S+N+S V + V+E Sbjct: 107 PATVLDTLPENQKIRFPMMPNNRSMNLSNTVAITVFEAWRQ 147 >gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis MSMB43] Length = 156 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F +R F + +FG E G Sbjct: 62 DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGPETRG 107 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + + + P+ P SLN+S V ++V+E + Sbjct: 108 LASALVERFPAGQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150 >gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 218 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 20/185 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++LV PQ+ N G +AR + L L+ P + + V+V Sbjct: 39 VVLVSPQIPGNTGTIARTCAASAVG-LHLIEPLGFQVDDAKLKRA--GLDYWPYVVVKVH 95 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E R + K +LA + ++ + +IFG E GL Sbjct: 96 DSWAEFREYF--------RQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPP 147 Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E + I P+ + LN+S +V + ++E + + T + Sbjct: 148 EALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDS 207 Query: 188 TKGEL 192 +K L Sbjct: 208 SKSFL 212 >gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera] Length = 250 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 20/185 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++LV PQ+ N G +AR + L L+ P + + V+V Sbjct: 71 VVLVSPQIPGNTGTIARTCAASAVG-LHLIEPLGFQVDDAKLKRA--GLDYWPYVVVKVH 127 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E R + K +LA + ++ + +IFG E GL Sbjct: 128 DSWAEFREYF--------RQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPP 179 Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 E + I P+ + LN+S +V + ++E + + T + Sbjct: 180 EALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDS 239 Query: 188 TKGEL 192 +K L Sbjct: 240 SKSFL 244 >gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259] gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259] Length = 154 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N +L LV P S+K + + SV V ++ Sbjct: 4 IVLYQPEIPPNTGNLIRLAANTG-ARLHLVEPLGFDLSDKQLVRAGLDYHDMASVHVHAD 62 Query: 77 ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++EA+A + TT +R+ + ++FG E GL Sbjct: 63 WTAVQEALAGRRWFALTTRGSRSY---------------ASVAFEAGDVLLFGPESRGLP 107 Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN+S AV ++V+E Sbjct: 108 ADLLAHFDVDQRLRLPMLPGSRSLNLSNAVSVVVFEAWRQ 147 >gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema succinifaciens DSM 2489] Length = 258 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 26/171 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVID 69 VI+L N+G + R+ F + L +V D +E +SA A +D Sbjct: 106 NAVVIVLDSVTDPHNVGAILRSCDQFGAS-LMVVPDHRSADINNNEIIARASAGASSWVD 164 Query: 70 SVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +V NL A+ A +IY A K + PK II Sbjct: 165 VAKV-PNLVRAVQILKSAGF-WIYGADAGGTTLSK-IKFPK--------------KTCII 207 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E G+ + I+S P SLN+S A ++++E + + Sbjct: 208 MGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSVAAGVLLYEAYRQKLEN 258 >gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E980] gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E980] Length = 170 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P + N G +AR N T L L+ P +K + + ++ Sbjct: 7 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 S+L+ +A L + +++ + E G+ +FG+E GL Sbjct: 64 SDLEAFLAFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 113 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 114 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 153 >gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMD-9] gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus LMD-9] Length = 169 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G +AR N + L ++ P +K + D + + + Sbjct: 6 IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ +N ++ E G++ +FGRE GL Sbjct: 63 DNLADFMS----------KNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLP- 111 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S V ++V+E + Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152 >gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. Ch1-1] gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. Ch1-1] Length = 156 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + AR A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAG-LDYHEYAQMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ IA D ++A T R F ER F + +FG E Sbjct: 61 ADWPAFIAKESPDPARMFAFTTRGSGRFH-------------ERAFQSGDW-FVFGAETR 106 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + S + P+ P SLN+S V ++V+E + Sbjct: 107 GLPDLVLDQFASEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150 >gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2 [Succinatimonas hippei YIT 12066] gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2 [Succinatimonas hippei YIT 12066] Length = 156 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L PQ+ +N G + R N +L V P D + +K + I ++ V ++ Sbjct: 4 IVLYRPQMPQNAGNIIRLSANCG-AKLHFVGPLDFFMDDKKMLRAGLDYHEIANLTVHTS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + +++ + A+T P + + + ++FGRE GL + Sbjct: 63 FEKFMENMNPKRLIAST------IHGTATPSDFSFEDED--------FLLFGRETSGLPD 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ LN+S AV +M +E Sbjct: 109 EVMQIIPEKFRLRIPMVEKSRCLNLSNAVAVMAYEAWRQ 147 >gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103] gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103] gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355] Length = 157 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAG-----LDYHEFT-- 55 Query: 77 LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI AD AT + + A + + ++FG E GL Sbjct: 56 ---AIKFHADYQAFIAT-----EQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I P+ S+N+S AV ++V+E Sbjct: 108 AEILQALPAAQKIRIPMMAESRSMNLSNAVSVVVYEAWRQ 147 >gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 150 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G + R+ LT L L+ P EK S + ++++ Sbjct: 3 IVLFQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRSGLDYWHLVDLKIW 59 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + EA ++ YATT + + +N I+FG E G Sbjct: 60 ESFEDFLEANRNIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPESRG 104 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + I+ P+ P+ SLN+S + +++++E Sbjct: 105 IPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145 >gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM 2243] Length = 248 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q+ + VIIL N+G V+R+ + + N R SSA A + Sbjct: 95 QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + + T +R + + E A L + + ++ G E Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G++ + + ++ P+ SLN++QA ++E + Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246 >gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316] gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae H36B] gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 515] gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316] gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 515] gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae H36B] gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 182 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N L ++ P +K + D + V + Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + +++ + +E Q+ +FGRE GL Sbjct: 77 DSLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165 >gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum CFBP2957] gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CFBP2957] Length = 175 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 N L++A D ++A T R F + P + +FG E Sbjct: 81 NWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 125 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E E + I P+ P SLN+S V ++V+E Sbjct: 126 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168 >gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13] Length = 163 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 G ++L P++ N G +AR N T L L+ P +K + + +V Sbjct: 2 GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNV 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L E F + + ++ +FGRE G Sbjct: 59 VYYDSLDELFE---------KNKEAEFFYITKFGMKPHTSFDYSKLDKDYFFVFGRETTG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + I + + P+ SLN+S ++++E + Sbjct: 110 LPKDLIQSNLDQCLRLPMTKNVRSLNLSNTAAILIYEALRQQ 151 >gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 156 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F + P + +FG E Sbjct: 62 SWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149 >gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral taxon 014 str. F0314] gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral taxon 014 str. F0314] Length = 154 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 I+L P++ N G + R N L LV P + + + V Sbjct: 3 TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59 Query: 74 FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ + + I+A T + + + + +FG E G Sbjct: 60 HENFEDCLKALEGRRIFALTTKGKTRP--------------DEASFKKGDVFLFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + + P+ P S+N+S +M++E Sbjct: 106 LPAEILDSLPAERKLRLPMRPGSRSMNLSNTAAVMLFEAWRQ 147 >gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna Methyltransferase From Streptococcus Mutans Ua159 Length = 182 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L PQ+ N G +AR N T L ++ P +K + D + V + Sbjct: 20 VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + ++ +E ++ +FGRE GL Sbjct: 77 DSLNDFMNICS-----------GKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + S + PVN SLN+S V ++V+E + Sbjct: 126 EFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQ 165 >gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32] gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32] Length = 158 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+LV+P++ N G +AR T L LV +K + V + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TILHLVGKLGFSTDDKTLKRA--GLDYWSEVEIHYW 65 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK A + FIY + K E + I+FG+E G Sbjct: 66 PDLDTLKAAYPNGRFIY-------TSKKVAKTYVELEFRCGD--------FIVFGKETKG 110 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E++ +N + P+ SLN+S + ++++E + + Sbjct: 111 LP-EDLIEANPATSVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152 >gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155] gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS155] Length = 154 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + TT +R + + ++ ++FG E GL Sbjct: 63 FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN] Length = 186 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 12/177 (6%) Query: 6 PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + S K P+I++ V N+G V R+ F + + L P+ + ++ Sbjct: 15 EEFKQSRKMPLIVVLDDVRSLH--NVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A+ +D + F +EAI L ++Y + + + + S Sbjct: 73 GAEDSVDW-QYFPTTEEAIEQLKANGYYVY--SVEQVEGSTKLQTLSQQVAPITSEQTSE 129 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + LS+ + P SLN+S +++WE ++ Sbjct: 130 KRYAVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWEFAHALLLE 186 >gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC 29799] Length = 252 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 16/171 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P G ++L Q N+G + R F L LVN S K ++ Sbjct: 96 NPGLTPPDKLTGGRYLVLDGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRAT 155 Query: 62 ANADCVIDSVRV-FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + ++ + +YAT R R + Sbjct: 156 MGACFRLPAWETDLETVRALLDGADIPLYATALREDTVDV--------------RDVDLK 201 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+++E +AL I P+ SLN + A +++WE Sbjct: 202 RAAVVIGSEGRGISDEALALCRRTIKIPMRARCESLNAAMAAGVVLWEMCR 252 >gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07] Length = 175 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 23 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80 Query: 76 N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + L++A D ++A T R F + P + +FG E Sbjct: 81 SWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 125 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 126 GLSEERRAWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168 >gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1] gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein [Stigmatella aurantiaca DW4/3-1] gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1] gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein [Stigmatella aurantiaca DW4/3-1] Length = 167 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 18/167 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ A+ ++LV PQ+ N G VAR ++L L+ P +++ + Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTG-SRLILIEPLGFSIADRDLKRA--GLDY 58 Query: 68 IDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 D V +++ + D AR + + + + + R +G + ++F Sbjct: 59 WDKVFLKLYPTYPAYLEDFP-----AAR-----RWLFSARAPTSLYAARFEAGDH--LVF 106 Query: 126 GRERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL E +A S ++ P+ SLN+S +V + +E + Sbjct: 107 GSEVTGLPAEVMAGGSGQSVTIPMLEERRSLNLSTSVGIATYEALRQ 153 >gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385] gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385] Length = 158 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R +F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IA I P+ P SLN+S AV ++ +E + Sbjct: 114 LIASLPVEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158 >gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 156 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N L L+ P G+P + AR A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F + A + + +FG E G Sbjct: 62 DWDAFVAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW--------FVFGSETRG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E + + P+ P SLN+S V ++V+E + Sbjct: 108 LPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150 >gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parasanguinis F0405] gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus parasanguinis F0405] Length = 180 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 19/177 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M Q SA I+L PQ+ +N G +AR N + L ++ P ++ Sbjct: 1 MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59 Query: 61 SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + D VR + +L+E + A + + +++ + G Sbjct: 60 A--GLDYWDKLDVRFYDSLEEFME------AAS----DGQVHLVSKFANQTYSDVSYQDG 107 Query: 119 QNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 ++ +FGRE GL E+ + I P+N SLN+S V ++V+E + Sbjct: 108 KSHYFLFGREDKGLP-EDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136] Length = 158 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G V R +L L+ P +K + V RV+ Sbjct: 4 IVLYQPEIPHNTGAVGRLCLATG-ARLHLIKPLGFSIDDKQLKRA--GLDYWKDVDVRVW 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ A+ A L K N + ++FG E GL Sbjct: 61 DRFEDLQAE--------AAPSGAPFYYLTTKTTQTYWNATFPA--ECYLVFGPETRGLPE 110 Query: 135 EEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +A + + P+ SLN++ AV ++++E + + Sbjct: 111 SLLAEQPASCLRIPMLDT-RSLNLATAVGIVLYEAVRQTGSVPNPQA 156 >gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999] Length = 154 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L L+ P +K + +V+ +N Sbjct: 4 IVLYEPEIPPNTGNIIRLCANSGFA-LHLIEPLGFEWDDKKVRRAGLDYHEFANVQRHAN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +A +A+ + F K + G +IFG E GL ++ Sbjct: 63 LDAYLA--------SAKPQRIF--ACTTKGSMFHSKASYAPGD--CLIFGPETRGLPHDF 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + P+ S+N+S +V + ++E Sbjct: 111 ILSLPPEQRVRIPMLSDSRSMNLSNSVAVFIYEAWRQ 147 >gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1] Length = 165 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 24/171 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R +L L+ P +EK + D V + Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTTY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N ++ +A ATT + R + V + I+FG+E G Sbjct: 61 VNFEDFLAKNPGAKIYMATT-KARKKYTDVKFEDD--------------AYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + E + + I P+ P SLN+ +V ++++E + + + Sbjct: 106 IPEEILVDYKDTSIRIPMFPDIRSLNLGNSVAIVLYEALRQNDFPGLEEAG 156 >gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195] gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS195] gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS678] Length = 154 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + TT +R P + + ++FG E GL Sbjct: 63 FDAFLEAMAGKRIMACTTKGSR--------PHTELTFAKDDV-------LLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246] Length = 172 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 20/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72 + L +P++ N G +AR N T+L L+ ++A + +A V+ V Sbjct: 4 VALWEPEIPPNTGNIARLCAATN-TRLHLIGKLGFRLDDRALKRAGLDYWHAVDVVRHVT 62 Query: 73 VFSNLKEAIAD---LHFIYATTARNRNNFKS------VLAPKEAAIVLNERIFSGQNVGI 123 F++ + A+ TT V P E E + Sbjct: 63 -FADFERALTGEVKRDSPSGTTTDADRIEHPLPRVWCVETPAERPYTRAEFADGD---CL 118 Query: 124 IFGRERWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 +FG E GL ++ ++ P+ SLN++ AV +++++ + Sbjct: 119 LFGSESSGLPPSVRERYADRLVGIPMPGGAVRSLNLATAVGIVLYDALRR 168 >gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 171 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ N G +AR + T L L+ P +K + ++V + Sbjct: 5 IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFKTDDKHLKRA--GLDYWNAVDITYH 61 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +NL E + D T V + + Q++ ++FG+E G Sbjct: 62 ANLDAFMEYLGDNQLYLVT-----KFANHVYSDIDYGNN-----DQDQDIFLMFGKETTG 111 Query: 132 LTNEEIALSN--AIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 L E ++ I P++ SLN+S L+++E Sbjct: 112 LP-EAFMRAHEDQCIRIPMDDTHVRSLNLSNCAALVIYEVQRQQ 154 >gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 7822] gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC 7822] Length = 155 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV PQ+ N G +AR T+L LV P S++ + + S+ Sbjct: 2 VRVVLVHPQIPPNTGNIARTCAATA-TELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL++ + +H + R SV + + ++FG E GL Sbjct: 61 PNLEDFLT-IHQKFG----GRLIGFSVSGHQSYLEYSFKSDDW-----LLFGSETQGLPA 110 Query: 135 EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 + +A + P + P SLN+S +V + ++E Sbjct: 111 NLLTSCDATVYIPMMEPKVRSLNLSVSVAVGLFEAKRQ 148 >gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD1] gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans ATCC 17616] gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia multivorans CGD1] Length = 156 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D I+A T R + F P + +FG E Sbjct: 62 DWDAFVAAESPDPARIFAFTTRGSSRFHDRAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + + P+ P S+N+S V ++V+E + Sbjct: 107 GLPAELLERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150 >gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0860] gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0635] gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0860] gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0635] gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX1342] gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis TX0630] Length = 168 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ N G +AR N L L+ P +K + + ++ Sbjct: 5 IVLFEPQIPANTGNIARTCAATNAP-LHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 +L +A + ++ G++ +FG+E GL Sbjct: 62 KDLAAFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE I P+N SLN+S L+V+E + Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151 >gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4] gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4] Length = 154 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ +P++ N G R + +L LV P SE + + +V V Sbjct: 3 RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHE 61 Query: 76 NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL A + ++A TA A I ++FG E GL+ Sbjct: 62 NLAAAWEAVTPARVFAFTA--------------HATTSYADIAYQPGDVLLFGPEPTGLS 107 Query: 134 NEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 E + ++ I+ P+ P SLN+S A L+ +E Sbjct: 108 EEVL--ADEHITERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 147 >gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC 35896] Length = 156 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L++P++ N G + R ++L L+ P EK + +D V + Sbjct: 5 IVLIEPEIPSNTGNIIRTCACTG-SRLHLIRPLGFSMEEKKLRRA--GLDYLDLVEICYY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F L+E + F +T NRN+ V E ++FG+E G Sbjct: 62 DSFEELEEKYPNAEFFMYSTKSNRNHT-DVRYEDEC--------------FLVFGKETKG 106 Query: 132 LTNEEIAL-SNAIISFPV-NPL-FPSLNISQAVLLMVWECMEN 171 +++ + ++ ++ P+ N LN+S +V + ++E + Sbjct: 107 ISDSILDRYADCMVRIPMLNEERMRCLNLSNSVAIGIYEVIRQ 149 >gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 378 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 19/177 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q +++L Q N+G +AR++ F + + + R + +A A + Sbjct: 194 QAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTL 253 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV NL A+ L ++Y TT+R + S + + ++ Sbjct: 254 PVARVV-NLNRALEYLKEQGFWVYGTTSRGADPIYSADFQR--------------PIALV 298 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 G E G++ + ++S P+ SLN S A + ++E K + Sbjct: 299 VGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPE 355 >gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana] gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana] gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana] gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana] Length = 263 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 ++LV PQ+ N G +AR + L LV P G+ + AR A D V+ + Sbjct: 84 VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVKAHS 141 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +E R + K ++A + ++ ++FG E GL Sbjct: 142 SWAEFQEYF-----------RLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGL 190 Query: 133 TNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMEN 171 E ++ N + P+ + LN+S +V + ++E Sbjct: 191 PPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 236 >gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis MPA1U2] gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis MPA1U2] Length = 157 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L P + N G +AR+ + +L L+ P +K + + V + + Sbjct: 5 IVLYQPLIPANTGNIARSCAGTGV-KLHLIRPLGFSTDDKMLKRA--GLDYWEHVDIHYY 61 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+E + F Y T + + + +E ++ +FG+E G Sbjct: 62 DGLQELFDRYKNGAFYYITKFGAKTHTSYDYSDRE------------KDHFFVFGQETKG 109 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E I + + + P+N SLN+S ++++E + Sbjct: 110 LPKELIEQNPDFCLRIPMNDNIRSLNLSNTASILMYEALRQQ 151 >gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 167 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + ++ + +++ + + SG++ +FGRE GL Sbjct: 62 DNLADFLSQM-----------KGQVYLISKFAEKVYSEANLASGEDQYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. HL-EbGR7] gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. HL-EbGR7] Length = 157 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P++ N G + R N +L L++P E + D +V Sbjct: 4 VVLYQPEIAPNTGNIMRLCANTGC-RLHLIHPLGFSLDESKLKRA--GLDYRDMAQV--- 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ + A T+ L + + G +FG E GL E Sbjct: 58 -----AEYDSLAAFTSAVAPERMFALTTRASLPHSAPAFRPGDT--FLFGPETRGLPMEI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ P SLN+S A +MV+E Sbjct: 111 LDGLPEDRRLRIPMVPGSRSLNLSNAAAVMVYEAWRQ 147 >gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 169 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E A F Y T + V + + ++ +FG+E Sbjct: 61 YDSLDEFFEKNAGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108 Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL +E + + + P+ SLN+S ++ +E + Sbjct: 109 GLPDELLQENEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151 >gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101] gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens SM101] Length = 153 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ +N G +AR N ++L ++ P +K + + Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ + + K + A + + + I+FGRE G+ Sbjct: 60 IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEEAFIMFGRESAGV 107 Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E++ ++ I P+ N SLN+S V ++ +E + Sbjct: 108 P-EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146 >gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6] Length = 163 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 24/175 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +P++ N G + R + L L+ P +EK + D V + Sbjct: 6 IVLHEPEIPANTGNIGRTCVAAGAS-LHLIEPLGFRLNEKMIRRA--GMDYWDQLDVTRY 62 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ ++ YA+T +RN I+FG+E G Sbjct: 63 VDYEDFMSQHPGAKIYYASTKASRNYTDVSFEDDCY---------------IMFGKESAG 107 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + E + ++A I P++P SLN+ +V ++++E + + + + Sbjct: 108 IPEEILRENDATAIRIPMSPDIRSLNLGNSVAIVLYEALRQHGFAGLQTEGSLSP 162 >gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. RS9916] gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. RS9916] Length = 158 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 24/163 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV- 71 I L +P++ N G +AR+ F L L L+ P ++A + V Sbjct: 6 SPLRIALFEPRIPPNTGNIARSCAAFQLP-LSLIEPLGFSIDDRAVKRA--GLDYWPHVD 62 Query: 72 -RVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + +A+L H + + + L+ F +V ++FGR Sbjct: 63 LATHPDFEHFLAELPVPHRLIGCS-------------RHQGQSLSTFQFQPGDV-LLFGR 108 Query: 128 ERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWEC 168 E GL N +AI + P+ + SLN+S + L+ ++ Sbjct: 109 EDTGLPNPVRERCDAICTIPMRGHENVRSLNLSVSCALVSFQA 151 >gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185] gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS185] Length = 154 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + TT +R P + + ++FG E GL Sbjct: 63 FDAFLEAMAGKRIMACTTKGSR--------PHTELTFAKDDV-------LLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MSIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638] gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638] Length = 157 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134 + + A N + + A + + + ++FG E GL T Sbjct: 54 FTAVVRHHDYAAFVAA---ENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATI 110 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + I P+ P S+N+S AV ++V+E Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 154 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+ +P++ N G +AR L T+L L+ P + + + + + Sbjct: 4 IVFYEPEIPFNTGAIARTC---GLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYY 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + D +F A+T + + I+FG E G Sbjct: 61 DSYDELVEKYPDSNFYLASTKAKKKYT---------------DVEYKDGDFIVFGPETRG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFP-SLNISQAVLLMVWECMEN 171 L E++ +N I P+ F SLN+S + ++++E + Sbjct: 106 LP-EDLIFANYDNAIRIPMLKDFGRSLNLSNSANIILFEALRQ 147 >gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400] gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400] Length = 156 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + AR A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAG-LDYHEYAQMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ IA D ++A T R F ER F + +FG E Sbjct: 61 ADWAAFIAKESPDPARMFAFTTRGSGRFH-------------ERAFQSGDW-FVFGAETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPDPVLGQFADEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150 >gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 155 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ +P++ N G R + +L LV P SE + + SV V Sbjct: 3 RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHE 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL+ A A + ++A TA A V I ++FG E GL+ Sbjct: 62 NLEAAWAAVGPARVFAFTA--------------HATVSYADIAYRPGDVLLFGPEPTGLS 107 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E +A + + P+ P SLN+S A L+ +E S Sbjct: 108 AEVLADPHVTERVRIPMLPGRRSLNLSNAAALVTYEAWRQHGFSGAA 154 >gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM 16795] gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM 16795] Length = 156 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 28/167 (16%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++LV+P++ +N G + R N L L+ P +K D + Sbjct: 2 SINVVLVEPEIPQNTGNIIRTCANTG-AILHLIRPLGFSLEDKYLKR--CGLDYWDISEI 58 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F L+E D + Y+TT N+ + ++ F ++FG+E Sbjct: 59 RYYDSFEELQEKYPDAKYFYSTTKANKAH--------------SDMEFEDG-CFLVFGKE 103 Query: 129 RWGLTNEEIALSNA--IISFPV--NPLFPSLNISQAVLLMVWECMEN 171 GL + + +N + P+ SLN+S +V ++V+E M Sbjct: 104 TKGLP-KPLIEANMETCMRIPMLKLEKARSLNLSNSVAIVVYEAMRQ 149 >gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp. MP688] Length = 164 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N T+L LV P +K + +++V N Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72 Query: 77 LKE---AIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + A+A TT R++ I + +FG E GL Sbjct: 73 WEACCTALAGRRMFALTTKGSTRHST----------------IAFQEGDVFVFGPETRGL 116 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P SLN+S + ++++E Sbjct: 117 PEEIRDQFAPDHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQ 157 >gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens E str. JGS1987] gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens B str. ATCC 3626] gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens CPE str. F4969] gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens NCTC 8239] gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens C str. JGS1495] gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens ATCC 13124] gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens C str. JGS1495] gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens E str. JGS1987] gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens B str. ATCC 3626] gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens CPE str. F4969] gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens NCTC 8239] Length = 153 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ +N G +AR N ++L ++ P +K + + Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ + + K + A + + + I+FGRE G+ Sbjct: 60 IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107 Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E++ ++ I P+ N SLN+S V ++ +E + Sbjct: 108 P-EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146 >gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 164 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T + P N K +I+ N+G + R F + ++ S + R ++ Sbjct: 6 THHTPASHN--KEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTA 63 Query: 62 ANADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFS 117 N + + +S + + L ++ R + L ++ + E I + Sbjct: 64 RNTERTVRFRESENISTTL------INL------REQGFSTIALEIDSTSLPIAEVHIAN 111 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ G E G+T E + I P++ + S+N++QA + ++E Sbjct: 112 MSKISLVIGAESTGVTPEALEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164 >gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii] gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii] Length = 264 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 10/152 (6%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R F L + ++ D ++AR+ S A+ +D V V+ N E Sbjct: 83 GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLD-VEVWENTNE----CV 137 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R R +V + ++E + +IFG E G + E +AL++ Sbjct: 138 QVL----RKRGYRIAVTDMGADTVPIHE-LDWTIPTAVIFGNEHNGTSEEALALADVKCH 192 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 P+ + S N+S A ++++ + + + + Sbjct: 193 IPMVGMVDSFNVSVAAGILMYHVVGDRLERTG 224 >gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 178 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + NIG V R F + + L P + ++ A+ ++ R Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYSVEW-RY 82 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130 N +A+ +LH + +VLA ++ L +++ + + I+ G E Sbjct: 83 KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + + P SLN+S +++WE Sbjct: 133 GVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWE 169 >gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 178 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + NIG V R F + + L P + ++ A+ ++ R Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130 N +A+ +LH + +VLA ++ L +++ + + I+ G E Sbjct: 83 KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + + P SLN+S +++WE Sbjct: 133 GVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWE 169 >gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC 43184] Length = 249 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 34/185 (18%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKA 57 P + K P I+L V N G +AR + +V P G + A Sbjct: 87 PFVYEQGKNPFIVLLDGVTDVR-----NFGAIARTCECAGVD--AIVIPSRGSVTVNADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113 +SA A V+ + ++ EAI L +YA + E A Sbjct: 140 IKTSAGALHVLSVCK-EKSITEAIRFLQASGVKVYAAS--------------EKAFENYT 184 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I V I+ G E G++ + + + ++++ P SLN+S A ++++E + + Sbjct: 185 AIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYEVVRQRM 244 Query: 174 VSSEK 178 + Sbjct: 245 NEQAQ 249 >gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 155 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G +AR N + L +V SEKA + + + Sbjct: 3 IALFRPEIPPNTGNIARLCVNAGVP-LSIVGEPAFDLSEKAVRRA--GLDYWKDLELHR- 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D + K + + + + +FGRE GL EE Sbjct: 59 ----YPDWDW---FQKEKETQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLP-EE 110 Query: 137 IAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I S+ IIS P+ S+N+S AV ++++E + Sbjct: 111 IHKGHPSDQIISIPMAESSRSINLSNAVAIILYEALRQ 148 >gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 154 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 ++L P++ N G + R N L LV P G+P + A+ A + R V Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFARVSV 59 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E +A L I+A T + R P + + + +FG E G Sbjct: 60 HESYAECLAALAGRRIFALTTKGRTR------PDQVSFQAGD--------VFLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + I P+ S+N+S V ++V+E Sbjct: 106 LPAEILDGLPQERKIRLPMKSGSRSMNLSNTVAVIVFEAWRQ 147 >gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As] gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12] Length = 262 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P+ G +IL Q N+G + R + L+ G S K S Sbjct: 98 MLIARPKSSKPRPGSALILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRS 157 Query: 61 SANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + A VI VF + ++ + + + A A + + Sbjct: 158 AMGAHFVIP---VFEDPPWEQVLN-------------IVPRPIYATHMQADTVLYELDLK 201 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + V IFG E G+++ +A +A++ P SLN++ + + ++E + S S Sbjct: 202 EPVTWIFGNEGQGISDALVAKCSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259 >gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142] Length = 262 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + + K +SA A V +F + Sbjct: 120 QDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWF---QVPIFVT-----S 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL + +++N+ +++A A ++ Q I+ G E GL+N IAL++ Sbjct: 172 DLTTVI---KKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALADE 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++S P++ SLN++ A L+++E I +S Sbjct: 229 LVSIPLSQGVESLNVAIATALLLYEAKRQKIFNS 262 >gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223] gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS183] gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica BA175] gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS223] gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica OS183] gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica BA175] Length = 154 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + TT +R + + ++ ++FG E GL Sbjct: 63 FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519] gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii] Length = 151 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 30/163 (18%) Query: 19 LVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 LV+P++ +N G + R N +L L+ P EK + +D V + + Sbjct: 2 LVEPEIPQNTGNIIRTCACIN---ARLHLIKPMGFSMDEKQLKRA--GLDYMDLVSINYY 56 Query: 75 SNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E I D F + TT +N+ E + ++ I+FG+E G Sbjct: 57 DSFEELIEDKDINKFYFFTTKAKKNHT--------------EATYEDESY-IVFGKETKG 101 Query: 132 LTNEEIALS-NAIISFPVN--PLFPSLNISQAVLLMVWECMEN 171 L+ E ++L+ N + P+ SLN+S +V + +E + Sbjct: 102 LSQEILSLNPNNNVRIPMLNMDRVRSLNLSNSVAIAAYEAIRQ 144 >gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium modesticaldum Ice1] gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium modesticaldum Ice1] Length = 153 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 14/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G VAR +L L+ P +K + + V V N Sbjct: 4 IVLVEPEIPPNTGNVARLCAGTGC-ELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVHDN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + ++ ++L +FG+E GL+ E Sbjct: 63 WAAFLE------------KHGQANLLLLSTKGKKAYHEFAYRPGDFFVFGKETKGLSEEI 110 Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ SLN+S AV ++V+E + Sbjct: 111 LSEWPERVARIPLVADARSLNLSNAVAVVVFEGLRQ 146 >gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii DSM 18315] Length = 249 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 34/185 (18%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKA 57 P + K P I+L V N G +AR + +V P G + A Sbjct: 87 PFVYEQGKNPFIVLLDGVTDVR-----NFGAIARTCECAGVD--AIVIPSRGSVTVNADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113 +SA A V+ + ++ EAI L +YA + E A Sbjct: 140 IKTSAGALHVLPVCK-EKSITEAIRFLQASGVKVYAAS--------------EKAFENYT 184 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I V I+ G E G++ + + + ++++ P SLN+S A ++V+E + + Sbjct: 185 AIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYEVVRQRM 244 Query: 174 VSSEK 178 + Sbjct: 245 NEQAQ 249 >gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] Length = 167 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 +L++ I+ + + A + + + ++ +FGRE GL Sbjct: 62 ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 108 Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++V+E + Sbjct: 109 PEDFMREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269] Length = 176 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 11/171 (6%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L D + N+G V R+ F + + L PS + ++ Sbjct: 15 EEFKEAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGG 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123 + ++ + FS ++AI L R F + E ++ L R+ + + Sbjct: 75 ENSVEW-KYFSQTEKAIRQL--------RLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G+ I ++ + P SLN+S ++VWE + ++ Sbjct: 126 VFGNEVKGVKQTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQLLL 176 >gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 162 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P++ +N G +AR ++L L+ P +EK + + + Sbjct: 14 IVLYEPEIPQNTGNIARTCVLTG-SKLHLIKPLGFEINEKQVRRA--GLDYWKDLDLEIH 70 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + +E + + K++ + I + I+FGRE G+ Sbjct: 71 DSYEEFLK------------KYGEKTIYLSTTHGETHFDEISFKEGDFIMFGRESSGVP- 117 Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 EE+ + P+ SLN+S V ++ +E + Sbjct: 118 EEVHNRHIGFRVPMIKSSTRSLNLSNTVAIVAYEALRQ 155 >gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355] Length = 167 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 18/170 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + R K + E + + +FGRE GL Sbjct: 62 DSLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAESSHYFMFGREDKGLPE 110 Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + + P+N SLN+S AV ++V+E + + V E Sbjct: 111 EFMRRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQNFAGLDLVHE 160 >gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 247 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 12/167 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +LQ +++L + N+G + R+ + L + +P + +S Sbjct: 90 EKLQLKESPLIVVLESVEKPGNLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASIGGV 149 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + V S+ +E IA L + + +L + Q I+ Sbjct: 150 FCVPTA-VCSS-QECIAFL----------KEHGIKILTAQLQDSYEYYDYDMTQGTAIVM 197 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GLTN+ ++A I P+ SLN+S + ++++E + Sbjct: 198 GTESTGLTNQWREAADAHIRIPMLGRLDSLNVSVSAAILMYEAVRQR 244 >gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia oklahomensis EO147] Length = 156 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + IA D ++A T R F +R F + +FG E G Sbjct: 62 DWDAFIAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E + + P+ P SLN+S V ++V+E + Sbjct: 108 LAPELVERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1] Length = 166 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 30/169 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P++ N G + R +L +L L++P SEK+ + VR Sbjct: 17 VVLVHPEIPGNTGTIGRTCVALDL-ELILIHPLGFDISEKSVRRA--GLDYWKHVR---- 69 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGR 127 +++ + F AP+E + L E G +V +IFG+ Sbjct: 70 ----LSEYD--------SWTAFLEARAPREDQVFLFENGGEGGSVYEPDYPSDAYLIFGK 117 Query: 128 ERWGLTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174 E GL +E + ++ P+ +P SLN+S A ++++ M + +V Sbjct: 118 ETKGLPSEVLNGRAHRTFHLPMRSPHIRSLNLSNAATAVIYQAMRSFLV 166 >gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia cenocepacia HI2424] Length = 172 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 24/179 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P P Q + ++LV P++ N G V R N L L+ P G+P + AR Sbjct: 5 VAPLRPP-QPNRNMFNVVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMR 61 Query: 61 SANADCVI-DSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A D +RV + +A D ++A T R F + A + + Sbjct: 62 RAGLDYHEYAQMRVHRDWDAFVAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW- 114 Query: 116 FSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GL E + + P+ P SLN+S V ++V+E + Sbjct: 115 -------FVFGSETRGLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 166 >gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 252 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 20/180 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++LV P + N G +AR + L LV P + + V++ Sbjct: 73 VVLVSPMIPGNTGSIARTCAASAVG-LHLVGPLGFHVDDTKLKRA--GLDYWPYVVVKIH 129 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E D ++ K +LA + ++ ++FG E GL Sbjct: 130 DSWGE-FRDYFM-------KQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFGSETKGLPE 181 Query: 135 EEIALSN------AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 + + I P+ + LN+S +V + ++E + + A Sbjct: 182 SALEDCSGEAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQLQYQPDLPEEA 241 >gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 169 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + ++ E H F + + + ++ IFG+E GL Sbjct: 61 YDSMDEFFEKNH---------GGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLP 111 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E+ +N + P+ SLN+S ++ +E + Sbjct: 112 -DELLQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151 >gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str. Bath] Length = 282 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G +AR + F L L L + P S+ A + +D VR + +A+ Sbjct: 141 PHNLGAIARTLAFFGLGHLVLSDHPAQAGLSDAAYRVAEGGLEFLD-VRRLTGAAQALRS 199 Query: 84 LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L + T R + P++ +L ++ G E GL +A Sbjct: 200 LRPHFHVVGTALHARGIPPEAV-PRDRRPIL-----------LVLGNEENGLPPPTLAAC 247 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +++ P SLN+S ++ + + Sbjct: 248 ETVVTIPGGGQIQSLNVSATAAILTYSLLLRQAE 281 >gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 150 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 34/166 (20%) Query: 17 IILVDPQLGENIGMVARAM----WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 I+L P++ N G + R+ F L+ P EK + + ++ Sbjct: 3 IVLYQPEIPYNTGNIGRSCVLTNTTF-----HLIKPLGFSLDEKQVKRAGMDYWHLVDLK 57 Query: 73 VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + +E + + YATT + + +N I+FG E Sbjct: 58 IWESFEEFLEANKGIRLFYATTKTKQRYS---------------DVKYEENDYIMFGPES 102 Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + + I+ P+ P+ SLN+S + +++++E Sbjct: 103 RGIPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae CJB111] gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae CJB111] Length = 182 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR L ++ P +K + D + V + Sbjct: 20 IVLFEPQIPANTGNIARTCAAT-XAPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + +++ + +E Q+ +FGRE GL Sbjct: 77 DSLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165 >gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2] gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192] gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192] gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] Length = 153 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + ++ +FG E GL Sbjct: 63 LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRDDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + + P+ SLN+S V + V+E Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b] Length = 157 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L++P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIHPLGFGWDDKRLRRAG-----LDYHEFT-- 55 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 AI A A L K R +G ++FG E GL + Sbjct: 56 ---AIKHHDNYAAFVAAEAPQRLFALTTKGTPAHSAVRYQAGDY--LVFGPESRGLPADI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LNALPPEQKIRIPMMPESRSMNLSNAVSVVVYEAWRQ 147 >gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1] Length = 158 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 22/170 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G VAR T+L L+ P ++ + V V+ Sbjct: 3 IVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA--GLDYWPHVPLTVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ ++ ++ + + T+AR + ++FG E G Sbjct: 60 ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM--------------LVFGPETTG 105 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L E + L+ + P+ S+N+S A +++++ + + + + Sbjct: 106 LPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPE 155 >gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330] gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330] Length = 187 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 24 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 80 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 S+L+ + L + +++ + E G+ +FG+E GL Sbjct: 81 SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 130 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 131 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 170 >gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315] gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315] Length = 156 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N L L+ P G+P + AR A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N +A D ++A T R F P + +FG E Sbjct: 62 NWDAFVASEAPDPARMFAFTTRGSGRFHDRAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150 >gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 328 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 20/167 (11%) Query: 15 PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 PVI++ N+G + R L + R + +A A + RV Sbjct: 162 PVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVMKVAAGALETLPIARV 221 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL A+ +L +IY T A A L + ++ ++ G E Sbjct: 222 V-NLSRALEELKTAGFWIYGTCA--------------DAGKLLHTVDLNGSIVLVIGSEG 266 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + ++S P+ PSLN S A + ++E V+ Sbjct: 267 SGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQRWVNP 313 >gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9313] Length = 166 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 30/176 (17%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 N + L +P++ N G +AR F + L L+ P ++ + Sbjct: 4 PNKRSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPLGFSLDDRYLRRA--GLDYW 60 Query: 69 DSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V + ++ + H + + R + + + + + Sbjct: 61 PHVDLSVHSDLDTFRKCLPLNHRLIGCS---RFGGIPLRSMRFQTGDV-----------L 106 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWECMEN 171 +FGRE GL ++ + I + P+ SLN+S A ++ +E Sbjct: 107 LFGREDTGLPSKVRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQ 162 >gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 165 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 16/169 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L++P++ +N G + R+ N T+L L+ P SEK + + + V+ Sbjct: 3 IVLLEPEIPDNTGNIGRSCVATN-TRLHLIEPLGFKLSEKRIKRA--GMDYWEKLDLTVY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S+LK+ +N + + A + + + I+FG+E G+ Sbjct: 60 SDLKDFYE----------KNPKAKEHMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPE 109 Query: 135 EEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E +A + I P+ SLN+S +V ++++E + + E Sbjct: 110 EILAENEENCIRIPMWGDIRSLNLSNSVAVILYEALSQHGFEKMQLTGE 158 >gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum H04402 065] Length = 155 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71 I+L P++ +N G +AR N ++L L+ P EK + + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+E D +F ++TT + NNF + + ++ I+FGRE Sbjct: 60 IYESYEELREKYKDSNFYFSTT--HGNNFYTDVKYRD-------------GDFIVFGRES 104 Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL +EI S+ I P+ N SLN+S V ++ +E + Sbjct: 105 SGLP-DEIRDSDPSKCIRIPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10] Length = 197 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 20/168 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q G ++L + + N+G + R F + ++ L P + ++ A + Sbjct: 41 QTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGATESV 100 Query: 69 DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + A+ L + T+ ++ I Q Sbjct: 101 EWI-YVDTVSAALETLKKENYTVIGIEQTSNSQKIGDY-------------HISKDQKYA 146 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GL+ + +AL +A + P SLN+S +++WE + Sbjct: 147 VVLGNEVDGLSEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWEFFK 194 >gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18] gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18] Length = 161 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 24/171 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV+P++ N G +AR T L LV + G+ ++ A D + +R + Sbjct: 9 IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+ A + IY ++ KS L + I+FG+E GL Sbjct: 67 DLEALKRAFPEGRLIY----TSKKAPKSYL-----------ELSFHPGDFIVFGKETKGL 111 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 EE+ ++ + P+ SLN+S + ++++E + + + + Sbjct: 112 P-EELIEAHPETSVRIPIIGRVRSLNLSTSAGIVLYEALRQTGALAGAQAE 161 >gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032] Length = 274 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 6/160 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ P NIG + R+ F + + + KA +S + Sbjct: 110 IPTGPTMLTVVFDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFA 169 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + VRV + ++A+ + R +V+ E + Q I+ G Sbjct: 170 LPVVRVPA--RQAV----LSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGN 223 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GL++ + ++ P++ SLN + A ++++E Sbjct: 224 ETTGLSSGWREACDQVVRIPMSGAASSLNAATAATVVLYE 263 >gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4] Length = 188 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 24/185 (12%) Query: 4 YAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P Q +A G + I+L P++ N G VAR T+L L+ P ++ + Sbjct: 18 SVPSPQPAAAGAMMHIVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA 76 Query: 62 ANADCVIDSV--RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 V V+S+ ++ ++ + + T+AR + Sbjct: 77 --GLDYWPHVPLTVWSSWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM-------- 126 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++FG E GL E + L+ + P+ S+N+S A +++++ + + Sbjct: 127 ------LVFGPETTGLPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELD 180 Query: 177 EKNVK 181 + + Sbjct: 181 QHTPE 185 >gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 17/161 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++IL + + N+G + R F + + L R S SS A + +V Sbjct: 153 IVILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSASVSTTVYKSSVGAIEHVKIAKVTN 212 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 S ++E +IY R V G +I G E G+ Sbjct: 213 LNSTIEELKEKGIWIYGADIRAEEYSYQVDF--------------GGPCAVIIGNEGRGI 258 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + + +I P+ SLN S A ++++E ++ + Sbjct: 259 SKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 299 >gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168] gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168] Length = 159 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 15/163 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEFT-- 55 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A + L K G ++FG E GL Sbjct: 56 ---AVTRHHDYAAFLAAEKPQRIFALTTKGTPAHSVVSYQQGDY--LLFGPETRGLPASI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ P S+N+S AV ++V+E S Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQSGYPGA 153 >gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB] gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB] Length = 154 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 25/168 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L P++ N G + R N +L LV P S+K + + R+ Sbjct: 3 AVVLYRPEIPPNTGNIIRMCANTG-AELHLVEPLGFDLSDKHLRRA--GLDYHEYARIVR 59 Query: 76 NLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + A+A TT K +P A+ N+ +FG E Sbjct: 60 HADWAACKAALAGRRLFAMTT-------KGTASPFSTALEAND--------VFVFGCETS 104 Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL E A + + P+ P SLN+S A + V+E + Sbjct: 105 GLPPEIRAEFSPERCLRLPMLPGQRSLNLSNAAAVTVFEAWRQTGFPG 152 >gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus anginosus F0211] Length = 170 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRA--GLDYWDKLDITYY 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL+E ++ + +++ + E + N +FGRE GL Sbjct: 65 DNLEEFMSKMD-----------GQLYLISKFAEKVYAEENFATAGNHYFMFGREDKGLP- 112 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ ++ + P+N SLN+S V +MV+E + Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMMVYEALRQQ 153 >gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 153 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + + +FG E GL Sbjct: 63 LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + + P+ SLN+S V + V+E Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str. Hildenborough] Length = 159 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 22/170 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G VAR T+L L+ P ++ + V V+ Sbjct: 4 IVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA--GLDYWPHVPLTVW 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ ++ ++ + + T+AR + ++FG E G Sbjct: 61 ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM--------------LVFGPETTG 106 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L E + L+ + P+ S+N+S A +++++ + + + + Sbjct: 107 LPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPE 156 >gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium 2_1_46FAA] Length = 165 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 26/173 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N T+L L+ P +EKA + + + V Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRA--GMDYWEDLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E + ATT A + + + I+FG+E G Sbjct: 61 INYEDFLEKNPNAKIYMATT---------------KAPNVYTDVSYEPDCYIMFGKESAG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + EEI + + I P++ SLN+ +V ++++E + + ++ + Sbjct: 106 IP-EEILVLHKEDSIRIPMSQDIRSLNLGNSVAIVLYEALRQNGFANMETAGH 157 >gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica KT99] gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica KT99] Length = 154 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N QL L+ P +K + D V Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLTCVTRY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ A+A + TT +R + +E F +V ++FG E G Sbjct: 61 KDYASFLVAMAGRRIMACTTKGSRPH--------------SELSFEKGDV-LLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E I + + P+ SLN+S AV ++ +E Sbjct: 106 LPMEIIESLPTSQRLKIPMAGTSRSLNLSNAVAIISYEAWRQ 147 >gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098] gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098] Length = 152 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 68/161 (42%), Gaps = 21/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L+ P+ N+G + R ++L L+ P S++ + + V + Sbjct: 4 IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEKVDLVIH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + + + + P + G +IFGRE+ G+ + Sbjct: 61 DSLEEFMEFV---------KDKRYFLIETPSDKKYTDV-SFKDGDY--LIFGREKEGI-D 107 Query: 135 EEIALS--NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + + + I++ P+ SLN++ +V ++++E + + Sbjct: 108 ESLLKANKDKILTIPMTKKIDRSLNLANSVSIVLYEALRQA 148 >gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583] gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] Length = 168 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ N G +AR N T L L+ P +K + + V + + Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT- 133 A A L + K + + A + G++ +FG+E GL Sbjct: 62 KDSA-AFLAHVAG---------KHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE I P+N SLN+S L+V+E + Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151 >gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii TW07627] gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii TW07627] Length = 157 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N +L ++ P +K + + V Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRA--GLDYHEFTTVTRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +S EA TT + + + ++FG E G Sbjct: 61 HDYSAFLEAENPQRLFALTT---------------KGTPAHSAVSYQDSDYLMFGPETRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + ++ I P+ P S+N+S AV ++V+E Sbjct: 106 LPATILDALPADQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri ATCC 29453] gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri ATCC 29453] Length = 154 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 IIL P++ N G + R N L LV P G+P + ++ A D ++ V Sbjct: 3 TIILYQPEIPPNTGNIIRLCANTGC-DLHLVKPL-GFPLDSSKMKRAGLDYHEFANIVVH 60 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N A+A TT K P + +FG E G Sbjct: 61 ENWDNCMVALAGRRIFALTTKGKTRPDKVAFLPHDV---------------FLFGAETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E +A N I FP+ P S+N+S V + V+E Sbjct: 106 LPAEILASLPDNQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQ 148 >gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814] gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814] Length = 163 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N T+L L+ P +EK + + + V Sbjct: 4 IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRA--GMDYWEHLDVRTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ E ATT A + + + I+FG+E G Sbjct: 61 IDYNDFLEKNPGAKIYMATT---------------KAPKVYTEVNYEPDCYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ SLN+ +V ++++E + Sbjct: 106 IPEEILVEHKEDCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91] Length = 260 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 19/182 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 L + P +LV + N+G R F + + + R S + Sbjct: 84 ALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAVIVPKDRAVGLSATVHKVA 143 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + A + V + L+E + +I TTA A + I Sbjct: 144 SGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTA--------------DASDTLDSITLT 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + + G E G+ + ++S P++ SLN+S + + ++E + ++ Sbjct: 190 RPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQHVQKAKT 249 Query: 179 NV 180 + Sbjct: 250 GL 251 >gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_19] Length = 248 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 30/182 (16%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P + K P I+L V N G +AR + + + + A Sbjct: 87 PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDTIVIPAKGSVSVNADAIK 141 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115 +SA A V+ + ++ +AI L ++A + E A + Sbjct: 142 TSAGALHVLPVCK-EKSINQAIRFLQQSGVKVFAAS--------------EKAAENYTAV 186 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V I+ G E G++ E + + + ++ P SLN+S A ++V+E + + Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246 Query: 176 SE 177 + Sbjct: 247 QQ 248 >gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22] gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22] Length = 276 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 16/166 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74 + P NIG + R+ F + L + K+ +S A V+ S + Sbjct: 121 VFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRS-QSH 179 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + + R + V + E Q V ++ G E GL Sbjct: 180 HEVMEWLE----------KERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGL 229 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ L + +IS P+ SLN S A ++++E + K Sbjct: 230 SSAWRELCDQVISIPMTGSASSLNASNAASVVLYEARRQRLAKQRK 275 >gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC 49814] Length = 272 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 12/167 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64 + + +GP++IL +N+G V R+ F + ++ R+ A + ++ A Sbjct: 111 EDVLANGEGPIVILDQVTDPQNVGAVFRSCAAFG-AKAVIMQTRNSPNLGGALAKAAVGA 169 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I V V + A TA + + V I + + + + I+ Sbjct: 170 IDIIPEVAVV----------NISRAVTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIV 219 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G+ + + ++P SLN+S A + ++E Sbjct: 220 MGAEGSGIRPLIAKGCSQLAKISISPQMESLNVSSAASIALYEANRQ 266 >gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii DSM 44385] gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii DSM 44385] Length = 195 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 24/174 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++N ++ P + N G R L L P EK + Sbjct: 31 TIRNPNPPLHVVFDQPVIPPNTGNAIRMCAGVG-AHLHLCEPLGFNLEEKNLRRAGLDYH 89 Query: 67 VIDSVRVFSNLKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + V + +L E + D +YA T + + + P + VL Sbjct: 90 DLVDVTIHPSLDECLTTLGAGAPDGPKVYAFT--SHTSVRVDTVPYQWGDVL-------- 139 Query: 120 NVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL+ E +A + + P+ P S+N+S A + +E Sbjct: 140 ----LFGCEPTGLSAEALADPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQ 189 >gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum STM815] Length = 156 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P + + + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDSKMRRA--GLDYHEYAQMHVH 60 Query: 75 SNLKEAIA----DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N I +L ++A TT +R P + +FG E Sbjct: 61 RNWDALIEMEAPNLARMFAFTTRGSRPFHSHAFLPGDW---------------FVFGAET 105 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 106 RGLPDAVVERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida GB-1] Length = 153 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + L ++A T + + F V +FG E GL Sbjct: 61 ESLAGCLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ P SLN+S V + V+E Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] Length = 153 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 28/165 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73 ++LV PQ+ N G VAR + T+L LV P S++ + V+ Sbjct: 3 RVVLVCPQIPPNTGNVARTCAATD-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKFHY 59 Query: 74 FSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L EA + +I +T+ + + P + + FG Sbjct: 60 HETL-EAFNQVSQKLGGRWIGFSTSGQYSYVQFQFQPNDW---------------LFFGS 103 Query: 128 ERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 E GL+ + A + P P SLN+S + L ++E Sbjct: 104 ETQGLSPSVLTRCGATVVIPMTQPGVRSLNLSVSAALGLFEARRQ 148 >gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a04] gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133C] gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0082] gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133A] gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133B] gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a01] gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a01] gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133B] gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133A] gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133C] gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0133a04] gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium TX0082] Length = 187 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P + N G +AR N T L L+ P +K + + ++ Sbjct: 24 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 80 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 SNL+ + T NR +++ + +E G+ +FG+E GL Sbjct: 81 SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 130 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 131 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 170 >gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01] gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01] Length = 159 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ N Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ + L R + K ++ + G ++FG E GL E Sbjct: 63 LEAFLEYLE-----NEREGDYRIFACTTKTTGHHVDAKFQQGD--VLMFGPESRGLPAEF 115 Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 116 IESMPMEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 152 >gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. K90mix] gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp. K90mix] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+L +P++ N G + R N L L++P G+ + AR+ A D + V+ + Sbjct: 4 IVLYEPEIPPNTGNIIRLAANTGAA-LHLIHPL-GFELDSARARRAGLDYHELARVQEYD 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+ R R + + L + A SG ++FG E G Sbjct: 62 SLE--------------RWRESIRPQREFALTTRGQARYDQAGFQSGD--ALLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + P+ P SLN+S AV ++V+E Sbjct: 106 LPQAVLDALPPEQRLRLPMQPDSRSLNLSNAVAVVVYEAWRQ 147 >gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. CCGE1001] Length = 156 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + A+ A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAG-LDYHEYAQMNVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +N IA + ++A T R F + A + +FG E Sbjct: 61 ANWAAFIAKESPEPSRMFAFTTRGSGRFH------DHAFAAGDW--------FVFGAETR 106 Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + S + P+ P SLN+S V ++V+E Sbjct: 107 GLPDSVLEQFGSEERVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149 >gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS 5C-B1] Length = 176 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 9/168 (5%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P +++L D + N+G V R+ F + + L P + ++ Sbjct: 13 SVEEFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + R F++ EA+ +L RN S+ + + + + + Q Sbjct: 73 GGEDSVAW-RYFASATEAVEELK-------RNEYFVYSIEQVEGSTKLQHLTLNRHQRYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++FG E G+ + N + P SLN+S ++VWE Sbjct: 125 VVFGNEVKGVNQTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172 >gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 158 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 23/172 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75 +L P++ +N G VAR L L+ P S + V RV Sbjct: 5 VLFQPEIPQNAGNVARTAAALGFP-LHLIRPLGFRLSHPGLKRA--GLDYWPYVDLRVHD 61 Query: 76 N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ + A +AR N R G ++FG E GL Sbjct: 62 TWEAFLAALPPGARVLAFSARGERNLY------------QARFQEGDY--LLFGPETRGL 107 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E + ++ P+ SLN++ AV + +E + + Sbjct: 108 PPEVLGRFPSL-YIPMPGPVRSLNLAVAVGVAAYEAYRQLREAGPGRTPGRG 158 >gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] Length = 150 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G + R+ LT L L+ P EK S SV + Sbjct: 3 IVLFQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRS--GLDYWSSVDLK 57 Query: 73 VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + + EA ++ YATT + + +N I+FG E Sbjct: 58 IWESFEDFLEANRNIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPES 102 Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ E + I+ P+ P+ SLN+S + +++++E Sbjct: 103 RGIPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145 >gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens GS-15] gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens GS-15] Length = 158 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 27/174 (15%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P I+L++P++ N G +AR T L LV + G+ ++ A Sbjct: 2 PEKPPFH-------IVLIEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRA 52 Query: 63 NADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V + +L A+ A F + K+AA E F + Sbjct: 53 G-LDYWSEVEIHYWDDLA-ALQ--------HAYPEGRF--IYTSKKAAKTHIEAAFK-EG 99 Query: 121 VGIIFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+FG+E GL EE+ +N + P+ SLN+S + ++++E + + Sbjct: 100 DFIVFGKETVGLP-EELIEANRENTVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152 >gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4] gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3] gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4] gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + +V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + TT +R + + ++ ++FG E GL Sbjct: 63 FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107 Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P+ SLN+S AV ++ +E Sbjct: 108 MPIIESIPTEQRL-RIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 239 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L + + N G +AR+ F + + R ++ SSA A I V +N Sbjct: 95 IMLDEIEDPYNFGAIARSAEAFGFHGIIIPKRRSALVNDAVYKSSAGAIESIKVA-VVNN 153 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L + I++L ++Y T + ++ G N+ I+ G E GL Sbjct: 154 LSQTISELKENSIWVYGAT--------------MEGDPICDQDLVG-NICIVIGNEGKGL 198 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +IS P+ SLN S A ++++E + Sbjct: 199 GHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQT 238 >gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638] Length = 167 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62 Query: 77 LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + A AR + A + + N ++FG E G Sbjct: 63 YQAFLDSEKLDGAQSTGANAAR-------LFALTTKGTPAHSAVEYQLNDYLLFGPETRG 115 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + I P+ S+N+S AV ++V+E Sbjct: 116 LPPNVLEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 157 >gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM] gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 257 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 23/169 (13%) Query: 11 SAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ +I+V+ + N+G + R+ F + L + +P+ + + SS + Sbjct: 106 PSENASVIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRSSVGC---LF 162 Query: 70 SVRVF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +F S L + HF TT E A +++++ F +I Sbjct: 163 GMNIFQADNQSTLA-FLKKHHFKVYTT-----------FMSEDAQLIHQKDFK-TKTALI 209 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 FG E G+++ + I+ P+ SLN+S AV + +E + + Sbjct: 210 FGTEHSGISDFWKGKAENIL-VPMAGTIDSLNLSNAVAVSCYEILRQRL 257 >gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium PC4.1] gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium PC4.1] Length = 167 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 4 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 S+L+ + L + +++ + E G+ +FG+E GL Sbjct: 61 SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 110 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 111 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 150 >gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma proteobacterium HTCC2148] gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma proteobacterium HTCC2148] Length = 157 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G + R N + L L+ P EK + + V Sbjct: 7 IVLYQPEIPPNTGNIMRLCANTGCS-LHLIEPLGFDLDEKKLRRA--GLDYREFAEVSVY 63 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + TT + P A + ++FG E G Sbjct: 64 PELNTFTAKHPQCRLMGVTTKGS--------TPHHQAAYTS-------GDALLFGPETRG 108 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L ++ I P+ SLN+S A ++ +E + Sbjct: 109 LPASVLSKLPPQQRIRIPMLKNSRSLNLSNAAAVITYEALRQ 150 >gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM 7299] gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM 7299] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L++P++ N+G + R + N +L L+ P + A D D V + Sbjct: 4 IVLLEPRIPGNVGTIGRLAFAMNC-RLHLIKPYGFGEITEKEVRRAGLDYWFDLDVTEYE 62 Query: 76 NLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N+++ + D HF +ATT + + + + G FGRE Sbjct: 63 NIEDFWSKNPLNDRHF-FATTKTKQ-------------VYFDAKYEVGDY--FYFGREDA 106 Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + + I+ P+ SLN++ +V ++ +E + Sbjct: 107 GLPEDLLVKNEKGCITIPMTNDARSLNMANSVSIVAYEALRQ 148 >gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210] gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987] gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A] gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P++ N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 EA++ ++A TA A L + ++FG E GL + Sbjct: 65 HAWEALSP-ARVFAFTA--------------QATTLFTNVGYHAGDVLMFGPEPTGL--D 107 Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E L++ I+ P+ SLN+S A + V+E + Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153 >gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri] Length = 247 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 10/147 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G +AR F + L+ ++KA ++ A ++ V F + E Sbjct: 109 QDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRLNFVT-FDSFDELER 167 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR P+ V ER+ ++ G E GL+++ + Sbjct: 168 --------AARELGMDLYAAEPRADEDVDPERVGDVAKACLVLGTEGQGLSDDALRAC-K 218 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P++ SLN++ A ++ + Sbjct: 219 PVAVPMSGEMESLNVAIAGGILCYLMR 245 >gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis 315-B] gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis 315-B] gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 27/159 (16%) Query: 21 DPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +P++ N G +AR L T+L L+ P +K + + + ++ + Sbjct: 8 EPEIPFNTGAIARTC---GLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIYDSYD 64 Query: 79 EAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + F ATT A L + I+FG E GL E Sbjct: 65 DLLKRFPNSRFYLATT---------------KASKLYTDVKYNDEDVIVFGPETRGLP-E 108 Query: 136 EIALSNA--IISFPVNPLFP-SLNISQAVLLMVWECMEN 171 ++ SN I P+ + SLN+S + ++++E + Sbjct: 109 DLIFSNYDDAIKIPMLKNYGRSLNLSNSANIILFEALRQ 147 >gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis Bt4] gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis E264] Length = 156 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + A+ A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAG-LDYHEYAQMHVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D +A T R F +R F + +FG E Sbjct: 61 RDWDAFVAAEAPDPARTFAFTTRGSGRFH-------------DRAFEPGDW-FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GLT + + P+ P SLN+S V ++V+E + Sbjct: 107 GLTPALVERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 154 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+ +P++ N G R +L LV P SE + + VRV + Sbjct: 3 RILFFEPRIAPNTGNAIRLAAVTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVRVHA 61 Query: 76 NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L+ A + L ++A TA R I ++FG E GL Sbjct: 62 DLEAAWSALRPERVFAFTAHARRYHH--------------EIAYSAGDVLMFGPEPTGLP 107 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E + + + P+ SLN+S A ++ +E Sbjct: 108 PEALGDPHVTESVRIPMLASRRSLNLSNAAAVVAYEAWRQQGFDGG 153 >gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis SK121] gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis SK121] Length = 166 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 23/159 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +P++ N G R + +L LV P SE + + +V V NL Sbjct: 18 FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHENLT 76 Query: 79 EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A + ++A TA A I ++FG E GL+ E Sbjct: 77 AAWEAVTPARVFAFTA--------------HATTSYADIAYQPGDVLLFGPEPTGLSEEV 122 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ ++ P+ P SLN+S A L+ +E Sbjct: 123 L--ADEHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 159 >gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 ++L P++ N G +AR + T L L+ P +K + V++ Sbjct: 3 VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWQFVKIVYH 59 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L + + Y T + K + + G++ IFG+E G Sbjct: 60 ESLDDFFNSSEGGEYFYLT----KYGTKPHSTFDYSNV--------GKDYYFIFGKETTG 107 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L EI + P+N SLN+S ++V+E + Sbjct: 108 LPKNIIEINK-ERALRVPMNDKVRSLNLSNTAAILVYEALRQQ 149 >gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68] gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3] gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591] gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1] gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14] gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3] Length = 181 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 18/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D VR + Sbjct: 17 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 73 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL E + YA ++ +++ +E G +FGRE GL Sbjct: 74 DNLAEFMD-----YA----SKQGRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLP- 123 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P+N SLN+S ++V+E + Sbjct: 124 EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQQ 164 >gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158] gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158] Length = 156 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHG 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFLPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAELLERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 275 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 12/171 (7%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T L+ S K I L + + N+G + R + + LV S + ++ Sbjct: 110 TTTLEALETSGKKRFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + V ++ E R + A + +++ Sbjct: 170 MGA--LFSNNIVLASFTEFDN----------WRRKANIKMAAASVNGTMRHDQAEYSSKS 217 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E+ G+ + +I P+ SLN++QA +M +E + S Sbjct: 218 VILMGNEQSGIPEAAENACDILIKIPMAGAADSLNLAQATAIMTYEVWKGS 268 >gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180] gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180] Length = 158 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 19/169 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL +P++ N G V R N +L L+ P ++ + VR ++ Sbjct: 4 IILYEPEIPPNTGNVMRLTANLG-ARLHLIEPLGFSLDDRQLRRAGLDYREWADVRTHAS 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A L + A + R R ++ G +FG E GL Sbjct: 63 LAACLATLEQPRLLAVSTRGR------------VPYVDLEFQPGD--AFLFGPETRGLPE 108 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + + P+ P SLN+S AV ++++E + ++ Sbjct: 109 SVLESVSEEHRLQIPMRPGNRSLNLSNAVAVVLYEAWRRQGFAGAAEIR 157 >gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans 2CP-C] gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 14/173 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +N+ V R F + L V P P ++ + S NAD +D VR +S+ E +A Sbjct: 38 PQNVNAVLRTCEAFGIQTLHAVEGPMK--PYDRNKKISQNADKWLD-VRRWSSTAECLAH 94 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L R+ E + + F+G V ++FG E+ G++ E +A+++A Sbjct: 95 L--------RSEGFAIYATHLGERSTPMAGLSFAG-KVALVFGNEQRGVSEEALAVADAC 145 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + P+ SLN+S A + + +E V ++ + A F Sbjct: 146 YAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRHGDLPDDEAQVLR-ERFY 197 >gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] Length = 168 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 S+L+ + L + +++ + E G+ +FG+E GL Sbjct: 62 SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 112 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151 >gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 158 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 29/173 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L++ TT + V A + VL +FG Sbjct: 61 KNYQAFVEYLEKERQTFRIFACTT---KTTGHHVDANFQQGDVL------------LFGP 105 Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E GL E I I P+ P SLN+S AV ++ +E + Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158 >gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01] gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01] Length = 159 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + TT + ++ + G ++FG E Sbjct: 63 YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I I P+ P SLN+S AV ++ +E Sbjct: 108 TRGLPAEVIESLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326] gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326] Length = 158 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I L + R N++ K ++ G ++FG E GL E Sbjct: 63 YQAFIEYLE-------KERENYRIFACTTKTTGHHVDANFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 I I P+ P SLN+S AV ++ +E + Sbjct: 114 LIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158 >gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO] gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1162] gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1636] gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1679] gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO] gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1636] gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1679] gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1162] Length = 167 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 4 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 SNL+ + T NR +++ + +E G+ +FG+E GL Sbjct: 61 SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 110 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 111 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 150 >gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103] gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103] Length = 233 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 25/179 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS++ R +S++ +V ++ +AI+ Sbjct: 30 PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVVTHRSINDAIS 84 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L I AT N + +E I + I+ G+E+ G+T+E +A Sbjct: 85 HLKTQNMQILAT-----NLSADAVDFRE--------IDYTKPTCILMGQEKTGITDEALA 131 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 L++ I P+ + SLN+S A L+++E ++ ++ + A + + + Sbjct: 132 LADRHIIIPMVGMVQSLNVSVASALILYEAQRQR-QNAGMYQRQTSLLAPEEQQRLLFE 189 >gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii MLHE-1] gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii MLHE-1] Length = 153 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+P++ N G V R N L LV+P + + + RV Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTG-AHLHLVHPLGFRLDDTRLRRA--GLDYHEWARVAEH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R R ++ V ++ ++FG E GL Sbjct: 61 PSLVDCLRQV--------RPRRA-WALST---HGSVGYHQVRYAPGDALVFGCETGGLRR 108 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E+ + + P+ P S+N+ +V ++++E + Sbjct: 109 -ELTRFSPGRRLRLPMRPESRSMNLGNSVSVVLYEALRQQ 147 >gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909] gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909] Length = 165 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 32/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N QL L+ P +K + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRA--GLDYHEFASIKHH 60 Query: 74 --------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 NL A TT + + + ++F Sbjct: 61 HDYQAFLDCENLDSA-QPARLFALTT---------------KGTPAHSAVSYQADDYLLF 104 Query: 126 GRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL + + I P+ S+N+S AV ++V+E Sbjct: 105 GPETRGLPASVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152 >gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 167 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 26/180 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L+ P++ +N G + R N QL LV P + + + V+V Sbjct: 3 RIVLLTPEIPQNTGAIIRLAANTG-AQLHLVEPLGFSLDARHVRRAGLDYHELADVQVHR 61 Query: 76 NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L A A L + TT E VL +FGRE G Sbjct: 62 DLDAAWAALLPARVHAFTTTGTE----HHTDVDYERGDVL------------LFGRESTG 105 Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPA 187 L E+ + + + P+ P SLN++ AV + V+E + V + A Sbjct: 106 LP-AEVQAAPQVTDRVRLPMIPGSRSLNLANAVSVAVYEAWRRLGFAGAATPVGPRAGEA 164 >gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC 51100] Length = 183 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 21 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDISFY 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R K + E + +FGRE GL Sbjct: 78 ESLDDFMKQMD------GRLYLISK-----FAEKVYSEENFSAEGPHYFMFGREDTGLP- 125 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 126 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 179 >gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella putrefaciens 200] Length = 154 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ + TT +R + E F+ +V ++FG E GL Sbjct: 63 FDAFLEAMTGKRIMACTTKGSRPHT--------------ELSFAKNDV-LLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654] Length = 267 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 21/178 (11%) Query: 8 LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + PV++L+ N+G + R+ F R V + + + + A Sbjct: 104 MGDGDRPPVVVLLDRVTDPHNVGAILRSAEVFGA---RAVIGTKHHSAPETGALAKTASG 160 Query: 67 VIDSVRV--FSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +NL +A + D+ + + ++ L+P SG Sbjct: 161 ALERQPYLRVTNLADAMGTLKDMGYTVLGLAGEADDDIADALSP-----------LSGHA 209 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 V ++ G E GL + +A++ P F SLN+S A + ++ V+ Sbjct: 210 VALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNAAAVSLYAVTRAQGVAPRP 267 >gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 152 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N G + R + N T+L L+ P EK + + + V+ Sbjct: 3 IVLLNPEIPYNTGNIGRTSVLTN---TKLHLIKPLGFSLDEKQLKRAGLDYWHLVDLVVW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +E + YATT + I +N ++FG E G Sbjct: 60 ESYEEFVEANKGARIFYATTKTKQRYS---------------DIEFKENDFVMFGPESRG 104 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + EEI ++ I+ P+ + SLN+S + ++++E + + Sbjct: 105 IP-EEILNAHKENCITIPMIDMGRSLNLSNSAAIILYEALRQT 146 >gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria IOP40-10] gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MEX-5] gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria IOP40-10] gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MEX-5] gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria MC40-6] Length = 156 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 +ILV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VILVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 107 GLPADVLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 153 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 16/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P I+LV PQ+ +N G VAR T+L LV P S++ + V++ Sbjct: 2 PNIVLVYPQIPQNTGNVARTCAATK-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLN 58 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ E H R K + + N ++FG E GL Sbjct: 59 YHNDWAE-FKVYHHKLG--GRLIGFSK-------MGKLNYTKFQYQTNDWLLFGSETNGL 108 Query: 133 TNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 + + +A + P P SLN+S + L ++E Sbjct: 109 PKDVLNYCSATLYIPMTQPNVRSLNLSVSAALGLFEARRQ 148 >gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis excentricus CB 48] gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis excentricus CB 48] Length = 322 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%) Query: 13 KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + PV++++D +NIG + R F L + + ++A A + Sbjct: 163 ERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIMQDRHSPVMQGVLAKTAAGAMDRVPFA 222 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 RV +NL A+ L ++ ++VL + + S + + I+ G Sbjct: 223 RV-TNLSRALESLTENGFVSLGMAGEAEHSLQAVLEQQGW-----RQAGSPRALVIVMGS 276 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL + ++ P+ F SLN+S A + ++E + ++ Sbjct: 277 EGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYEALGRAV 322 >gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis AJ13355] Length = 233 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 25/179 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS++ R +S++ +V ++ +AI+ Sbjct: 30 PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVVTHRSINDAIS 84 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L I AT N + +E I + I+ G+E+ G+T+E +A Sbjct: 85 HLKTQNMQILAT-----NLSADAVDFRE--------IDYTKPTCILMGQEKTGITDEALA 131 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 L++ I P+ + SLN+S A L+++E ++ ++ + A + + + Sbjct: 132 LADRHIIIPMVGMVQSLNVSVASALILYEAQRQR-QNAGMYQRQASLLAPEEQQRLLFE 189 >gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B] gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B] Length = 159 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + L R N K ++ + +G ++FG E GL E Sbjct: 63 YQAFLEYLEK-----ERQGNYRLFACTTKTTGHHVDAQYQTGD--VLMFGPETRGLPAEI 115 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2] gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2] Length = 167 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N T L L+ P +K + V + Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKHLKRA--GLDYWHDVHITYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132 +L ++ L + + + A + + + ++ +FG+E GL Sbjct: 61 KDLAAFMSFL------------GDRPLYLISKFANRVYSEVDYTTHEDQFFLFGKETTGL 108 Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + ++ + P+N SLN+S L+++E + Sbjct: 109 PETFMREHADKCLRIPMNDAHVRSLNLSNTAALIIYEALRQQ 150 >gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 262 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 19/152 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G V RA F + + R S A SA I + NL A+ Sbjct: 126 QDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQ-PPNLARALE 184 Query: 83 ----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 ++ T+ E A I + + I+ G E GL + Sbjct: 185 LAKKSGVWVLGTS--------------EHAQQPLSSIKADRPWLIVIGNEEGGLRRLTLE 230 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + + P SLN+S A ++++ Sbjct: 231 LCDEVCTIPSQGAVGSLNVSVATGILLYALSR 262 >gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85] Length = 172 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 30/189 (15%) Query: 1 MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M+P P L + + ++ V P++ N G R +L LV P SE Sbjct: 1 MSPDRPANGHRALCHDRRMFRLLFVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSE 59 Query: 56 KARSSSANADCVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + + SV V ++L EA++ ++A TA A L Sbjct: 60 PKLRRAGLDYHDLASVTVHASLAHAWEALSP-ARVFAFTA--------------QATTLF 104 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWEC 168 + ++FG E GL +E L++ I+ P+ SLN+S A + V+E Sbjct: 105 TNVGYHAGDVLMFGPEPTGL--DEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEA 162 Query: 169 MENSIVSSE 177 + Sbjct: 163 WRQHGFAGA 171 >gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27] gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8] gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27] gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8] Length = 149 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 23/159 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75 +L P++ +N G VAR L L+ P S + V R+ Sbjct: 5 VLYQPEIPQNAGNVARTAAALGWP-LHLIRPLGFLLSSPKLKRA--GLDYWPHVDLRLHD 61 Query: 76 NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + EA+ ++A +AR A + R G ++FG E GL Sbjct: 62 SFAAFLEALPRGARVFAFSARGE------------ASLYEARFREGDY--LLFGPESRGL 107 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + P+ SLN++ AV + +E Sbjct: 108 PEEVLARFPTL-KIPMPGPVRSLNLAVAVGVAAYEAYRQ 145 >gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter johnsonii SH046] Length = 249 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 20/154 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + + +V PRD + AR +A + ++V + L + Sbjct: 108 PHNLGACIRTAAAMGV-EAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQ 165 Query: 80 AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + + T +L E A+ L + F+G V ++ G E GL + Sbjct: 166 IKDEFNVRVVGT----------MLD--EKALPLQQFDFTGTAVCVVMGAEDTGLRPITQS 213 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E Sbjct: 214 QCDQTVYIPMAGNLQSLNVSVATGMALYEACRQR 247 >gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL J1-208] Length = 160 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + S ++ +FG+E Sbjct: 61 YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDSNKDYFFVFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDSLLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM 15897] gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM 15897] Length = 243 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 18/167 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG I+LV+P N+G + R M F L ++ P + SS A + + Sbjct: 90 KGNHIVLVNPMDMGNMGTIMRTMLGFGYQDLAIIRPAVDIFNPHVVRSSMGALFSL-RIH 148 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131 + ++ E + + P ++ +IFG E G Sbjct: 149 YYESIDEYLKEF-------------GDHQCYPFMLKGAKNIHQVKPVTPHSLIFGNESSG 195 Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L ++I ++ + P SLN++Q+V + ++ +++ E Sbjct: 196 L--DDIYMTYGQSVFIPHTNAIDSLNLAQSVGIGLFHFSQDAFNKQE 240 >gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC 15579] Length = 160 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ +N G +AR N ++L L+ P EK + + Sbjct: 10 IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWKYLDLT 64 Query: 73 VFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + L+E D +F ++TT + I+FGRE Sbjct: 65 IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 109 Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL +EI S+ I P+ N SLN+S V ++ +E + Sbjct: 110 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 153 >gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110] Length = 261 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 11/151 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + + K +SA + V +F + Sbjct: 120 QDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWF---QVPIFVT-----S 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL + +++N +++A A ++ + I+ G E GL+N I+L++ Sbjct: 172 DLTTVI---KKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLADN 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++S P+ P SLN++ A L+++E I Sbjct: 229 LVSIPLGPGVESLNVAIATALLLYEAKRQKI 259 >gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas entomophila L48] Length = 153 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 23/166 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + L ++A T + + F V +FG E GL Sbjct: 61 ESLAGCLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + + + P+ P SLN+S V + V+E + Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQQGFAG 152 >gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1] gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32] gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. W3-18-1] gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella putrefaciens CN-32] Length = 154 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N QL L+ P EK + + +V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ + TT +R + + ++ ++FG E GL Sbjct: 63 FDAFLEAMTGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 233 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 18/152 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R+ + Q+ V WP + R +++ + +D+V+ + +EA Sbjct: 32 NIAAVLRSADCVGIHQIHAV-----WPDDDMRVSGNTASGSQQWVDTVKHY-TFEEA--- 82 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 H + + + + + V I Q I+ G ER G++ E IA ++ Sbjct: 83 -HQAF-----KKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAAADQH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I P+ + SLN+S A L+++E V+ Sbjct: 137 IIIPMRGMVQSLNVSVAAALVMYEAQRQREVA 168 >gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM B1551] gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium DSM 319] gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM B1551] gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium DSM 319] Length = 152 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSN 76 L P++ N G +AR N T L LV P +K + + +V + Sbjct: 2 LFQPEIPANTGNIARTCAATN-TTLHLVRPLGFSTDDKMLKRA--GLDYWEFVNVVYHDS 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133 L+E F + + + Q+ +FGRE GL Sbjct: 59 LEEVFEKY---------PEAGFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHI 109 Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + P+ SLN+S ++++E + Sbjct: 110 IEENMERC---LRLPMTENVRSLNLSNTAAILIYEALRQQ 146 >gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO] gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1039] gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1071] gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium U0317] gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1071] gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium U0317] gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium E1039] Length = 170 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P + N G +AR N T L L+ P +K + + ++ Sbjct: 7 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 SNL+ + T NR +++ + +E G+ +FG+E GL Sbjct: 64 SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 113 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 114 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 153 >gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68] Length = 168 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +P + N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 SNL+ + T NR +++ + +E G+ +FG+E GL Sbjct: 62 SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 112 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151 >gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL N1-067] gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL S4-171] Length = 169 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + ++ + H F + + + ++ IFG+E GL Sbjct: 61 YDSMDDFFEKNH---------GGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLP 111 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E+ +N + P+ SLN+S ++ +E + Sbjct: 112 -DELLQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151 >gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016] gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016] gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 157 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 58/172 (33%), Gaps = 28/172 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F + E + TT + ++ + G ++FG E Sbjct: 61 KNYQAFLDYLEQRGEYRIFACTTKTTGH-------------HVDAQYRQGD--VLLFGPE 105 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E I + I P+ P SLN+S AV ++ +E K Sbjct: 106 TRGLPMEVIESLPMSQRIRIPMMPDARSLNLSNAVAIIAFEAWRQLGFQGAK 157 >gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans CH34] gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34] Length = 156 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 65/164 (39%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G V R N QL LV P G+P E AR A + RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +A D ++A T F V AP + +FG E Sbjct: 61 ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDW---------------FVFGSET 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E E S I P+ P SLN+S V ++V+E Sbjct: 106 RGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098] gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098] Length = 161 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 12/158 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L +P++ N G +AR + + L L+ P ++ + VR V+ Sbjct: 3 IVLFEPEIPPNTGNIARLCASTGIH-LNLIEPLGFKLEDRYLKRA--GLDYWPHVRMDVW 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++ A TA N + + + ++FG E GL Sbjct: 60 PDWD------SWLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPP 113 Query: 135 EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171 E + S + P+ S+N+S A ++++ M + Sbjct: 114 EILKRSPYKVRIPMLKDSVRSINLSTAAGIVLFTAMSS 151 >gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 170 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 8 IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRA--GLDYWDKLDITYY 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL+E ++ + +++ + + E + N +FGRE GL Sbjct: 65 DNLEEFMSKMD-----------GQLYLISKFAEKVYVEENFATAGNHYFMFGREDKGLP- 112 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ ++ + P+N SLN+S V ++V+E + Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMLVYEALRQQ 153 >gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 238 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 17/178 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N V R+ F + + +V P E + + +AD + +V S++++AI L Sbjct: 59 PHNQAAVLRSAEAFGIQDVHVV--TGAAPFEPNKWVTRHADKWL-NVHKHSSIEQAIRHL 115 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 +N ++ + + E+I + ++FG E G++ E +AL++ Sbjct: 116 Q---------QNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEALALADGKF 166 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 P+N S NIS A + ++E + + + + + + A K E+ ++ Sbjct: 167 VIPMNGFVQSFNISVAAAISLYEITKRAKQVAGE--RYHLSLAEKKEI---YEHWMKL 219 >gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657] gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum Bf] gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 155 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71 I+L P++ +N G +AR N ++L L+ P EK + + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+E D +F ++TT + I+FGRE Sbjct: 60 IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104 Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL +EI S+ I P+ N SLN+S V ++ +E + Sbjct: 105 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 148 >gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 151 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLQRH 60 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + L TT +R P A + +FG E G Sbjct: 61 ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFVA-------GDAFLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + ++ + P+ SLN+S V + V+E Sbjct: 106 LPAEVLDALPADQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3] Length = 248 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 30/182 (16%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P + K P I+L V N G +AR + + + + A Sbjct: 87 PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDAIVIPAKGSVSVNADAIK 141 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115 +SA A V+ + ++ +AI L ++A + E A + Sbjct: 142 TSAGALHVLPVCK-EKSINQAIRFLQQSGVKVFAAS--------------EKAAENYTAV 186 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V I+ G E G++ E + + + ++ P SLN+S A ++V+E + + Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246 Query: 176 SE 177 + Sbjct: 247 QQ 248 >gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 23/187 (12%) Query: 2 TPYAPQLQNSAK---GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P A L + G +++L N+G + R+ F + + + R P A Sbjct: 46 APPAESLNAVLEPTHGLLVVLDQITDPHNVGAILRSCAAFGV-RAVICQDRKSPPFFGAL 104 Query: 59 -SSSANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 ++ I V+V L + EA L + Sbjct: 105 CKTAVGTAETIPQVQVTNIADTLIALQEAGRHVIGLAG-------------EAEARLGDE 151 Query: 115 IFS--GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I + G + ++ G E GL +++ P+ P SLN+S A + ++E Sbjct: 152 IAAHAGPGLVLVLGAEGSGLRPRVAEHCSSLARIPMGPKAESLNVSNAAAIALYEASRFD 211 Query: 173 IVSSEKN 179 + K Sbjct: 212 PRINPKP 218 >gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 190 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L PQ+ +N G +AR N T L ++ P ++ + D V + Sbjct: 28 VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 84 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 +++E + +++ + +E G+ +FGRE GL Sbjct: 85 DSIEEFMEKCD-----------GQVHLISKFAEKVYSDENYNDGKYHYFLFGREDKGLPE 133 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 N E + P+N SLN+S V ++V+E + Sbjct: 134 AFMRENPE-----KALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 176 >gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16] gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16] Length = 157 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 17/166 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L P++ N G +AR N T L L+ P ++ + +V + + Sbjct: 5 IVLYQPEIPANTGNIARTCAGTNAT-LHLIRPLGFSTEDRMLKRAGC--DYWPNVTIHYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++E F + + + + +FG+E GL N Sbjct: 62 DSIEELFETY---------PEGLFYYIETVGSKPYTDFDFRNTEVDHFFVFGKETTGLPN 112 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +N + P L SLN+S ++++E + + + Sbjct: 113 H-LTEANTERCLRIPQTDLIRSLNLSNTAAIVLYEALRQQGFPNVQ 157 >gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 167 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ N G +AR N T L L+ P +K + ++ Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132 +L A + F+ A + + + A + + + + IFG+E GL Sbjct: 61 KDLA---AFMDFLGA---------RPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL 108 Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176 + + + P+N SLN+S L+++E + Sbjct: 109 PESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQ 154 >gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473] gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473] Length = 157 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + S++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTWDDKRLRRAGLDYHEFASIKRHHD 62 Query: 77 LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A D ++A T + P +A + N ++FG E GL Sbjct: 63 Y-QAFLDSEKPDRLFALTTKG--------TPAHSA------VNYQDNDFLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 108 ASILEALPAQQKIRIPMQPNSRSMNLSNAVSVVVYEAWRQ 147 >gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 264 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 17/158 (10%) Query: 17 IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P+ NIG + R + + + NP+ + + + SS ++ + + Sbjct: 115 IVLVIEAPEKPGNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTA-IA 173 Query: 75 SNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 S+++ + + AT A N ++ ++ G E GL Sbjct: 174 SSIEVIAYLKENKITIATAAINSKAVPY------------DQFEYTPPCALVMGTESTGL 221 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +N + P+ SLN+S + ++++EC Sbjct: 222 DQLWLNETNQNLMIPMADEVDSLNLSVSAGILMYECQR 259 >gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM 17241] Length = 264 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 10/148 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + L + K +S V +L +IA Sbjct: 127 QDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVFR-ARACVSDDLSASIA 185 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R P E ++ L + G ++ G E G+ E AL + Sbjct: 186 --------ALRAAGVPVWAAMPAEGSVSLRDISLHGGG-AVVVGNEGGGIAPELAALCDG 236 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P+ P SLN + A +++WE Sbjct: 237 ALTIPMEPGCESLNAAMAAGVILWEMYR 264 >gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 288 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 20/182 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + + + ++ PVI++ + N+G + R + + R + Sbjct: 121 LADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMK 180 Query: 60 SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A A + RV NL A+ +L ++Y A++ + ++ Sbjct: 181 VAAGALEYLPVARVV-NLNRALEELKAAGFWLYGAAAKSGKSLHTINL------------ 227 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +G++ G E GL+ + ++S P+ PSLN S A + ++E + Sbjct: 228 --TGAIGLVLGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQRWQN 285 Query: 176 SE 177 S Sbjct: 286 SP 287 >gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM 14977] gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM 14977] Length = 149 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 25/167 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+L +P++ +N+G VAR T+L LV P + + VR Sbjct: 2 PRIVLYEPEIPQNVGNVARTAAAT-RTELHLVRPFGFRWGDPRLKRA--GLDYWPHVRYV 58 Query: 75 -----SNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + EA+ ++A +T R+ ++ P + ++FG E Sbjct: 59 LHDSWTAFLEALPAGARVWAFSTKAERSLYEVRFHPDDY---------------LLFGPE 103 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GL +A A+ P+ SLN++ +V + V+E + + Sbjct: 104 TRGLPQAVLARFPAL-RIPMPGPVRSLNLAVSVGVAVYEVLRQNPEP 149 >gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae ATCC 29220] gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae ATCC 29220] Length = 157 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135 + + A A L K G ++FG E GL Sbjct: 54 FTAVLRHPDYA-AFVAAEHPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + I P+ P S+N+S AV ++V+E Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 181 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 19/166 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ +P++ N G R + +L LV P SE + + SV V Sbjct: 30 RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHE 88 Query: 76 NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL+ A L ++A TA A + ++FG E GL Sbjct: 89 NLEAAWDALRPERVFAFTA--------------HASTSYADLAYQPGDVLLFGPEPTGLA 134 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + A + P+ P SLN+S A ++ +E + Sbjct: 135 QDVLEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQHGFAGG 180 >gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC 29176] gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC 29176] Length = 169 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R T+L L+ P +EK+ + + V Sbjct: 4 IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRINEKSLKRA--GMDYWKDLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + ATT A + + Q+ I+FG+E G Sbjct: 61 INYQDFLDKNPGAKIYMATT---------------KAHKVYTEVDYEQDCYIMFGKESAG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ SLN+ +V ++++E + Sbjct: 106 IPEEILVDHEEDCMRIPMIGDIRSLNLGNSVAIVLYEALRQ 146 >gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius ATCC 35311] gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius ATCC 35311] Length = 168 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 31/167 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N T L L+ P +K + V + + Sbjct: 5 IVLFEPQIPANTGNIARTCAATN-TALHLIEPLGFSTDDKHLKRA--GLDYWSKVEITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGL 132 NL + +L K + + A + I Q IFG+E GL Sbjct: 62 ENLPSFLNEL------------GDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGL 109 Query: 133 T------NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 N+E + P+N SLN+S L+++E + Sbjct: 110 PETFMRQNKE-----KCLRIPMNDQHVRSLNLSNTAALVIYEALRQQ 151 >gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str. Langeland] gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. Langeland] gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum F str. 230613] Length = 155 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71 I+L P++ +N G +AR N ++L L+ P EK + + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+E D +F ++TT + I+FGRE Sbjct: 60 IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104 Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL +EI S+ I P+ N SLN+S V ++ +E + Sbjct: 105 SGLP-DEIKDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC 3502] gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC 19397] gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall] gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra] gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch Maree] gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto] gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502] gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 155 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71 I+L P++ +N G +AR N ++L L+ P EK + + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+E D +F ++TT + I+FGRE Sbjct: 60 IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104 Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL +EI S+ I P+ N SLN+S V ++ +E + Sbjct: 105 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148 >gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 178 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 11/168 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 16 STEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTAL 75 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNV 121 A+ +D + N EA+ +L RN + E +I+LNE + Sbjct: 76 GAEFTVDW-KYVDNAVEAVDNL--------RNGGYTVYSVEQAEGSIMLNELTLDRTGKY 126 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 127 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 174 >gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353] Length = 167 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D +++ + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLKITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R K + E + + +FGRE GL Sbjct: 62 ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 110 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163 >gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 18/175 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +N+ V R F + L + P P ++ + S NAD +D VR +S+ E +A Sbjct: 38 PQNVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSSTAECLAH 94 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L R+ E + + F+G V ++FG E+ G++ E +AL++A Sbjct: 95 L--------RSEGFAIYATHLGERSTPMAGLSFAG-KVALVFGNEQRGVSEEALALADAC 145 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFL 196 + P+ SLN+S A + + +E V ++ + P + ++ F Sbjct: 146 YAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH---GDLPEDEAQVLRERFY 197 >gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134] gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134] Length = 156 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G V R N QL LV P G+P E AR A + RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129 + +A D ++A T F V P + +FG E Sbjct: 61 DSWDALMASEQPDPSRMFALTTHGSTPFGQVSFQPGDW---------------FVFGSET 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E E + I P+ P SLN+S V ++V+E Sbjct: 106 RGLAPERRESFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 156 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 14/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L P++ N G +AR LT L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI-- 58 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 E+I A N+ + + + + IFGRE GL N Sbjct: 59 TYHESIE------AFFESTEGNYYLLTKFGKQTYSDFNFSNTEEEHYFIFGRETTGLPNW 112 Query: 136 EIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P++ SLN+S L+++E + Sbjct: 113 VKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150 >gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042] Length = 157 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLVFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 180 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++IL + + NIG V R F + ++ L P+++ ++ A + Sbjct: 19 KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127 V + L A+ L + ++ + + E + +LN+ +G Q IIFG Sbjct: 79 AWEYVENTL-SAVEKL--------KEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 130 EVKGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172 >gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae Ep1/96] gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae Ep1/96] gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617] Length = 156 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL ++ P +K + ++R ++ Sbjct: 3 IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + +A + + F L K +G ++FG E GL Sbjct: 62 YE--------AFAASEAPQRLF--ALTTKGTPAHSAVSFQAGDY--LLFGPETRGLPARV 109 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 110 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 146 >gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1] gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1] Length = 150 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 19/155 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 I+L++P++ N G + R ++L LV P G+ AR A D ++ V ++ Sbjct: 5 IVLMEPEIPTNTGNIGRLSLASG-SKLHLVKP-FGFEITDARLKRAGLDYWQHLE-VHIY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N E A +N K ++ + I + ++FG+E GL+ Sbjct: 62 ENTAEFYA------------KNAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSE 109 Query: 135 EEIALSNAII-SFPV-NPLFPSLNISQAVLLMVWE 167 E + + + + P+ + SLN++ AV ++V+E Sbjct: 110 EIVENNKEHLYTIPMFSEHIRSLNLANAVSIVVYE 144 >gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 158 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N T L LV P +K + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLMKRA--GLDYHEYAEVRQH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++A + ++A TT ++S+ P + +FG E Sbjct: 61 AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDW---------------FVFGAES 105 Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GL E + + P+ P SLN+S AV + V+E + + + Sbjct: 106 RGLPPELRDAFPPAQRL-RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158 >gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM 4028] gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM 4028] Length = 158 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L +P++ N G +AR + T+L L+ P +K + V R++ Sbjct: 3 IALYEPEIPPNTGTIARLCAA-STTRLNLIEPLGFSLDDKYLKRA--GLDYWPHVDKRIW 59 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + T+AR + + I+ G E GL Sbjct: 60 PSWPAFLEGRDPGRLVFTSARQGVAYHRFSFRADD--------------IIVLGPETRGL 105 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 E + + +I P+ S+N++ A ++++E + E +++E A Sbjct: 106 PPEVLHDAQDLIRIPIWGEVRSVNLANAAAVLLYEAYRQT---GELDLREGRPAAP 158 >gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 160 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G + R N QL LV P G+P + A+ A D +++V Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAGLDYHEYANMQVHQ 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGRERW 130 + + +A +R + A+ + +FG E Sbjct: 62 DWDQFLA-----------HRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETR 110 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E E ++ I P+ P S+N+S V ++V+E Sbjct: 111 GLAPERRESFPTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQ 153 >gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral taxon 274 str. F0058] Length = 248 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 12/173 (6%) Query: 1 MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 ++ P L + K P+I+ L N G ++R + + L + + A Sbjct: 86 ISDIIPTLYEAGKTPLIVALDGVTDIRNFGAISRTCECAGVDAILLPSYCSATINADAVK 145 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +SA A + R NL +AI L T ++A E A + Sbjct: 146 TSAGALHYLPVCRT-DNLCQAIKFLKNSGFT----------IIALSEKANIAYTDQDYSS 194 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+++E ++L ++ + PV SLN+S A ++++E +++ Sbjct: 195 PTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIYEAVKSR 247 >gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121] gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121] Length = 157 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G V R N +L L+ P EK + + V+ + Sbjct: 4 IVLYQPEIPPNTGNVIRLCANTG-YKLHLIEPLGFDLDEKKVRRAGLDYHELARVKRHKD 62 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ +YA T + P EA N+ ++FG E GL Sbjct: 63 WQAFVDSQEIGKVYALTTKGSK------VPSEAKFEAND--------VLVFGPETRGLPI 108 Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E E + + P+ P SLN+S V +MV+E + + Sbjct: 109 EFIEALPAEQRLRLPMQPNSRSLNLSNTVAIMVYESWRQLDYAMPLEAE 157 >gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82] Length = 160 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ S E L G ++FG Sbjct: 55 --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3] gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3] Length = 159 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + TT + ++ + G ++FG E Sbjct: 63 YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + I I P+ P SLN+S AV ++ +E Sbjct: 108 TRGLPADVIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287] Length = 180 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++IL + + NIG V R F + ++ L P+++ ++ A + Sbjct: 19 KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127 V + L A+ L + + + + E + +LN+ +G Q IIFG Sbjct: 79 AWEYVENTL-SAVEKL--------KEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 130 EVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172 >gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573] gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573] Length = 158 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + L R R F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113 Query: 136 EIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 114 LITSLPTEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151 >gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 17/176 (9%) Query: 4 YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60 P L + G +++L D N+G + R+ + + L PR P +A Sbjct: 106 ALPPLDDVLAGARTIVVLEDLVDHTNVGAIFRSAAGLGVDAIVL-APRCADPLYRRAVKV 164 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFS 117 S A + R L + L T R L P E ++ L + Sbjct: 165 SMGAVFTLPHTR----LDDWYGGLD-----TLRAAGFHLMALTPGEGSLPLRDAMAALAP 215 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 G VG++ G E GL++ + + A + P+ SLN++ A + +E + Sbjct: 216 GDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVDSLNVTAAAAIACYELTRAT 271 >gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787] gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787] Length = 164 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N T+L L+ P +EKA + D + V Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRA--GMDYWDDLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + E ATT A + + + I+FG+E G Sbjct: 61 IDFQDFMEKNPGAKIYMATT---------------KAPNVYTDVNYEPDCYIMFGKESAG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + EEI + + I P+ SLN+ +V ++++E + Sbjct: 106 IP-EEILIHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 157 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + A + L K G ++FG E GL Sbjct: 54 FTAVVRHHDYA-AFLGSEKPQRMFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPATI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM 14600] gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM 14600] Length = 169 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 41/192 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 IIL +P++ N G + R T L L+ P ++K + + VR + Sbjct: 5 IILHEPEIPANTGNIGRTCVAIGAT-LHLIEPLGFVINDKNLARA--GMDYWKQLDVRTY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ A D ATT + + G + I+FG+E G Sbjct: 62 LDWEDFCAKNPDARIWMATT---------------KGRHVYSDVSYGPDDYIMFGKESAG 106 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 + E + I P+ SLN+S +V ++ +E + + Sbjct: 107 IPEEILIRQPERC---IRIPMQGEIRSLNLSNSVAIVAYEALRQNHFDKMT--------- 154 Query: 188 TKGELLSFLDYL 199 TKG+L + Sbjct: 155 TKGQLHRL--HW 164 >gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes HCC23] gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes HCC23] gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99] Length = 169 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + ++ +FG+E Sbjct: 61 YDSLDEFFKKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 4b H7858] gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes Clip81459] gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL J1-175] gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes FSL N1-017] gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956 gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes serotype 4b str. F2365] gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 4b H7858] gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes FSL N1-017] gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816] gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220] gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott A] Length = 169 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + ++ +FG+E Sbjct: 61 YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDALLQKNEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] Length = 152 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L+ P+ N+G + R ++L L+ P S++ + + V + Sbjct: 4 IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEHVDLVIH 60 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E + D + T + K E L IFGRE+ G Sbjct: 61 DSLEEFMDYVKDKRYFLIETGTQK---KYSDVNFEDGDFL------------IFGREKEG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 + ++ + II+ P+ SLN++ +V ++++E + Sbjct: 106 IPDDLLNENKEKIITIPMTKKIDRSLNLANSVSIVLYEALRQ 147 >gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] Length = 154 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 + P++ N G R +L LV P + + V+D Sbjct: 4 FVFHTPEIPGNTGNAIRLAACTG-ARLHLVEPLGFNFDHANLRRAGLDYHDLAVMDVHPT 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+ D ++A T + ++ + VL +FGRE GL Sbjct: 63 VDALWDALGD-ARVFAFT--SHSSTRHTDVAYRDGDVL------------LFGRESTGLP 107 Query: 134 NEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ P SLN++ + + ++E Sbjct: 108 EKVLTDEHVHDRVRIPMLPGRRSLNLANSASIALYEAWRQ 147 >gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria AMMD] Length = 170 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 +ILV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 18 VILVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 75 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 76 DWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 120 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + P+ P SLN+S V ++V+E + Sbjct: 121 GLPADVLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 164 >gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 ++L++PQ+ N G + R N ++L LV + G+ A D +D V+ Sbjct: 7 VVLIEPQIPYNTGNIGRLCVATN-SKLHLVG-KIGFSLNDKYLKRAGLDYWSFLDY-EVY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N +E + RN + + A L + + +IFG E +G+ + Sbjct: 64 KNFEEFVE------------RNKNGRFIFVESPAFKLYTEVSYQEGDYLIFGSEDYGIPS 111 Query: 135 EEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I ++ P+ SLN+S +V ++V+E + Sbjct: 112 EIIEK--YWENSVTIPMFGPVRSLNLSSSVAVVVYEALRQ 149 >gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116] Length = 159 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + TT + ++ + G ++FG E Sbjct: 63 YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + I I P+ P SLN+S AV ++ +E Sbjct: 108 TRGLPADVIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium carboxidivorans P7] Length = 155 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 29/171 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70 I+L P++ +N G +AR LT L L+ P EK + D ++ Sbjct: 5 IVLFQPEIPQNTGNIARTCV---LTNCKLHLIKPLGFSLDEKHLKRA-GLDYWKYLDLEV 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L+E D F ++TT + +NF + KE I+FGRE Sbjct: 61 YESYEELREKYKDSTFYFSTT--HGDNFYHEVEFKE-------------GDFIVFGRESC 105 Query: 131 GLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + S+ I P+ N SLN+S V ++ +E + + K Sbjct: 106 GLP-DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 155 >gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7] Length = 159 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 29/171 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70 I+L P++ +N G +AR LT L L+ P EK + D ++ Sbjct: 9 IVLFQPEIPQNTGNIARTCV---LTNCKLHLIKPLGFSLDEKHLKRA-GLDYWKYLDLEV 64 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L+E D F ++TT + +NF + KE I+FGRE Sbjct: 65 YESYEELREKYKDSTFYFSTT--HGDNFYHEVEFKE-------------GDFIVFGRESC 109 Query: 131 GLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + S+ I P+ N SLN+S V ++ +E + + K Sbjct: 110 GLP-DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 159 >gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 152 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 24/168 (14%) Query: 17 IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L+ P++ N G + R + N T L L+ P EK + + ++++ Sbjct: 3 IVLLYPEIPYNTGNIGRSSVLTN---TTLHLIKPLGFSLDEKQLKRAGLDYWHLVDLKIW 59 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++ I D YATT + I +N ++FG E G Sbjct: 60 ESYEDFINGNPDAVIYYATTKTKQRYT---------------DIKFKKNDFVMFGPESRG 104 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + E + ++ I+ P+ + SLN+S + ++++E + + + +K Sbjct: 105 IPEEILNKNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFNFDK 152 >gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408] Length = 184 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPVDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + R K + E + + +FGRE GL Sbjct: 79 ESLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase in gldA 3'region; AltName: Full=ORF3 gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli; ORF3 [Geobacillus stearothermophilus] Length = 157 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P++ N G +AR N T L L+ P +K + + ++ + Sbjct: 5 VVLFQPEIPANTGNIARTCAATN-TALHLIRPLGFSTDDKMLRRA--GLDYWEFVNIHYY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L + F Y T K + + E + IFGRE G Sbjct: 62 DSLDHFFQQNQNGDFYYIT-----KFGKRYYTSYDFSDPSKE-------IFFIFGRETTG 109 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E +A + + + P+ +LN+S ++V+E + Sbjct: 110 LPKELLAENEDRCLRIPMTENVRALNLSNTAAILVYEALRQQ 151 >gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM 17093] Length = 221 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L + N+ + R + + +NP G P+ S+SA+ + RV + Sbjct: 23 VLAENVHKPHNLSAMLRTCDAVGIGVVHALNPTGGVPTFNETSASAHKWVEL---RVHGS 79 Query: 77 LKEA---IADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L EA + + + A + R + + + ++FG E+ G+ Sbjct: 80 LAEARAALGGVQLLAAHFSGRALDYREVDYT---------------RPTCVLFGNEKHGV 124 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + E ++A I P+ + SLN+S A ++++E + + + + + Sbjct: 125 SREAADAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGLYDAPQLSE 177 >gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 167 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ N G +AR N T L L+ P +K + ++ Sbjct: 4 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132 +L A + F+ A + + + A + + + + IFG+E GL Sbjct: 61 KDLA---AFMDFLGA---------RPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL 108 Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S L+++E + Sbjct: 109 PESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQ 150 >gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207] gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207] Length = 154 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N +L L+ P +K + S++V ++ Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGF-RLHLIEPLGFDLDDKKLRRAGLDYREFQSLKVHAS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135 L EA R K + A V + ++FG E GL + Sbjct: 63 L-EAY-----------RQSQQPKKIYALSTKGTVCYSSARFEEGDALLFGPETRGLPADV 110 Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ P+ SLN+S V ++V+E Sbjct: 111 RDGLGTEQVLRLPMQKESRSLNLSNTVSIIVYEAWRQ 147 >gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3] gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3] Length = 156 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 22/165 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P + +N G + R +L LV P +K + D V V Sbjct: 3 VVLYHPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L E + + I+ + + + V P + +FG E GL Sbjct: 60 DSLDEVLFGVDEDKIFCLSTKGAQYYGDVALPMDG--------------VYVFGSESKGL 105 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + N P+ P SLN++ V ++++E + + S+ Sbjct: 106 PEEVLKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEAVRQNNQST 150 >gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis] gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis] Length = 234 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 20/176 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++LV PQ+ N G +AR + L LV P + V+V Sbjct: 55 VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPLGFQVDSTKLKRA--GLDYWPYVVVKVH 111 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E D R + K +LA + + + +IFG E GL Sbjct: 112 ESWTE-FQDYF-------RQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPP 163 Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 E + I P+ + LN+S +V + ++E K E Sbjct: 164 EALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSES 219 >gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 153 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N QL L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 S+L+ EA+ TT ++ + P + +FG E G Sbjct: 61 SDLQSCLEALGHPRLFAFTTKGSQPFHEIAYQPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L EE+ + + P+ SLN+S V + V+E Sbjct: 106 LP-EEVRNALPPQQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147 >gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 165 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N T+L L+ P +EKA + D + V Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRA--GMDYWDQLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ E ATT A + + + I+FG+E G Sbjct: 61 IDYNDFLEKNPGAKIYMATT---------------KAPNVYTDVKYEPDCYIMFGKESAG 105 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + I P+ SLN+ +V ++++E + Sbjct: 106 IPEEILVH-HKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146 >gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus oralis Uo5] gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus oralis Uo5] Length = 167 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ ++ + +++ + + S ++ +FGRE GL Sbjct: 62 DSLEDFMSQM-----------KGKLYLISKFAEKVYSEANLASSEDHYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. HL-EbGR7] Length = 248 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 22/174 (12%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L P++ +L N+G R + +V PRD + AR ++ Sbjct: 90 PNLVGRVASPLLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PRDRAAGLTPVARKVAS 147 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A V+ V+V + L + +I T+ A + Sbjct: 148 GAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSG--------------DAPQTLYQADLKG 193 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + I+ G E G+ + +++ P+ SLN+S A + ++E + + Sbjct: 194 PIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFEVVRQRL 247 >gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus capsulatus str. Bath] Length = 159 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 25/174 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++L +P++ N G V R N L L+ P + + + V Sbjct: 4 VVLYEPEIPPNTGNVIRLCANTG-ACLHLIEPLGFEMDDARLRRA--GLDYREWAEVARH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+A I+A T R V + + +FG E G Sbjct: 61 RDWEGFVGAVAP-ERIFALTTR--------------GEVSHADVTYRPGDAFLFGPESRG 105 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 L +A I P+ P SLN+S AV ++ +E + + E+ Sbjct: 106 LPAALLARFETGRRIRLPMRPGSRSLNLSNAVAVVCFEAWRQCGFAGAASASER 159 >gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC 9905] Length = 160 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ S E L G ++FG Sbjct: 55 --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPTHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e] gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 1/2a F6854] gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland 1988] gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL R2-561] gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S] gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161] gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818] gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL J2-003] gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e] gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes str. 1/2a F6854] gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818] Length = 169 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + + ++ +FG+E Sbjct: 61 YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDTNKDYFFVFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP18-BS74] gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP18-BS74] Length = 167 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133 +L++ I ++ K L K A V +E + + ++ +FGRE GL Sbjct: 62 ESLEDVI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 109 Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3] Length = 159 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L +P++ N G VAR T+L L+ P + + +VR+F Sbjct: 2 RIVLFEPEIPPNTGNVARLCAATG-TELHLIEPLGFKLENRYLKRA--GLDYWPNVRLF- 57 Query: 76 NLKE--AIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + A A T+A++R+ V + +IFG Sbjct: 58 TWPDWRAFAQRPGRPATERWVMTSAKSRHGSAPV-----------QHFAFQPEDSLIFGP 106 Query: 128 ERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 E GL E + S + P+ SLN+S + ++++ + S Sbjct: 107 ETRGLPPEMLDASPHHVRIPMREGGVRSLNLSTSAGIVLYMALAAS 152 >gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis MR-1] Length = 154 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I L +P++ N G + R N +QL L+ P G+ E+ + A D + +V Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPL-GFDFEEKKLRRAGLDYADLTNVTRHK 61 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N A+A + TT +R + + ++ ++FG E GL Sbjct: 62 NFDAFLKAMAGKRIMACTTKGSRPHS---------------ELSFAKDDVLLFGPETRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + + P+ SLN+S AV ++ +E Sbjct: 107 PMSIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 225 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R ++Q+ + S K+ S++A V+ + +++AI+ Sbjct: 16 PHNISAVIRTADAVGISQIHAI---WCQNSTKSLSAAAAGSNHWVKVKTHATIEKAISTC 72 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + K + ++ I Q II G+ER G++ + +AL++ I Sbjct: 73 K-AAGMQILAAHLTKQAIDFRQ--------IDYTQPTCIILGQERTGISKQALALADHNI 123 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 P+ + SLN+S A L+++E ++ N + + + + + Sbjct: 124 HIPMMGMVQSLNVSVASALILYEAQRQRQNANMYNSLF-SQLSEEEQQEWLFE 175 >gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA] Length = 178 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + NIG V R F + + L P + ++ A+ ++ R Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130 N +A+ +LH + +VLA ++ L +++ + + I+ G E Sbjct: 83 KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + I P SLN+S ++VWE Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169 >gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 178 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + NIG V R F + + L P + ++ A+ ++ R Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130 N +A+ +LH + +VLA ++ L +++ + + I+ G E Sbjct: 83 KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + I P SLN+S ++VWE Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169 >gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct] Length = 154 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPY 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + + +FG E GL Sbjct: 63 LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + + P+ SLN+S V + V+E Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium D344SRF] gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium D344SRF] Length = 168 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 SNL+ + T NR +++ + +E G+ +FG+E GL Sbjct: 62 SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 112 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYESLRQQ 151 >gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC 35469] gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469] Length = 157 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ + E L G ++FG Sbjct: 55 --------------TAVTRHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDSDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL++ + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLSSSILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae Sd197] gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185] gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617] gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185] gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617] Length = 157 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ S E L G ++FG Sbjct: 55 --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824] gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824] gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018] Length = 160 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 31/169 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+L P++ +N G +AR N ++L L+ P EK + Sbjct: 6 ENLNIVLFQPEIPQNTGNIARTCVLTN---SKLHLIKPLGFSLDEKHLRRA--GLDYWKD 60 Query: 71 VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + + L+E D F ++TT + + Q IIF Sbjct: 61 LDLSLYDSYDELREKYKDSTFYFSTT---------------HGNGFYDDVKFNQGDFIIF 105 Query: 126 GRERWGLTNEEIALS--NAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171 GRE GL +EI S + I P+ SLN+S V ++ +E + Sbjct: 106 GRESCGLP-DEIRESDPDRCIRVPMVKTSTRSLNLSNTVAIVAYEAIRQ 153 >gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492] gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20] gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 246 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPARNSVSVNADAMKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R +LKE + + H + AT E + Sbjct: 148 LHTLPVCREH-SLKETLQFLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae 1012] gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae 1012] gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74] Length = 160 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ S E L G ++FG Sbjct: 55 --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 156 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 27/165 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV P++ N G V R N + L L+ P +K + + ++ Sbjct: 4 VVLVHPEIPPNTGNVIRLCANTGAS-LHLIRPLGFSLEDKHMKRA--GLDYWEYATLKIH 60 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129 N + +A H ++A T + F + P + IFG E Sbjct: 61 DNWEAFLAAEHPNPERMFAMTTKGSTVFSQLKFIPGDW---------------FIFGAEG 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL ++ + I P+ P SLN+S AV + V+E Sbjct: 106 SGLPDDIRSAFSAQNRIRLPMRPDNRSLNLSNAVAVTVFEAWRQQ 150 >gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. WH 7805] gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein [Synechococcus sp. WH 7805] Length = 165 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 34/180 (18%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MT P + L +P++ N G +AR F+L L L+ P G+ + + Sbjct: 1 MTHLKPS------PLSVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPL-GFSIDDRQLK 52 Query: 61 SANADCVID-SVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A D ++ V ++ K ++A + + R+ + L + F Sbjct: 53 RAGLDYWPHVNLSVHTDFKAFKTSLAKPSRVIGCSRRD-------------GVALQDFSF 99 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168 +V ++FGRE GL + I++ P+ SLN+S A + ++ Sbjct: 100 EQGDV-LLFGREDTGLPEPVRDQCDDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158 >gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM 18228] Length = 250 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 23/158 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN---LKEA 80 N G +AR + + + + + A +SA A + R + + LKE Sbjct: 110 NFGAIARTCECAGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKE- 168 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + AT E + II G E G+ E +AL Sbjct: 169 -SGFKIVAAT---------------EKGDYDYTKADYQGPTCIIMGAEDTGVPYEHLALC 212 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I P+ SLN+S A ++++E ++ + E+ Sbjct: 213 DEWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFAPEE 250 >gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 218 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 74 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 177 >gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae COH1] gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae 2603V/R] gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus agalactiae COH1] Length = 182 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N L ++ P +K + D + V + Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E + +++ + +E Q+ +FGRE GL Sbjct: 77 DGLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165 >gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405] gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678] gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160] gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1] Length = 184 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R K + E + + +FGRE GL Sbjct: 79 ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum CMR15] Length = 156 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N QL L+ P G+P E AR A D ++RV + Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 + + + D ++A T R F + P + +FG E Sbjct: 62 SWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E A + I P+ P SLN+S V ++V+E Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149 >gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619] gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida W619] Length = 153 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 23/166 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + +L ++A T + + F V +FG E GL Sbjct: 61 ESLARCLENLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E + + + P+ P SLN+S V + V+E + Sbjct: 107 PAEVLDSLPAEQRLRLPMMPGCRSLNLSNTVAVTVYEAWRQQGFAG 152 >gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 154 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N + L ++ P EK + + +V+V+ N Sbjct: 4 IVLFEPEIPPNTGNIIRLCVNTK-SSLHIIKPMGFTLDEKPVRRAGLDYHDMANVKVYDN 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E A L H +A T ++ +++ + +G IFG E GL Sbjct: 63 YEECYAQLKNHRHFAVTTKSDSHYHHF------------KYEAGD--VFIFGPETRGLPL 108 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + A I P+ S+N+S V ++++E Sbjct: 109 ERLNDKRNQANIRVPMVASNRSMNLSNTVAIVIFEAWRQ 147 >gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240355] Length = 261 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A + Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLRAGMGAHFL---SG 167 Query: 73 VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R L E +FG E Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae 342] gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola At-22] gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55] gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae 342] gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola At-22] gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55] Length = 157 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N + L ++ P +K + +V+ ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A +A+ + F L K G ++FG E GL Sbjct: 63 YAAFLA--------SAQPQRLF--ALTTKGTPAHSAVSYQDGD--FLMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18] gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis 961-5945] gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136] Length = 261 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A + Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167 Query: 73 VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R L E +FG E Sbjct: 168 IYPQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 22/192 (11%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L P ++LV + N+G R F + + + R S ++ Sbjct: 86 EDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASG 145 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + V + L+E +I T A A + + + Sbjct: 146 AVDTVPFFAVTNLARTLRELKEMGLWIVGTAA--------------DAPDTLDSVTLTRP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + G E G+ + ++S P++ SLN+S + + ++E + + Sbjct: 192 LAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQHSQRTGSGL 251 Query: 181 KEQNTPATKGEL 192 N PA K + Sbjct: 252 ---NVPAPKNAV 260 >gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01] gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25] gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01] gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25] Length = 159 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62 Query: 77 LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + TT + ++ + +G ++FG E Sbjct: 63 YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAQYQAGD--VLMFGPE 107 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I I P+ P SLN+S AV ++ +E Sbjct: 108 TRGLPAEIIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 178 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%) Query: 9 QNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + + K PVI+++D N IG V R F + ++ L P ++ ++ A Sbjct: 18 KETPKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATES 77 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFG 126 ++ E + D+ + + R R + E A+ L G +IFG Sbjct: 78 VEW--------EYVQDITTLVE-SLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFG 128 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E G+ ++L I P SLNI+ + +++W Sbjct: 129 NEVEGVQQSVVSLCQRAIEIPQYGTKHSLNIAVSAGILLW 168 >gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66] gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66] Length = 184 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + R K + E + + +FGRE GL Sbjct: 79 ESLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1] Length = 153 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPY 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + + +FG E GL Sbjct: 63 LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E++ + + + P+ SLN+S V + V+E Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis SK14] gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis SK14] Length = 156 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G +AR T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCA--GTFTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNITY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWG 131 +++E + L K ++ FS +N IFGRE G Sbjct: 61 HESIEEFF------------DSTKGNYYLLTKFGKQTYSDFDFSNTLENHYFIFGRETTG 108 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + ++ + P++ SLN+S L+++E + Sbjct: 109 LPDWIKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150 >gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ V R L Q+ V WP+E+ R+ S A A ++ V+ ++ EA+ Sbjct: 30 PNNVSAVIRTADAVGLHQIHAV-----WPNEQMRTLSHTSAGARNWVE-VQTHNSTLEAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + L + V E AI I Q IIFG E+ G++ + + L++ Sbjct: 84 SHL--------KETGMQILVTNLSEHAIDFRA-IDYTQPTAIIFGSEKSGISPQALQLAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 I P+ + SLN+S A L+++E + + ++ Sbjct: 135 HDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYDREQS 176 >gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM 43017] gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM 43017] Length = 158 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+ P++ N G R N +L L+ P ++ + + ++V Sbjct: 3 RIVFFHPEIPGNTGNAIRLAANTGC-ELHLIEPLGFSLEDRYLRRAGLDYHDLAHIQVHR 61 Query: 76 NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L +A+ +H TT +R + + + ++FG E GL Sbjct: 62 DLDAAWQALDPVHVYAFTTQAHRRHT---------------DVDYAEGDVLLFGPESVGL 106 Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E +A + P+ P SLN++ + V+E Sbjct: 107 PDEVLADERITDQVRLPMLPTSRSLNLTNTAAIAVYEAWRQ 147 >gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides T2-87] Length = 173 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 75/189 (39%), Gaps = 24/189 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75 ++L +P++ +N G + R ++L L+ P G+ ++ + D + D+ + + Sbjct: 4 VVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPL-GFSLDEKHLRRSGMDYIKDADIHIHK 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N +E + + + + + A + + ++V ++ G+E G+ + Sbjct: 62 NWEEFVKE---------NPSDKYYFMTRYGHKAPSEFDFSDTSKDVYLVLGKESTGVDKK 112 Query: 136 EI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 + ++ + P+ SLN+S ++V+E + AT +L Sbjct: 113 ILKDHLDSCMRLPMVASARSLNLSNCAAIIVYEVLRQQNYPG---------LATSEQLKG 163 Query: 195 FLDYLEISL 203 D+ L Sbjct: 164 --DHWLEDL 170 >gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC 17982] Length = 246 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S +++L + N+G + R F + V S K SSA + I Sbjct: 80 EPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHI 139 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V V + +A A +H + T+ + S L + V++ R Q+ + Sbjct: 140 P-VCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ----VVSARSRLSQSHAWV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 FG E GL+ +E+ L + ++S P+ SLN++ A ++ Sbjct: 195 FGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLF 236 >gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 151 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + AP + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFAPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + S+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 206 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ + A SV+ + EA++ Sbjct: 7 PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMASTAAGSNSWVSVKTHQTIGEAVS 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R A+ E I + I+ G+E+ G+T E + L++ Sbjct: 62 HL--------KGRGMQILATNLSAKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSMLPEDEQQRLLF 165 >gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7] gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7] Length = 154 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N +QL L+ P EK + + +V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ + TT +R + + ++ ++FG E GL Sbjct: 63 FDAFLEAMTGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107 Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P+ SLN+S AV ++ +E Sbjct: 108 MPIIESIPTEQRL-RIPMAATSRSLNLSNAVAIISYEAWRQ 147 >gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331] Length = 160 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 23/171 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G + R N QL L+ P + + D +V Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPLGFPLDDSKMRRA--GLDYHDYATMQVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + +A + R+ ++ + + + + G +FG E Sbjct: 61 ADWNDFVA--------SMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDI--FVFGSETR 110 Query: 131 GLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E A S I P+ P SLN+S V ++V+E + S Sbjct: 111 GLDPALRESFAPSQRI-RLPMRPDNRSLNLSNTVAVVVYEAWRQNGYSGGA 160 >gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta thermophila DSM 6578] Length = 154 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 20/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++L +P++ +N G +AR L L+ P G+ E A D + +R+ S Sbjct: 5 VVLHEPEIPQNTGNIARTCAATG-AVLHLIEPL-GFSLEDRYLRRAGLDYWPMVDLRLHS 62 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++ + R ++ + P E ++FG+E GL Sbjct: 63 SWDAFLEEERPSSLFLLSTRGTRSYHTCSFPDE--------------TYLVFGKETAGLP 108 Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + ++ P+ SLN+S AV ++V+E + Sbjct: 109 PRILEAFPDRVVRIPMRAGARSLNLSNAVAILVYEALR 146 >gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae NTUH-K2044] gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS 92-3] gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS 92-3] Length = 157 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N + L ++ P +K + +V+ ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A +A+ + F L K G ++FG E GL Sbjct: 63 YAAFVA--------SAQPQRLF--ALTTKGTPAHSAVSYQDGD--FLMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae C87] gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae C87] Length = 156 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G +AR T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCA--GTFTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNITY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++E N+ + + + + +N IFGRE GL Sbjct: 61 HESIEEFFD----------STEGNYYLLTKFGKQTYSDFDFTNTIENHYFIFGRETTGLP 110 Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P++ SLN+S L+++E + Sbjct: 111 DWVKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150 >gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073] gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110] gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89] gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536] gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC O1] gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B] gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SMS-3-5] gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11] gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6 str. E2348/69] gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88] gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a] gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39] gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli UMN026] gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972] gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952] gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412] gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354] gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302] gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 198-1] gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 21-1] gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 116-1] gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 175-1] gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 200-1] gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 45-1] gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 69-1] gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 196-1] gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 185-1] gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 146-1] gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101] gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736] gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W] gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75] gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736] gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605] gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718] gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA206] gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA143] gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299] gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli CFT073] gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr. MG1655] gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110] gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89] gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli 536] gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1] gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B] gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli SMS-3-5] gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11] gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69] gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88] gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39] gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a] gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026] gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli LF82] gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43] gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972] gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952] gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1] gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15] gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412] gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354] gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli IHE3034] gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302] gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 196-1] gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 185-1] gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 200-1] gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 175-1] gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 198-1] gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 69-1] gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 45-1] gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 116-1] gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 21-1] gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 146-1] gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101] gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W] gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972] gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146] gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407] gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75] gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1 str. NRG 857C] gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W] gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1] gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 110-3] gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 153-1] gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 16-3] gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431] gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli WV_060327] gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1] gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11] gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252] gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263] gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 57-2] gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 60-1] gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86] gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736] gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605] gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718] gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA206] gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA143] gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299] gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 157 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602] gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602] Length = 157 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ N G + R N QL L+ P GW ++ R + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFGWDDKRLRRA---GLDYHEFAHIKH 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N + + N + + A + + N ++FG E GL Sbjct: 60 HANYDAFL------------SSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 108 ASILDNLPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147 >gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str. F0295] Length = 175 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + ++K P +++L + + N+G V R+ F + + L PS + ++ A+ Sbjct: 8 EFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 67 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 + + F+ +AI +LH K + A + + + + G + Sbjct: 68 DSVTW-KYFAQTTDAIDELH---------AKGTKVFAVEQVAGSTMLQNLDTEVGTRYAV 117 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E G+ + L + + P SLN+S A ++VWE + Sbjct: 118 VLGNEVKGVQQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAK 164 >gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 151 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + P + +FG E G Sbjct: 61 ADLATCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + S+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp. mediasiatica FSC147] Length = 155 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 24/158 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I L +P++ NIG + R N +L L+ P +K + + + Sbjct: 2 ISIALYEPEIPPNIGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58 Query: 73 VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ N E D I+A T + + + V + ++FG E Sbjct: 59 IYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPET 103 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + L + P++ SLN+S +V ++++ Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K A G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTAAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens D str. JGS1721] gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium perfringens D str. JGS1721] Length = 153 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 23/160 (14%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ +N G +AR N ++L ++ P +K + + Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ + + K + A + + + I+FGRE G+ Sbjct: 60 IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107 Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E + ++ I P+ N SLN+S V ++ +E + Sbjct: 108 P-ENVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146 >gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 257 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ ++IL + N+G + R + ++ + S +SA A Sbjct: 101 AAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADAVIMIEGKGAPISATVHKASAGA-- 158 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +RV +K + L + R S++A A + I + ++ G Sbjct: 159 -LSHMRVCK-VKSVVKALDLL-------RERGFSIVAADMEAEHNHTDIDWKRPTVLVMG 209 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL +E + I+ P+ SLN+S A +M++E M + Sbjct: 210 AEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQRL 256 >gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv] gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97] gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra] gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11] gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra] gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435] gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C] gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem] gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207] gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506] gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001] gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002] gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003] gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004] gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005] gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006] gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008] gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007] gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009] gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010] gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011] gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012] gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475] gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C] gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem] gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra] gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11] gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435] gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46] gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85] gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17] gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92] gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054] gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503] gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001] gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002] gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003] gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004] gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005] gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006] gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007] gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008] gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009] gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010] gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011] gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012] gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A] gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207] Length = 154 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P++ N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 EA++ ++A TA A L + ++FG E GL + Sbjct: 65 HAWEALSP-ARVFAFTA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--D 107 Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E L++ I+ P+ SLN+S A + V+E + Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153 >gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855] gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 178 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 14/157 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + NIG V R F + + L P + ++ A+ ++ R Sbjct: 24 PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130 N +A+ +LH + VLA ++ L +++ + + I+ G E Sbjct: 83 KKNTLDAVQELH----------DQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ E + + I P SLN+S ++VWE Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169 >gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ3810] gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ4037] gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ3810] gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AQ4037] gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329] Length = 159 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + L + N K ++ + +G ++FG E GL E Sbjct: 63 YQAFLEYLDK-----EKQGNYRLFACTTKTTGHHVDAQYQAGD--VLMFGPETRGLPAEI 115 Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I I P+ P SLN+S AV ++ +E Sbjct: 116 IEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 151 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + P + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + S+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLNSDHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT 12056] Length = 246 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R NLK+ + + H + AT E + Sbjct: 148 LHTLPVCR-EQNLKDTLQYLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697] gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 246 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R NLK+ + + H + AT E + Sbjct: 148 LHTLPVCR-EQNLKDTLQYLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC 43183] Length = 246 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R NLK+ + + H + AT E + Sbjct: 148 LHTLPVCR-EQNLKDTLQFLKSSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus Ueda107] Length = 154 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P EK+ + + VR+ ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLAANTGC-QLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIHAS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135 + HF+ + + A + ++FG E GL + Sbjct: 63 WE------HFLV------QEQPTRLFALSTKGSQCHSDAQFAAGDYLLFGPESRGLPADI 110 Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +N ++ P+ S+N+S AV +MV+E Sbjct: 111 RESLPANQVLRIPMAANSRSMNLSNAVAVMVYEAWRQ 147 >gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a str. 301] gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a str. 2457T] gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046] gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227] gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str. 8401] gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC 3083-94] gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 84-1] gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 124-1] gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T] gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227] gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC 3083-94] gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri 2002017] gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 84-1] gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 124-1] gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str. 2457T] gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 85-1] gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC 74-1112] gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC 796-83] gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G] gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671] gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70] gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71] gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71] gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6] gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218] gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272] gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304] gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227] Length = 157 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 223 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 25/185 (13%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP + + + + +L++ N+ + R + + VNP G P+ Sbjct: 1 MTPERYRKLRAVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVL 111 + ++ +RV ++ A+ L +YA + + Sbjct: 60 --YNETSGGSEKWVYLRVHPDIATAVQHLKERGFLVYAAHLSDEAVDYRAVD-------- 109 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + V ++ G E+WG++ E AL++ I P+ + SLN+S A ++++E Sbjct: 110 -----YTRPVAVLLGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 164 Query: 172 SIVSS 176 + Sbjct: 165 RQAAG 169 >gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 166 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ +N G +AR T L LV+P SEK + + ++ ++N Sbjct: 5 IVLFEPEIPQNTGNIARTCAAVGAT-LHLVHPLGFSLSEKHLRRAGLDYWPLLTLCEYAN 63 Query: 77 LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + E + + + TT + ++++ + P+E ++FG+E G+ Sbjct: 64 VDEFFQKKSGENLYFFTT-KAKHSYTELTYPEE--------------TYLVFGKESAGIP 108 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + P+ SLN+S +V + +E + + S Sbjct: 109 ESILVEHQKTCVRIPMRSQARSLNLSNSVAIATYEYLRQAQFSD 152 >gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380] gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380] Length = 172 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 6/160 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + A + N + + A + + N ++FG E GL Sbjct: 63 YQAFLDSENLDGAQSVSNESTGTESARLFALTTKGTPAHSAVSYQINDYLLFGPETRGLP 122 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 123 PNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 162 >gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 247 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 21/178 (11%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 T + SAK +++L N+G V R+ + +V P+D + R Sbjct: 86 TDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAAGV-DAVIV-PKDKSASLNATVRK 143 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A VI ++V + L E ++ T R + Sbjct: 144 VACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEARQSVFDCDM------------- 190 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V ++ G E G+ + +I P+ SLN+S A + ++E + Sbjct: 191 -AGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEIVRQRGA 247 >gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 247 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L NS P V++L N+G R+ + + L R + + +++ A Sbjct: 86 PALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGVQIVILPRDRSAPLNATVKKAASGA 145 Query: 65 DCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 I +RV + L+ + + H I T K+V + + Sbjct: 146 AENIPVIRVTNLARTLR-VLKEYHLLIIGTAG---EAKKTVYEARMTG-----------S 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + +I P+ SLN+S A + ++E + Sbjct: 191 MALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAVRQR 242 >gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1] gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1] Length = 153 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + L ++A T + + F V +FG E GL Sbjct: 61 ESLAGCLESLGNPRLFAFTTKGSHPFHEVAF--------------QPGDAFLFGPESRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ P SLN+S V + V+E Sbjct: 107 PAEVLDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147 >gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM 22836] Length = 175 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 68/164 (41%), Gaps = 10/164 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +I+L + + NIG V R F + + L P+ + ++ A+ + Sbjct: 19 SEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAENSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 +S+ +A+ +L + + + +I+L+E ++ S + +I G Sbjct: 79 AWA-YYSDTDQAVEEL--------KKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ + ++ + + P SLN+S A +++WE + Sbjct: 130 EVKGVQQDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQ 173 >gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 235 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 24/176 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + +L++ + IL + N G +AR+ F + + N R ++ S Sbjct: 78 LEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDAIIFPNRRAATVNDTVVKS 137 Query: 61 SANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 SA A ID +V LKEA +IYAT + E Sbjct: 138 SAGAIYDIDVCKVSNISQSIDKLKEA---GFWIYAT--------------DLEGEDIREC 180 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FSG ++ G E G++ + S+ I+ P F SLN S A ++++E Sbjct: 181 DFSG-KAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235 >gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345] gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana ATCC 700345] Length = 153 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R + N +L L+ P +K + + +V N Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + EA+A + TT +R S L K Q+ ++FG E GL Sbjct: 63 FEAFLEAMAGKRIMACTTKGSR--PHSELTFK-------------QDDVLLFGPESRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + + P+ SLN+S AV ++ +E Sbjct: 108 ADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147 >gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes P 36-108] Length = 246 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAVKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R NLKE + + H + AT E + Sbjct: 148 LHTLPVCR-EQNLKETLQFLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEAVKQR 244 >gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida KT2440] Length = 157 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + + Sbjct: 8 VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 64 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + L ++A T + + F V +FG E GL Sbjct: 65 ESLAGCLESLGNPRLFAFTTKGSHPFHEVAF--------------QPGDAFLFGPESRGL 110 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ P SLN+S V + V+E Sbjct: 111 PAEVLDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 151 >gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 184 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + R K + E + + +FGRE GL Sbjct: 79 ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENYAAEDSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S +V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3] gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3] Length = 193 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R + N QL L+ P +K + D V Sbjct: 44 IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLANVSHH 100 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + +A+ + TT +R + +E F +V ++FG E G Sbjct: 101 KNFESFLKAMQGKRIMACTTKGSRPH--------------SELTFQQDDV-LLFGPESRG 145 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I + + P+ SLN+S AV ++ +E Sbjct: 146 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 187 >gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270] gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270] Length = 159 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 30/165 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLK 78 +P++ N G + R + T+L L+ P +K S D ++ V+ N++ Sbjct: 2 EPEIPFNTGAIGRTCVATD-TKLHLIKPLGFSLDDKMVKRS--GLDYWDKLKLFVYENIE 58 Query: 79 EAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + ++TT R K +P + I+FG+E G+ E Sbjct: 59 DFYEKNPNANIYFSTTKAKRTYDKVEYSPNDY---------------IMFGKESKGIPEE 103 Query: 136 EI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + P+ SLN+S +V ++++E + S Sbjct: 104 ILVKNEEHC---VRIPMWGEIRSLNLSNSVSIVLYEALRQQDFSE 145 >gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC BAA-895] gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895] Length = 157 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPATI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 156 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 16/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P + N G +A + T L L+ P E+ + +SV + + Sbjct: 5 VVLYQPDIPANTGNIALTCAATD-TSLHLIRPLGFSTDEEMIKRA--GFDFWNSVNITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + + +N+ F + E A + + + +FG+E GL Sbjct: 62 DSMDDFFS----------KNQGEFYYIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPK 111 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S ++V+E + Sbjct: 112 DLLEENKDHFLRIPMNDNVRSLNLSSTAAILVYEALRQQ 150 >gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 180 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 74 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 +L++ I+ + + A + + + ++ +FGRE GL Sbjct: 75 ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 121 Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 122 P-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142] Length = 292 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 56/167 (33%), Gaps = 11/167 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 NS + ++I N+G + R L + R + SA A Sbjct: 134 NSDEPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFP 193 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV NL A+ L F E L + F G +G++ G E Sbjct: 194 VARVV-NLSRALETL---------KAEGFWIYGTVAEGGKRLQDFDFRGA-IGLVIGSEG 242 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + +IS P+ PSLN S A + ++E Sbjct: 243 SGLSLLTQRCCDELISIPLEGKTPSLNASVAAAINLYEIYRQRWSEK 289 >gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP6-BS73] gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP23-BS72] gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04] gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA] gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A] gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP6-BS73] gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP23-BS72] gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04] gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA] Length = 167 Score = 72.4 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 +L++ I+ + + A + + + ++ +FGRE GL Sbjct: 62 ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 108 Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 109 P-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 184 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + +++ + E + + +FGRE GL Sbjct: 79 ESLDDFMEQMD-----------GKLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLELVHEYEA 180 >gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP 102972] Length = 228 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 18/167 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R L ++ V WP+E+ R+ SA A ++ V ++ +AI Sbjct: 30 PNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSAGARNWVE-VETHNSTLDAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T + + V + A+ + I Q II G E+ G++ + +AL++ Sbjct: 84 K--------TLKAQGMQVLVTNLSDDAVDFRD-IDYTQPTAIIVGSEKVGISKQALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 I P+ + SLN+S A L+++E + E PA Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYERDESPLPAD 181 >gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49] Length = 184 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGL 132 +L + + + + + A + E + + +FGRE GL Sbjct: 79 ESLDDFMEQMD-------------GHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGL 125 Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 126 P-EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 176 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 22/168 (13%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-- 66 + S +I+L + + NIG V R F + ++ L P + ++ A Sbjct: 19 EASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSV 78 Query: 67 VIDSVR----VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 V + V V +LKE T A + E A+ LN+ ++ + Sbjct: 79 VWEYVENTMDVIQSLKEN------KVTTIAIEQA---------ENAVFLNDFKVSKDEKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +IFG E G+ E ++ + ++ P SLNIS + ++VW+ Sbjct: 124 ALIFGNEVKGVAQEVVSSCDTVVEIPQYGTKHSLNISVSAGVVVWDLW 171 >gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 153 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL P++ N G + R N + L L+ P +K + SVR + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ EA+ TT +R + + +FG E GL Sbjct: 63 LQDCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107 Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EE+ + + P+ SLN+S V + V+E Sbjct: 108 -EEVRNALPAERRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147 >gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae SCF1] gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae SCF1] Length = 157 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + A + L K G ++FG E GL Sbjct: 54 FTAVVRHHDYA-AFADAEKPQRLFALTTKGTPAHSAVSYRDGDY--LMFGPETRGLPASI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9] gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9] gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9] Length = 157 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens QYMF] gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens QYMF] Length = 165 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 19/164 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++P++ +N G +AR T L L+ P EK + + + + Sbjct: 13 VVLLEPEIPQNTGNIARTCVATGAT-LHLIGPMGFSIDEKQVKRAGLDYWELLDLNYYDR 71 Query: 77 LKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +Y T + + N V P++ + I+FG+E G+ Sbjct: 72 YADFLEKNKHPKVYCATTKAQKNHSEVAYPQD-------------DTYIMFGKETAGIPK 118 Query: 135 EEI-ALSNAIISFPVN--PLFPSLNISQAVLLMVWECMENSIVS 175 E + I P+ SLN+S AV ++V+E + S Sbjct: 119 EILKDHEETCIRIPMVDIERARSLNLSNAVSIVVYEVLRQWGYS 162 >gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 260 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 24/177 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 ++LV PQ+ N G +AR + L LV P G+ + AR A D V+ + Sbjct: 81 VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVRAHS 138 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +E R + K ++A + ++ ++FG E GL Sbjct: 139 SWAEFQEYF-----------RQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGL 187 Query: 133 TNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E ++ + P+ + LN+S +V + ++E + E Sbjct: 188 PPEALSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPE 244 >gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 200 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 25/185 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M A L +S ++LV+P++ N G + R N T L LV P G+P + A+ Sbjct: 34 MPTPATSLTHSMFN--VVLVEPEIPPNTGNIIRLCANTGAT-LHLVEPL-GFPLDDAKMR 89 Query: 61 SANADCVI-DSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A D +RV + +A D ++A T R + F +R Sbjct: 90 RAGLDYHEYAQMRVHQDWSTLLATQQPDPARMFAFTTRGSSMF-------------GDRA 136 Query: 116 FSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 F + +FG E GL + + + + P+ SLN+S V ++V+E Sbjct: 137 FQPGDW-FVFGAETRGLCDTVLQHFAVDQRVRLPMRAGNRSLNLSNTVAVVVFEAWRQHG 195 Query: 174 VSSEK 178 Sbjct: 196 FEGGT 200 >gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei Length = 160 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 8 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 65 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F +R F + +FG E G Sbjct: 66 DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 111 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + P+ P SLN+S V ++V+E + Sbjct: 112 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 154 >gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341] gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341] Length = 157 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G +AR N T+L L+ P +K + + + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLV 58 Query: 73 VFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V+ + E A D H+ T ++N + +E +++ IFGRE Sbjct: 59 VWDSFDEFLEATNDKHYYLITKFGSKNYCDFDFSNEEN-----------EDIYFIFGRET 107 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E E S + P++ SLN+S L+++E + Sbjct: 108 KGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151 >gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330] Length = 167 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGL 132 +L + + + + + A + E + + +FGRE GL Sbjct: 62 ESLDDFMEQID-------------GHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGL 108 Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 109 P-EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163 >gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A++ Sbjct: 30 PHNVSAIIRTADAVGVHEIHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVS 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS] gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC 8739] gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 53638] gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 101-1] gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str. REL606] gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088] gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 119-7] gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 187-1] gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70] gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA271] gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591] gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS] gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC 8739] gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 53638] gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 101-1] gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)] gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606] gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)] gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088] gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 187-1] gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 119-7] gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70] gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli EC4100B] gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520] gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482] gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489] gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007] gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli TA271] gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591] Length = 157 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 150 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 19/163 (11%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 +P++ N G R + +L LV P SE + + SV V NL+ Sbjct: 2 FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLE 60 Query: 79 EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A L ++A TA A + ++FG E GL + Sbjct: 61 AAWDALRPERVFAFTA--------------HASTSYADLAYQPGDVLLFGPEPTGLAQDV 106 Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + A + P+ P SLN+S A ++ +E + Sbjct: 107 LEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQHGFAGG 149 >gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp. SIP3-4] Length = 164 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N T+L LV P +K + +++V N Sbjct: 14 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72 Query: 77 LKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A+A TT + + I + +FG E GL Sbjct: 73 WEACCAALAGRRMFALTTKGSARHS---------------TIAFQEGDVFVFGPETRGLP 117 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E + P+ P SLN+S + ++++E + Sbjct: 118 EEIRDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQHDFAGA 163 >gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582] gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582] Length = 157 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL ++ P +K + + RV + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPMGFPWDDKRLRRA--GLDYHEFTRVKRH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 AD A+ + + A + + Q ++FG E GL E Sbjct: 61 -----ADYAAFMAS-----EQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S AV ++V+E Sbjct: 111 LNALPPQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147 >gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%) Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 +I+V+ + N+G + R+ F + L + + + + + SS ++ Sbjct: 108 TVIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVGCLFGMEVYQAE 167 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L E + F TT E+A L +R F Q ++FG E GL Sbjct: 168 NKETL-EFLQKNSFNIYTT-----------LMDESAEDLYKRDFR-QRSAVLFGTEHSGL 214 Query: 133 TNEEIALSNAIIS------FPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ SLN+S AV + +E + Sbjct: 215 S-------DFWIGKGKNTLIPMAGSIDSLNLSNAVAITCYESLRQ 252 >gi|213416855|ref|ZP_03349999.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 52 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 +L G+ R ++++ L +F R +E+ +LRGI++++++ ++ Sbjct: 1 QTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 50 >gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans JJ] Length = 196 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 N+ + R+ F + ++ L+ +P + SS +A +++ R +L ++ Sbjct: 34 PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETTRHPDAASLASSLK 92 Query: 83 DLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 F AT+ E A L E +G V II G E G+ E + Sbjct: 93 GQGFALVATS------------FSETARPLQEWDLTG-KVAIILGNEHRGVDEELAPYVD 139 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 + P+ + SLN+S A ++++E + + + E E Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQRLAAGCYDAPCLPP----EEFDRLAAAWEQ 195 >gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 152 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L+ P+ N+G ++R ++L L+ P S K+ + D + V Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKA--GIDYWDKLDLVVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E ++ K++ + + I IFGRE+ G+ Sbjct: 61 DSLDEF---YTYV---------KDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEK 108 Query: 135 EEIALS-NAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 E + I + P N L SLN++ +V ++++E + Sbjct: 109 EILDKYKEKIYTIPMTNKLNRSLNLANSVAIVLYEGLRQ 147 >gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 154 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R N T+L LV P +K + +++V N Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 62 Query: 77 LKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A+A TT + + I + +FG E GL Sbjct: 63 WEACCAALAGRRMFALTTKGSARHS---------------TIAFQEGDVFVFGPETRGLP 107 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E + P+ P SLN+S + ++++E + Sbjct: 108 EEIRDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQHDFAGA 153 >gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae CGSP14] Length = 180 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 74 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133 +L++ I ++ K L K A V +E + + ++ +FGRE GL Sbjct: 75 ESLEDFI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 122 Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 123 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae TIGR4] gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP3-BS71] gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP9-BS68] gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP11-BS70] gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS69] gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP19-BS75] gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00] gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00] gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195] gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016] gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031] gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585] gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974] gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2] gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP-BS293] gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS292] gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS397] gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS457] gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS458] gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200] gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B] gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4] gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP11-BS70] gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS69] gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP19-BS75] gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP3-BS71] gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP9-BS68] gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00] gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00] gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195] gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016] gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585] gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031] gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP14-BS292] gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae SP-BS293] gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS458] gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS457] gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS397] gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae AP200] gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B] gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA04375] gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA17570] gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA17545] gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA41317] gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA47368] gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA47901] Length = 167 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133 +L++ I ++ K L K A V +E + + ++ +FGRE GL Sbjct: 62 ESLEDFI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 109 Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 155 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 29/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L +P++ N G +AR+ L T+L L+ P +K + D + Sbjct: 5 IVLYEPEIHWNTGAIARSC---GLTHTRLHLIEPFGFEIDDKHLKRA--GLDYWDLVDIN 59 Query: 73 VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ N++E A + F ATT A L + I+FG E Sbjct: 60 IYKNVEELYAKYPEGRFFMATT---------------KAKKLYTEVEFQDEDFIMFGPET 104 Query: 130 WGLTNEEIA-LSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171 GL + I + I P+ F SLN++ + ++++E + Sbjct: 105 RGLPEDMIFGNYDMAIKIPMLKDFGRSLNLANSANIILFEALRQ 148 >gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1] Length = 156 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 16/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N +A + T L L+ P EK + +SV + + Sbjct: 5 VVLYQPEIPANTANIALTCAVTD-TALHLIRPIGFSTDEKMIKRA--GLDYWESVNITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+E + +N F + E A + + +FG+E GL Sbjct: 62 DSLEEFFS----------KNHGEFYYIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPE 111 Query: 135 EEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S ++V+E + Sbjct: 112 DLPERYHGHFLRIPMNDNVRSLNLSNTAAILVYEALRQQ 150 >gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 EDL933] gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. Sakai] gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli E24377A] gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4113] gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4401] gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4501] gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4486] gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4196] gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4076] gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC869] gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC508] gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A] gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22] gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E110019] gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171] gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. EC4024] gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4206] gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4045] gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4042] gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4115] gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11] gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. TW14588] gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1] gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989] gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. TW14359] gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009] gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368] gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128] gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000] gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966] gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O55:H7 str. CB9615] gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 107-1] gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 115-1] gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 182-1] gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 78-1] gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 145-7] gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E24377A] gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4196] gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4113] gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4076] gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4401] gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4486] gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4501] gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC869] gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC508] gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A] gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22] gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E110019] gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171] gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4206] gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4045] gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4042] gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. EC4115] gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli] gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli] gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O157:H7 str. TW14588] gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989] gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1] gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359] gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368] gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009] gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128] gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli O55:H7 str. CB9615] gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 115-1] gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 182-1] gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 107-1] gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 78-1] gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 145-7] gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. EC1212] gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101] gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89] gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687] gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905] gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61] gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14] gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010] gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68] gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180] gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357] gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120] gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS 117-3] gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167] gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. 1044] gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str. 1125] Length = 157 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB] Length = 221 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 24/158 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS++ R +S++ V + +A+ Sbjct: 19 PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVK 73 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L + AT + + +E L I+ G+E+ G+T E +A Sbjct: 74 QLKQQKMQVLAT-----HLSADAVDFREIDYTL--------PTCILMGQEKTGITEEALA 120 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L++ I P+ + SLN+S A L+++E + Sbjct: 121 LADRQIVIPMVGMVQSLNVSVACALILYEAQRQRQNAG 158 >gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis Bu] Length = 156 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHP 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFQPGDW---------------FVFGSETR 106 Query: 131 GLTNEEIAL-SNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + +NA + P+ P SLN+S V ++V+E + Sbjct: 107 GLPAPLLERFANAQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 156 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 27/171 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++L +P++ N G + R N +L L+ P G+P E A+ A D V+V+ Sbjct: 4 VVLFEPEIPPNTGNIIRLCANTG-AKLHLIEPL-GFPMEDAKLRRAGLDYHEFARVKVYK 61 Query: 76 NLKEAIADLH----FIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N + + D H ++A TT + N + +P + +FG E Sbjct: 62 NWAQFLQDEHPNPEHLFALTTKGSGNFHEGQYSPNDY---------------FVFGSETK 106 Query: 131 GLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G+T +E+ ++ + + SLN+S V ++V+E + ++ + Sbjct: 107 GIT-DEVRNSIPAHNRMRLAMQDSSRSLNLSNTVAIVVYEAWRQNGLAGGQ 156 >gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633] gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus K5030] gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AN-5034] gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus Peru-466] gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633] gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus Peru-466] gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus AN-5034] gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio parahaemolyticus K5030] Length = 159 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V N Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62 Query: 77 LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + TT + + A + ++FG E Sbjct: 63 YQAFLEYLDKEKQGNYRLFACTTKTTG----HHVDAQYKAGDV-----------LMFGPE 107 Query: 129 RWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I I P+ P SLN+S AV ++ +E Sbjct: 108 TRGLPAEIIEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152 >gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218] Length = 228 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 18/167 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R L ++ V WP+E+ R+ SA A ++ V ++ +AI Sbjct: 30 PNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSAGARNWVE-VETHNSTLDAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T + + V + A+ + I Q II G E+ G++ + +AL++ Sbjct: 84 K--------TLKAQGMQVLVTNLSDDAVDFRD-IDYTQPTAIIVGSEKVGISKQALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 I P+ + SLN+S A L+++E + E PA Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYKRDESPLPAD 181 >gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 165 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query: 17 IILVDPQL---GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 IILV + N G + R F + ++ + S + R ++ N + I RV Sbjct: 17 IILV-CEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEKTIPF-RV 74 Query: 74 FSNLKEAIADLHFIYATTARNR--NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +K + +LH + T+ +N K + V +I G E G Sbjct: 75 SDTIKNTLQELHDLSFTSIALEITSNSKPMSTVD---------FSRLDKVALIIGAENIG 125 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +T+E + N I + + S+N++QA + ++E + Sbjct: 126 ITDETLEQCNNIAHITMYGINSSMNVAQATGIALYELTRS 165 >gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM 7084] Length = 299 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 11/169 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N G + R+ + + + N R A +SA A + RV Sbjct: 142 VVLLDHVTDEGNFGAIVRSAEVVGASGIVIANARSASVGVGAYKTSAGAVMHLPIARV-P 200 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ R + V A E A G + ++ G E G++ Sbjct: 201 NLATALD----------RLKEAGFWVAAATEHAEQDAWSAPLGGRLCLVMGSEGGGISRL 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + P SLN++QA ++ +E + S + + + + Sbjct: 251 VRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLRRSSMGPSPSAEGGD 299 >gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia thailandensis TXDOH] Length = 156 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++LV+P++ N G V R N +L L+ P G+P + A+ A + + V Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAG-LDYHEYAQMHVH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D +A T R F +R F + +FG E Sbjct: 61 RDWDAFVAAEAPDPARTFAFTTRGSGRFH-------------DRAFQPGDW-FVFGSETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + P+ P SLN+S V ++V+E + Sbjct: 107 GLAPALVERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973] Length = 181 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 17/178 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L D + N+G V R+ F ++ + L P + ++ A Sbjct: 16 EEFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGA 75 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + I R F+ +EA+ +L F+Y+ + L + Q Sbjct: 76 EESIAW-RYFATAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLERR-----------QK 123 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E G+ + LS+ + P SLN+S A ++VWE + + + Sbjct: 124 YAVVLGNEVKGVHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQLLQPLQP 181 >gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1] Length = 248 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 LQN+ + ++ L N+G R + +V PRD + AR +A Sbjct: 91 LQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAA-VIV-PRDRSASLTPTARKVAAGGA 148 Query: 66 CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + ++V +NL +A + T +L E A+ + + FSG N Sbjct: 149 EKVKFIQV-TNLARTLAHIKAHFFVKVVGT----------MLD--EKALPIQKYDFSG-N 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V I+ G E GL + + + P++ SLN+S A + ++E + Sbjct: 195 VAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQRL 247 >gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum ATCC 13032] gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R] gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum ATCC 13032] gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium glutamicum ATCC 13032] gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R] Length = 157 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +I +P + N G R L LV P +EK + + V V + Sbjct: 8 VIFDNPVIPPNTGNAIRMCAGTG-AHLHLVEPLGFELTEKHLRRAGLDYHDLADVTVHAT 66 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A F + TTA R + F + ++FG E GL Sbjct: 67 FDEAMAAVPGRVFAFTTTANTR---------------FTDIAFEPGD-ALLFGTEPTGLP 110 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + S + P+ P S+N+S + + +E Sbjct: 111 QEHVEHSRITSELRIPMLPGRRSMNLSNSAAVATYEAWRQ 150 >gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 246 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 21/172 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANAD 65 ++ SA +++L N+G R + +V P+D + R + A Sbjct: 91 IKKSATPFLLVLDGVTDPHNLGACLRTADAAGID--AIVVPKDNSVALTPVVRKVACGAA 148 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 +I ++V + L+E ++ T A + + Sbjct: 149 DLIPLIQVTNLARTLREIKDAGVWVVGTAG--------------EATQSIYQCKMQGPIA 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + +I P+ SLN+S A + ++E + + Sbjct: 195 LVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEIVRQRAL 246 >gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 156 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L PQ+ N G +AR T L L+ P +K + +SV + Sbjct: 5 IVLFQPQIPGNTGSIARTCA--GTYTHLHLIKPLGFSTDDKMLKRA--GLDYWESVNITY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + N++ + T K + + + + IFGRE GL Sbjct: 61 YENIESFFENTD---GTYYLLTKFGKKTYSDFDF-------TDTEHDHFFIFGRETTGLP 110 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + A + + P+N SLN+S L+++E + Sbjct: 111 DWVKDAYAETALRIPMNDNIRSLNLSNTASLLIYEALRQQ 150 >gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K] Length = 225 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 26/179 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +N+ V R F + L + P P ++ + S NAD +D VR +S+ E +A Sbjct: 38 PQNVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSSTTECLAH 94 Query: 84 LHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L +YAT R+ + + + V ++FG E+ G++ E +AL Sbjct: 95 LRAEGFAVYATHLGERS--RPM-----------AGLSFAGKVALVFGNEQRGVSEEALAL 141 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFL 196 ++A + P+ SLN+S A + + +E V ++ + P + ++ F Sbjct: 142 ADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH---GDLPEDEAQVLRERFY 197 >gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. JA-3-3Ab] Length = 354 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 20/183 (10%) Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 Q + S PV ++L Q N+G +AR++ F + + + R + +A A Sbjct: 179 EQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGA 238 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + RV NL A+ L ++Y TT+ + A + F + Sbjct: 239 LSTLPVARVV-NLNRALEYLKGQGFWVYGTTS-------------QGAAPIYSADFR-RP 283 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ G E G++ + ++S P+ SLN S A + ++E +N+ Sbjct: 284 IALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHRGRNI 343 Query: 181 KEQ 183 +Q Sbjct: 344 SQQ 346 >gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 229 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 151 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 25/166 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + P + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFTPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 L + + LS+ + P+ SLN+S V + V+E V+ Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQHGVA 151 >gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 153 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R + N QL L+ P +K + D V Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLANVSHH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + +A+ + TT +R + +E F +V ++FG E G Sbjct: 61 KNFESFLKAMQGKRIMACTTKGSRPH--------------SELTFQQDDV-LLFGPESRG 105 Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I + + P+ SLN+S AV ++ +E Sbjct: 106 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147 >gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1] Length = 218 Score = 72.0 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGRGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863] gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509] gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v] Length = 157 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ + E L G ++FG Sbjct: 55 --------------TAVTRHHNYAAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708] gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708] Length = 270 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 18 IL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +L V+ Q N+G + RA + L L + + K +SA +D V Sbjct: 119 VLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKA-VSP 177 Query: 76 NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +LK + + AT + V + I+ G E G Sbjct: 178 DLKATVQQCQQAGMQVIATLPTASLTYWEV--------------DWRKPSLILLGNEGAG 223 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L+++ A+++ + P+NP SLN++ A LM++E I Sbjct: 224 LSDDLAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQKI 265 >gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021] Length = 186 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 16/162 (9%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---A 80 NIG + R F + ++ L + KA+ ++ D ++ ++ A Sbjct: 38 GPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLVAWEEPVPAVEAVRAA 97 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 AD + A V +AA + + G +V ++ G E G + + + Sbjct: 98 KADGFTVVA-----------VELTGDAAPLHAAEL--GGDVCLVVGSEDHGCSPALLEAA 144 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + P S N++ A + + E E E Sbjct: 145 DGVCYIPQVGRVGSFNVAVATAIALAEARRREWSGKEAPDGE 186 >gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893] gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893] Length = 154 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++L +P++ N G + R N QL L+ P +K + + V Sbjct: 4 VVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTLEDKQMRRA--GLDYSEYATVTVH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E+ TT +R + ++FG E G Sbjct: 61 SDYQAFLESEQPSRLFGLTTKGSRGYH---------------DVEYQNGDYLMFGPETRG 105 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + E + + P+ P SLN+S V L+V+E Sbjct: 106 LPQDIREAMPEHHRLRVPMRPESRSLNLSNTVALVVYEAWRQ 147 >gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71] gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71] Length = 154 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 17/163 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L +P++ N G + R N + L L+ P +K + V+ + Sbjct: 4 VALYEPEIPPNTGNIMRLCANTSCP-LHLIKPLGFSLEDKQLRRAGLDYREFAHVQTHDS 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 L I LH R R S + ++ ++FG E GL Sbjct: 63 LDALIQTLH-------RPRIWTLSTRGTRNYTDADFQKGD-----VLLFGPETRGLPATV 110 Query: 135 -EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +E+ + + + P+ P SLN+S A L+++E + Sbjct: 111 LDELGV-HRCLRVPMYPDSRSLNLSNAAALVLYEGLRQQGFPG 152 >gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227] Length = 157 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +V N Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++A T + P +A+ G ++FG E GL + Sbjct: 63 YAAFLKAENPQRLFALTTKG--------TPAHSAV----SYQDGDY--LMFGPETRGLPS 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 109 SILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134] Length = 176 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 66/163 (40%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + K VI+L + + N+G R F + ++ L P + + ++ A + Sbjct: 19 ETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGATESV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 + + +EA+A T + + + ++ L + + + +FG Sbjct: 79 AW-QHVATTEEALA--------TLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E +G+ E + ++ I P SLNIS ++ +++W+ Sbjct: 130 EVFGVDEEVVKQADVCIEIPQFGTKHSLNISVSMGVVIWDYFS 172 >gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578] gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923] gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578] gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923] Length = 169 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + ++ +FG+E Sbjct: 61 YDSLDEFFEKNEGGEFYYIT-----KFGRHVYSDINY-------SDTNKDYFFVFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151 >gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989] gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9] Length = 229 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGRGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36] gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36] Length = 184 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + +++ + E + + +FGRE GL Sbjct: 79 ESLDDFMEQMD-----------GQLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno] Length = 180 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++IL + + NIG V R F + ++ L P+++ ++ A + Sbjct: 19 KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78 Query: 69 DSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIF 125 V + L E + + + + + E + +LN+ +G Q IIF Sbjct: 79 AWEYVENTLSVVEKLKE-----------QGVYIISIEQAENSTMLNDFQSNGKQKYAIIF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E ++ S+ +I P SLNIS + + +WE Sbjct: 128 GNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172 >gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus TB-2] gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus TB-2] Length = 153 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +PQ+ N G + R N +L +V P S+KA + D + +V+ Sbjct: 4 IVLFNPQIPPNTGNIGRLCVNAG-AKLHIVKPIGFDISQKAVKRA--GLDYWDKLDLKVW 60 Query: 75 SNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++E + ++ +ATT P ++ G IFG E G Sbjct: 61 ESVEEFLKNVDTNRCFFATTKTK--------TP-----YFEKKYKKGDY--FIFGSETKG 105 Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I+ P+ SLN++ + ++++E + Sbjct: 106 IDEKILNQYKENNITIPMTNEGRSLNLAVSCGIILYEAIRQ 146 >gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 249 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 82 PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 141 Query: 65 DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + R + + +K + D F I A T E + Sbjct: 142 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 186 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V II G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K Sbjct: 187 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246 >gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus PC510] Length = 255 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147 Query: 65 DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + R + + +K + D F I A T E + Sbjct: 148 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V II G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252 >gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_33FAA] Length = 249 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 82 PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 141 Query: 65 DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + R + + +K + D F I A T E + Sbjct: 142 LHTLPVCREQSLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 186 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V II G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K Sbjct: 187 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246 >gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4] gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855] gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 255 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147 Query: 65 DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + R + + +K + D F I A T E + Sbjct: 148 LHTLPVCREQSLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V II G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252 >gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] Length = 255 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147 Query: 65 DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + R + + +K + D F I A T E + Sbjct: 148 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V II G E G+ E ++L + I P+ SLN+S A ++++E ++ + +K Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252 >gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 162 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + A++AR L K +G ++FG E GL Sbjct: 63 YFAFLENEGLTGASSARL-----FALTTKGTPAHSAVSYQAGDY--LMFGPETRGLPPYV 115 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V ++V+E Sbjct: 116 LDNMPPQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQ 152 >gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 151 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E I + TT +R + P + +FG E G Sbjct: 61 PDLASCMEKIGNPRLFAFTTKGSRPFHDASFEPDD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319] gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319] Length = 182 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 12/171 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P +++L D + N+G V R+ F + + L P+ + ++ Sbjct: 15 EEFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGG 74 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +D + F ++A+ DLH F+Y + + + A E + + Sbjct: 75 EDSVDW-KYFERTEDAVEDLHKKGVFVY--SVEQVEHSTKLHTLDLNA----ESTTNNSH 127 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 II G E G+ + +S+A + P SLN+S +++WE + Sbjct: 128 YAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQ 178 >gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B] Length = 157 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPIGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 TA R++ E L G ++FG Sbjct: 55 --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100 Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + I P+ P S+N+S AV ++V+E Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group] Length = 254 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 20/180 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV P + N G +AR + L LV P + + V ++ Sbjct: 75 VVLVSPLIPGNTGSIARTCAASAVG-LHLVGPLGFKVDDTKLKRA--GLDYWPYVVVKIH 131 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E D ++ K +LA + ++ ++FG E GL Sbjct: 132 DSWNE-FRDYFM-------KQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQ 183 Query: 135 EEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 + + I P+ + LN+S +V + ++E E A Sbjct: 184 SALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEA 243 >gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803] gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803] Length = 384 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 19/174 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 S +II+ N+G + R F + L R + +A A Sbjct: 212 SQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHF 271 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV NL A+ L +IY T A + L E +G++ Sbjct: 272 PVARVV-NLSRALETLKESGFWIYGTVAGKQTALHQ--------ADLRE------PMGLV 316 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E GL+ + +I+ P+ PSLN S A + ++E Sbjct: 317 IGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQRGFDRPT 370 >gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8801] gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 8802] Length = 292 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 24/178 (13%) Query: 6 PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 Q + S+ PVI++ +N+G + R L + R + +A A Sbjct: 129 EQAKASSNEPVIVIADGIADPQNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGA 188 Query: 65 DCVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 RV LKEA +IY T A + ++ L Sbjct: 189 LESFPVARVVNLSRALETLKEA---GFWIYGTAATGGKSLHNM--------ELR------ 231 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +G++ G E GL+ + +IS P+ PSLN S A ++++E Sbjct: 232 GPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLNASVAAAIVLYEVYRQRWSEK 289 >gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190] gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579] gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902] gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis NZ-05/33] Length = 261 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A + Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167 Query: 73 VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R +E VL G +FG E Sbjct: 168 IYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor] gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor] Length = 257 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 20/190 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + + ++LV P + N G +AR + L LV P + + Sbjct: 68 EVARARRMLHVVLVSPLIPGNTGSIARTCAASAVG-LHLVGPLGYKVDDTKLKRA--GLD 124 Query: 67 VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V ++ + + + K +LA + ++ ++ Sbjct: 125 YWPYVVVKIHDSWD---HFFDYFM-----KQEGDKRLLAFTKRGTQIHSDFSYRPGDWLV 176 Query: 125 FGRERWGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177 FG E GL + + + P+ + LN+S +V + ++E Sbjct: 177 FGSETKGLPQQALEDCCREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQL 236 Query: 178 KNVKEQNTPA 187 + E A Sbjct: 237 QYQPELPEEA 246 >gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato T1] gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato Max13] gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato K40] gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato T1] Length = 151 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + P + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFTPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342] Length = 229 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS + R+ ++ A V+ + +A+ Sbjct: 30 PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + AI E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLF 188 >gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas gingivalis ATCC 33277] Length = 180 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 14/162 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ IIL D + N+G V R F L L L P ++ A+ + Sbjct: 19 ESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIF 125 FS++ +AI +L + S+ A ++A L+ FS G +IF Sbjct: 79 KW-EYFSSVVDAIEEL----------KAKGYSICAIEQAEGSLSLENFSPSKGTRYALIF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E G+ E I L + + P SLN+S +++W+ Sbjct: 128 GNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQ 169 >gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus rhamnosus GG] gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus rhamnosus Lc 705] gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG] Length = 169 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +P + N G +AR N + L L+ P +K + VR+ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIVYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + +A T ++ + + + + + + +FG+E GL Sbjct: 62 DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPE 113 Query: 135 ----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + P+ +LN+S L+V+E + + + V Sbjct: 114 GFMREHEDQC---LRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVH 161 >gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus succinogenes 130Z] Length = 245 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 24/174 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L +++L N+G R + +V P+D + AR + A Sbjct: 89 LNGKPNPLLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V+ +RV +NL + D+ ++ T A + + Sbjct: 147 EVLPLIRV-TNLARTLRDIQQSHNIWVVGTAG--------------EASETLYQTELTGS 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 LALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245 >gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240149] Length = 261 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL--- 165 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ +L+ +A ++AT R +E VL G +FG Sbjct: 166 SGIYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1] Length = 229 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ + A SV+ + +A+A Sbjct: 30 PHNVSAIVRTADAVGVHEVHAV-----WPGNRMRTMASTAAGSNSWVSVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R ++A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 QL--------KGRGMQILATHLSDSAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ ++E +T + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSTLPQEEQQRLLFE 189 >gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 167 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 66/161 (40%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ ++ + +++ + + + + +FGRE GL Sbjct: 62 DSLEDFMSQM-----------KGKLYLISKFAEKVYSEADLSTDEAHYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75] Length = 229 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 20/175 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L + +L + A+ E I + I+ G+E+ G+T E +AL+ Sbjct: 85 HL----------KGQGMQILTTHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 + I P+ + SLN+S A L+++E + + P T+ + L F Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPETEQQRLLF 188 >gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei GB8 horse 4] gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei PRL-20] gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei DM98] gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 14] gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 9] gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei B7210] gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 7894] gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 112] gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei BCC215] gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 576] gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pakistan 9] gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 10399] gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pasteur 52237] gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei FMH] gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei JHU] gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710a] gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 406e] gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei 2002721280] gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 23344] gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710b] gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei SAVP1] gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei NCTC 10229] gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei NCTC 10247] gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei FMH] gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei JHU] gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei 2002721280] gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 406e] gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pasteur 52237] gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei ATCC 10399] gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 576] gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei Pakistan 9] gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei GB8 horse 4] gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei PRL-20] gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1710a] Length = 156 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F +R F + +FG E G Sbjct: 62 DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + P+ P SLN+S V ++V+E + Sbjct: 108 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 247 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 14/171 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L ++IL N+G R + +V P+D + AR + A Sbjct: 89 LSQKKNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTPTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ +RV +NL + DL R+N V EA + E +G ++ ++ Sbjct: 147 EVMPLIRV-TNLARTMRDLQ--------ERHNVWIVGTAGEAESGIYEAKLTG-SIALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAGQ 247 >gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 166 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 28/174 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 I+L P++ +N G + R T L L+ P EK + D +D R Sbjct: 3 IVLHQPEIPQNTGNIGRTCVATG-TSLHLIEPLGFRLGEKDLKRA-GMDYWQHLDVTRYV 60 Query: 75 S--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E ATT A + G + I+FG+E G+ Sbjct: 61 DYQDFLEKHPGAKIWMATT---------------KAKKCYTDVQFGMDDFIMFGKESAGI 105 Query: 133 TNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E + I P+ SLN+S +V ++++E + + + + E Sbjct: 106 PEEILVDNEENC---IRIPMGSDIRSLNLSNSVAIVLYEALRQNNFAGLEQQGE 156 >gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301] Length = 154 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L LV P +K + +++V N Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGAA-LHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVHEN 62 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + A L F T R+ +E F ++V +FG E GL Sbjct: 63 WEACKASLTGKRLFAITTKGSTRH---------------SEIQFKAEDV-FVFGPETRGL 106 Query: 133 TNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EEI + + P+ P SLN+S + ++++E Sbjct: 107 P-EEIRAEFTAEHRLRLPMLPDSRSLNLSNSAAVLLYEAWRQ 147 >gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 157 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + A A L K G ++FG E GL Sbjct: 54 FTAVLRHPDYA-AFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWHQ 147 >gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei MSHR346] gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 668] gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei MSHR346] Length = 179 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 27 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 84 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F +R F + +FG E G Sbjct: 85 DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 130 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + P+ P SLN+S V ++V+E + Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173 >gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans MPOB] gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans MPOB] Length = 164 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P++ +N G +AR T L LV P +++ + VR V Sbjct: 12 VVLYQPEIPQNTGNIARTCAAT-HTPLHLVEPLGFRITDRGLKRA--GLDYWPHVRLKVH 68 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+ ++ + + + R G + FG E +GL N Sbjct: 69 PDLESLCREI----------GDRRWVYFSAHADRRYCDFRFQPGD--CLFFGSESFGLPN 116 Query: 135 EEI-ALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171 + + + +I+ P+N SLN++ +V + ++E + Sbjct: 117 DLLVSRPGFVINIPINRARVRSLNLATSVGIALFEALRQ 155 >gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435] gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 156 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWGL 132 ++I D F AT + L K ++ FS ++ IFGRE GL Sbjct: 59 -TYHDSIED--FFDAT------QGEYYLLTKFGKQTYSDFDFSKEDTDYYFIFGRETTGL 109 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P++ SLN+S L+++E + Sbjct: 110 PDWVKDKYADTALRIPMSENIRSLNLSNTAALLIYEALRQQ 150 >gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ + A SV+ + EA++ Sbjct: 30 PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMASTAAGSNSWVSVKTHQTIGEAVS 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQVLATNLSAKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSMLPEEEQQRLLF 188 >gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8] gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis JLW8] Length = 250 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 29/178 (16%) Query: 8 LQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L++ P IL + N+G R + ++ P+D + R + Sbjct: 91 LESDLSEPAFFLILDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148 Query: 64 ADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A V + R LKEA F+ TT ++ ++L K Sbjct: 149 AAETVPFIAVTNLARTIRELKEA---GVFVVGTTM---DSPSTLLNTKLNGP-------- 194 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ +A+++ P+ SLN+S A + ++E ++ Sbjct: 195 ---IALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQRSLA 249 >gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 290 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R F + + + R + SS A + RV + Sbjct: 143 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 201 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL I +L ++Y T R + + G II G E G Sbjct: 202 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGPCAIIIGNEGKG 247 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + + +I P+ SLN S A ++++E ++ + Sbjct: 248 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 289 >gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum E3 str. Alaska E43] Length = 290 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R F + + + R + SS A + RV + Sbjct: 143 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 201 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL I +L ++Y T R + + G II G E G Sbjct: 202 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGPCAIIIGNEGKG 247 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + + +I P+ SLN S A ++++E ++ + Sbjct: 248 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 289 >gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 152 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L+ P+ N+G + R ++L L+ P S++ + + V + Sbjct: 4 IVLIAPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEHVDLVIH 60 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++E I D F + T ++ G +IFGRE+ G Sbjct: 61 DSIEEFMEYIKDKRFFFVETGSDKRYTDV-------------SFKDGDY--LIFGREKEG 105 Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 + + + S +I+ P+ SLN++ +V ++++E + Sbjct: 106 IDQKLLDEYSKQVITIPMTKKIDRSLNLANSVSIILYEALRQ 147 >gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 206 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 20/196 (10%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + +++ K P +++L D + N+G V R F + + L P+ + ++ Sbjct: 13 SVEEFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIY------ATTA----RNRNNFKS---VLAPK 105 + +D R F ++A+ +LH F+Y +T N + Sbjct: 73 GGEDSVDW-RYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAV 131 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + AI N + S +IFG E G+ + +S+ + P SLN+S ++V Sbjct: 132 DTAIE-NRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVV 190 Query: 166 WECMENSIVSSEKNVK 181 WE + + ++ + Sbjct: 191 WEFAKMKLAKQPQHQQ 206 >gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 297 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 12/164 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G +++L +NIG + R+ F + L + + ++A A + RV Sbjct: 142 GVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAGAADRVPFARV 201 Query: 74 FS---NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +L E + + ++ N ++LA + I L + + ++ G E Sbjct: 202 TNLSRSL-ELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLV-------LVLGSEG 253 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL + + P+ F SLN+S A + ++E + + Sbjct: 254 EGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEALARTP 297 >gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143] gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143] Length = 180 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 70/172 (40%), Gaps = 24/172 (13%) Query: 10 NSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 N + P+ I+L +PQ+ +N G +AR N + L ++ P ++ + Sbjct: 7 NDKRKPIMTNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GL 63 Query: 66 CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 D + + + NL + ++ + +++ + + + ++ Sbjct: 64 DYWDKLEIHFYDNLADFMSQM-----------KEKLYLISKFAEKVYSEADLSTDEDHYF 112 Query: 124 IFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 +FGRE GL E+ + + P+N SLN+S V ++V+E + Sbjct: 113 LFGREDKGLP-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 156 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L+ P+ N+G ++R ++L L+ P S+K+ + D + V Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSDKSLKKA--GIDYWDKLDLVVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++E + ++ K++ + + I +IFGRE+ G+ Sbjct: 61 DSMEEFLEYIN------------GKNIYLIETGSDKNYADISYKDGDYLIFGREKEGIDK 108 Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 + I + + + P+ SLN++ +V ++++E + Sbjct: 109 KIIEKFKDRVYTIPMTKNMDRSLNLANSVAIVLYEGLRQ 147 >gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC 29220] Length = 229 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +++A V+ + +A+ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASSAAGSNSWVQVKTHPTISDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 84 -------TQLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRENSMLPEDEQQRLLF 188 >gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424] gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424] Length = 157 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 36/170 (21%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G +AR N T+L L+ P +K + + + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLI 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------QNVGII 124 V+ + E + AT+ +N ++I+S + + I Sbjct: 59 VWDSFDEFLE------ATSDKNYYLI----------TKFGQKIYSDFDFSNKNDEEIYFI 102 Query: 125 FGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FGRE GL E E S + P++ SLN+S L+++E + Sbjct: 103 FGRETKGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151 >gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 152 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 20/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L P++ N G VAR TQL L+ P G+ + A D ++ V+ Sbjct: 3 IVLYHPEIPPNTGNVARLCAAT-RTQLHLIEPL-GFSLDDRYLKRAGLDYWPHVNLSVWP 60 Query: 76 NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + + T+AR A R + ++FG E GL Sbjct: 61 DWQAYLDGPGSERRLVMTSAR--------------AGAAVHRFDFTERDALVFGPETTGL 106 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E + + + P+ SLN+S A +++++ + ++ Sbjct: 107 PAEVLDATPHHVRIPIWGEVRSLNLSTATGIVLYQALAHTGA 148 >gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1] gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1] Length = 232 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 24/158 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS++ R +S++ V + +A+ Sbjct: 30 PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVK 84 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L + AT + + +E L I+ G+E+ G+T E +A Sbjct: 85 QLKQQKMQVLAT-----HLSDDAVDFREIDYTL--------PTCILMGQEKTGITEEALA 131 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L++ I P+ + SLN+S A L+++E + Sbjct: 132 LADRKIVIPMVGMVQSLNVSVACALILYEAQRQRQNAG 169 >gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM 15053] gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM 15053] Length = 163 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 30/164 (18%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P++ N G + R N +L L+ P +EK + D + V Sbjct: 4 IVLHEPEIPANTGNIGRTCVAAN---ARLHLIEPLGFRLNEKNLRRA--GMDYWDELDVT 58 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F E ATT A + + + I+FG+E Sbjct: 59 TYIDFDEFLEKNEGARIYMATT---------------KAPNVYTDVRYEPDCYIMFGKES 103 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ EEI + + I P+ SLN+ +V ++++E + Sbjct: 104 AGIP-EEILVKHKEDSIRIPMAGDIRSLNLGNSVAIILYEALRQ 146 >gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei ATCC BAA-286] Length = 246 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 16/169 (9%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + K P I +L N G +AR + + + + A +SA A Sbjct: 87 PFLYENGKDPFILVLDGITDVRNFGAIARTCEVAGVNAIVIPAKGSVTVNADAVKTSAGA 146 Query: 65 DCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + V NL AI L RN+ V+A E + I + Sbjct: 147 ---LLKIPVCKEPNLTSAIQFL----------RNSGIKVVAASERGADIYTEIDYTGPIA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E G+ NE + +++ ++ P SLN+S A ++++E + Sbjct: 194 FVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242 >gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 157 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L L+ P +K + +D F+ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-KLHLIEPLGFTWDDKRLRRAG-----LDYHE-FAT 56 Query: 77 LK-----EAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 LK +A D ++A T + P +A+ +G ++FG E Sbjct: 57 LKKHHDYQAFLDSEQPERLFALTTKG--------TPAHSAV----SYQAGDY--LVFGPE 102 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + I P+ S+N+S AV ++V+E Sbjct: 103 TRGLPAYILDALPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQ 147 >gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A] Length = 154 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P++ N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 EA++ ++A TA A L + ++FG E GL + Sbjct: 65 HAWEALSP-ARVFAFTA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--D 107 Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E L++ I+ P+ SLN+S A + V+E + Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAATVAVYEAWRQHGFAGA 153 >gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1] Length = 229 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P T+ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPETEQQRLLF 188 >gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L ++R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KSRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR] gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 154 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 19/165 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L +P++ N G V R N ++ L L+ P EK + + SV + + Sbjct: 5 VLFEPEIPPNTGNVIRLAANTGMS-LHLIEPLGFELDEKKVRRAGLDYHDLASVNIHKDW 63 Query: 78 KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + F I+A T + + N+ +V + +V ++FG E GL E Sbjct: 64 QSFLNSTSFNRIFACTTKGKTNYSAV-------------AYEAGDV-LLFGPETRGLPME 109 Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + P+ SLN+S +V + +E + + + Sbjct: 110 VLETFPQENWLRLPMADTSRSLNLSNSVAIFAYEAWRQNDFTGAR 154 >gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 156 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 36/169 (21%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 VVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNIT 59 Query: 74 -FSNLKEAIA--DLHF-----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + N+++ D H+ +TT + + ++ +F Sbjct: 60 YYENIEQFFDQTDGHYYLITKFGSTTFTDFDYSNP-----------------EEDHYFVF 102 Query: 126 GRERWGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GRE GL + +E + + P+N SLN+S ++V+E + Sbjct: 103 GRETTGLPDWVKEKYH-DTALRIPMNDHIRSLNLSNTAAILVYEALRQQ 150 >gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 247 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 14/171 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L ++IL N+G R + +V P+D + AR + A Sbjct: 89 LSQKKNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTPTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ +RV +NL + DL R+N V EA + E +G ++ ++ Sbjct: 147 EVMPLIRV-TNLARTMRDLQ--------ERHNVWIVGTAGEAESGIYEAKLTG-SIALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAGQ 247 >gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp. Marseille] Length = 165 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 25/172 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G + R N QL LV P G+P + A+ A D +V Sbjct: 9 VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAG-LDYHDYAQMKVH 65 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------LNERIFSGQNVGIIFGRE 128 ++ + + + + + A+ F +V +FG E Sbjct: 66 ADWQAFLNSF-----------PAEQPLNHERMFALTTHGSTPFASMAFQPGDV-FVFGSE 113 Query: 129 RWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E + I P+ P SLN+S V ++V+E + + + Sbjct: 114 TKGLETSLRESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNNFAGGQ 165 >gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei K96243] gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 91] gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei NCTC 13177] gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1655] gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei S13] gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei K96243] gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei S13] gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1655] Length = 156 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 4 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A D ++A T R F P + +FG E Sbjct: 62 DWDAFVAAEAPDPARMFAFTTRGSGRFHDRSFEPGDW---------------FVFGAETR 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + P+ P SLN+S V ++V+E + Sbjct: 107 GLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150 >gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 173 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 24/165 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L P++ N G + R +L ++ P K SA A +++ + V+ Sbjct: 4 IVLFQPEIPPNTGNIIRTCKAT-QAKLHIIKPIAFDLDPKYLKRSA-AGWILEDIEHEVY 61 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG- 131 + + IY T + N+ V ++ + ++ ++FG E G Sbjct: 62 ETYDDFLKKHSEKSIYYLTRYGKINYSDVNF---------KKYQNNDDLFVMFGTESTGI 112 Query: 132 ----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L N + + P++ SLN++ V L+ +E Sbjct: 113 PKKILKNN-LENC---LRIPMDKDMRSLNLANTVFLIAYEIQRQW 153 >gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM 6192] gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM 6192] Length = 154 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 ++L +P++ +N G +AR L L+ P G+ E A D + +RV S Sbjct: 5 VVLHEPEIPQNTGNIARTCAATG-AILHLIEPL-GFSLEDRYLRRAGLDYWPMVDLRVHS 62 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + + ++ + R + P E ++FG+E GL Sbjct: 63 SWEAFLEEERPSSLFLLSTRGTRPYHVCEFPDE--------------TYLVFGKETAGLP 108 Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN+S AV ++V+ + Sbjct: 109 ARILEAFPDRVVRIPMREGARSLNLSNAVAILVYAALRGQGFPG 152 >gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] Length = 182 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 23/172 (13%) Query: 3 PYAPQLQNS---AKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 P A ++ A P I+ V + NIG + R+ F + ++ LV R + Sbjct: 8 PAAEPCSSASGTAGPPCFIITHSVSKRH--NIGTIVRSATAFGVKEVCLVGSR------Q 59 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + ++ + + F L++ + L + R + E A+ ++E F Sbjct: 60 FNTFGSHGSDAHVAFKHFDTLQQCVQHLKDVEGC----RVLGIEIC---EGALPVHEHPF 112 Query: 117 SGQ-NVGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVW 166 +G + G E GL+ ++AL + + P + P SLN++ A +++ Sbjct: 113 TGSSPTAFLLGNEGQGLSERQMALCDGFVYIPQHGPGTASLNVAVAASIVLH 164 >gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium amycolatum SK46] gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium amycolatum SK46] Length = 179 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 23/159 (14%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P + N G R L L P +K + + VR+ ++ +A Sbjct: 31 RPVIPPNTGNAIRMCAGSG-AMLHLAKPLGFNFDDKNLRRAGLDYHDLADVRIHDSIDQA 89 Query: 81 IA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I+A TA A + I ++FG E GL Sbjct: 90 LETFASQGC-RIFAFTA--------------HADTWHTDIEYTNTDVLLFGPEPTGLEQS 134 Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ P S+N+S A + +E Sbjct: 135 VLDDPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQQ 173 >gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106] Length = 295 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Query: 9 QNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ PVI++ + N+G + R ++ L L R + +A A Sbjct: 138 KAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVGITSTVMKVAAGALET 197 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 RV NL A+ +L +IY T+A + + K + V+ + Sbjct: 198 FPVARVV-NLNRALEELKQAGFWIYGTSATA---DQPLYTVKFSGPVV-----------L 242 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT + ++S P+ PSLN+S A + ++E Sbjct: 243 VVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291 >gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei F0204] gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei F0204] Length = 171 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 69/168 (41%), Gaps = 15/168 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 ++L +P++ +N G + R N +L L+ P ++K+ + D V +D +++ Sbjct: 4 VVLYEPEIPQNTGNIMRTCMAMNC-RLHLIEPMGFKITDKSLKRA-GMDYVKELDY-KIY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + ++ N + G+++ ++FG+E G+ Sbjct: 61 PDWQTFYN---------MHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDK 111 Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + + P+ SLN+S V + V+E ++ + + Sbjct: 112 HILHDNYDRCVRIPMVAQARSLNLSNCVAICVYEVLDQLGFPELSHTE 159 >gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253] Length = 157 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +V N Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++A T + P +A+ G ++FG E GL + Sbjct: 63 YAAFLKAENPQRLFALTTKG--------TPAHSAV----SYQDGDY--LMFGPETRGLPS 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 109 SILDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 206 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 7 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 62 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 165 >gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R] Length = 246 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKNPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAGA 147 Query: 65 DCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + + D F I A T E + + Sbjct: 148 LHTLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKADYTGPM 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 194 CIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244 >gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 181 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 13/175 (7%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K P++ +L + + N+G R F + ++ L P + ++ A Sbjct: 16 EFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGAT 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGI 123 ++ F N +A+A L ++ +K + + + E+ + + Sbjct: 76 ETVEW-EHFENTLDAVAKL---------KQDGYKIMSVEQAENSLSLEKFAPKADEKYAF 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 IFG E +G+ E + S+ + P SLNIS ++ +++W + S+ Sbjct: 126 IFGNEVYGVEQEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLWHSVLGSLAPKSP 180 >gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 154 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 ++L P++ N G + R N L LV P G+P + ++ A D S+ V Sbjct: 3 TVVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSSKMKRAGLDYHEFASLTVH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N + ++ L I+A T + + + V +FG E GL Sbjct: 61 ENFADCLSALSGRRIFALT--TKGSTRPDQVSFRPGDV------------FLFGPETRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I P+ S+N+S V ++V+E Sbjct: 107 PAEILDSLPAGQKIRLPMKAGSRSMNLSNTVAVVVFEAWRQ 147 >gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp. 21] Length = 241 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 22/174 (12%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + K P+I IL N G +AR + L + N + A +SA A Sbjct: 82 PTIYEEGKVPLILILDGITDVRNFGAIARTAACAGVDALVVPNKGSAEINPDAIKTSAGA 141 Query: 65 DCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 I +V +L + I L + T +K Sbjct: 142 LYKI-AVCRHESLTQVIKFLQESGLQVVACTEKTGDTIYKPDF---------------KS 185 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E G+++ I ++ + P+ SLN+S + ++++E + + Sbjct: 186 PTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQRV 239 >gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus HN001] gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus HN001] Length = 169 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N + L L+ P +K + VR+ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIIYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + +A T ++ + + + + + + +FG+E GL Sbjct: 62 DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPE 113 Query: 135 ----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + P+ +LN+S L+V+E + + + V Sbjct: 114 GFMREHEDQC---LRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVH 161 >gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822] gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822] Length = 264 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 19/165 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R + L L + + K +SA + +RV NL Sbjct: 115 VLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVP-MRVSQNL 173 Query: 78 KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + I D + AT + + + + I+ G E GL+ Sbjct: 174 PQVIEDYKSQNVQVIATLPQGTKTYWEIDFTR--------------PTLILMGNEGAGLS 219 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +E I+L++ ++ P+ SLN++ A L+++E V+ + Sbjct: 220 DELISLADIGVNIPLGGGVESLNVAIATALLLYEAKRQRAVNQKT 264 >gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1] gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1] gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp. fastidiosa GB514] Length = 153 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P++ N G V R N +L L+ P ++ + + R V Sbjct: 6 VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRQLKRA--GLDYHEYARMQVH 62 Query: 75 SNLKEAIADL--HFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL A+A + ++A + R R + + IFG E Sbjct: 63 PNLSSALAAIAPRRLFALSTRGQVRYDTPTFRT----------------GDAFIFGPETR 106 Query: 131 GLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + I + P+ P SLN+S AV +MV+E Sbjct: 107 GLPDTVL---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 150 >gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon] gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12] gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23] gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon] gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1] gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12] gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23] Length = 155 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P++ N G V R N +L L+ P ++ + + R V Sbjct: 8 VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRQLKRA--GLDYHEYARMQVH 64 Query: 75 SNLKEAIADL--HFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL A+A + ++A + R R + + IFG E Sbjct: 65 PNLSSALAAIAPRRLFALSTRGQVRYDTPTFRT----------------GDAFIFGPETR 108 Query: 131 GLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + + I + P+ P SLN+S AV +MV+E Sbjct: 109 GLPDTVL---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 152 >gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WPS + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPSSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334] gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334] Length = 180 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134 E++ D + + A + + + +N +FGRE GL Sbjct: 73 FYESLEDF---------MSQMEGKLYLISKFAEKVYSEVDLSTDENHYFLFGREDKGLP- 122 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 123 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B str. Eklund 17B] Length = 286 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R F + + + R + SS A + RV + Sbjct: 139 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 197 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL I +L ++Y T R + + G II G E G Sbjct: 198 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGACAIIIGNEGKG 243 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + + +I P+ SLN S A ++++E ++ + Sbjct: 244 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 285 >gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea 34H] gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 235 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R ++ + V W SE+A +A + ID +AI Sbjct: 30 SHNLAAVVRTCDAIGISDVHAV-----WKSEEAEVRGGSAAGSQNWIDVHNYHKT-ADAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A A + ++ V I + II G+E++G + E + L++ Sbjct: 84 A---------ALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 I P+ + SLN+S A ++++E + + Sbjct: 135 QHIVIPMVGMVQSLNVSVACSVVLYEAQRQRAAAGMYDQP 174 >gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510] Length = 311 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 15/168 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L + ++ L N+G + R+ F + +V + E + +A Sbjct: 156 ELASEPSAVIVALDQVTDPHNVGAILRSAAAFG-ARAVVV--TERHAPETTGVLAKSASG 212 Query: 67 VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +++V +NL A+ DL +N F SV + L + +G+ V ++ Sbjct: 213 ALEAVPLVRVTNLARALTDLQ---------QNGFWSVGLAESGPSTLAKLDLTGKTV-LV 262 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + +AI P SLN+S A + ++E Sbjct: 263 MGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALYEVARLR 310 >gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22] gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55] Length = 229 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS + R+ ++ A V+ + +A+ Sbjct: 30 PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + AI E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLF 188 >gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18] gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 261 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +L Q N+G V R+ + + L S K + A ++D Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++S +L+ +A ++AT R L E +FG E Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638] Length = 229 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +++A +V+ + EA+A Sbjct: 30 PHNVSAIVRTADAVGVHEVHAV-----WPGNRLRTMASSAAGSNSWVTVKTHPTISEAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L A + L+ + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 QLK------ASGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + K P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERKNSMLPEEEQQRLLF 188 >gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 157 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella dagmatis ATCC 43325] Length = 245 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L+N +++L N+G R + +V P+D S AR + A Sbjct: 89 LKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLSSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 VI +RV +NL + DL N +N V EA L + +G + ++ Sbjct: 147 EVIPLIRV-TNLARTLRDLQ--------NEHNIWVVGTAGEATETLYQAKLTGG-LALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245 >gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 158 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKR 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + R + F L K + G ++FG E G+ Sbjct: 60 HKTFEAFLQ--------SERPKRLF--ALTTKGTPAHSQVQFELGDY--LMFGPESRGIP 107 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S +V + V+E Sbjct: 108 MSILNSLAAEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQ 147 >gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 162 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N L LV P + + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++ DL ++A TT ++ + + P + +FG E Sbjct: 61 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183 GL E E + P+ P SLN+S AV + V+E +NS ++ + Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQPA 162 >gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 2_1_33B] Length = 248 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 30/182 (16%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P + K P I+L V N G +AR + + + + A Sbjct: 87 PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDAIVIPAKGSVSVNADAIK 141 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115 +SA A V+ + ++ + I L ++A + E A + Sbjct: 142 TSAGALHVLPVCK-EKSINQVIRFLQQSGVKVFAAS--------------EKAAENYTAV 186 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V I+ G E G++ E + + + ++ P SLN+S A ++V+E + + Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246 Query: 176 SE 177 + Sbjct: 247 QQ 248 >gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R + N +L L+ P +K + + +V N Sbjct: 4 IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + EA+ + TT +R S L K Q+ ++FG E GL Sbjct: 63 FEAFLEAMDGKRIMACTTKGSR--PHSELTFK-------------QDDVLLFGPESRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + + P+ SLN+S AV ++ +E Sbjct: 108 ADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147 >gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 229 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 189 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N L LV P + + + V Sbjct: 31 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 87 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++ DL ++A TT ++ + + P + +FG E Sbjct: 88 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 132 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183 GL E E + P+ P SLN+S AV + V+E +NS ++ + Sbjct: 133 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQPA 189 >gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +P++ N G + R + L LV P S+K + + ++ Sbjct: 5 IVLFEPEIPNNTGNIGRLSLASG-SHLHLVKPFGFELSDKRVKRA--GLDYWQHISLTIY 61 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++++ +D F+Y ++ + I N+ +IFG+E G Sbjct: 62 DSIEDFYLKNSDKEFVYFSS---------------HGDKTHWDIDFKDNLFLIFGKESKG 106 Query: 132 LTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 L E A SN++ P+ + SLN++ AV ++V+E + Sbjct: 107 LPEEITAQNSNSLYKIPLHSDHVRSLNLANAVSIVVYEGLRQ 148 >gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus F0309] Length = 246 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S +++L + N+G + R F + V S K SSA + I Sbjct: 80 EPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHI 139 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V V + +A A +H + T+ + S L + ++ R Q+ + Sbjct: 140 P-VCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQG----VSARSRLSQSHAWV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 FG E GL+ +E+ L + ++S P+ SLN++ A ++ Sbjct: 195 FGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLF 236 >gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4] gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4] Length = 157 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 19/164 (11%) Query: 14 GPVIILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G I+L P++ N G +AR N T L L+ P +K + SV Sbjct: 2 GLHIVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRAGC--DYWPSV 56 Query: 72 RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + +L+E + D F + + ++ +FGRE Sbjct: 57 DIHYYDSLEE-LFD--------TYKEGEFYFIETVGTKNFSEFDYSDDNKDHFFVFGRET 107 Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + I + P SLN+S ++++E + Sbjct: 108 TGIPQDIIDRNLDRCFRIPQTDKVRSLNVSNTAAIVIYEAIRQQ 151 >gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 167 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V +E + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1] gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1] Length = 168 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 15/170 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV P + +N G + R ++L ++ P +K + D + D + ++ Sbjct: 4 IVLVHPAIPQNTGNIMRTCVAT-HSKLHIIKPMGFSLDDKHMKRA-GLDYIKDLEMEIYE 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N +E + T + ++ S Q+ I+FG E G+ ++ Sbjct: 62 NWEEFV---------TQNPGDY--HFFTRYSKLCYTDQNYVSDQDQYILFGHEHDGIPHD 110 Query: 136 EI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + + + P++ SLN+S V + ++E + V+ Q Sbjct: 111 ILKDHLDECVRIPMDGNARSLNLSNCVAIGIYEVLRQQNYPKLSKVEVQK 160 >gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter propionicigenes WB4] gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter propionicigenes WB4] Length = 255 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 29/170 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRV 73 +++L N G +AR + +V P G S A +SA A + S+ V Sbjct: 106 IVVLDGVTDVRNFGAIARTCECAGVD--AIVIPTKGGASITGDAIKTSAGA---LLSIPV 160 Query: 74 F--SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 NL A+ + + A+ E A + + II G Sbjct: 161 CREENLGNALKFIVSSGIKLVAAS---------------EKATKNYTEAALTEPIAIIMG 205 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G+ + + L + ++S P+ SLN+S A ++++E + +++ Sbjct: 206 AEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAGVLIYEAVRQRQINA 255 >gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM 4810] gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM 4810] Length = 155 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 + L +P + N G R L L+ P G+ E A+ A D + VR+ + Sbjct: 4 VFLHEPVIAGNTGNAIRLSAVTG-AHLHLIEPL-GFDFEDAKLRRAGLDYHDLADVRLHA 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ A+A + ++A ++ F S+ +E ++FG E GL Sbjct: 62 DIDTALAAVPQARVFAFSSHTDVTFDSIDYTRED--------------VLLFGTEPTGLP 107 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E ++ + + P+ P SLN++ AV + V+E Sbjct: 108 EEVMSHPRITSRVRIPMLPARRSLNLANAVSVAVYEAWRQ 147 >gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM 6946] gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM 6946] Length = 156 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV PQ+ +N G + R N + + L +V P S+K + + V V+ + Sbjct: 4 IVLVHPQIPQNTGSIGRMCVNADCS-LHIVKPTMFEISDKTVKRAGLDYWHLLDVHVYES 62 Query: 77 LKEAI---ADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L++ + AD F +ATT + +G + FG E G Sbjct: 63 LEDFLKMHADKVERFFFATTKTKK-------------PYFEASFQAGD--FLFFGGESTG 107 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + L I+ P+ SLN + + +++++ + Sbjct: 108 LPMELMQLKWENAITIPMGKNGRSLNQATSAGIILYDAIRQ 148 >gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] Length = 156 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 25/161 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVFS 75 +LV+PQ+ N G + R N + L ++ P EKA + + V+ Sbjct: 5 VLVNPQIPNNTGAIGRLCVNAGAS-LHIIKPIAFDIDEKAVRRA--GLDYWHKLDLHVWE 61 Query: 76 NLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L++ + + I +ATT ++ F E FS + I FG E G Sbjct: 62 SLEDFFKNNNIINNAHFATTKTDKPYF--------------EANFSDGDY-IFFGSETAG 106 Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + I+ P+ SLN++ + ++++E + Sbjct: 107 IPEEILTKYKEQNITIPMTKEGRSLNLAISTGIVLYEAIRQ 147 >gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 158 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 29/174 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N L LV P +K + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCI-LHLVEPLGFSMEDKLMKRA--GLDYHEYAEVRQH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++A + ++A TT ++S+ P + +FG E Sbjct: 61 AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDW---------------FVFGAES 105 Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 GL E + + P+ P SLN+S AV + V+E + + + Sbjct: 106 RGLPPELRDAFPPAQRL-RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158 >gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae B728a] gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae B728a] gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLKEAIADLH--FIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + + ++A TT +R + P + +FG E G Sbjct: 61 ADLASCLEKIGNPRVFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 24/179 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M A + S ++L +P++ N G V R N + L L+ P G+ + AR Sbjct: 1 MPSEAYVAEGSTSWLDVVLFEPEIPPNTGNVIRLCANTGVV-LHLIEPL-GFAWDDARLR 58 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A + RV + + ++A+ + + A T + E R Sbjct: 59 RAG-LDYWEFARVRRHEQWQDCRKALGE-RRVLAFTTKA-----------EPGSFARARF 105 Query: 116 FSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G ++FG E GL + + + + P+ P S+N+S +V + V+E Sbjct: 106 APGD--VLLFGPETRGLPADLLNQFPAEQKLRLPMRPGSRSMNLSNSVAVAVFEAWRQQ 162 >gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Hungary19A-6] Length = 167 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V +E + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae CDC3059-06] gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Taiwan19F-14] gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae CDC3059-06] gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus pneumoniae Taiwan19F-14] Length = 167 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134 E++ D + + A + + + ++ +FGRE GL Sbjct: 60 FYESLEDF---------MSQMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 178 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +I+L + + N+G V R F + ++ L P + ++ A Sbjct: 20 EAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATD-- 77 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFS--GQNVGIIF 125 + +++ A + + + V A ++ V+ ++ G+ ++F Sbjct: 78 --AVTWEYVED-------SIALVRKLKEDGVHVCAIEQAEGAVMLDKFVPTTGEKYAVVF 128 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E ++LSN +I P SLNIS + +++W+ Sbjct: 129 GNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWDLFS 173 >gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 156 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6] gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + L TT +R P A + +FG E G Sbjct: 61 ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFA-------EGDAFLFGPESRG 105 Query: 132 LTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + AL + + P+ SLN+S V + V+E Sbjct: 106 LPAEVLDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147 >gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185] Length = 175 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + N +A+ +L R + E +I+L+E + + Sbjct: 73 GAEFTVDW-KYVDNAVDAVDNL--------RKAGYMVYSVEQAEGSIMLDELELDKSKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium cellulovorans 743B] gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B] Length = 160 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 31/169 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + I+L P++ +N G + R N ++L L+ P ++K + Sbjct: 6 ENINIVLYQPEIPQNTGNIVRTCVLTN---SKLHLIRPLGFEVTDKQLRRA--GLDYWKD 60 Query: 71 VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + F L+E D F Y+TT + + + Q I+F Sbjct: 61 ADISYYDSFEELREKFKDRTFYYSTTKATKYY---------------DEVDFKQGDFIVF 105 Query: 126 GRERWGLTNEEIALS--NAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GRE GL +EI S + +I P+ SLN+S V ++ +E Sbjct: 106 GRESSGLP-DEIRNSEPDNLIRIPMVKTSLRSLNLSNTVSIVSYEATRQ 153 >gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25] gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + L TT +R P A + +FG E G Sbjct: 61 ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFA-------EGDAFLFGPESRG 105 Query: 132 LTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + AL + + P+ SLN+S V + V+E Sbjct: 106 LPAEVLDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147 >gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 184 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D ++ + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + R K + E + + +FGRE GL Sbjct: 79 ESLDNFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180 >gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E I + TT +R + P + +FG E G Sbjct: 61 PDLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989] gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989] Length = 173 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 26/182 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75 ++L +P++ +N G + R ++L L+ P G+ ++ + D + D+ + + Sbjct: 4 VVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPL-GFSLDEKHLRRSGMDYIKDADIHIHK 61 Query: 76 NLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N +A+ Y T + KE +V ++ G+E G+ Sbjct: 62 NWDAFVAENPCEHYYFMTRYGKKAPSEFDFAKEEG-----------DVYLVLGKESTGVD 110 Query: 134 NEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + + + + P+ SLN+S ++V+E + +T EL Sbjct: 111 KKILKGHLDTCMRLPMVANARSLNLSNCAAIIVYEVLRQLDYPG---------LSTHEEL 161 Query: 193 LS 194 Sbjct: 162 KG 163 >gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans ATCC 10379] gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans ATCC 10379] Length = 157 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G +AR N T+L L+ P +K + + + Sbjct: 4 IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLV 58 Query: 73 VFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V+ + E A D H+ T + K+ +++ IFGRE Sbjct: 59 VWDSFDEFLEATNDKHYYLIT----KFGTKNYCDFDF-------SNTDNEDIYFIFGRET 107 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E E S + P++ SLN+S L+++E + Sbjct: 108 KGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151 >gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM 17393] Length = 246 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 28/176 (15%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P+ ++ V N G +AR + + + + A Sbjct: 88 PFLFEEGKNPLFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPAKGSVTVNADAMK 142 Query: 60 SSANADCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +SA A V+ R + + D F I A T E + Sbjct: 143 TSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKAD 188 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ E +AL + + P+ SLN+S A ++++E ++ Sbjct: 189 YTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 174 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 18/162 (11%) Query: 17 IILVDPQLGENIGMVARAM-WNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 I+L P++ N G + R ++L ++ P + + SA A ++ V Sbjct: 4 IVLYQPEIPPNTGNIIRTCFATS--SKLHIIKPIAFDLNPRFLKRSA-AGHLLSEIQHEV 60 Query: 74 FSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + +A + Y T R + KS + + +++ +FG E Sbjct: 61 HDSYNDFLAKYQNENIFYIT----RYSQKSYSDIDFKLETFDGK----KDIFFVFGTEST 112 Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + ++ + + P+ P SLN++ +V+++++EC+ Sbjct: 113 GIPKKILSQNIDKTLRIPMAPENRSLNLANSVVVIIYECLRQ 154 >gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium glomerans PW2] Length = 284 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N G + R+ + + + R A +SA A + RV + Sbjct: 130 VVVLDHVTDEGNFGAIVRSAEVVGAAGVIIASKRAAAVGVGAYKTSAGAVMHLPIARVPN 189 Query: 76 NLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ EA+ F + T E A + ++ G E GL Sbjct: 190 IVRALEALKGAGFWVGGAT--------------EHARDTVWDASLEGRIALVAGSEGSGL 235 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + + + P SLN++QA ++ +E + S E Sbjct: 236 SRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRRETASGEGT 282 >gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 254 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 25/180 (13%) Query: 2 TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEK 56 P +++ AK P+++L N+G +AR F + + + P P E Sbjct: 83 APLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIII--PAHASAALPGES 140 Query: 57 ARSSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110 A + V R + L+EA + A T R L Sbjct: 141 AHRIAEGGLEHLTLWRVPTLARFCAELREA--GYEVVGAAT-RGGALTLPALT------- 190 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G ++ G E GL E +++ P + SLN+S A ++++ ++ Sbjct: 191 --GGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 248 >gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 157 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + + A + + ++FG E GL Sbjct: 54 FTAVVRHHDYAAFL---ESEKPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 151 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E I + TT +R + P + +FG E G Sbjct: 61 PDLASCMEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424] Length = 265 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + QL L + + K +SA + +RV NL I Sbjct: 120 QDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVP-MRVSDNLGALIE 178 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + T + + + + I+ G E GLT E ++ Sbjct: 179 GYKRQQVQVIGTLPQGNKTYWEIDFTR--------------PTLILLGNEGAGLTPELVS 224 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 L + ++ P+ SLN++ A L+++E ++ Sbjct: 225 LVDQQVTIPLGGGVESLNVAIAAALLLYEAKRQKQLT 261 >gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 153 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 27/162 (16%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDS 70 I+L P++ +N G +AR N + L L+ P +K + D ++ Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTN---STLHLIKPMGFKIDDKQVKRA-GLDYWSELKLEM 60 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + D ATT V + + + I+FGRE Sbjct: 61 HESYEEFMKKYGDKRIFLATT---------------HGGVHYDEVSFKEGDFIMFGRESS 105 Query: 131 GLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 G+ EE+ S+ I P+ SLN+S V ++ +E + Sbjct: 106 GVP-EEVHNSHEGIRVPMIKTSTRSLNLSNTVAIVAYEALRQ 146 >gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 229 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 261 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A + Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167 Query: 73 VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R +E VL G +FG E Sbjct: 168 IYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKYVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014 str. F0314] Length = 262 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 16/168 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVID 69 G ++L Q N+G V R+ + L + + D W S K ++ A ++ Sbjct: 109 PVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVW-SPKVLRAAMGAHFLLK 167 Query: 70 SVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L + I+ ++AT ++NN + Q+ IFG E Sbjct: 168 IHTEVR-LAQWISSYRDKVWATALHHQNNHNLYN------------LDLHQSAAWIFGNE 214 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ + + + + P+ SLN++ A + ++E M Sbjct: 215 GSGVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQRQAEQ 262 >gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii DSM 22836] Length = 246 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 24/173 (13%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P I +L N G +AR + + + + A +SA A Sbjct: 87 PFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAGVDAIVIPAKGSVTVNADAIKTSAGA 146 Query: 65 DCVIDSVRVFS--NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + V +L AI L + A T R +++ +V Sbjct: 147 ---LLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGADDYTAVDY--------------S 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + G E G++N+ + +++ ++ P SLN+S A ++++E + Sbjct: 190 GPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242 >gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp. Re1] Length = 250 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 18/168 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + +N+G + R + + R + S+ A + RV + Sbjct: 98 ILILNELTDPQNLGSIIRTADGMGAHGIIIPKNRACGITPTVAKISSGAVEYVKVARVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +I A +N F+ L ++ ++ G E GL Sbjct: 158 IARTIDELKKEGLWIIGADAEGKNYFEVDLT---------------GSIALVIGGEDKGL 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ P+ SLN + A ++ ++ + I S + + Sbjct: 203 GKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQRITSHGQTI 250 >gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L++PQ+ N G + R N ++L LV ++K + + V+ N Sbjct: 7 VVLIEPQIPYNTGNIGRLCVATN-SKLHLVGKLGFSLNDKYLKRAGLDYWSLLDYEVYKN 65 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ + +N + + A L + + +IFG E +G+ E Sbjct: 66 FEDFLE------------KNEGGRFIFVEFPAFKLYTEVSYQEGDYLIFGAEDYGIPREI 113 Query: 137 IALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171 I +S P+ SLN+S +V ++V+E + Sbjct: 114 IER--YWENSVSIPMFGPVRSLNLSSSVAIVVYEALRQ 149 >gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758] gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758] Length = 165 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N T+L L+ P +EK + + + V Sbjct: 4 IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRA--GMDYWEHLDVTTY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E ATT + L + + I+FG+E G Sbjct: 61 IDYRDFMEKNPGAKIYMATT---------------KSPNLYTDVKYEPDCYIMFGKESAG 105 Query: 132 LTNEEIALSNA---IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + EEI L + I P+ SLN+ +V ++++E + Sbjct: 106 IP-EEI-LCHHKKDSIRIPMIGDIRSLNLGNSVAIVLYEALRQ 146 >gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis DSM 2588] Length = 263 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG +AR+ + + P G +E+A SSA A I SV ++L +AI L Sbjct: 127 NIGAIARSAVCCGAQAIII--PDRGIAALNEEAIKSSAGALETI-SVCRVNSLLKAIDTL 183 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 H N V+A + A + V +I G E G+ I S+ + Sbjct: 184 HL----------NGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLF 233 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174 P+ F S N+S A ++++E M+ Sbjct: 234 HIPMAGNFESFNVSVAAGIILYEAMKQRGA 263 >gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 152 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N + L L++P EK + + + Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LYLIHPLGFSLDEKRLQRA--GLDYREWATIIHY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F K A A+ H I+A T + + + V + +FG E G Sbjct: 61 DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + I P+ S+N++ V ++++E Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 246 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEEGKSPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAGA 147 Query: 65 DCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + + D F I A T E + + Sbjct: 148 LHTLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKADYTGPM 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 194 CIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244 >gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 157 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K +G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQNGDY--LMFGPETRGLPASI 110 Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALSKEQKIRIPMMPNSRSMNLSNAVSVVVYEAWRQ 147 >gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 156 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G + R N QL L+ P G+P + A+ A D +V Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPL-GFPLDDAKMRRAG-LDYHDYATMQVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 D AT + L + + G +FG E GL Sbjct: 61 P-------DWSRFIAT-VQPDPQRMFALTTHGSTPFATGQFRPGD--VFVFGSETKGLDP 110 Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + I P+ P SLN+S V ++V+E Sbjct: 111 ALRESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 149 >gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 229 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 18/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +++A V+ + +A+ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASSAAGSNSWVQVKTHLTIGDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T ++R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 84 -------THLKSRGMQVLATHLSDKAVDFRE-IDYMRPTCILMGQEKTGITQEALDLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + P + E L Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYRRENSMLP--QEEQQRLL 187 >gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] Length = 229 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS + R+ ++ A V+ + +A+ Sbjct: 30 PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + AI E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPQEQQRLLF 188 >gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei VT8] Length = 154 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L +P++ N G + R N QL L+ P +K + + ++ Sbjct: 4 VVLYEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSLEDKQMRRA--GLDYSEYATVKIH 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A TT +R+ E F + ++FG E G Sbjct: 61 PDYDSFLATEQPSRLFGLTTKGSRHYH--------------EVAFRDGDY-LMFGPETRG 105 Query: 132 LTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E++ + + P+ P SLN+S L+V+E Sbjct: 106 LP-EDVRNGLPAEHRLRVPMRPESRSLNLSNTAALVVYEAWRQ 147 >gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 229 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 293 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G + R F + V S K SSA + + V + + Sbjct: 125 VVIAQGRDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLP-VCLVPS 183 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 EA +H + T+ + + + L + ++ R Q+ FG E GL Sbjct: 184 FAEARDLIHGRGAALLGTSGGSGSLDLADLLVEG----ISSRSRLSQSHAWAFGNEARGL 239 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + EE+ + +++ P+ SLN++ A ++ Sbjct: 240 SAEEMRACDGLVAIPMTGRAESLNVASAAATCLF 273 >gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 305] gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106b] gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106a] gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 305] gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia pseudomallei 1106b] Length = 179 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 ++LV+P++ N G V R N +L L+ P G+P + A+ A D +RV Sbjct: 27 VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 84 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A D ++A T R F +R F + +FG E G Sbjct: 85 DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 130 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + P+ P SLN+S V ++V+E + Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173 >gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 277 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 15/173 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59 M P+ LQ S P++I+ + N+G + R + L +V +PR + Sbjct: 117 MVPWN-SLQTSETNPILIIEGVEKPGNLGTILRTAEGAGVG-LVIVTDPRIDLFNPNVVR 174 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +S +F L I DL + T + + + + P+ L + + Sbjct: 175 ASTG--------TIF-TLPVYIGDLTEVL-TEFKKQGYKRYAVTPE--GKTLYTSVNLKE 222 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E++GL+ L++ + P+ SLN++ + ++++E + Sbjct: 223 KSVFLFGSEQYGLSPLAKELADTTLYLPMFGEADSLNLAMSCGIVLYESIRQR 275 >gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244] gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 248 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 +Q S ++ L N+G R + Q +V PRD + AR +A Sbjct: 91 MQQSPNALLLALDQVTDPHNLGACIRTAAAMGV-QAVIV-PRDRAASLTPTARKVAAGGA 148 Query: 66 CVIDSVRVFSNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + ++V +NL +A L + T +L E A+ + + FSG Sbjct: 149 EKVKFIQV-TNLARTLAHLKDTTHTRVIGT----------MLD--EKALPIQQCDFSG-P 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E GL + + + P++ SLN+S A + ++E Sbjct: 195 VVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246 >gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72] Length = 167 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + +++ + E + + +FGRE GL Sbjct: 62 ESLDDFMEQM-----------EGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 110 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163 >gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis PB1/+] Length = 162 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 36/170 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66 I+L +P++ N G + R N QL L+ P +K + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 62 Query: 67 V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +DS ++ S L ++A T + P +A + N + Sbjct: 63 YQAFLDSEKLDST------QLARLFALTTKG--------TPAHSA------VSYQANDYL 102 Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL + + I P+ S+N+S AV ++V+E Sbjct: 103 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152 >gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 246 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 21/170 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANAD 65 ++ SA ++IL N+G R + +V P+D + R + A Sbjct: 91 IKKSATPFLLILDGVTDPHNLGACLRTADAAGID--AIVVPKDNSVALTPVVRKVACGAA 148 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 +I ++V + L+E ++ T A + Sbjct: 149 DLIPLIQVTNLARTLREIKDAGVWVVGTAG--------------EATQSIYDCKMQGPIA 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +I P+ SLN+S A + ++E + Sbjct: 195 LVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEIVRQR 244 >gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 167 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V +E + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAENVYSEVDLSTDEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13] gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B] Length = 176 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 13/173 (7%) Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +TP A + S K P +++L + N+G V R F + + L P+ + Sbjct: 12 LTPEA--FKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118 ++ A+ +D F + EA+ L R + E +++L+ ++ Sbjct: 70 TALGAEETVDW-EYFKDTPEAVDKL--------RQEGYTVCAVEQAEGSVMLDNLQLDKT 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E G+ + + I P SLN+S +++W+ + Sbjct: 121 KKYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQ 173 >gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72] gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72] Length = 177 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL +P++ N G + R N L LV P ++KA + + + V V ++ Sbjct: 17 IILFEPEIPPNTGNIIRLAANTGCH-LHLVEPLGFVLTDKALARAGLDYHDLARVTVHTD 75 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 A L ++A T R + +V +FG E GL Sbjct: 76 WPACRAFLGERRVFALTTRAQRRHDTVDFR--------------PGDAFLFGPESRGLPP 121 Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 E E + P+ P S+N+S AV +MV+E + + Sbjct: 122 ELRESLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQQDFVGAGDGPQSLP 174 >gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f. nagariensis] Length = 429 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANA 64 + G ++++ P+ +G VARA +F LR+V PR A+S+S A Sbjct: 51 EPPALLDGVTVVIISPRKPVTVGTVARACGSFECEDLRIVMPRQESYITRRHAKSASKGA 110 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101 ++ + ++ +A AD A T ++ + V Sbjct: 111 QYILYRAAHYDSIAQATADCEVRIAFTRWSQASSPHV 147 Score = 43.1 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 14/84 (16%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSS 176 V ++FGRE G+++EE+ SL++S AV + +++ N + + Sbjct: 354 RVALVFGREELGMSDEEVDSCEE-----------SLSLSHAVSIALCTLYQARLNHLTGA 402 Query: 177 EKNVKEQNTPATKGELLSFLDYLE 200 A L +L Sbjct: 403 AGEQAIAAAAAAGEAQLLLQPHLH 426 >gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 16/169 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 I P+ + SLN+S A L+++E + + P + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQ 184 >gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 229 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94] Length = 229 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ ++E + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSMLPEAEQQHLLFE 189 >gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644] gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644] Length = 178 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 34/189 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVIDSV 71 I+LV P++ N G + R T L LV P +++ + A+ D Sbjct: 8 IVLVHPEIAPNTGAIGRTCVGVGAT-LWLVRPMGFQINDRHLKRAGLDYWAHLDW----- 61 Query: 72 RVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R+ NL+E + ++ +AR + + +IFG E Sbjct: 62 RIVENLEEIVERFGWDRLWFFSARGGRPY--------------ASLNYQPGDALIFGSES 107 Query: 130 WGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182 GL + +S P+ P LN+S AV + +E + +V E + Sbjct: 108 RGLPLEWRARAEAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQFQARGLVDFESLQVQ 167 Query: 183 QNTPATKGE 191 + A E Sbjct: 168 DDPIAPFEE 176 >gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 154 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ TT K N + G ++FG E GL Sbjct: 63 FAAFMEAMQGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E IA + P+ P SLN+S AV ++ +E Sbjct: 108 AEFIASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147 >gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda ATCC 23685] gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda ATCC 23685] Length = 157 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L L+ P +K + +R + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRAGLDYHEFADIRRHHD 62 Query: 77 LKEAIA-DL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +A + ++A T + P +A+ +G ++FG E GL Sbjct: 63 YATFLASECPQRLFALTTKG--------TPAHSAV----SYQAGDY--LLFGPETRGLPA 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 109 TILDNLPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQ 147 >gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542] gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542] Length = 157 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 23/170 (13%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+ +P++ +N G R L LV P SE + + + V Sbjct: 5 PSIVFHEPRIPQNTGNAIRLAAVTGAA-LHLVEPLGFDLSEPKLKRAGLDYHDLAHLTVQ 63 Query: 75 SNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L+ +A F + T A R + ++FG E Sbjct: 64 PDLETLLASAPDARVFAFTTKATTRYSDVEYRPSDL----------------LVFGPEPT 107 Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL++E +A + P+ P SLN++ + ++++E + Sbjct: 108 GLSDEVLAHPRITDQVKIPMLPSRRSLNLTSSASIVIYEAWRQLGFPGGE 157 >gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 229 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGREMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188 >gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 23/171 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKR 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + AT K + A + ++ ++FG E G+ Sbjct: 60 HKTFE-------TFLAT-----EQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIP 107 Query: 134 N---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + ++ I P+ S+N+S +V + V+E N+ Sbjct: 108 MSILDSLPMAQKI-RIPMTENSRSMNLSNSVAVAVYEAWRQLGYGGAVNLP 157 >gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 184 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D ++ + Sbjct: 22 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + + + R K + E + + +FGRE GL Sbjct: 79 ERLDDFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 126 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + + E Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLIHEYEA 180 >gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 178 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 16/164 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++IL + + N+G R F LT++ L P ++ ++ A +D Sbjct: 22 QEKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGATESVD 81 Query: 70 SVRVFSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIF 125 E + D + A A VLA ++A + + + ++F Sbjct: 82 W--------EYVEDPCAAVQALQA----AGWQVLAVEQAENSTSLEQYTPPPNAKLAVVF 129 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E G+++E + + + + P SLNI+ V ++VWE Sbjct: 130 GNEVSGVSDEVMDIVDGALEIPQYGTKHSLNIAVCVGIVVWELF 173 >gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae GA41301] Length = 167 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134 E++ D + + A + + + ++ +FGRE GL Sbjct: 60 FYESLEDF---------MSQIKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B] Length = 196 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 23/181 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 N+ + R+ F + ++ L+ +P + SS +A ++++R +L ++ Sbjct: 34 PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETIRHPDAASLAASLK 92 Query: 83 D--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + E A L + +G V II G E G+ + Sbjct: 93 GQGYTLVATLCS-------------ETARPLQDWDLTG-KVAIILGNEHRGVDEDLAPHV 138 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 + + P+ + SLN+S A ++++E + + EL E Sbjct: 139 DGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAAGRYDTPSLPP----AELARLAGEWE 194 Query: 201 I 201 Sbjct: 195 Q 195 >gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19] gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3] Length = 176 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 13/173 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +TP A + S K P+I+++D N +G V R F + + L P+ + Sbjct: 12 LTPEA--FKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118 ++ A+ +D F + EA+ L R + E +++L+ ++ Sbjct: 70 TALGAEETVDW-EYFKDTPEAVDKL--------RQEGYTVCAVEQAEGSVMLDNLQLDKT 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E G+ + + I P SLN+S +++W+ + Sbjct: 121 KKYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQ 173 >gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 236 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 27/169 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +PQ+ N G +AR N T L L+ P +K + V + Sbjct: 73 IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 129 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRER 129 + + + + + + + A + + + + IFG+E Sbjct: 130 KDLATFMDFLGE---------------RPLYLISKFANRVYSDVDYTADDDQFFIFGKET 174 Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176 GL + + + P+N SLN+S L+++E + Sbjct: 175 TGLPESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQ 223 >gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 162 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N L LV P + + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++ DL ++A TT ++ + + P + +FG E Sbjct: 61 PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183 GL E E + P+ P SLN+S AV + V+E +NS ++ + Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPSTQTQPA 162 >gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354] gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019] gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 129PT] gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus 2336] gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT] gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus 2336] Length = 245 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 24/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 LQ A +++L N+G R+ + +V P+D + AR + A Sbjct: 89 LQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA-VIV-PKDKSAQLTAIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V+ VRV +NL + DL ++ T AI Sbjct: 147 EVVPLVRV-TNLARTLRDLQQQHNIWVVGTAG--------------EAIETLYEAKLTGG 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 LALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQRL 244 >gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM 9946] Length = 228 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 24/205 (11%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP Q+ + + +L++ N V R+ + + L+ G P+E Sbjct: 1 MTPERWQKIQQVLARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTE 60 Query: 56 K-------ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108 A +S + A V +R + + A ADL R+R A Sbjct: 61 DQNPSRHTAATSGSAAKWV--GLRTYPDTPSAFADL--------RSRGFVIYAAHFSHKA 110 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 I E + + I+ G E+WG+T E L++ I P+ + SLN+S A ++++E Sbjct: 111 IDYRE-VDYTRPTCILLGTEKWGVTEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEA 169 Query: 169 MENSIVSSEKNVKEQNTPATKGELL 193 I + + + + PA LL Sbjct: 170 QRQRIQAGMYD-RPRLEPALHQRLL 193 >gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum NCIB 8327] Length = 257 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ ++IL + N+G + R + ++ + S +SA A Sbjct: 101 AAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADSVIMIEGKGAPISATVHKASAGA-- 158 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +RV +K + L + S++A A + I + ++ G Sbjct: 159 -LSHMRVCK-VKSLVKTLDLL-------HERGFSIVAADMEAEHNHTDIDWKRPTVLVMG 209 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL +E + I+ P+ SLN+S A +M++E M + Sbjct: 210 AEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQRL 256 >gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205] Length = 157 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 17/163 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++L P++ N G VAR+ + T+L L+ P ++ + + Sbjct: 2 PRVVLFQPEIPPNTGNVARSCAA-SCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +N ++ + + R +LA A RI + ++FGRE GL Sbjct: 61 ANWEQFLE----------KRRQRGGRLLALSRHASEPYHRIQYRADDWLLFGRESSGLPG 110 Query: 135 EEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ SLN++ +V ++++E + Sbjct: 111 ELLEHVDQRLLIPMPGSVDQGGGVRSLNLATSVGVVLFEALRQ 153 >gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM 5159] Length = 217 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 76/188 (40%), Gaps = 9/188 (4%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L + N+ V R+ L ++ LV + +P E + + S +A ++ + Sbjct: 25 TVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFP-ELSENVSGSALKWLE-LVFHP 82 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ EA T + + L + V ++FG E+ G+++E Sbjct: 83 SI-EACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTK------PVALVFGNEQRGVSDE 135 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 +A ++ P+ + SLNIS A + ++E + ++ + + + L + Sbjct: 136 AVAGADGNFVIPMMGMVRSLNISVACAVSLYEALRQRRLAGHYARPKLSPIELEERLQRW 195 Query: 196 LDYLEISL 203 L+ +L Sbjct: 196 LEREGRAL 203 >gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10] gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10] Length = 194 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66 I+L +P++ N G + R N QL L+ P +K + + Sbjct: 36 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 94 Query: 67 V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +DS ++ + + A ++A T + P +A + N + Sbjct: 95 YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 134 Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL + + I P+ S+N+S AV ++V+E Sbjct: 135 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 184 >gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT 12057] Length = 249 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 22/178 (12%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L K P+ + L N G +AR + + + + A +SA A Sbjct: 88 PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAMKTSAGA 147 Query: 65 DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R +LK + + H + AT E + Sbjct: 148 LHTLPVCR-EQSLKGTLQFLKDSGFHIVAAT---------------EKGDYDYTKADYTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ +++ Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNNANQ 249 >gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus DSM 14838] Length = 246 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 34/179 (18%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P+ ++ V N G +AR + + + + A Sbjct: 88 PFLFEEGKNPLFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPAKGSVTVNADAMK 142 Query: 60 SSANADCVI-----DSVRVF-SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 +SA A V+ +++V LK+ + + AT E Sbjct: 143 TSAGALHVLPVCREQNLKVTLQYLKD--SGFRIVAAT---------------EKGDYDYT 185 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + II G E G++ E +AL + + P+ SLN+S A ++++E ++ Sbjct: 186 KADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL F6-596] gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL F6-596] Length = 169 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + ++ E F + T + V + + + +N IFG+E Sbjct: 61 YDSIDEFFEKNQGGEFYFIT-----KFGRHVYS-------DIDYSDTSKNYFFIFGKETT 108 Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL NEE + P+ SLN+S ++ +E + Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151 >gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia K12] gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia K12] Length = 156 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 35/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G V R N T L LV P +K + +D ++ Sbjct: 4 IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAG-----LDYHE-YAT 56 Query: 77 LK-----EAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 L+ +A+ ++A T R SV E +FG Sbjct: 57 LQTHASWDALMQTLQPRPERLFAFTTRGSRLIGSVRF--EPGDY------------FVFG 102 Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL++ E+ A + + P+ SLN+S +V + V+E Sbjct: 103 AETRGLSDAVREQFAPAQRL-RLPMREGQRSLNLSNSVAVAVFEAWRQ 149 >gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 178 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 15/169 (8%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + +++ K P +IIL + + N+G V R F + ++ L P + R ++ A Sbjct: 17 EEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGA 76 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNV 121 + V A R + + +LA + E AI+LN + Sbjct: 77 TETVVWEYVNDT-----------VALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTY 125 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++FG E G+ + ++ S+A+I P SLNIS +V +++W+ Sbjct: 126 AVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWDLAM 174 >gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM 1131] Length = 226 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 24/158 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+ + R+ + Q+ WP ++ + S ++A V++ ++ +EAIA Sbjct: 19 PHNVSAIVRSADAVGIHQIH-----AIWPDQQVKLSVSSAAGSNSWVKIISHTSTEEAIA 73 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + AT N + + +E L I+ G+E+ G++ + +A Sbjct: 74 HIKSQNMQVLAT-----NLSEHAVDFREIDYTL--------PTCIMMGQEKTGISQQALA 120 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L++ I P+ + SLN+S A L+++E + Sbjct: 121 LADKHIIIPMAGMVQSLNVSVASALILYEAQRQRQQAG 158 >gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 282 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 20/180 (11%) Query: 1 MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 M P ++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 108 MLPSVEEVCREARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAV 164 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLH-FIYATTA-RNRNNFKSVLAPKEAAIVLNERIF 116 S + ++ L +++ L+ + + T A ++ S+ P A Sbjct: 165 RVSMGSVFLLPWTW----LDGSLSGLNKYGFRTAAMALSDHSISIDDPVLTAE------- 213 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ G E GL +E I ++ ++ P++ SLN++ A + W+ + + Sbjct: 214 --PKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAASAVAFWQLRAQGLRET 271 >gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431] gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327] Length = 206 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 7 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 62 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165 >gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E] Length = 245 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 24/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N+ +++L N+G R + +V P+D + AR + A Sbjct: 89 LSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V+ +RV +NL + DL ++ T A + Sbjct: 147 EVVPLIRV-TNLARTLRDLQQSHNIWVVGTAG--------------EATETLYQTKLIGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 LALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39] gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1] Length = 174 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 17/169 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 AP L ++ ++L P++ N G + R L LV P A + Sbjct: 14 APTLPDTLLH--VVLYRPEIPPNTGNIQRICAATG-AMLHLVGPIAFRLDNAALKRAGMD 70 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ + + + + ++ K R +G ++ Sbjct: 71 YRQWVDVQRYD---------DWAHCLRMQPLGVRWIPISTKATQGYHTMRYQAGDR--LL 119 Query: 125 FGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FG E GL EI + + + P+ P SLN++ V ++++E + Sbjct: 120 FGSEGSGLP-AEIHQALGHNAVRVPMLPRARSLNLANTVAVVLYEALRQ 167 >gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 294 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 21/178 (11%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP+ + ++L Q N+G V R+ + Q+ L S K + Sbjct: 136 PPVAPESPDY-----VLLDRVQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLRAG 190 Query: 62 ANADCVID-SVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A ++ RV L E A H +YAT + + L + Sbjct: 191 MGAHFLLHIQERVC--LTEWCARYPHAVYATAL---DGNRPALLYQLDLR---------A 236 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 IFG E G++ E IAL+ + P+ SLNI+QA + ++E M Sbjct: 237 PCAWIFGNEGSGVSPELIALAGRSVKIPMQGATESLNIAQAATVCLFEQMRQRWQQQP 294 >gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium ICC168] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A++ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVS 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQVLATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens] Length = 190 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G +AR+ F ++++ LV R + + ++ + R F L A+ L Sbjct: 14 HNLGTLARSATAFGVSEIILVG-RKDFN-----AFGSHGATLHLQFRHFQTLPAAVKYL- 66 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 +++N + E A +++ F+G + + G E GL+++E+ + + + Sbjct: 67 -------KDKNVSICGVEITEGAAGVHKYPFTG-STAFVLGNEGTGLSDKEMEICDFFVY 118 Query: 146 FPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 P N P SLN++ A +++ + + + ++ A + Sbjct: 119 IPQNGPGTASLNVTVAASIVLHQFAVWAEFPERERDGQKFVVADR 163 >gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106] gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 +Q + +IL D N R +F + + ++ R+ + + S ++ Sbjct: 29 VQQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSLGSHRWLT 88 Query: 65 -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + I++ ++ L++ + + I ATT P E I + E+I + Sbjct: 89 ISRYNEPKINNTKIC--LEKLKSQGYKIVATT------------PHEEEITI-EQISVEE 133 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +G++FG E GL+++ ++ ++ ++ P+ S NIS +V L ++E Sbjct: 134 KLGLMFGTELNGLSDDAVSQADYLVRIPMVGFSESFNISVSVALCLYEI 182 >gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501] Length = 292 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 12/171 (7%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + ++ PVI++ D N+G + R + + R + +A A Sbjct: 129 QAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVAAGAL 188 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV NL A+ L F E L + F G +G++ Sbjct: 189 ESFPVARVV-NLSRALETL---------KAEGFWIYGTVSEGGKRLQDFNFRGA-IGLVI 237 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL+ + ++S P+ PSLN S A + ++E Sbjct: 238 GSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQRWSEK 288 >gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 155 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 25/170 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+ +P++ N G R +L LV P G+ A+ A D + V V Sbjct: 3 RILFHEPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++A L +YA T+ I ++FGRE GL Sbjct: 61 PTLEDAWRHLQPERVYAFTS--------------DGTASYTDIAYQPGDVLMFGRESDGL 106 Query: 133 TNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 S+ ++ P+ P SLN++ A + V+E + K Sbjct: 107 PAG--VKSDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154 >gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis SK119] gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis SK119] Length = 156 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGL 132 E I + N K L K ++ FS + IFGRE GL Sbjct: 59 -TYHENIESFFEV--------TNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGL 109 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P++ SLN+S L+++E + Sbjct: 110 PDWVKEKYADTALRIPMSDHIRSLNLSNTAALLIYEALRQQ 150 >gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 230 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N + + I ++ NI V R + Q+ WP+ Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH-----AIWPTS 55 Query: 56 KARSS--SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAI 109 + ++ SA V+ +++A+ L + AT N + + +E Sbjct: 56 RMKTLVSSAAGSNSWVQVKTHRTIQDAVGHLKNEGMQVLAT-----NLSEHAVDFRE--- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187 >gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13] gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 153 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 23/160 (14%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ +N G +AR N ++L ++ P +K + + Sbjct: 5 IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ + + K + A + + + I+FGRE G+ Sbjct: 60 IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107 Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E++ ++ I + N SLN+S V ++ +E + Sbjct: 108 P-EDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQ 146 >gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas suwonensis 11-1] gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas suwonensis 11-1] Length = 158 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L P++ N G V R N +L L+ P ++ + + +V Sbjct: 8 VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFSLEDRQLRRA--GLDYHEYASLQVH 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ R K + A V +++ +FG E GL Sbjct: 65 PDLATALE------------RIAPKRLFALSTRGQVRHDQPAYADGDAFLFGCETRGLPE 112 Query: 135 EEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + + + P+ P SLN+S AV ++V+E + Sbjct: 113 DVLGSIPEAQRL-RLPMRPGNRSLNLSNAVAVLVFEAWRQHGFAGG 157 >gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1] Length = 218 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1] Length = 218 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863] gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1] gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1] gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1] Length = 218 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM 7454] gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM 7454] Length = 152 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L+ P+ N+G ++R ++L L+ P S K+ + D + V Sbjct: 4 IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKA--GIDYWDKLDLVVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E ++ K++ + + I IFGRE+ G+ Sbjct: 61 DSLDEF---FTYV---------KDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEK 108 Query: 135 EEIALS-NAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171 E + I + P+ SLN++ +V ++++E + Sbjct: 109 EILDKYKEKIYTIPMTKKLNRSLNLANSVAIVLYEGLRQ 147 >gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 179 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +I+L + + N+G V R F + ++ L P + ++ A + Sbjct: 21 EAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATDAV 80 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIF 125 V + A + R + + A + E A++L++ G+ ++F Sbjct: 81 AWEYVEDS-----------VALSQRLKEQGVKLCAIEQAEDAVMLDKFTPVKGERYAVVF 129 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E ++LS+ ++ P SLNIS + +++W+ Sbjct: 130 GNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWDIFS 174 >gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis subsp. hominis C80] gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis subsp. hominis C80] Length = 156 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGL 132 E I + N K L K ++ FS + IFGRE GL Sbjct: 59 -TYHENIESFFEV--------TNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGL 109 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P++ SLN+S L+++E + Sbjct: 110 PDWVKEKYADTTLRIPMSDHIRSLNLSNTAALLIYEALRQQ 150 >gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 157 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV P++ +N G + R + T+L LV P G+ E A D + ++ Sbjct: 6 IVLVAPEIPQNTGTIGRLCVSTE-TRLHLVRPL-GFSLEDKYVKRAGMDYWPHLDLTIYE 63 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N +E + +N ++L ++FGRE GL E Sbjct: 64 NWEEFLK------------KNPEANLLFISTKGETCFWDAQYRPGDYLVFGRESSGLPPE 111 Query: 136 EIALS-NAIISFPVNPLFP-SLNISQAVLLMVWECME 170 + + P+N F SLN++ A ++++E + Sbjct: 112 FYDRYRSRLYRIPMNGRFHRSLNLANAASIVLYEALR 148 >gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536] gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026] gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5] gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11] gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042] gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412] gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA143] gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H299] Length = 229 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato str. DC3000] Length = 151 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + AP + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFAPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis NCTC 12261] gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis NCTC 12261] Length = 167 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V ++ + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC 23834] Length = 258 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P A+ ++L Q NIG + R+ + Q+ L S K + A Sbjct: 104 PTEPFDAEADCVVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAH 163 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + V +L H TA +RN+ L +F Sbjct: 164 FAL-RLFVEPDLAAWRERCHVPLLATALHRNSVSLYD------CDLRA------PAAWLF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ +A ++ ++ P+ SLN++ A + ++E M + Sbjct: 211 GNEGAGVSETMLAAASRLVHIPMAVQTESLNVAMAATVCLFEQMRQRL 258 >gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC 49626] Length = 323 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 19/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N G + R+ + + N R A +SA A + RV S Sbjct: 172 VVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAAQVGVGAYKTSAGAVLHVPIARV-S 230 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N+ A+ +L + T E A G + ++ G E G Sbjct: 231 NVSRALEELKAAGFWTCGAT--------------EHAADDVWSAPLGGRLALVMGSEGAG 276 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + + P SLN++QA +M +E + Sbjct: 277 ISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRR 316 >gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum EbN1] gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum EbN1] Length = 154 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G R N +L LV P S++ + + + ++ V + Sbjct: 4 IVLFQPEIPPNTGNTIRLAANTG-ARLHLVRPLGFDLSDRQLARAGLDYHDLTTLTVHDD 62 Query: 77 LKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+A +T R R + + ++FGRE GL Sbjct: 63 WNACLSALAGRRLLALSTKGRTRYDLVDYR----------------ADDVLLFGRETSGL 106 Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P S+N+S AV ++V+E Sbjct: 107 PAEVLDSVPDMQTLRIPMCPANRSVNLSNAVAVVVFEAWRQ 147 >gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4] Length = 282 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 6/170 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P +L+ + V++ P N+G + R+ F + +V ++ +S Sbjct: 118 PRLKELRLQSAPLVVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAST 177 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + V S++ E +A R ++ E V + G Sbjct: 178 GSLFAMP-VVTVSSVDEILAFRD-----ARRASGTELHIVGTDETGSVTIDAHDFGGGTV 231 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ + +++ P+ SL A + ++E Sbjct: 232 LVIGNETRGMSAAWRNACDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 281 >gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. 2250] gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae FF5] gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. syringae 642] gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7] gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 151 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N T L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L E I + TT +R + P + +FG E G Sbjct: 61 ADLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105 Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + LS+ + P+ SLN+S V + V+E Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str. 2457T] gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905] gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82] gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74] gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671] gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 4343-70] gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218] gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227] Length = 206 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 7 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 62 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165 >gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135] Length = 249 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P++IL V N G +AR + + + + + A Sbjct: 88 PFLFEQGKNPLLILLDGLTDVR-----NFGAIARTCECAGVDAIIIPSKNSVSVNADAIK 142 Query: 60 SSANADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 +SA A I R +NL I + AT E + Sbjct: 143 TSAGALHTIPVCR-ENNLTNTIKFLKDSGFKIVAAT---------------EKGDYDYTK 186 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 II G E G+ + +AL + I P+ SLN+S A ++++E ++ Sbjct: 187 ADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEAVKQRGF 246 Query: 175 SSE 177 E Sbjct: 247 GEE 249 >gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis W23144] gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis W23144] Length = 156 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G +AR LT L L+ P +K + + V + Sbjct: 5 IVLYQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTEDKMLKRA--GLDYWEHVNITY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131 +++E A+ L K ++ FS ++ IFG+E G Sbjct: 61 HDSIEEFFAN------------TEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTG 108 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + + P++ SLN+S L+++E + Sbjct: 109 LPDWVKEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQ 150 >gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552] gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552] Length = 169 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV P + +N G + R N T L ++ P +K + D V D +RV+ Sbjct: 4 IVLVHPAIPQNTGNIMRTCVATN-TVLHIIKPMSFDLDDKKMKRA-GLDYVKDLDLRVYE 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +E + + HF + + + + S + + FG E G Sbjct: 62 NYEEFVRKNPGEYHFF--------TRYSHLCFTDQ------DFSDSSTDHYLFFGHEHDG 107 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + E + ++ + P++ SLN+S + ++E + + V+ Q Sbjct: 108 IPKEILTKHLDSCLRIPMSDKVRSLNLSNCAAICIYEVLRQQNYPNLSKVEVQK 161 >gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 167 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V ++ + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 250 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 74/193 (38%), Gaps = 17/193 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + ++L + N+ + R+ F ++++ L +P R +SA+A Sbjct: 71 LAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPFP-ALGRKTSASARKW 129 Query: 68 IDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++S R + L E++ + + AT+ + + + +I Sbjct: 130 VESARHKDSAALMESLRGQNMQVLATSCSP--TARPLRDWDFT-----------RPTAVI 176 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E G+ E + +++ + P+ + S N+S A +++ E + Sbjct: 177 MGNEHSGVEPELLQMADGELYIPMYGMIQSFNVSVAAAIILSEAARQREAAGMYATPRMA 236 Query: 185 TPATKGELLSFLD 197 A + +L +L+ Sbjct: 237 AAALEEKLQEWLE 249 >gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 235 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64 PQ+ G ++++ Q N+G + R+ + Q L V D + + K S+ A Sbjct: 76 PQIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLCSVGTVDVY-APKVVRSAMGA 134 Query: 65 DCVI--DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + + E +AD+ +YA P AA Q Sbjct: 135 HIRLSIEQDVRWDEIGERLADVDHVYAA-------DPHARMPYYAADWR-------QPSA 180 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E GL+ L+ I+ P+ SLN++ A ++++E + + Sbjct: 181 LLVGNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQRTLGRG 235 >gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC 700779] gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC 700779] Length = 167 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 32/167 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI------IFGRE 128 L E K + E+++S + I +FGRE Sbjct: 62 DCLDE-----------------FMKKIDGQLYLISKFAEKVYSDADFTIEGNHYFLFGRE 104 Query: 129 RWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL EE + + P+N SLN+S V ++V+E + Sbjct: 105 DKGLP-EEFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM 13528] Length = 155 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ +N G +AR ++L L+ P EK + + + Sbjct: 5 IVLFQPEIPQNTGNIARTCVLTG-SKLHLIKPLGFSLDEKHLRRA--GLDYWKYLDLTLY 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+E F ++TT + NF + G I+FGRE G Sbjct: 62 DSYEELREKYKGGTFYFSTT--HGKNFYH-----------EAKFKDGD--FIVFGRETCG 106 Query: 132 LTNEEI-----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L +EI + + SLN+S V ++ +E + Sbjct: 107 LP-DEIRDSAPEKCIRVPMIKTSTR--SLNLSNTVAIVAYEALRQ 148 >gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 153 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +I +P + N G R T L LV P +K S + V++ + Sbjct: 3 VIFDNPVIPGNTGNTIRLCAGTGFT-LHLVKPLGFLLDDKHLKRSGLDYHDLADVQIHED 61 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ A D TT R+ + ++FG E GL Sbjct: 62 IESCFASLIDARIFAFTTHTTRHYT---------------DVEYRDTDALLFGTEPTGLP 106 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + P+ P S+N++ + + +E Sbjct: 107 EEHSHHPRVTDQLRIPMLPGRRSMNLANSAAVASYEAWRQ 146 >gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM 684] Length = 158 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+LV+P++ N G +AR T L LV ++ + V + Sbjct: 8 IVLVEPEIPPNTGNIARLCA--GTQTHLHLVGKLGFSLDDRYLKRA--GLDYWPHVPLHR 63 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L++ A + + A +++ + I+FG+E GL Sbjct: 64 WDSLEQLEQ---------AYPEGRWW---YTSKTAHLVHSQATFHPGDFIVFGKETKGLP 111 Query: 134 NEEIAL-SNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E + + P++ SLN+S + ++++E + Sbjct: 112 KELLERHPQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQ 151 >gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua] gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516] gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F] gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125] gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola] gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. IP275] gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1] gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII] gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92] gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A] gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. India 195] gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516] gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM D27] gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003] gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516] gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua] gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92] gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F] gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125] gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis IP 31758] gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis Angola] gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. IP275] gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pseudotuberculosis YPIII] gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516] gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. India 195] gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A] gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004] gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038] gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM D27] gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003] gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 162 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66 I+L +P++ N G + R N QL L+ P +K + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 62 Query: 67 V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +DS ++ + + A ++A T + P +A + N + Sbjct: 63 YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 102 Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL + + I P+ S+N+S AV ++V+E Sbjct: 103 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152 >gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM 5692] Length = 152 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +P++ N G + R T L L+ P G+ E A D Sbjct: 3 IVLFEPEIPPNTGNIGRLCAAT-TTPLHLIEPL-GFRLEDRYLKRAGLDYWPHLDLTVWP 60 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +++ + A++AR + +V E I+ G E GL Sbjct: 61 DWPSFCDSLPSGARLVASSARQGAAYHTVAFRTED--------------YIVLGPESSGL 106 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ P+ SLN++ A ++++E + + Sbjct: 107 PSAICEQAAELVRIPIWGQVRSLNLANATSVLLYEALRQT 146 >gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As] Length = 156 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 35/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G V R N T L LV P +K + +D ++ Sbjct: 4 IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAG-----LDYHE-YAT 56 Query: 77 LK-----EAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 L+ +A+ ++A T R SV +FG Sbjct: 57 LQTHSSWDALMQTLQPRPERLFAFTTRGSRLIGSVRF--------------EPGDCFVFG 102 Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL++ E+ A + + P+ SLN+S +V + V+E Sbjct: 103 AETRGLSDAVREQFAPTQRL-RLPMREGQRSLNLSNSVAVAVFEAWRQ 149 >gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 154 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 25/163 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L +P++ N G + R +L LV P SE + + V V Sbjct: 3 RVMLFEPRIAGNTGSMIRVSAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVVVHP 61 Query: 76 NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L A+ + F + T+ R++ I + ++FG E G Sbjct: 62 DLATALRAVPGARVFAFTTSGSARHSD----------------IAYQEGDVLLFGPEPTG 105 Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L EE+A + + P+ SLN++ A L V+E Sbjct: 106 LP-EEVARHPRVAERLRIPMLAGRRSLNLANAATLAVYEAWRQ 147 >gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185] Length = 229 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 84 -------THLKGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972] gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1] gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1] gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1] gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1] gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1] gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1] gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3] gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1] gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3] gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2] Length = 218 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC 35316] gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cancerogenus ATCC 35316] Length = 159 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +V + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRHPD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + + A + + ++FG E GL Sbjct: 63 YAAFL------------DAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATI 110 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ P S+N+S AV ++V+E Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 267 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 15/172 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M +++ V++L N+G + R+ F L +V P P E + Sbjct: 107 MEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGA--LAVVAPDRHAPDETGTLA 164 Query: 61 --SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ A + VRV + ++ A+ D+ + F + +A L E SG Sbjct: 165 KSASGALERMPLVRVTNVVR-ALEDM---------KKGGFWTAGLAADAPKTLAEAELSG 214 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V ++ G E G+ + ++ P+ SLN+S A + ++E Sbjct: 215 -KVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEIRR 265 >gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 289 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 6/160 (3%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ + V++ P NIG +AR++ L L A +S + Sbjct: 126 LEPTGASLVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRASTGSLFA 185 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +R+ + +E + + T R +VL EA ++ G Sbjct: 186 VPVMRL-PSHREVLD-----WLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVGN 239 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E G+++ + I P+ SLN S A + ++E Sbjct: 240 ETVGMSSGWREACDVIAEIPMTGAASSLNASVAGSVALYE 279 >gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 180 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + K P V++L + + N+G V R F + + L P+ + ++ Sbjct: 13 SKEDFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTAL 72 Query: 63 NADCVIDS------VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A+ ++ +R+ L + + + E +I+L+E Sbjct: 73 GAEDSVNWKYSPITLRIVEELHQ---------------KGYQIIAVEQAEESIMLDEFQS 117 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 II G E G+ E + +A I P SLN+S +++WE +NS Sbjct: 118 KYSKQAIILGNEVHGIDQEVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNS 173 >gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis SK135] gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228] gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis RP62A] gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis SK135] gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU144] gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU045] gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU028] Length = 156 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G +AR LT L L+ P +K + + V + Sbjct: 5 IVLYQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTEDKMLKRA--GLDYWEHVNITY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131 +++E A+ L K ++ FS ++ IFG+E G Sbjct: 61 HDSIEEFFAN------------TEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTG 108 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + P++ SLN+S L+++E + Sbjct: 109 LPEWVKEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQ 150 >gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297] gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297] Length = 154 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 25/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R N QL L+ P EKA + + ++ Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSMDEKALRRA--GLDYHEFAQIRIW 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +T ++ + P + ++FG E G Sbjct: 61 PDYPTFLQQAQPPRLFALSTKGSQGYSEVAFQPGDY---------------LMFGPETRG 105 Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L + E ++ P+ SLN+S V +MV+E + S + Sbjct: 106 LPADIRESLPPEQVLRLPMLADSRSLNLSNTVAVMVYEAWRQNGFSGHR 154 >gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 181 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++IL + + N+G V R F + ++ L P+++ ++ A + Sbjct: 19 KAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGATDSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIF 125 L+ + R + V++ + E A++LN+ + + +IF Sbjct: 79 AWEYAEDTLQ--------VV---ERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E ++LS+ +I P SLN+S + +++WE + Sbjct: 128 GNEVKGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWEMTK 172 >gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In Complex With S- Adenosyl-L-Homocysteine. gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In Complex With S- Adenosyl-L-Homocysteine Length = 165 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66 I+L +P++ N G + R N QL L+ P +K + + Sbjct: 7 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 65 Query: 67 V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +DS ++ + + A ++A T + P +A + N + Sbjct: 66 YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 105 Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL + + I P+ S+N+S AV ++V+E Sbjct: 106 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 155 >gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC 35316] gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 218 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +A SV+ + +A++ Sbjct: 19 PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMVSAAAGSNSWVSVKSHQTIGDAVS 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G++ E + L++ Sbjct: 74 HL--------KGRGMQVLATNLSDKAVDFRE-IDYTRPTCILMGQEKTGISQEALDLADR 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + + + + + Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYARSSSMLPDEEQQRLLFE 178 >gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902] Length = 652 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G V R+ L L R + A +A A + RV + +L E + Sbjct: 394 PHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSL-EKL 452 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 D + + A E + L + G V ++ G E GL+ Sbjct: 453 KDSGYRVIGLAA-------------EGDVTLMDVDLEGPLV-LVTGSEDQGLSLLTRRHC 498 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++ P+ + PSLN S A L V+E + + Sbjct: 499 DQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 543 >gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 175 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + N EA+ +L ++ + E +++L+E + + Sbjct: 73 GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86] gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M605] Length = 229 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ ++E + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNTGMYLRENSMLPEAEQQRLLFE 189 >gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC 27560] Length = 255 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + +N K +++L Q N+G + R ++ + + + K S+ + Sbjct: 104 EKRNKEKSCIVVLDRLQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIF 163 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + +L A+ L TT L ++ ++ G Sbjct: 164 RVPFA-IVDDLAAAVDTLKDNGITT-----------YAAHLKGELYNSGSLTKDCALLIG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL+ E A ++ +I P++ SLN + A ++++E Sbjct: 212 NEARGLSEEISAKADKLIKIPMHGKVESLNAAIATAILMYEAAR 255 >gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20] gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021] gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW] gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127] gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A Truncated Sequence Homolog Of Trna (Guanosine-2'-O-) Methyltransferase (Spou) gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A Methyltransferase With A Cofactor Bound At A Site Formed By A Knot gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20] gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021] gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW] gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127] Length = 160 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGCPAHSQVKFKLGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp. HTCC2170] gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp. HTCC2170] Length = 150 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I+L +P++ N G + R + L LV P +K + + +F Sbjct: 5 IVLFEPEIPNNTGNIGRLALATG-SNLHLVKPFGFELDDKRLKRA--GLDYWPHISLFTY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N++E D + +Y ++ + I ++ +IFG+E G Sbjct: 62 ENIEEFYKQHNDKNLVYFSS---------------HGEKNHWSIDYKDDMYLIFGKESVG 106 Query: 132 LTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 L E + S+ + P+ + SLN++ AV + ++E + Sbjct: 107 LPKEILQNNSDKLYKIPLFSSKIRSLNLANAVGVTIYEGLRQ 148 >gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6] gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6] Length = 167 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V ++ + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)] gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)] gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)] Length = 163 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70 ++L PQ N G +AR+ FN T L L++P + +++ + D + Sbjct: 3 SKINVVLYRPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRA--GLDYWDHLN 59 Query: 71 VRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ +++ + I D + T N I E + Q + ++FG Sbjct: 60 LKQYADFDDFIKQNQIDENLFLFTKKANNYLSN---------IDFKEYLDHDQRIYLVFG 110 Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E GL ++ + + ++ P++ S N++ +V+ ++E Sbjct: 111 QETNGLPDQLLNKYQDNLVKIPMHNAIRSFNLANSVICALYELSRQ 156 >gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 269 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 23/172 (13%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP++ +A + L + + N+G + R + LV S A ++ Sbjct: 111 PPPAPKV--NAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRAT 168 Query: 62 AN---ADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A ++ R F +L+ A A + T R +F+S+ Sbjct: 169 MGSIFAVPIVKMERSAFISLQRAWAG--DVIGTHLTAREDFRSLYR-------------- 212 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL++E A ++ P+ SLN++ A LM+++ Sbjct: 213 -EPQLIVMGGEGPGLSSEAAASCTKLVKIPMAGKLDSLNLAVATGLMLYQIR 263 >gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 261 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 32/179 (17%) Query: 10 NSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADC 66 N P I++ Q NIG + RA F + LV S KA +SA + Sbjct: 104 NDLSNPTFIVIADRIQDPGNIGTIIRAAEAFG-AEAVLVTHGTCNPFSNKALRASAGSIF 162 Query: 67 VIDSVRV-FSNLKEAIA--DLHFIY----AT-TARNRNNFKSVLAPKEAAIVLNERIFSG 118 + ++V ++E ++ L+ + AT ++ N + K + Sbjct: 163 FLPVIKVTVKEIEEFVSKYGLNLVITDLKATISSFNMDFTKPL----------------- 205 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+FG E G++ + A+ + P SLN++ A +++E + + S Sbjct: 206 ---AIVFGNESKGVSQDLRAIKHTSCKIPHKGKAESLNVAMAATAILYEILRQRFLKSP 261 >gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39] gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39] Length = 167 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V ++ + + ++ +FGRE GL E Sbjct: 60 FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 110 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6] gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6] Length = 180 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +PQ+ +N G +AR N + L ++ P ++ + D + ++ Sbjct: 18 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 72 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 E++ D ++ K L K A V ++ + + ++ +FGRE GL E Sbjct: 73 FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 123 Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + P+N SLN+S V ++V+E + Sbjct: 124 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163 >gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR] Length = 215 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 16/153 (10%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIAD 83 N+ V R+ + ++ W ++KAR S A + V++ + + EA+ Sbjct: 20 HNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGSQNWVKIHNHKTVGEALE- 73 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 AT R + L+ E ++ E + + I+ G+E++G+T+E + +++ Sbjct: 74 -----ATQGRGMQVVVTHLS--EHSVDFRE-VDYTKPTAILLGQEKYGVTDEALDIADYH 125 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ + SLN+S A +M++E + Sbjct: 126 VMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 158 >gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC 43183] Length = 176 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 11/168 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 14 STEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTAL 73 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + +N EA+ +L +N + E +I+LNE + Sbjct: 74 GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKNRKY 124 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172 >gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA] Length = 176 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P ++L + + NIG V R F + + L P + ++ Sbjct: 14 STEEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 73 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + +N EA+ +L +N + E +I+LNE + Sbjct: 74 GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKY 124 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172 >gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073] gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89] gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1] gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88] gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a] gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B] gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736] gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A] gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82] gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15] gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034] gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1] gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101] gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU 83972] gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146] gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252] gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263] gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H736] gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli M718] gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA206] Length = 229 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523] Length = 250 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q NIG + R L ++ L+N + KA + A + FS Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSLK----FS 160 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L E +ADL I K L + + F N ++FG E G+ + Sbjct: 161 YL-ETLADLKNI-----SKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I P SLN++QA + ++E + + Sbjct: 215 SIG---EKTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus neapolitanus c2] Length = 268 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 16/168 (9%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 L ++ P IL N+G R+ + +++P+D + AR +++ Sbjct: 99 ALLDNLDEPAFLLILDGVTDPHNLGACLRSAEAAGVH--AVISPKDRAVGLTPTARKAAS 156 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + ++V +NL +ADL V A + L E F+ ++V Sbjct: 157 GAAERLPFIQV-TNLARTLADL---------KSRQIWIVGAAGGGMVSLYESDFAAESVA 206 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GL + +I P+ P SLN+S A + ++E Sbjct: 207 LVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLFEFRR 254 >gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c] gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c] Length = 148 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 25/161 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSN 76 L P++ N G V R N +L L+ P ++ + + R V N Sbjct: 3 LYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRRLKRA--GLDYHEYARMQVHPN 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+A A R F L+ + +G IFG E GL + Sbjct: 60 LSSALA----AIA----PRRLF--ALSTRGQMRYDTPTFSTGD--AFIFGPETRGLPDTV 107 Query: 137 IALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + I + P+ P SLN+S AV +MV+E Sbjct: 108 L---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 145 >gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2] gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2] Length = 291 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 17/159 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85 N+G + R+ + L L G + R ++ + + L + + D+ Sbjct: 146 NVGSIFRSCDAAGFSSLIL-GNTPGRENAAVRKTAMGTADWMPHTQTVD-LAQTLVDMKA 203 Query: 86 --FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + T K ++ G E +G+++ +A+ + + Sbjct: 204 QGYTI-TAVETAEQSKPYHDND-----------WHHRGVLVVGNEEYGISSHVLAVCDQV 251 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + P+ SLN++ A ++++ + Sbjct: 252 VHIPMFGRKNSLNVANAAAILMFHITTCLHAGHPDPGQH 290 >gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5] gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 69.7 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 14/173 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 +N+ V R F + +L ++ P P ++ + S NAD +D VR +S+ E +A Sbjct: 55 PQNVNAVLRTCEAFGIQELHVIEGPMK--PYDRNKKISQNADKWVD-VRRWSSTGECLAH 111 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + E A L+ F+G V ++FG E G+++E +ALS+A+ Sbjct: 112 L--------KAEGFAIYATHLGEGARTLDALSFAG-KVALVFGNEHRGVSDEAVALSDAV 162 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 P++ SLN+S A + + + +E ++ A F Sbjct: 163 YVIPMHGFVQSLNVSVAAAISIAKAVERRAAERGRHGDLSELEAAALR-ERFY 214 >gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 170 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P + N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN---TELHLIKPLGFSTDDKYMKRA--GLDYWDKVKIT 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL E + + + V E + +N +FG+E GL Sbjct: 60 YHENLPEFLESMD--------ENDELYVVSKFAERTYADVDYTDESKNHYFLFGKETTGL 111 Query: 133 TNEEIALSNA---IISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEKNVK 181 EI + I P N +LN+S ++++E + + V Sbjct: 112 P--EIFMRKYEKKCIRIPQNDRNIRALNLSNTAAIVIYEALRQQSFPDLERVH 162 >gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49] Length = 232 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 12/139 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + L LV + G +K + A + SNL++ ++ Sbjct: 54 HNTSAVMRSCDAFGIQDLHLVEEKFGKRVDKEIAMGAQKWVTLHR---HSNLEDCVS--- 107 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T +++ +P A L++ ++ + I FG E+ GLT + ++A+I Sbjct: 108 -----TLKDKGYQIVATSPHADASYLHDFDYT-KKSAIFFGTEKDGLTEGVLEQADALIK 161 Query: 146 FPVNPLFPSLNISQAVLLM 164 P+ SLNIS + ++ Sbjct: 162 VPMYGFTESLNISVSAAII 180 >gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 392 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 16/164 (9%) Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSANADCV 67 V + V+ P+ N+G + RA+ F + L RL+ P +A S+ + Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRN-----NFKSVLAPKEAAIVLNERIFSGQNVG 122 D + +F L+ A + F+ A + L + R V Sbjct: 230 PDIINLFEVLEGATSFEAFVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E + E +A ++ + P SLN++ AV ++++ Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330 >gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 175 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + N EA+ +L ++ + E +++L+E + + Sbjct: 73 GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR] Length = 226 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 16/153 (10%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIAD 83 N+ V R+ + ++ W ++KAR S A + V++ + + EA+ Sbjct: 31 HNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGSQNWVKIHNHKTVGEALE- 84 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 AT R + L+ E ++ E + + I+ G+E++G+T+E + +++ Sbjct: 85 -----ATQGRGMQVVVTHLS--EHSVDFRE-VDYTKPTAILLGQEKYGVTDEALDIADYH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ + SLN+S A +M++E + Sbjct: 137 VMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 169 >gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106] Length = 328 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 11/149 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + L L + K +SA A + V +L E + Sbjct: 180 QDPGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMA-VGGDLTEQL- 237 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T A+ + P + Q ++ G E GL++ AL++ Sbjct: 238 -------TIAQQQGVQIVATLPDADLTYW--ELDFQQPTIVVLGNEGAGLSSSLTALADQ 288 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P++ SLN++ LM++E Sbjct: 289 HVQIPLSGGVESLNVAICAALMLYEGQRQ 317 >gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae ACS-120-V-Col10a] gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae ACS-120-V-Col10a] Length = 178 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 13/160 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ N G +AR + T L L+ P +K + D++ + Sbjct: 5 IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFQTDDKHLKRA--GLDYWDALDITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +LK I L R I G+++ ++FG+E GL Sbjct: 62 DDLKAFINYLD------GRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPE 115 Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 + + + P++ LN+S + ++E + Sbjct: 116 AFMHEHEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQQ 155 >gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010] Length = 229 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N + L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 NL + ++ V + A + + + ++ +FGRE GL Sbjct: 62 DNLADFMS-------------QMKGQVYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGL 108 Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + P+N SLN+S V ++V+E + Sbjct: 109 P-EDFMREHPETALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1] gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1] gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1] gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7] gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1] gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1] gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7] gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1] gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3] Length = 218 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 19 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 74 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177 >gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1] gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1] Length = 267 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 27/176 (15%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M AP V++L N+G + R+ F L +V P P E + Sbjct: 113 MADGAPSAL------VLVLDQVTDPHNVGAILRSAAAFGA--LAVVAPDRHTPDETGTLA 164 Query: 61 --SANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ A ++ V L++ + A A Sbjct: 165 KSASGALERMPLVRVTNVVRTLEDLKKAGFWTAGLAA--------------DAPKTLAEA 210 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E G+ + ++ P+ SLN+S A + ++E Sbjct: 211 NLSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEMRRG 266 >gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 252 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 13/160 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q NIG + R LT++ L+N + KA + A + R F Sbjct: 106 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSLKF-RYFE 164 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ + + K L + + F N ++FG E G+ + Sbjct: 165 NL-SAVRNYPTL--------KERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIEDF 215 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P SLN++QA + ++E + ++ Sbjct: 216 SVG---EKTMIPTLSNIESLNVAQAATIYLFEGLRQKMLK 252 >gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus DSM 14838] Length = 175 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L + + NIG V R F + + L P + ++ A Sbjct: 15 EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGA 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123 + +D + N EA+ +L + + E +I+L+E + + + Sbjct: 75 EFTVDW-KYVDNCVEAVDNL--------KKEGYTVYSVEQAEGSIMLDELSLDRTKKYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 155 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 35/175 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L ++ P +K + +D Sbjct: 4 IVLYEPEIPPNTGNIIRLCANTGFH-LHIIQPLGFTWDDKRLRRAG-----LDYHE---- 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSV----------LAPKEAAIVLNERIFSGQNVGIIFG 126 +A +R+ + L K R +G ++FG Sbjct: 54 -----------FAAIRHHRDYAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDY--LLFG 100 Query: 127 RERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E GL + I P+ P S+N+S AV ++V+E +S ++ Sbjct: 101 PETRGLPPSILDALPMTQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQLDYASARD 155 >gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 197 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 18/199 (9%) Query: 1 MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP + L G ++L + NI V R + + ++N Sbjct: 1 MTPERRERLLSVLNKRQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKR 60 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 SS++A + + A + R + + A L E Sbjct: 61 WGHKSSSSAAKWLTVHQFSDT-----ATCMAVV----REKYDKIYTTHLAADAKSLYELD 111 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 F+G +V ++FG E+ G++ E L + P + SLNIS A + ++E M ++ Sbjct: 112 FTG-SVALVFGNEQEGVSEEIRKLCDGNFIIPQVGIIKSLNISVACAVSIYEAMRQKSIA 170 Query: 176 S---EKNVKEQNTPATKGE 191 +KN+ + A E Sbjct: 171 GHYEQKNLPDAQYNALLEE 189 >gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 77/175 (44%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+ + R+ + + V WP + + S ++A V+V + + AI+ Sbjct: 19 PHNVSAIVRSADAVGIHNIHAV-----WPDQHVKLSVSSAAGSNSWVKVIPHQSTENAIS 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +++ V ++A+ E I Q I+ G+E+ G++++ +AL++ Sbjct: 74 QI--------KSQGMQILVTNLSDSAVDFRE-IDYTQPTCIMVGQEKTGISDKALALADQ 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + +E + + + + + Sbjct: 125 HIIIPMVGMVQSLNVSVASALILYEAQRQRQLAGMYD-RENSLLSEQEQQEWLFE 178 >gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 154 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 21/162 (12%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-- 78 P++ N G R +L LV P SE + + SV V +L+ Sbjct: 8 SPRIPPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVHPSLQAA 66 Query: 79 -EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 EA+A ++A TA++ F V ++FG E GL + Sbjct: 67 WEALAP-ARVFAFTAQSTTAFADVRYR--------------PGDVLLFGPEPTGLDAATL 111 Query: 138 ALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 A ++ + P+ SLN+S A + V+E S Sbjct: 112 ADAHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGYSGA 153 >gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 234 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 IIL + N+G + R+ +F + + R + +SA A I++++V Sbjct: 87 IILDQIEDPHNLGAIIRSAESFGFDGVVIPERRSASVTSTVYKTSAGA---INNIKVYRV 143 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL +I DL +IY A ++ VG++ G E Sbjct: 144 KNLTRSIKDLKDKGFWIYGLAG--------------EADSSIDKADLTGKVGLVVGNEGS 189 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G++ + +++ P+ SLN S A + ++E + Sbjct: 190 GISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230 >gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 155-74] Length = 206 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 7 PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 62 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165 >gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides DSM 17374] Length = 258 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 16/174 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64 L+ V++L N+G + R+ F + L +V P R +E S+ A Sbjct: 94 SLEEGKDSLVMVLDGITDPHNLGAILRSADQFGV-DLVVV-PERRSAQANETVARVSSGA 151 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + V + +T + + + +E I I+ Sbjct: 152 SQYVPTAVVTN------------ITSTLTMMKDHGFWIYGADMNGESSETIEFTGRCIIV 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E G++ + I+S P+ SLN+S A ++++E + Sbjct: 200 MGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMYEARRQRRALPGE 253 >gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21] gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21] Length = 160 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGCPAHSQVKFKLGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium yellowstonense SS-5] Length = 248 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 12/164 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++IL +N+G + R F ++ + + R +E +S A + + Sbjct: 94 KGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVIKASTGAVFHLPIAK 153 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L+ I + E I + ++ G E G+ Sbjct: 154 V-GSLRNVIEKFKKKGG-----------WVVAVEKGGRNIAEIDFPYPIALVVGSEGKGV 201 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ I + P+ SLN+S A + +WE + I Sbjct: 202 SKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDG 245 >gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis SK1302] gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis SK1302] Length = 167 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + + + +++ + + + + +FGRE GL Sbjct: 62 DSLADFMEKMD-----------GQLYLISKFAEKVYSDADFTTEGDHYFLFGREDKGLP- 109 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 EE + + P+N SLN+S V ++V+E + Sbjct: 110 EEFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1] gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1] Length = 151 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRA--GLDYHEYATLQRH 60 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + L TT +R + P + IFG E G Sbjct: 61 ADLASCLESLGHPRLFAFTTKGSRPFHDAAFVPGD---------------AFIFGPESRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + P+ SLN+S V + V+E Sbjct: 106 LPPEVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147 >gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT] Length = 161 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + ++ Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAQIKK 59 Query: 74 FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 E + + ++A T + E L +FG E G Sbjct: 60 HKTFNEFLNTEQPNRLFALT--TKGTPAHSQVNFELGDYL------------MFGPETRG 105 Query: 132 LTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV + V+E Sbjct: 106 IPMSILDNLPTTQKIRIPMIENSRSMNLSNAVAVTVYEAWRQ 147 >gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7424] Length = 310 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 11/152 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R L + R + +A A + RV NL A+ L Sbjct: 154 PHNLGAMIRTTEAMGAQGLVIPQRRAAGITSTVMKVAAGALEHLPVARVV-NLSRALEQL 212 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 F ++ +L+ F G VG++ G E GL+ +A++ Sbjct: 213 ---------KEAGFWLYGTMADSGKLLHTIDFKGA-VGLVVGSEGEGLSLLTQKSCDALV 262 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S P+ PSLN S A + ++E Sbjct: 263 SIPLAGKTPSLNASVATAIALYEVFRQRQSDK 294 >gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis DSM 18011] Length = 249 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 28/181 (15%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKA 57 P L K P ++ V N G +AR + + + P G + A Sbjct: 88 PFLYEQGKNPFFVMLDGVTDVR-----NFGAIARTCECGGVDAVVI--PMKGSVSVNADA 140 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF 116 +SA A + R ++++ TT + +++ +LA E + Sbjct: 141 VKTSAGALHTLPVCR-----EQSLN-------TTIKYLKDSGFRILAATEKGDYNYTQGD 188 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I G E G++ E ++L + ++ P+ SLN+S A ++++E ++ Sbjct: 189 YTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEAVKQRTPDK 248 Query: 177 E 177 E Sbjct: 249 E 249 >gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L] Length = 347 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 19/155 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 +N+G + R L + R + R +A A RV NL A+ L Sbjct: 193 PQNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVRKVAAGALETFPIARVV-NLSNALEQL 251 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +IY T A L ++ +V ++ G E GL+ + Sbjct: 252 KTAGFWIYGTAAGTGK--------------LLHKVDLTGSVVLVIGSEGNGLSLRSQSCC 297 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +IS P+ PSLN S A ++++E Sbjct: 298 DMLISIPLQGKTPSLNASAATAMVLYETYRQRWSD 332 >gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM 9187] gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM 9187] Length = 154 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N L L+ P +K + + + Sbjct: 4 IALYEPEIPPNTGNIIRLCANTGYF-LHLIEPMGFAWDDKRLRRA--GLDYHEFAEIKRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F N I + TT P EA + + ++FG E G Sbjct: 61 ANFENFLSTIGNARIFACTTKGKA-------YPSEAGFIAGD--------VLLFGPETRG 105 Query: 132 LT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + + + P+ P S+N+S AV + V+E Sbjct: 106 LPMSIIESLPEAQRL-RIPMLPQSRSMNLSNAVSVFVYESWRQ 147 >gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 176 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 13/171 (7%) Query: 3 PYAPQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P + +N K P++++ V N+G R F + L L P + Sbjct: 12 PSVEEFKNQDKLPIVVVLDNVRSLH--NVGSAFRTADGFAVDALYLCGITAQPPHREIEK 69 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++ A ID + F+N+ +A+ADL N ++ + + +L+ Q Sbjct: 70 TALGATQSIDW-QYFANVADAVADLK-------ENGYQIIAIEQAENSISLLDFEPKKDQ 121 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + FG E G++ E + + I P S NI + +++W+ Sbjct: 122 KFALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFS 172 >gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] Length = 160 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 22/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P++ +N G +AR +L L+ P G+ A+ A D + V + Sbjct: 4 VVLYQPEIPQNAGNIARTCAATG-AELHLIRPL-GFQWNSAKLRRAGLDYWPEVDYVLHD 61 Query: 77 ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E + I+A +++ + V G ++FG E GL Sbjct: 62 SWRAFLETLPPDGRIWAFSSKVSRLYTEVRY------------QPGDY--LLFGPESRGL 107 Query: 133 TNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171 +E + ++ P+ SLN++ AV + ++E + Sbjct: 108 PSEVLERFPG-VTIPMPGRGGRSLNLAVAVGVGLYEALRQ 146 >gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413] gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413] Length = 260 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIIL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +LQ+ ++L ++ Q N+G + R + L L + K +SA Sbjct: 101 ELQSQIPFTGVVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQ 160 Query: 65 DCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + V +LK + + AT + + I + Sbjct: 161 WFRLATA-VSEDLKATVQLCQQAGMQVVATLPTAKLTYW--------------EIDWHKP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I+ G E GL+ + A+++ + P++P SLN++ LM++E Sbjct: 206 SLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQ 256 >gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 267 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 11/143 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R+ + + L + +A S A ++ ++ +A+L Sbjct: 133 NIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPWTWA----EQPLAELST 188 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 I TA S+ + + R+ + + I+ G E GL +E IA ++ ++ Sbjct: 189 IGFRTAAMALTHNSI-------PLNDARLKAEPRLAIVMGTEGDGLPSEVIAQADYVVRI 241 Query: 147 PVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + WE Sbjct: 242 PMAHGVDSLNVAAASAVAFWELR 264 >gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493] gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU Goat Q177'] gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 334] gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154] gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493] gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU Goat Q177'] gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 331] gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA 334] gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154] Length = 152 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N + L L++P EK + + + Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDEKRLQRA--GLDYREWATIIHY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F K A A+ H I+A T + + + V + +FG E G Sbjct: 61 DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + I P+ S+N++ V ++++E Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum WAL-14163] gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum WAL-14163] gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 163 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 17 IILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--V 71 I+L +P++ N G + R+ +L L+ P S++ + V Sbjct: 3 IVLYEPEMPMNTGNIGRSCVATKT----KLHLIEPLGFRLSDREIKRA--GLDYWPHLDV 56 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V+S+ ++ + +RN + A + + + I+FG E G Sbjct: 57 TVYSDYRDFL------------DRNPGAKIYMATTKAPNVYSDVKYEPDCYIMFGPESRG 104 Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + + P+ SLN+S +V ++++E + Sbjct: 105 IPEEILVENQETCVRIPMWGETRSLNLSNSVAVILYEALRQ 145 >gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM 15829] Length = 367 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G + R+ + + + N R A +SA A + V+V NL AI +L Sbjct: 227 EGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPIVQVV-NLARAIDEL 285 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + F V+ E A V +I G E G+++ + I Sbjct: 286 ---------KEHGFW-VIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCDFIC 335 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 P SLN++QA +M +E M + +S Sbjct: 336 KLPQRGRIESLNVAQAATVMCYEWMRQNKLS 366 >gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str. F0039] Length = 176 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 11/168 (6%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L + + N+G V R+ F + + L PS + ++ A Sbjct: 15 EEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSAEIHKTALGA 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123 + + + + + +A+ +L + ++ F + E + + + + + + Sbjct: 75 EDSVSW-KYYKSTLDAVEEL--------KQQDYFVYSIEQVEGSQNMAKINLDHSKRYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E G+ E + S++ + P SLN+S ++VWE + Sbjct: 126 VLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVWEFAKQ 173 >gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 372 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G + R+ + + + N R A +SA A + V+V NL AI +L Sbjct: 232 EGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPIVQVV-NLARAIDEL 290 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + F V+ E A V +I G E G+++ + I Sbjct: 291 ---------KEHGFW-VIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCDFIC 340 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 P SLN++QA +M +E M + +S Sbjct: 341 KLPQRGRIESLNVAQAATVMCYEWMRQNKLS 371 >gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 157 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ H A A L K G ++FG E GL Sbjct: 55 --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ P S+N+S +V ++V+E Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNSVSVVVYEAWRQ 147 >gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 301] gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046] gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227] gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str. 8401] gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11] gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1] gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str. REL606] gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933] gi|147866|gb|AAB00161.1| spoU [Escherichia coli] gi|290501|gb|AAA62004.1| spoU [Escherichia coli] gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai] gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301] gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T] gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046] gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227] gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401] gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS] gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739] gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638] gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A] gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22] gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171] gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1] gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli] gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli] gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli] gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli] gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli] gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43] gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952] gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)] gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017] gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. CB9615] gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088] gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC H10407] gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70] gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1] gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC 796-83] gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B] gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14] gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G] gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68] gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180] gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120] gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007] gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253] gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167] gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ECD227] gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7 str. 1125] gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli TA271] gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA [Gm18]methyltransferase) [Escherichia coli H591] gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88] gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2747-71] gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6] gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272] gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304] Length = 229 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492] Length = 175 Score = 69.3 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 13 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNV 121 A+ +D + N EA+ +L ++ + E +++L+E + + Sbjct: 73 GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLNKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 273 Score = 69.3 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 13/169 (7%) Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P ++ +G V+++ NIG + R+ + + L + +A Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + ++ L ++IA L + TA +SV P + + E Sbjct: 167 SMGSVFLVPWTW----LDDSIASLSRLGFRTAAMALTDRSV--PLDDPALAAE-----PR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL E I ++ ++ P+ SLN++ A + W+ Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264 >gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 180 Score = 69.3 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P V++L + + NIG V R F + + L P + ++ Sbjct: 17 SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 76 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-V 121 A+ +D + N EA+ +L + + E +I+L+E + Sbjct: 77 GAEFTVDW-KYVENSVEAVDNL--------KKEGYVVYSVEQAEGSIMLDELALDKEKKY 127 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 128 AVVMGNEVKGVRQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 176 >gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales bacterium ALC-1] gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales bacterium ALC-1] Length = 151 Score = 69.3 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L++P++ N G + R ++L LV P ++K + + V + Sbjct: 5 IVLIEPEIPNNTGNIGRLALATG-SRLHLVKPFGFEINDKRLKRA--GLDYWQHLEVIYY 61 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ + D ++ ++ V + I +N+ ++FG+E G Sbjct: 62 NSIDDFFLKNKDSIMVFLSS---------------QGKVSHWDINYTENMFLVFGKESVG 106 Query: 132 LTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 L I + + P+ + SLN++ AV ++V+E + Sbjct: 107 LPKPLIEKHKDQLFKIPLYSKDIRSLNLANAVSIIVYEGLRQ 148 >gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 270 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ KG ++IL Q+ NIG V R+ + + R K +S + Sbjct: 116 LQPRQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLFA 175 Query: 68 IDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + V S+++ A A L + T+ R R +F+ + I Sbjct: 176 LP--IVESDVETAYAWLKRYGYQVVTTSPRARVSFR--------------QARYSTRTAI 219 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G ER G++ + A + +S P++ SLN+ A +LM++E + Sbjct: 220 VMGNEREGVSEDWFARHDLSVSIPMHGRADSLNVGNAAVLMLYEVLHQQ 268 >gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria bacterium BAL38] Length = 175 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 11/166 (6%) Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P+I+ L D + NIG V R F + ++ L P+++ ++ A Sbjct: 16 EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGII 124 + ++ E + L + N + E AI+L++ + + +I Sbjct: 76 ETVTW-EYAKDVLEVVHQL--------KQENVKVYSVEQTENAIMLDDFQPETNTKYALI 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E G++ E I LS+ +I P SLNIS + +++W+ + Sbjct: 127 FGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172 >gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A] Length = 159 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 36/179 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66 + L PQ+ N G + R N + +L +++P +K + + + Sbjct: 3 VALFHPQIPPNTGNIIRLCANTGV-KLHIIHPTGFVWDDKRLRRAGLDYAEFAEITHHEN 61 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 D R F + TT R + + +P + ++FG Sbjct: 62 WSDFARYFPK-----ESCIWAL-TTRGKRCVYDAAFSPNDV---------------LLFG 100 Query: 127 RERWGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E GLT E EIA + + P+ SLN+S +V ++++E + + + + + + Sbjct: 101 SETSGLTEEVHAEIAPEHKL-RLPMQACSRSLNLSNSVAIVLYEALRQTGLPPDPQLAQ 158 >gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 309 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + + N G V R + L + + KA +S + Sbjct: 137 EEILAARPKLVAVLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 196 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++EA+ L A R + L ++ G +F Sbjct: 197 FHLPVAVGVP-VEEAVEGLRR-----AGVRILAADGAGTDDLDAEL-DKGTMGGPTAWVF 249 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL E AL++A++ P++ SLN++ A + ++ S Sbjct: 250 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRASGG 301 >gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803] gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803] Length = 165 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 34/180 (18%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MT P + L +P++ N G +AR F+L L L+ P G+ + + Sbjct: 1 MTHLKPS------PLRVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPL-GFSIDDRQLK 52 Query: 61 SANADCVID-SVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A D ++ V +N + ++A + + R+ + L F Sbjct: 53 RAGLDYWPHVNLSVHTNFQAFKNSLAKPFRVIGCSRRD-------------GVALQGFCF 99 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168 +V ++FGRE GL + I++ P+ SLN+S A + ++ Sbjct: 100 EPGDV-LLFGREDTGLPQPVRDQCDQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158 >gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545] Length = 150 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++LV PQ+ N G +AR ++ L LV P + + VRV Sbjct: 1 VVLVSPQIPGNTGTIARTCAA---SRVPLHLVGPLGFTLEDSQLKRA--GLDYCVCVRVH 55 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + A R L K A E ++FG E GL + Sbjct: 56 DDWDAFYAYWSVDLGAPGR--------LVAKFGARPHAEEGAYLPGDWLLFGAETTGLPD 107 Query: 135 EEIALSNA---IISFPVNPLF-PSLNISQAVLLMVWECMEN 171 E I P++ SLN++ + + V+E + Sbjct: 108 EAHDACARSGGIRRIPIDEDHVRSLNLAVSAGVGVYEAIRQ 148 >gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium HTCC5015] gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium HTCC5015] Length = 159 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 26/166 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + SVR + Sbjct: 4 IALYQPEIPPNTGNIIRLCANTGF-QLHLIHPLGFELDDKRLRRAGLDYHEFASVREHES 62 Query: 77 LKEAIADL-------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + D H ++A + R R + V F +V +FG E Sbjct: 63 WEAFCRDFVQGGDANHRLFALSTRGRQRYSDV-------------AFREGDV-FLFGPET 108 Query: 130 WGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + ++ + + P+ SLN+S V ++ +E Sbjct: 109 RGLPQDILDDLPEAQRL-RLPMRASGRSLNLSNTVAVLGYEAWRQQ 153 >gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 436 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 49/212 (23%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKAR 58 A + N V + V+ N G + R L V+P+ G + AR Sbjct: 203 SARDVLNGRPKLVSVPVETNEPGNAGTLIRVADAMG-ADCVLFAGDTVDPQSG---KAAR 258 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 SS+ + + AR RN K V +E + + G Sbjct: 259 SSAGSLFHIP----------------------VARERNIMKVVSMLRERGLAIAATAADG 296 Query: 119 ------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 Q +FG E GL E A ++ + P+ SLN++ A + ++ Sbjct: 297 EVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADYRVRIPIRGRAESLNLATAASICLF 356 Query: 167 EC----MENSIVSSEKNVKEQNTP--ATKGEL 192 E + + + + E++ P A EL Sbjct: 357 ESSKYQAKAAESARSGQISEEDVPEAAEFDEL 388 >gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549] gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1] Length = 250 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + +NL E IA L K L + + F Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct] Length = 155 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 24/158 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I L +P++ N G + R N +L L+ P +K + + + Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58 Query: 73 VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ N E D TT + K + + ++FG E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFS---------------CDDILLFGPET 103 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + L + P++ SLN+S +V ++++ Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 155 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 24/158 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I L +P++ N G + R N +L L+ P +K + + + Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58 Query: 73 VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ N E D TT + K + + ++FG E Sbjct: 59 IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFS---------------CDDILLFGPET 103 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + L + P++ SLN+S +V ++++ Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 19/171 (11%) Query: 4 YAPQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + + K PV+IL V Q N+G V R F + ++ L + + + Sbjct: 16 STEAFKKAPKLPVVILLDHVRSQN--NVGSVFRTSDAFRIEKIFLCGITSTPENREVHKT 73 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFS 117 + A+ +D + EA+ R + + A ++A + + Sbjct: 74 ALGAEDAVDW-EYVKDTTEAVD----------RLKKEGYRIFAIEQAENTTSLENFSLSP 122 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GQ +IFG E G+ E I LS+ I P S NIS V +++W+ Sbjct: 123 GQKYALIFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQI 173 >gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] Length = 175 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N +A+ +L R + E +I+L++ + + Sbjct: 73 GAEFTVDW-KYVNNAVDAVDNL--------RKEGYIVYSIEQAEGSIMLDQLELDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548] gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112] gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis subsp. tularensis WY96-3418] gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548] gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida Fx1] Length = 155 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 24/158 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I L +P++ N G + R N +L L+ P +K + + + Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58 Query: 73 VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ N E D I+A T + + + V + ++FG E Sbjct: 59 IYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPET 103 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + L + P++ SLN+S +V ++++ Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 283 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 6/171 (3%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP L+ + +++ P N+G + R+ F + +V ++ +S Sbjct: 118 TPRLKDLRLQSVPLIVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAS 177 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V S++ E +A R ++ E V + G Sbjct: 178 TGSLFAMP-VVTVSSVDEILAFRD-----ARRASGTDLHIVGTDETGSVTIDAHDFGGGT 231 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ + +++ P+ SL A + ++E Sbjct: 232 VLVIGNETRGMSAAWRDGCDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 282 >gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae WPP163] Length = 230 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 31/207 (14%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N + + I ++ N+ V R + Q+ WP+ Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVH-----AIWPTS 55 Query: 56 KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109 + ++ SA V+ +++A+ L + AT N + + +E Sbjct: 56 RMKTLVSSAAGSNSWVQVKTHRTIRDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + I+ G+E+ G+T+E + L++ I P+ + SLN+S A L+++E Sbjct: 108 -----IDYTRPTCILLGQEKTGITDEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 163 RQRQIAGMY--RREDSPLDEEEQQRLL 187 >gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +++A V+ N+ +A+ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASSAAGSNSWVEVKTHRNISDAVN 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L AR + L+ + A+ E I + I+ G+E+ G+T E ++L++ Sbjct: 85 HLK------ARGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITEEALSLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSTLPEKEQQRLLF 188 >gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp. SKA34] gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp. SKA34] Length = 154 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ TT K N + G ++FG E GL Sbjct: 63 FTAFMQAMEGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E IA + P+ P SLN+S AV ++ +E Sbjct: 108 AEFIASQPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147 >gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.] Length = 154 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N QL L+ P +K + V+V ++ Sbjct: 4 IALYEPEIPPNTGNIIRLCANTG-AQLHLIEPLAFVLDDKRLRRAGLDYHEFAPVKVHAD 62 Query: 77 LKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A ++A T + + A ++E I ++FG E GL Sbjct: 63 FA-AFQQWQQNRPLFACTTKAKQFHH-------QATFIDESI-------LLFGPESRGLP 107 Query: 134 NEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + L + I P+ P SLN+S A ++++E Sbjct: 108 ATLLDNLPDRQKIRIPMYPESRSLNLSNATAIILYEAWRQ 147 >gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197] gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197] gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae 1617] Length = 229 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQHQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012] Length = 229 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas albilineans GPE PC73] gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein [Xanthomonas albilineans] Length = 159 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 25/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 ++L P++ N G V R N QL L+ P S++ + + + V Sbjct: 9 VLLFQPEIPPNTGNVIRLCANTG-AQLHLIEPLGFDLSDRQLKRA--GLDYHEYAQLQVH 65 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L A+ L ++A + R + +FG E GL Sbjct: 66 ASLDAALQTLAPQRLFALSTR--------------GCARYDAAAFADGDAFLFGPETRGL 111 Query: 133 TNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + + P+ P SLN+S AV ++V+E + + Sbjct: 112 PPEVLEAIPPAQRL-RLPMRPDNRSLNLSNAVAVVVFEAWRQLGFAGAE 159 >gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 161 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 25/173 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV+P++ N G V R N T L LV P +K + + R Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLLQRA--GLDYHEHAAVRRH 60 Query: 75 SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + + D ++A T R V P +A L +FG E Sbjct: 61 ASWEALLVAEQPDPQRLFAFTTRGSRPLTEV--PWQAGDWL------------VFGCETR 106 Query: 131 GL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL T + + + P+ SLN+S AV + V+E + Sbjct: 107 GLDPTLRDRFPAAQRVRLPMRAGQRSLNLSNAVAVAVFEAWRQQDFAGASGAP 159 >gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14] gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14] Length = 154 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ TT K N + G ++FG E GL Sbjct: 63 FAAFMQAMEGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E IA + P+ P SLN+S AV ++ +E Sbjct: 108 AEFIASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147 >gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeovibrioides DSM 265] Length = 249 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 17/171 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +++L NIG + R + LV + + +SA A Sbjct: 93 SVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGALS 152 Query: 67 VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +V +L+ A+ + AT A I Sbjct: 153 HMRVAKVKSLVRSLEFLHANGIRVIAT--------------DMEAETNYTDADFRLPTAI 198 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E GL E + + + P+ SLN+S ++++E M ++ Sbjct: 199 VLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQRLL 249 >gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057] Length = 216 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P VI+L + + NIG V R F + + L P + ++ Sbjct: 53 SVEEFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 112 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + +N EA+ +L + + E +I+L+E + Sbjct: 113 GAEFTVDW-KYVNNSVEAVDNL--------KKEGYVVYSVEQAEGSIMLDELTLDKTKKY 163 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 164 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 212 >gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 184 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R F L +L LV P ++ A + + +L AI L Sbjct: 38 HNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGA----EEAVPWRHLDSAIEFLE 93 Query: 86 FIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R R +++LA ++ + N+ + +I G E G+++E I ++ Sbjct: 94 -------RCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADD 146 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 + P + SLN+S A + +++ Sbjct: 147 CLEIPQHGTKHSLNVSVATGIAIYDL 172 >gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146] gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 157 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L L+ P +K + S+R + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFIWDDKRLRRAGLDYHEFASIRRHHD 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ ++A T S + ++ ++FG E GL + Sbjct: 63 YSSFLSGEKPTRLFALT-TKGTPAHSDVTYRDGDY-------------LLFGPETRGLPS 108 Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ S+N+S AV ++V+E Sbjct: 109 TILDSLPTAQKI-RIPMLASSRSMNLSNAVSVVVYEAWRQ 147 >gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666] Length = 183 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 35/193 (18%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P +++ I+LV+P++ N G V R N +L LV P +K + Sbjct: 12 PASNDNSAMFNIVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GL 68 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--- 122 + +V R+ + + + + A L G Sbjct: 69 DYHEYAQVL------------------RHASWQALLDSQRPPAGRLFAMTTHGAGSVYDM 110 Query: 123 -------IIFGRERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FG E GL E ++ + P+ P SLN+S V + V+E + Sbjct: 111 RFLPGDWLVFGAETRGLAPDVRESFPMAQRL-RVPMQPGQRSLNLSNTVAVTVFEAWRQN 169 Query: 173 IVSSEKNVKEQNT 185 + + + Sbjct: 170 GFAGSHHPAAADQ 182 >gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605] gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus sp. CC9605] Length = 163 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 30/168 (17%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L +PQ+ N G +AR F + L L+ P +++ + V Sbjct: 4 ISPLRIALFEPQIPPNTGNIARTSAAFRIP-LTLIEPLGFKVDDRSVRRA--GLDYWPHV 60 Query: 72 RV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ F + + + + R ++ S + ++FG Sbjct: 61 QLSIASNFPEFQAGLRPGQRLIGCSRRGGSSLTSFTFQR--------------GDVLLFG 106 Query: 127 RERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166 RE GL ++I++ P+ SLN+S A L+ + Sbjct: 107 REDTGLPESVRDACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154 >gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1] gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163] gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429] gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1] gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163] gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429] Length = 168 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 26/178 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +P + N G +AR N +L L+ P +K + +V + Sbjct: 4 IVLFEPSMPANTGNIARTATAIN-ARLHLIKPLGFDLDDKKVIRA--GLDYWSNVDLVIH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 NL E + T N F K + + + + +FG E +GL Sbjct: 61 ENLPEFLK--------TIGNGKLFLVSKYAK-ISYDQADFSNTSVDQYFLFGNEAYGLPE 111 Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 N E I P N SLN+S +V ++++E M + + E + Sbjct: 112 VFMRKNPE-----KAIRIPQNDQHVRSLNLSNSVAIVLYEAMRQQNFHGLERIHEYDQ 164 >gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans] Length = 160 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 25/172 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++LV+P++ N G + R N QL LV P G+P + A+ A D +V Sbjct: 4 VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAG-LDYHDYAQMKVH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRER 129 + + + + + + A+ + +FG E Sbjct: 61 HDWQAFLDSF-----------PADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSET 109 Query: 130 WGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E I P+ P SLN+S V ++V+E + + + Sbjct: 110 KGLAPALRESFPPVQRI-RLPMRPDNRSLNLSNTVAVVVYEAWRQNGFTGGQ 160 >gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W] gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W] gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11] Length = 229 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E + + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-VDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 17/181 (9%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP Q ++ + + +L D N+ + R+ F L + +V PR+G+ Sbjct: 1 MTPERLARIKQTLDTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPREGF--- 57 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A +A + + +A+++L + + + L+ + + Sbjct: 58 RAFRKTAGGSYNWVTTHTHPTMDDAVSELK------GQGHKLYAAQLSDRAIDYREADFT 111 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +I G E G+++ ++ I P+ + SLN+S A +++ E ++ Sbjct: 112 VP---CTVIMGNEVDGVSHGAAEQADEHIVIPMMGMVESLNVSSACAIILSEAQRQRKLA 168 Query: 176 S 176 Sbjct: 169 G 169 >gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC 7942] gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC 7942] Length = 156 Score = 68.9 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 26/172 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++L P++ N G +AR + T L L+ P S++ + V++ Sbjct: 2 PQVVLYQPEIPPNTGNIARTCAATD-TPLHLIEPLGFELSDRYLKRA--GLDYWPYVQLT 58 Query: 75 SNLKEAI-------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ ++ I TT + L A ++FGR Sbjct: 59 THPDWSVFRQQQQQQGGRLIAFTT----KGELNYLDCDFQATDW-----------LLFGR 103 Query: 128 ERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEK 178 E GL + +A + + P SLN+S +V + ++E ++ Sbjct: 104 ETSGLPEDVLASCDHRVRIPTPQAGVRSLNLSVSVAIGLFEARRQVYFATNP 155 >gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 229 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ ++ A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ ++E + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSMLPEYEQQRLLFE 189 >gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 158 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 27/172 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N L LV P ++ + + V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDRLMRRA--GLDYHEYAEVRRH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++ D ++A TT R+ + + P + +FG E Sbjct: 61 SGWTALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWM---------------VFGAES 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 GL E E + P+ P SLN+S AV + V+E + + Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPGQRSLNLSNAVAVTVYEAWRQNSFLAPAP 157 >gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703] Length = 263 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 23/172 (13%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G ++L Q N G + R+ + Q+ N S K + A ++ Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWSPKVLRAGMGAHFLLS- 167 Query: 71 VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +FS ++ E H I+AT RN + Q +F Sbjct: 168 --IFSRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQPCAWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E G++ ++A + P+ SLN++ A + ++E M I + Sbjct: 211 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262 >gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 3_1_12] gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis NCTC 9343] gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5] gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16] gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis 638R] gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 175 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L D + NIG V R F + + L P + ++ A Sbjct: 15 EEFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGA 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGI 123 + +D + +N E + +L R+ + E +I+L+E + + + Sbjct: 75 EFTVDW-KYVNNAVETVDNL--------RSEGYVVYSVEQAEGSIMLDELTLDRSKKYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 222 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ F +T+L LV G A S +A + R F + Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61 Query: 77 LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L EA D + + A +NE F +N + G E Sbjct: 62 LIEARTYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107 Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166 GL+ +E + + + P + SLN++ A +++ Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144 >gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 169 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 28/166 (16%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 74 -FSNLKEAIA---DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +L+E ++ D+ +Y + +R+ + + +FG+E Sbjct: 60 YHDDLREFVSTVPDISKLYLVSKFASRDYTDVDYT-------------ADGDHYFLFGKE 106 Query: 129 RWGLTNEEIALSNA-IISFPVNP-LFPSLNISQAVLLMVWECMENS 172 GL E + I P N +LN+S + ++++E + Sbjct: 107 TTGLPEEFMRRYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152 >gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238] gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238] Length = 152 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 +LV P++ N G + R L +L L+ P EKA + V++ + Sbjct: 4 VLVTPEIPYNTGAIGRTCVALEL-ELILIRPYGFSLDEKAVRRA--GQDYWKHVQLSEYD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++ + D R + S+ +E + ++FG E GL Sbjct: 61 SWQDFMDD-----------RKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPA 109 Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173 + + + P+ NPL SLN++ ++++ M + Sbjct: 110 TVLDGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQL 150 >gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana] gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana] Length = 278 Score = 68.9 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ F +T+L LV G A S +A + R F + Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61 Query: 77 LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L EA D + + A +NE F +N + G E Sbjct: 62 LIEARNYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107 Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166 GL+ +E + + + P + SLN++ A +++ Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144 >gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii ATCC BAA-894] gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894] Length = 157 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 43/171 (25%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------RDGWPSEKARSSSANAD 65 I+L +P++ N G + R N +L ++ P R G + + +AD Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHAD 62 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ EA TT P +A+ G ++F Sbjct: 63 --------YAAFLEAEKPQRLFALTTKG---------TPAHSAV----SYQDGDY--LMF 99 Query: 126 GRERWGLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL + + + I P+ P S+N+S AV ++V+E Sbjct: 100 GPETRGLPASIL---DVLPQEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus propionicus DSM 2032] Length = 269 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 18/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ +++ L R + +SA A + +V Sbjct: 122 ILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLCQVV- 180 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL +A+ L +I+ A + A + FSG + ++ G E G Sbjct: 181 NLVDALNRLKEQGFWIFGAIA------------EANAAPIYTTDFSG-PICLVIGSEGKG 227 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + +++ P+ F SLN S A ++++E S+ Sbjct: 228 IRPLVRKQCDVLVTIPMQASFNSLNASVAAAVIMFEIARRSL 269 >gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136] Length = 250 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 21/157 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82 N G +AR + + + + + A +SA A I R +NL I Sbjct: 110 NFGAIARTCECAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCR-ENNLTNTIKFLKD 168 Query: 83 -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + AT E + II G E G+ E +AL + Sbjct: 169 SGFKIVAAT---------------EKGDYDYTKATYTDPTCIIMGAEDTGVPYEHLALCD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 I P+ SLN+S A ++++E ++ ++E+ Sbjct: 214 EWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFTNEE 250 >gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 273 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 18/176 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P+L +A+ V++L D N+G + R + + L +PR P +A S Sbjct: 109 PSVPELIAAARR-VLVLEDLVDHGNVGAIYRCAAALGVDAVVL-SPRCADPLYRRAVKVS 166 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120 A I R+ + + DL R L P ++A+ +++ + +G+ Sbjct: 167 MGAVFAIPYARM-DDWYHGLGDL--------RAAGFRLLALTPDQSAVPIDKAVPAAGER 217 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-----SLNISQAVLLMVWECMEN 171 V ++ G E GL++ + ++ + P++P SLN+ A + + M + Sbjct: 218 VALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGVDSLNVVAAASIACYGLMRS 273 >gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304] Length = 224 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 12/145 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG R F + L R G E A +SA A I RV N AI L Sbjct: 90 NIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHIPIARV-ENFASAIKKLKK 148 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + TT LA L E + ++ G E G++ + ++ Sbjct: 149 LGFTT----------LAADLDGEDL-EAVSLLLPAAVVIGGEDRGVSRPVKKQCDFVVKI 197 Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171 P SLN+S A + ++ Sbjct: 198 PGVGKVNSLNLSVAAGIFLYTLSRQ 222 >gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina ymp] Length = 154 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 25/169 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N QL L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L+ + L ++A T + F I +FG E GL Sbjct: 61 ADLQSCLDSLGQPRLFAFTTKGSQPFH--------------EIAYQPGDAFLFGPESRGL 106 Query: 133 TNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 EE+ + + P+ SLN+S V + V+E + + + Sbjct: 107 P-EEVRNALPPEQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQNGFAEAE 154 >gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cellulosilyticus DSM 2522] gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cellulosilyticus DSM 2522] Length = 157 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 23/166 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++L +P++ N G +AR N + L L++P ++ + +V V Sbjct: 2 GIHVVLHEPEIPANTGNIARTCAGTNAS-LHLIHPLGFSTDDRMLKRAGC--DYWPNVHV 58 Query: 74 --FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + N+++ A F+ T+ K + + ++ IFG+ Sbjct: 59 EHYDNIEQLFARFPEGEFFLIETSG-----EKYYHDFDYSDLE--------KDYFFIFGK 105 Query: 128 ERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + I P SLN+S ++V+E + Sbjct: 106 ETKGLPQDLIDKYKERCFRIPQTDKIRSLNLSNTAAILVYEALRQQ 151 >gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA] gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA] Length = 168 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDISYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + +++ + E +FGRE GL Sbjct: 63 ESLEDFMEKMD-----------GQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLP- 110 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 111 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHEYEA 164 >gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325] gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325] Length = 157 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 28/170 (16%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G +AR N T+L L+ P +K + + Sbjct: 4 IVLYQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKQVKRA--GLDYWKDLDLV 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----FSGQNVGIIFGRE 128 V+ + +E + + K + + + + IFGRE Sbjct: 59 VWDSFEEFLEN------------TEDKHYYLITKFGEKNYSNFDFSNKNDEEIYFIFGRE 106 Query: 129 RWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL E E N + P++ SLN+S L+++E + SS Sbjct: 107 TKGLPKEFREKYN-NQCLRIPMSDKVRSLNLSNTAALIIYEALRQQNFSS 155 >gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum centenum SW] Length = 251 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 VI+L N+G + R+ F + +V R P + +++ A + VRV Sbjct: 106 VIVLDQVTDPHNVGAIMRSAAAFG-ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRV- 163 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +NL A+ L + F +V + A L+E +G ++ G E GL Sbjct: 164 TNLARALDTL---------KQAGFWTVGLDESGARPLHEVDLTG-RTALVLGSEGEGLRR 213 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I P SLN+S A + ++E Sbjct: 214 LTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVARRR 251 >gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri] gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri A1501] gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 42/180 (23%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N L L+ P +K + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANTGCH-LHLIEPLGYELDDKRLRRA--GLDYHEYATLERH 60 Query: 75 SNLKEAIA---------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++L +A D ++A T + F V + ++F Sbjct: 61 ADLPSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRR--------------GDALLF 106 Query: 126 GRERWGLT--------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E GL NE+ + P+ P SLN+S V + V+E + E Sbjct: 107 GPESRGLPPDIRDALPNEQ------RLRLPMRPDSRSLNLSNTVAIAVYEAWRQHGFAME 160 >gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 274 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 19/168 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64 PQ + G V+IL Q N+G + R TQ + L W S K + A Sbjct: 119 PQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLW-STKVLRAGMGA 177 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVG 122 ++D L E ++ + A TA +LA A + V Sbjct: 178 HKLLD-------LYEGWSNQQVLSAITA-------PLLAATADAEQDLYSLKKDLLHPVA 223 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E G++ + +A + +S P++P SLN+S A + ++E + Sbjct: 224 WVMGSEGQGISEDLLAQAKG-VSIPIDPRVESLNVSTAAAICLFETLR 270 >gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT 11841] Length = 180 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + + K P +++L + N+G V R+ F + + L P + ++ Sbjct: 17 SAEEFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTAL 76 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D V + ++A+ L + + E +++L + R + Sbjct: 77 GAEDSVDWV-YYERTQDAVEHL--------KAEGYEVWAVEQVEGSVMLQDFRPDKAKKY 127 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 II G E G+ E + + I P SLN+S ++VWE Sbjct: 128 AIILGNEVKGVQQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176 >gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74 ++L + N+G + R +V P R ++ ++A A + VRV Sbjct: 90 VVLDGVEDPHNLGAIVRTAHAAGAGA-VIV-PERRAAGVTDVVAKAAAGALEHLPVVRV- 146 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +N+ A+ DL + R + L E ++I + ++ G E GL Sbjct: 147 TNINRALEDL--------KERGMWIYGLD--ERGTESYDQIDYAKKSVLVLGGEGKGLHE 196 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + ++ P+ SLN+S A ++++E V Sbjct: 197 QVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRRPV 236 >gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ] gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ] Length = 153 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G + R N + L L++P +K + + + Sbjct: 4 VILFQPEIPPNTGNIIRLCANTGCS-LHLIDPLGFELDDKRLRRA--GLDYHEYATLKRH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L + L ++A T + + SV + +FG E GL Sbjct: 61 ADLPSCLESLGRPRLFAFTTKGSQPYHSVAYRR--------------GDAFLFGPESRGL 106 Query: 133 TNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E E + P+ SLN+S V + V+E Sbjct: 107 PQEVRESLPPEQRLRLPMRSACRSLNLSNTVAVAVYEAWRQ 147 >gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1] gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1] Length = 168 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 20/171 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 6 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDISYY 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L++ + + +++ + E +FGRE GL Sbjct: 63 ESLEDFMEKMD-----------GQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLP- 110 Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182 EE + + P+N SLN+S V ++V+E + + V E Sbjct: 111 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHE 161 >gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320] gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 239 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R + ++ WP EK R +A ++ + +V + +AI Sbjct: 30 SHNVAAVIRTADAVGIPKIH-----AIWPEEKMRMLVSPAAGSNSWV-NVNTHPTIADAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + + A+ E I Q II G+E+ G++ E IAL++ Sbjct: 84 N--------TFRAQGMQVLATHLSDKAVDFRE-IDYTQPTCIIMGQEKTGISPEAIALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + N E A + ++L F Sbjct: 135 QDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESALTAEEQQILLF 188 >gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 280 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 16/175 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP+A ++ + V +L + N G V R + L + + KA +S Sbjct: 106 TPFA-EILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 164 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFS 117 + + ++EA+A L R+ +LA ++ ++ Sbjct: 165 VGSLFHLPVAVGVP-VEEAVAGL----------RDAGVRILAADGAGEDDLDAELDKGTM 213 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G +FG E WGL E L++A++ P++ SLN++ A + ++ Sbjct: 214 GGPTAWVFGNEAWGLPEETRELADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 268 >gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 245 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 14/169 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 LQN + +++L N+G R + +V P+D + AR + A Sbjct: 89 LQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLTAIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ +RV +NL + +L ++N V EA L + +G + ++ Sbjct: 147 EVVPLIRV-TNLARTLRELQ--------QKHNIWVVGTAGEATNTLYQTQLTGG-LALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245 >gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773] Length = 170 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 21/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + + V++ Sbjct: 5 IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWEHVQLVK 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + + T R ++ V + + + +FG+E GL Sbjct: 61 HDSLPDFLD--------TLRETDHLYLVSKFANYDYTQPDYSVTDGDHYFLFGKETTGLP 112 Query: 134 NEEIAL---SNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + + I P + SLN+S V ++++E + Sbjct: 113 --EVFMRQNPDKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153 >gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 157 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 10/164 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L +P++ N+G +AR L L+ P S+ A + ++V++ + Sbjct: 4 VALFEPEIAGNVGNIARTCAVVGAP-LHLIRPYGFRLSDAAVRRA--GMDYWEAVQLTQH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A + HF A A V A A V + ++FG E GL Sbjct: 61 ASFAQFEAHFARAFEAGR------VFAFTTKATVGYSEVRYRPGDVLLFGPESRGLPEAV 114 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 AL++ + P+ SLN++ +V + ++E + Sbjct: 115 RALASP-VRIPMQGGARSLNLAVSVGVGLYEAWRQLGFAPTPPP 157 >gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001] gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001] Length = 155 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 36/174 (20%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NL 77 L PQ+ N G VAR +L LV P S++ + +D L Sbjct: 2 LYQPQIPPNTGNVARTCAATA-QELHLVGPLGFEISDRTLRRAG-----LDYWPYVPLTL 55 Query: 78 KE---AIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 A + + A +A + A + ++FGRE Sbjct: 56 HADWPAFTGVQGRQGGRLVALSA---HGITPYTAFRFQPDDW-----------LLFGRES 101 Query: 130 WGLTNEEIALSNAIISFPV-----NPL--FPSLNISQAVLLMVWECMENSIVSS 176 GL E + ++A+++ P+ +P SLN+S AV ++++E + Sbjct: 102 DGLPAEPLQRADAVLTIPMRRSRHHPEGGVRSLNLSVAVGVVLFEALRQEADRP 155 >gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC 700780] gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC 700780] Length = 167 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ +N G +AR N L ++ P ++ + D + + + Sbjct: 5 IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDIYFY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + ++ +++ + + + N +FGRE GL Sbjct: 62 DSLDEFMGKMN-----------GQLYLISKFAEKVYSDADFTTEGNHYFLFGREDKGLPE 110 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + + + P+N SLN+S V ++V+E + Sbjct: 111 KFMREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150 >gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 151 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 25/168 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV- 73 I L +P++ N+G V R + + LV P W + R ++ ID V+V Sbjct: 2 RIALYEPEIAGNVGAVMRLGACLGV-NVDLVEPMGFAWEDRRVRRAAM---DYIDHVKVT 57 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F + ++A + TT +S+ + A + ++FG+E Sbjct: 58 RHAGFGPFRASVAPGRLVLFTT----KAEQSLHDFRFRADDV-----------LLFGKES 102 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G+ +E + + P+ P SLN++ A L + E + + Sbjct: 103 AGVPDEVAQACDERVRIPIRPEVRSLNLAIATALALGEALRQTGGLPP 150 >gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM 3645] gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM 3645] Length = 168 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 24/176 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L +P++ N G + R +L LV P +++ + + V Sbjct: 9 IVLHEPEIPPNTGNIGRTCVAIG-AKLWLVKPLGFLVNDRELKRA--GMDYWQHLEWEVV 65 Query: 75 SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+E + D F Y T R+ ++ I+ G E G Sbjct: 66 EDWAHLQERLKDRRFFYLTKTAKRSYTTVDFQLED---------------AIVLGAESKG 110 Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L E +A + IS P+ SLN+S + +E + ++ + + +P Sbjct: 111 LPPELLATTPENNISVPMRTEVRSLNLSATAATVAYEAVRQLTLAGQAKLPIGESP 166 >gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM 15897] Length = 242 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 23/156 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 V+IL Q N+G + R+ F Q+ + +P ++KA S+ A +D VR Sbjct: 98 VLILDGVQDPGNLGTILRSALAFGFKQIVM-SPDCVDLYNDKALRSTQGAVFHLDIVR-- 154 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L I +L + AT+ + I S + + G E Sbjct: 155 DDLHHVIPELQKLGVRVIATS--------------LHNASSIDDIKSTDKMAFVMGNEGN 200 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ +E IA+S+A + P++ + SLN+ A ++++ Sbjct: 201 GVRDETIAMSDASLYIPIDTM-ESLNVGVAAGIVMY 235 >gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136] Length = 296 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 23/177 (12%) Query: 2 TPYAPQ-LQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P P+ + A+ +I +VD NIG + R+ + + L + +A Sbjct: 137 APRTPEEVCRDARRVAVIHGVVDTT---NIGAIFRSAAALGIDAILLSPDSCDPLNRRAV 193 Query: 59 SSSANADCVIDSV---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 S + ++ R S+L+E + A T R+ + P+ + Sbjct: 194 RVSMGSVFLVPWTWLPRPVSSLRE-MGFCTASLALTDRS----VPIDYPE---------L 239 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E GL E ++ S+ ++ P+ SLN++ A + WE Sbjct: 240 KEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAASAVAFWELRARR 296 >gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus SA-01] gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus SA-01] Length = 149 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 23/159 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75 +L P++ +N G +AR L L+ P S+ + V R+ Sbjct: 5 VLFQPEIPQNTGNIARTAAALGWP-LHLIRPLGFRLSDPRLKRA--GLDYWPHVDLRLHD 61 Query: 76 NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +++ ++A +AR V G ++FG E GL Sbjct: 62 TWEAFWQSLPPGARVWAFSARGDTCLYGV------------SFQPGDY--LLFGPETRGL 107 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + L + P+ L SLN++ AV + +E Sbjct: 108 PPEVLTLFPG-VYIPMPGLVRSLNLAVAVGVAAYEAYRQ 145 >gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 184 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 14/146 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R F L +L LV P ++ A + + +L AI L Sbjct: 38 HNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGA----EEAVPWRHLDSAIEFLE 93 Query: 86 FIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R +++LA ++ + N+ + +I G E G+++E I ++ Sbjct: 94 QC-------RAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADY 146 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 + P SLN+S A + +++ Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIYDL 172 >gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273] Length = 248 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ +++L NIG + R + LV + + +SA A Sbjct: 92 AAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGALS 151 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +V +L + LH VLA A + I+ G Sbjct: 152 HMRVAKV-KSLVRCLELLHR----------EGIQVLATDMEAETNYTDADFRKATAIVLG 200 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL E + + ++ P+ SLN+S + +M++E M + Sbjct: 201 AEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMRQRL 247 >gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana] gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana] gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 222 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ F +T+L LV G A S +A + R F + Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61 Query: 77 LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L EA D + + A +NE F +N + G E Sbjct: 62 LIEARNYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107 Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166 GL+ +E + + + P + SLN++ A +++ Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144 >gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 273 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 13/169 (7%) Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P ++ +G V+++ NIG + R+ + + L + +A Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + ++ L ++IA L + TA +SV P + + E Sbjct: 167 SMGSVFLVPWTW----LDDSIASLSRLGFRTAAMALTDRSV--PLDDPALATE-----PR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL E I ++ ++ P+ SLN++ A + W+ Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264 >gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548] Length = 250 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + +NL E IA L K L + + F Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKDFKLA 198 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi] Length = 392 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 26/171 (15%) Query: 15 PVIILV---DPQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSA-- 62 PV + V +P+ N+G + RA+ F + L RL+ P +A S+ Sbjct: 167 PVRVFVAIENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPY 226 Query: 63 -------NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 N V++ + + + + I T L + + Sbjct: 227 VAIPDITNLFEVLEGAT---SFEAVVVAVDMIGGATPLP-LYRHPCLHALDGGARKRSQC 282 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V +FG E + E +A ++ + P SLN++ AV ++++ Sbjct: 283 TLPNLVFYLFGPEDGTIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330 >gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii KC4] Length = 254 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + +++L N+G + R + + + + R + +A +SA Sbjct: 89 EILATHPSCLLVLAYITDPRNLGAILRTAAAVGVEGVIIPSRRAAGLTAEALKASAGGAE 148 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + RV +NL + T + VL + A V + + ++ G Sbjct: 149 HVKVARV-TNLAQ----------TLRYLKEQGFWVLGAEADAKVSLWEAEWNEPLVVVIG 197 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL + ++ P P LN S A ++++E + + Sbjct: 198 GEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEVLRRQM 244 >gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 11/166 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ ++ L Q N+G + R F L + R + ++A Sbjct: 109 SLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGLLIPKDRSAPLTGTVMKAAAGTLP 168 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ RV +NL +++A L ++ F A +A L++ FSG + ++ G Sbjct: 169 LLTICRV-TNLSQSLAQL---------KKHGFWIYGAGGQAPQQLHQTSFSG-PICLVMG 217 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E+ GL + +++ P+ SLN++ A +++ E Sbjct: 218 NEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVILSEIRRQQ 263 >gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp. novicida GA99-3549] gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549] gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] Length = 155 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 24/156 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L +P++ N G + R N +L L+ P +K + + +++ Sbjct: 4 IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLKIY 60 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N E D I+A T + + + V + ++FG E G Sbjct: 61 KNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPETRG 105 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 L + + L + P++ SLN+S +V ++++ Sbjct: 106 LPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH] gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH] gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810] Length = 160 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + K + A + ++ ++FG E G+ Sbjct: 61 KTFEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021] gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + K + A + ++ ++FG E G+ Sbjct: 61 KTFEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330] Length = 302 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G ++L Q N+G V R+ + + L + + K + A ++ Sbjct: 153 QGDCVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHIHE 212 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRERWG 131 T R++ + + ++ E + Q IFG E G Sbjct: 213 RVD-------------LTQWRSQYHDRVLVTALSEHNNFSLYDLTLQQPSAWIFGNEGSG 259 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + ++ A + P+ SLNI+QA + ++E M + Sbjct: 260 VSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQRL 301 >gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittGG] gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG] Length = 246 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N V++L N+G R + +V P+D + R + A Sbjct: 89 LSNKQNPLVLVLDGVTDPHNLGACLRTADAAG-AEAVIV-PKDKSAQLTSIVRKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246 >gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501] Length = 261 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 23/157 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK-- 78 Q N+G + R + + L + K +SA A V +F S+LK Sbjct: 120 QDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWF---QVPIFISSDLKRI 176 Query: 79 -EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E + F I AT + + + I+ G E GL++ Sbjct: 177 VEKYKNNGFNIVATLPNTTQTYWHLQL--------------TKPTLILLGNEGSGLSDSL 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++L+N I+S P++ SLN++ A L+++E I Sbjct: 223 VSLANEIVSIPLSEGIESLNVAIATALILYEAXRQQI 259 >gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271] gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271] Length = 175 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I L P + N G ++R N T L L+ P +K + + V V Sbjct: 5 IALYQPLMPANTGNISRTCAATN-TPLHLIKPLGFSTDDKMLKRA--GLDYWEHVEVHYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLA---PKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L++ +A + ++ P+ + +G+ +FG+E G Sbjct: 62 ESLEDFLAFV----------GERPLYLITKFAPRIYCQADLAQNSAGEQ-FFLFGKETTG 110 Query: 132 LTNE--EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176 L + E ++ + P+N SLN+S ++++E + Sbjct: 111 LPADLMEERKAD-CLRIPMNDQHVRSLNLSNTANIVIYEALRQQAFEG 157 >gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 436 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 49/212 (23%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKAR 58 A + N V + V+ N G + R L V+P+ G + AR Sbjct: 203 SARDVLNGRPKLVSVPVETNEPGNAGTLIRVADAMG-ADCVLFAGDTVDPQSG---KAAR 258 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 SS+ + + AR RN K V +E + + G Sbjct: 259 SSAGSLFHIP----------------------VARERNIMKVVSMLRERGLAIAATAADG 296 Query: 119 ------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 Q +FG E GL E A ++ + P+ SLN++ A + ++ Sbjct: 297 EVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADYRVRIPIRGRAESLNLATAASICLF 356 Query: 167 EC----MENSIVSSEKNVKEQNTP--ATKGEL 192 E + + + + E++ P A EL Sbjct: 357 ESSKYQAKAAESARSGQISEEDVPEAAESDEL 388 >gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 152 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 ++LV P++ N G +AR + T L LV+P S++ + V+++ Sbjct: 5 VVLVAPEIPANTGNIARTCAATD-TPLHLVDPLGFRLSDRYLKRA--GLDYWQHVQLYRY 61 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 S L +A + F + + R + + V P + ++FG E Sbjct: 62 PSWSALVQAHPEARF-WCFSVRGKALYTEVTYQPGDW---------------LVFGSESR 105 Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + + L + P+ SLN+S AV + ++E + Sbjct: 106 GL--DPLFLETYPSVRIPLRGPVRSLNLSNAVAIALFEALRQQ 146 >gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4] gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. SIP3-4] Length = 249 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L++ P LV + N+G R + ++ P+D + R + Sbjct: 91 LESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A I + V + L+E F+ A + ++ Sbjct: 149 AAETIPFIAVTNLARTLRELQEAGVFVVGAAA------------DAPGNLFTTKLA--GP 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + ++S P+ SLN+S A + ++E Sbjct: 195 LALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQR 246 >gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14] Length = 290 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 22/155 (14%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDS---VRVF 74 P NIG + R+ F L + K+ +S A V+ S V Sbjct: 124 RPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEVV 183 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L A+ R + V + E Q V ++ G E GL Sbjct: 184 EWL--------------AKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGL 229 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + L + ++S P+ SLN S A ++++E Sbjct: 230 SAAWRDLCDHVVSIPMTGSASSLNASNAASVVLYE 264 >gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittAA] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2148] Length = 251 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 + + PV+ILV N+G R+ + +V P+D S R + Sbjct: 95 MVDEKDSPVLILVLDGVTDPHNLGACLRSADAAGVD--AVVVPKDKSADLSPTVRKVACG 152 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ VRV + L +I+ KS+ + Sbjct: 153 AGEIVPFVRVTNISRTLDALKERQVWIFGAAG---EAEKSIYDNDLTG-----------S 198 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + +I P+ SLN+S A + ++E + Sbjct: 199 MALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATGVCLFEVIRQR 250 >gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 255 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 22/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDS--- 70 ++IL NIG + R FN+ L L P PSE A +++ A ++ Sbjct: 104 IVILDQITDTHNIGSILRTSACFNIDALVL--PHHHSPSENASIAKAASGALDIVPLIYV 161 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129 + ++ ++ Y A + I + GQ IIFG E Sbjct: 162 TNIVKTMESLKKIGYWCYGF--------------DCNAKENIDEIKNFGQKRVIIFGSEE 207 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G+ + ++ P++ + SLN+S A + ++ Sbjct: 208 KGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAIGLYSIY 247 >gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 207 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 26/173 (15%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82 NIG +AR F + L L+ R S AD + F +L+EA Sbjct: 12 HNIGTMARCCTAFGVKSLVLIGSRQF-----NTFGSHGADGHVHF-EHFDSLEEAREKLK 65 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I + + A + F+G N I G E G+T + A+ Sbjct: 66 GERGCTQILG------------VEIVDDARAIESHPFTG-NTAFIMGNEGHGMTEAQKAI 112 Query: 140 SNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + P P SLN+S A +++ + E+ A + + Sbjct: 113 CDGFVYIPQYGPGTASLNVSVAASIVMHHFASWAGYEERSREGEKFIVAERPQ 165 >gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213] gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 159 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L ++ P GW +K R S + V + Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFGWDDKKLRRS---GLDYHEFVDIQK 59 Query: 74 FSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + N ++ + ++A T R N V L + ++FG E G Sbjct: 60 YKNFEDFLERAKPKRLFALTTRGEQNHSDV------KYELGD--------FLMFGPESRG 105 Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E+ +S I P+ S+N+S +V ++V+E Sbjct: 106 IPKPLLAEMPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQ 147 >gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644] Length = 505 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 13/164 (7%) Query: 19 LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 LV P Q ENIG R+ F + ++ L KA + A + R+ Sbjct: 354 LVLPFQDPENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPA-----AARLELRF 408 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ADL R + + ++ A ++ +I G E GL Sbjct: 409 GPALADL------CGREQFAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLAGIAT 462 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 P++P SLN + +V + ++E N+ Sbjct: 463 NWLQRR-RIPMSPRIESLNAAVSVAVALYEWRRGQPADWVANLA 505 >gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 6P18H1] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6] gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus CMCP6] Length = 228 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R L ++ V WP+E+ ++ SA A ++ V ++ +A+ Sbjct: 30 PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +A + ++ + V +I Q II G E+ G++ + AL++ Sbjct: 84 ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 I P+ + SLN+S A ++++E + E + A Sbjct: 135 QDIMIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180 >gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14] Length = 175 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N +A+ +L R + E +I+L+ + + Sbjct: 73 GAEFTVDW-KYVNNAVDAVDNL--------RKEGYIVYSIEQAEGSIMLDRLELDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 250 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 13/160 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q NIG + R LT++ L++ + KA + A + R F Sbjct: 104 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSLKF-RYFE 162 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ + T + R + + P E +E +V ++FG E G+ + Sbjct: 163 NL-SAVRNYP-----TLKERKIW--LTTPHEGVSCYSEEFKLSNSV-LVFGEEANGIEDF 213 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P SLN++QA + ++E + ++ Sbjct: 214 SVG---EKTMIPTLSNIESLNVAQAATIYLFEGLRQKMLK 250 >gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179] gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179] Length = 245 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 18/171 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ +++L N+G R + + + + + AR + A V Sbjct: 89 LQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDKSAQLTSVARKVACGAAEV 148 Query: 68 IDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +RV + LK D + ++ T EA + + +G + + Sbjct: 149 VPLIRVTNLARTLKTLQQDYNIWVVGTAG-------------EANSSIYQNKLTGA-LAL 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 195 VMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQRLA 245 >gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1] Length = 158 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 21/169 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + K + A + + ++FG E G+ Sbjct: 60 HKTFEAFLE------------SEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIP 107 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I P+ S+N+S +V + ++E N+ Sbjct: 108 MSILDKMPMEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQLGYEGAVNL 156 >gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17] gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17] Length = 289 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 28/154 (18%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71 N G V RA + V+ + K ++A + D Sbjct: 139 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 198 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + AD +Y T R P+E VL ++ SG +IFG E G Sbjct: 199 KVLRTVA---AD---VYGTDGRE---------PRELPEVLRDQDLSGVGKAVIFGNEARG 243 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 L + + I+ P+ SLN++ + +M+ Sbjct: 244 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688] gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp. MP688] Length = 249 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L++ P LV + N+G R + ++ P+D + R + Sbjct: 91 LESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A I + V + L+E F+ A + ++ Sbjct: 149 AAETIPFIAVTNLARTLRELQEAGVFVVGAAA------------DAPGNLFTTKL--DGP 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + ++S P+ SLN+S A + ++E Sbjct: 195 LALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQR 246 >gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri] gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri] Length = 170 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 16/167 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73 ++LV+P++ N G VAR+ + L LV+P + + + S VRV Sbjct: 13 AVVLVEPRIPGNTGCVARSCAAARVP-LHLVDPLFELDDARLKRA---GLDYWKSVCVRV 68 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + A + T R K L + A R ++FG E GL Sbjct: 69 HPSWEAFYAYWRGVETTEKRLVGFSK--LGARPHAETGAYRRGDW----LLFGSEDKGLR 122 Query: 134 NEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176 + + I P++ SLN+S + + ++E + Sbjct: 123 EDAMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQLDGPP 169 >gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102] Length = 258 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 11/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q Q G V+ L Q N+G + R + L + S K +SA Sbjct: 103 QTQLPFTGLVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWF 162 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + ++ V NLK AT +++ V+A +A + + + I+ G Sbjct: 163 RL-AMSVTENLK----------ATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSLILLG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL+ + A+++ + P++P SLN++ A LM++E Sbjct: 212 NEGAGLSADLAAIADKQVRIPLSPGVESLNVAIAAALMLYEARRQ 256 >gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC 700122] Length = 263 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 11/156 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N+G +AR+ + + + N R + SSA + + +V + Sbjct: 102 VVVLDHITDAGNLGAIARSAEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQV-A 160 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + R + N V E A + + ++ G E G+++ Sbjct: 161 NLNAVLE----------RLKKNGFWVAGASEQAHHTVWKAPLYGKIALVMGNEGSGISHL 210 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ P SLN++QA +++E + Sbjct: 211 MQDNCDFLVKLPQEGKVGSLNVAQASTAVMYEWLRQ 246 >gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205] gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205] Length = 249 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 23/157 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E A+ + + FSG +V I+ G E GL Sbjct: 165 HLKETTHTRVIGT----------MLD--EKALPIQQCDFSG-SVVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + + P+ SLN+S A + ++E Sbjct: 212 SQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQRTT 248 >gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755] gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165] Length = 159 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 21/171 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L ++ P W +K R S + V + Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + + R K + A + + ++FG E G+ Sbjct: 60 YKDFDDFLE------------RAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGIP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + I P+ S+N+S +V ++V+E + +E Sbjct: 108 KAILDSLPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVPRQE 158 >gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis MSMB43] Length = 247 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRRAKQ 247 >gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740] gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes] Length = 153 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+LV+P++ +N G + R + L L++P S+K + + + ++ Sbjct: 5 IVLVEPRIPQNTGNIGRLCAAT-QSALHLIHPLGFTLSQKEIKRA--GMDYWEHLELYEW 61 Query: 76 -NLK---EA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L+ EA + HF+ TT R F++ L P + FGRE Sbjct: 62 SSLEAFTEAHPFGESHFLL-TTKAKRAYFEASLPPSAY---------------LYFGRED 105 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + A A++ P+ SLN++ A ++++E + Sbjct: 106 AGLPQVLLEAHPQAMLKIPMKEGNRSLNLATATGIVLYEAIRQ 148 >gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010] gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010] Length = 289 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 28/156 (17%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV 71 + N G V RA + V+ + K ++A + D Sbjct: 137 RGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWA 196 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V + AD +Y T R P+E L ++ SG +IFG E Sbjct: 197 GEKVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEA 241 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 GL + + I+ P+ SLN++ + +M+ Sbjct: 242 RGLEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus DSM 2366] Length = 254 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V+IL N+G +AR + + + + + A +SA A I R Sbjct: 105 TPLVLILDGITDVRNMGAIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCR 164 Query: 73 VFSNLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 NL + + + I A T + + + P A I+ G E Sbjct: 165 -HPNLHKTALFLQECGLQIVACTEKTNDL---IYVPDYTAP-----------TAIVMGAE 209 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++NE + ++N + P+ SLN+S + ++++E + Sbjct: 210 DEGISNELMRMANHLAKIPMIGEISSLNVSVSAGIILYEAIRQR 253 >gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336] gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus 2336] Length = 161 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + ++ Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAQIKK 59 Query: 74 FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 E + + ++A T + E L +FG E G Sbjct: 60 HKTFNEFLNTEQPNRLFALT--TKGTPAHSQVNFELGDYL------------MFGPETRG 105 Query: 132 -----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L N + + I P+ S+N+S AV + V+E Sbjct: 106 IPMPILDN--LPTTQKI-RIPMIENSRSMNLSNAVAVTVYEAWRQ 147 >gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158] Length = 231 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP + R+ SA V+ ++ +A+ Sbjct: 30 PHNVSAVIRTADAVGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHRSIADAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T + +N + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 84 -------TCLKGQNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + +E ++ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREESTLEYSEQQRLLF 188 >gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum DSM 6724] Length = 239 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 11/159 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +++L Q N+G +AR ++ + + R + + +SA A I +R Sbjct: 91 KSIIVVLDHIQDPYNLGAIARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPVIR 150 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V SN+ + +L + ++ L ++ + ++ G E GL Sbjct: 151 V-SNIANFLREL----------KGKGWFIVGADLNTENLYNKVEYNFPLALVVGSEGEGL 199 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ P SLN+S AV +++++ E+ Sbjct: 200 HRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIRES 238 >gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG] Length = 250 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEELSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + +NL E IA L K L + + F Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium TW-7] Length = 247 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R+ + + + + + AR + A + ++V + Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T E + + +G + I+ G E G+ Sbjct: 160 RTLREIKDAGVWVVGTAG-------------ETDTHVFDASLTG-PMAIVMGAEGEGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN+S A + ++E + + Sbjct: 206 LTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLRQRNAN 246 >gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608] Length = 191 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 9/177 (5%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P ++L D + N+G V R+ F + + L P+ + ++ Sbjct: 15 EEFKEADKLPLTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGG 74 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE---RIFS 117 + + R F++ +EA+ +LH F+Y+ + L P+ A+ E Sbjct: 75 EDSVAW-RYFAHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAG 133 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ +I G E G+ + +S+ + P SLN+S +++WE ++ Sbjct: 134 DRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRLLL 190 >gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 158 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GLDYLEYA----S 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I HFI + ++ + +L A +I +N ++FGRE G+ + Sbjct: 58 LERHIDWQHFI----SSMKHFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ P SLN++ V + E + Sbjct: 114 HEAADYTLKIPMQPQARSLNLAMCVAITTGEALRQ 148 >gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter versatilis Ellin345] Length = 261 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 10/170 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L + N+G + R+ + + + R + A +SA A + RV + Sbjct: 95 VVVLDGIEDPHNLGALIRSADGAGVDGVVIPERRAVGVTGTAMKASAGAAEYVPIARV-T 153 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ +I DL +++ N +V E + I ++ ++ G E GL + Sbjct: 154 NIARSIEDL--------KDKYNVWTV-GLDERGTQNYDEIDYNMSLALVLGAEGKGLHDL 204 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++ P+ SLN+S A ++++E T Sbjct: 205 VRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSRQRRAKVAGAGSPGTT 254 >gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163] gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617] Length = 231 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP + R+ +A V+ ++ EA+A Sbjct: 30 PHNVSAVIRTADAVGVHEVHAV-----WPGSRMRTMVSAAAGSNSWVQVKTHRSIAEAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +N + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 --------CLKGQNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADG 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + +E ++ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREESTLEYSEQQRLLF 188 >gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2] Length = 156 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVR 72 I L +P++ N G + R N QL L+ P G+ E+ + A D + R Sbjct: 4 IALFEPEIPPNTGNIIRLAANTG-AQLHLIEPL-GFSLEEKKLRRAGLDYSEFAALQVHR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 FS +E++ TT +R + ++ F +V ++FG E GL Sbjct: 62 DFSAFQESVVGQRLFAMTTKGSRPH--------------SQACFQDGDV-LLFGPETRGL 106 Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ SLN+S AV + ++E Sbjct: 107 PEQILDSLPATQRLRLPMVAESRSLNLSNAVAVTLYEAWRQ 147 >gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida 3523] Length = 155 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 22/155 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L +P++ N G + R N +L L+ P +K + + +++ Sbjct: 4 IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPLGFELEDKQLRRA--GLDYHEFADLKIY 60 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N E + I+A T + + + V + ++FG E GL Sbjct: 61 KNFAEFYQKNEDKKIWACTTKAKQYYHQVDFSCDD--------------ILLFGPETRGL 106 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 + + L + P+ SLN+S +V ++++ Sbjct: 107 PVDVLELLKQTQLKIPMYKNSRSLNLSNSVAVILY 141 >gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG] gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 3655] gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittGG] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 305] Length = 260 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 100 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 157 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 158 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 202 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 203 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260 >gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus KT] gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus KT] Length = 154 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G + R N N T+L LV P +K + + V Sbjct: 4 IVLYQPEIPPNTGNIIRLCANSN-TRLHLVKPLGFELEDKQLKRA--GLDYHEYASLVVH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+A TT + + P +FG E G Sbjct: 61 EDWEACKQALAGRRTFALTTKGSTRHSDIRFLP---------------GNVFVFGPETRG 105 Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E A + I P+ P SLN+S + ++++E Sbjct: 106 LPEEIRAEFSPEYRIRLPMMPQSRSLNLSNSAAILLYEAWRQ 147 >gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein) [Synechococcus sp. RS9917] gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein) [Synechococcus sp. RS9917] Length = 161 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A I L +PQ+ N G +AR F L L L+ P ++ + Sbjct: 7 TAAPLRIALYEPQIPPNTGNIARTSAAFQLP-LALIEPLGFSLEDRYLKRA--GLDYWPH 63 Query: 71 VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V++ EA+ + + + E VL +F Sbjct: 64 VQLSSHSDVDAFLEALPTPFRLIGCSRHGGTALPQMRF--EPGDVL------------LF 109 Query: 126 GRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWEC 168 GRE GL + + + P+ SLN+S A L+ ++ Sbjct: 110 GREDLGLPESVRRRCDQLCTIPMPGGAAVRSLNLSVAAALVSFQA 154 >gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116] gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittII] gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866] gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846] gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031] gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047] Length = 160 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLSYEGAVNLPE 158 >gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684] Length = 245 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 21/169 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69 A + L N+G V R+ F + L P P KA +S A + Sbjct: 93 PAGPLCVYLHGIADPGNVGTVLRSALAFGAASVAL-GPGCADPFGPKAVRASMGAVFQVP 151 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R ++ A+ A + + G+ ++ G ER Sbjct: 152 LARASGDVA-ALPGTTIALDAHAGSGPLHGPL----------------GEPATLLIGAER 194 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + + P+ SLN + A + ++E + Sbjct: 195 AGLPEALLEACDRTARIPIRSE--SLNAAMAATIALYEATRGEDAGDHR 241 >gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii TW07627] Length = 229 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82 N+ + R + ++ WP + R+ + A V+ + +A+A Sbjct: 30 PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASTAAGSNSWVQVKTHRTIGDAVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + R + A+ E I I+ G+E+ G+T E + L++ Sbjct: 85 HL--------KGRGMQILATHLSDNAVDFRE-IDYTCPTCILMGQEKTGITKEALELADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 277 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 12/157 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P++++ + N+G + R + + +P+ + +S A +D V+ Sbjct: 129 PILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALFTLD---VY 185 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++ IY +N +V P+ + + + ++FG E++GL++ Sbjct: 186 ------LGEIETIYGILKKNHYRTLAV-TPEAKKFYFDADLK--GKIALVFGSEQYGLSS 236 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ +S P+ SLN++ + ++++E + Sbjct: 237 YARNHSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQ 273 >gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB18] gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB18] Length = 162 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 25/178 (14%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G I L P + +N G + R N+ + ++ P S++ + +D Sbjct: 3 AQGGMRIALFQPDIPQNTGTILRLCACLNV-EAHIIEPAGFPVSDRHFRRA--GMDYLDQ 59 Query: 71 VRV-----FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V + +S ++ A A + TT L + +A + + Sbjct: 60 VTIMRHDCWSKFEQWRAAAGCRLVLLTT----KGLTPYLDYRYSARDV-----------L 104 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + GRE G+ ++ A+++A + PV P SLN++ A +++ E + + +SE Sbjct: 105 LLGRESAGVPDDVAAVADARLVIPVQPGLRSLNVAMAAAMVLGEALRQTGSNSEAPQP 162 >gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032] gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter turicensis z3032] Length = 157 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 31/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N +L ++ P +K + +D Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHE---- 53 Query: 77 LKEAIADLHFIYATTARNRNN--FKSVLAPKEAAIVLNERIFSGQNVG------IIFGRE 128 + R+R+ F P+ + + + V ++FG E Sbjct: 54 -----------FTAVMRHRDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE 102 Query: 129 RWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + I P+ P S+N+S AV ++V+E Sbjct: 103 TRGLPASILDVLPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147 >gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216] Length = 178 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 21/174 (12%) Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P A + K PV ++L + + +N+G R F + ++ L P+ + ++ Sbjct: 12 PSAGEFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTA 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATT-----ARNRNNFKSVLAPKEAAIVLNE-RI 115 A+ + + ATT R + V+ E A++L+E R Sbjct: 72 LGAELTVAW--------------DYFAATTDCIAALRAQGYLIYVVEQVEGAVMLDEFRP 117 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GQ ++FG E G+ E + ++ I P S+N+S A +++W Sbjct: 118 RPGQKYALVFGNEVDGVAQEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLWNFF 171 >gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268] gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268] Length = 162 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV PQ+ N G + R N L L+ P +K + S+ +++ Sbjct: 4 IVLVYPQIHTNTGSIGRMCVNAGCP-LHLIKPLGFVIDDKHLRRA--GLDYWASLDLKIW 60 Query: 75 SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + E +A F +ATT N+ + + G +IFG E Sbjct: 61 ESWDEFMAANGKFKQRFFFATTKTNKLYY-------------EAKFQPGD--FLIFGSEG 105 Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GL EI +N I+ P++ SLN++ +V ++ +E + +I Sbjct: 106 HGLP-LEIMRTNRENCITIPMSGAGRSLNLATSVGIVTYEAIRQNIDK 152 >gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 230 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N + + I ++ N+ V R + ++ WP+ Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIH-----AIWPTS 55 Query: 56 KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109 + ++ SA V+ N+ +A+ L + AT N + + +E Sbjct: 56 RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187 >gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301] gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301] Length = 251 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 27/163 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADC------VID 69 IL + N+G R + ++ P+D + R + A V + Sbjct: 103 ILDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAVGLNATVRKVACGAAETVPFIAVTN 160 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R LKEA F+ TT A + I+ G E Sbjct: 161 LARTIRELKEA---GVFVIGTT--------------MDAPSTLINTKLDGPIAIVLGAEG 203 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ +A+++ P+ SLN+S A + ++E Sbjct: 204 DGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQR 246 >gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15] Length = 245 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 29/187 (15%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP Q N+ + + +L D N+ + R+ F L + +V P++G+ Sbjct: 1 MTPERLARIKQTLNTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A +A + ++ EAI + + + + K A L++R Sbjct: 58 RAFRKTAGGSYNWVTTHTHRSMDEAIQ--------SLKVQGH-------KLYAAQLSDRA 102 Query: 116 FSGQNV------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++V II G E G++ + A ++ I P+ + SLN+S A +++ E Sbjct: 103 IDFRDVDYTLPCTIILGNEVDGVSVDAAAQADEHIVIPMMGMVESLNVSSACAIVLSEAQ 162 Query: 170 ENSIVSS 176 ++ Sbjct: 163 RQRKLAG 169 >gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium vulgare Y25] Length = 262 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 19/172 (11%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + A L+++ + P ++L+ N+G + R+ F L +V + + + Sbjct: 98 LADVALSLKDNGQPPRLVLLDRVTDPHNVGAILRSSEVFGA--LAVVG-VQRHSAPETGA 154 Query: 60 SSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + A ++ NL +A+ +L R +L E+ Sbjct: 155 LAKTASGALERQPYIRVRNLGDAMDEL----------RAMGYLLLGLDGEGEQTIEQAIE 204 Query: 118 GQN---VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ V I+ G E GL + L + ++ P F SLN+S A + ++ Sbjct: 205 GRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVSNAAAVALY 256 >gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710b] gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei S13] gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 576] gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei GB8 horse 4] gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106b] gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei PRL-20] Length = 260 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 100 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 157 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 158 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 202 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 203 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260 >gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697] Length = 176 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P ++L + + NIG V R F + + L P + ++ Sbjct: 14 STEEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 73 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121 A+ +D + +N EA+ +L +N + E +I+LNE + Sbjct: 74 GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKY 124 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E G+ E I S+ I P SLN+S +++W+ Sbjct: 125 TIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172 >gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402] gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7] gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402] gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7] Length = 169 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 22/174 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+LV P + +N G + R N T L ++ P +K + D V D ++ V+ Sbjct: 4 IVLVHPAIPQNTGNIMRTCVATN-TSLHIIKPMSFELDDKKMKRA-GLDYVKDLNLYVYE 61 Query: 76 NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +E + HF + + + + + + FG E G Sbjct: 62 NYEEFEQKNPGEYHFF--------TRYSHLCYTDQDFSDDKKEHY------LFFGHEHDG 107 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + E + + + P++ SLN+S + ++E + + V+ Q Sbjct: 108 IPKEILTKHLDRCLRIPMSDKVRSLNLSNCAAICIYEVLRQQSYPNLSKVEVQK 161 >gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 227 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP+E +SA A +D V +++EAI Sbjct: 30 PNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEEAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L +++ V + A+ E I + II G E+ G + + L++ Sbjct: 84 EL--------KSQGMQVLVTNLSDTAVDFRE-IDYTKPTAIILGSEKVGASEKAKQLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + + + P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQRQAAGMYDNETSSVP 178 >gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306] Length = 267 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 11/153 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G + R + K +SA + I + R Sbjct: 124 VETSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTAR-----DT 178 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I D+ + R + +LA + + + +FG E GL+ E + Sbjct: 179 NIKDVL------GKLRASNLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDA 232 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ +S P+ SLN++ A + ++E + Sbjct: 233 ADIRVSIPLRGRAESLNLATAASICLYESAKAQ 265 >gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 155 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L +P++ N G + R N +L L+ P +K + + +++ Sbjct: 4 IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPLGFKLEDKQLRRA--GLDYHEFADLKIY 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N E + I+A T + + + V + ++FG E GL Sbjct: 61 KNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDD--------------ILLFGPETRGL 106 Query: 133 TNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVW 166 + + L + P++ SLN+S +V ++++ Sbjct: 107 PIDVLKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM 4541] Length = 226 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 27/180 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81 N+ + R+ + Q+ WP + + SS+A ++ + V S+ ++AI Sbjct: 19 PHNVSAIVRSADAIGIHQIH-----AIWPDQHVKLSVSSAAGSNSWV-KVISHSSTEDAI 72 Query: 82 ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A + + AT N + + +E I + I+ G+E+ G++ + + Sbjct: 73 AQIKAQGMQVLAT-----NLSEHAVDFRE--------IDYTRPTCIMMGQEKKGISQKAL 119 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 AL++ I P+ + SLN+S A L+++E ++ N +E + + + + + Sbjct: 120 ALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQRQLAGMYN-REYSLLSEQEQQEWLFE 178 >gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 155 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 30/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P++ +N G +AR LT+ L L+ P +KA + D V V Sbjct: 4 IVLFEPEIPQNTGNIARTCA---LTETKLHLIEPLGFSIGDKAVKRA--GLDYWDMVDVT 58 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F E D TT N+N V + I+FGRE Sbjct: 59 AYLDFETFLEENNDPELYLLTTHGNQNYADIVFKNDDY---------------IMFGRET 103 Query: 130 WGLTNEEIALS-NAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171 GL A N P+ +P SLN++ +V ++++E + Sbjct: 104 AGLPKAIHARYPNKRFRIPMKNHPHARSLNLANSVNIVLYEALRQ 148 >gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b] Length = 149 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + N Sbjct: 4 IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +Y +A+ + + V A + ++FG E GL Sbjct: 63 WQTFLQSHSQRRLYCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens] gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens] Length = 149 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + N Sbjct: 4 IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +Y +A+ + + V A + ++FG E GL Sbjct: 63 WQTFLQSHSQRRLYCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 181 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +I+L + + NIG V R F + ++ L P + ++ A + Sbjct: 27 PVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTALGATESVTWA-Y 85 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132 ++ + + +LH + E A L++ + G+ +IFG E G+ Sbjct: 86 EKDILQLLKELH--------QSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVEGV 137 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E ++L I P SLNIS + +++WE Sbjct: 138 QQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMWEI 173 >gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei DM98] gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 14] gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 91] gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 9] gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei B7210] gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 7894] gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei NCTC 13177] gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 112] gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei BCC215] gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei K96243] gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 23344] gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei SAVP1] gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10229] gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 668] gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1106a] gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei NCTC 10247] gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei FMH] gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei JHU] gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei 2002721280] gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pasteur 52237] gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei ATCC 10399] gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1655] gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 1710a] Length = 247 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 247 >gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991] Length = 244 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 13/155 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+L D Q N+G + R+ ++F + L S+K S+ A + + + Sbjct: 103 VILLDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQGALFHMQ--VIRT 160 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I L + E A ++ I + V ++FG E G++ E Sbjct: 161 DLSQIIDQL---------KEKKIPVIGTALENASAMS-TIEAVDRVALLFGNEGNGVSKE 210 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +A + + ++ F SLN++ A + +++ Sbjct: 211 LLAKCDETMYIEMH-AFESLNVAVAAGIAMYKFRR 244 >gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 291 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 10/171 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ P N+G + R+ L L + S+S + + +VR+ S Sbjct: 122 VVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGSFFALPTVRLPS 181 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++ + +A+ + ++ E A + +I G E WG++ Sbjct: 182 QRDIEPWLQ--------SAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMS 233 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 L +A++ P+ SLN++ A + ++E ++S + Q Sbjct: 234 AAYKELCDAVVQIPLVGSASSLNVACATSICLYEVSRQRRLASRASSTSQP 284 >gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 173 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75 ++L P++ +N G + R + L L+ P K R S+ + + + + Sbjct: 4 VVLCQPEIPQNTGNIMRTCVGSGVH-LHLIKPLGFKIDDTKLRRSAVDYYDAL-NFEIHE 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++Y +R K+ AP AI ++ ++FG E +G+ Sbjct: 62 DFESFQNEHPGTYLYL----SRYGRKTHSAPNYQAIK--------GDIYLVFGSESYGID 109 Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P N SLN+S AV + V+E + Sbjct: 110 RALLSKNIENTFRIPTNDKIRSLNLSNAVAITVYEVLRQ 148 >gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 189 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 15/182 (8%) Query: 4 YAPQLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P+I+++D N IG V R F + ++ L P + + ++ Sbjct: 15 SVEEFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTAL 74 Query: 63 NADCVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQ 119 A + V L E + + + + + E A++LN + G+ Sbjct: 75 GATETVVWEHVEDTLDLVEKLKEDNIKVFS-----------IEQAEGAVMLNNFKPEIGE 123 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + +IFG E G+ + ++ S+ +I P SLNIS + +++W+ + + Sbjct: 124 KIAVIFGNEVKGVQQKVVSASDGVIEIPQAGSKHSLNISVSTGVILWDLYSKLKAADYSS 183 Query: 180 VK 181 Sbjct: 184 AG 185 >gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 186 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++ +P++ N G R +L +V P SE + + + + Sbjct: 34 PHLVYHEPRIPGNTGSAIRLAAVTG-ARLHVVEPLGFDLSEAKVKRAGLDYHDLAVMDIH 92 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A+ DL ++A T R F V ++FG E G Sbjct: 93 PSF-DALVDLYPDSRVFAFTTRATVPFTEVTYSPTDL--------------LVFGPEPTG 137 Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + P+ P SLN++ + + V+E Sbjct: 138 LDDAVLNHPRITGEVRIPMLPGLRSLNLTNSASIAVYEAWRQ 179 >gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 392 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 16/164 (9%) Query: 16 VIILVD-PQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSANADCV 67 V + V+ P+ N+G + RA+ F + L RL+ P +A S+ + Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRN-----NFKSVLAPKEAAIVLNERIFSGQNVG 122 D +F L+ A + + A + L + R V Sbjct: 230 PDITNLFEVLEGATSFEAVVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E + E +A ++ + P SLN++ AV ++++ Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330 >gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei 406e] gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei Pakistan 9] Length = 231 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 71 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 128 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 129 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 173 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 174 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 231 >gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii A2-165] Length = 275 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 29/158 (18%) Query: 27 NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79 N+G + R A N LVNP P +A S + ++ + Sbjct: 134 NVGAIFRSAAALNM---DAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEK 190 Query: 80 ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ A + R+ + +E + + I+ G E GL+ Sbjct: 191 GLAQLNALGFKTAAMALSDRS-------------VSIDDEALAREPKLAIVLGTEGDGLS 237 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + IA + + P++ SLN++ A + W+ + Sbjct: 238 HTTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275 >gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054] Length = 260 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 25/162 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73 + V+ + N G V R + L V+P +G ++ V V Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGK-----CLRASTGSIFAIPVVV 166 Query: 74 FSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ AIADL + AT E A+ +R+ + + +FG E Sbjct: 167 APDVGAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEA 214 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ E AL++ + P++ SLN++ A + ++E Sbjct: 215 HGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256 >gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae R3021] Length = 246 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +RV +NL + DL ++ T A + Sbjct: 147 EIVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246 >gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 285 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 13/150 (8%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G + R + V S KA +SA + + R +N+K+ Sbjct: 129 VETNDPGNAGTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARS-TNVKD 187 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137 + L R +LA V + + +FG E GL E + Sbjct: 188 VLGQL----------RAQGMQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELL 237 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 A ++ +S P+ SLN++ A + ++E Sbjct: 238 AEADLRVSIPIRGRAESLNLATAASICMYE 267 >gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 21/169 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + K + A + + ++FG E G+ Sbjct: 60 HKTFEAFLE------------SEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIP 107 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I P+ S+N+S +V + V+E N+ Sbjct: 108 MSILDKMPMEQKIRIPMTANSRSMNLSNSVAVAVYEAWRQLGYEGAVNL 156 >gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212] Length = 152 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N + L L++P K + + + Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDGKRLQRA--GLDYREWATIIHY 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F K A A+ H I+A T + + + V + +FG E G Sbjct: 61 DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L E + I P+ S+N++ V ++++E Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147 >gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM 17393] Length = 175 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P+ ++L + + NIG V R F + + L P + ++ A Sbjct: 15 EEFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGA 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123 + +D + N EA+ +L + + E +I+L+E + + + Sbjct: 75 EFTVDW-KYVDNCVEAVDNL--------KKEGYTVYSVEQAEGSIMLDELSLDRTKKYAV 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172 >gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. JA-3-3Ab] Length = 151 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 ++LV P++ N G +AR T L LV+P S++ + + V++ Sbjct: 5 VVLVAPEIPANTGNIARTCAAT-RTPLHLVDPLGFRLSDRYLRRA--GLDYWEHVQLHRY 61 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130 S L +A + F + + R + + V P + ++FG E Sbjct: 62 PSWSALVQAHPEARF-WCFSVRGKALYTEVAYQPGDW---------------LVFGSESR 105 Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + + L + P++ SLN+S AV + ++E + S++ Sbjct: 106 GL--DPMFLETYPSVRIPLSGPVRSLNLSNAVAIALFEALRQQGFSTQ 151 >gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810] Length = 246 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R + ++ P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGA--MAVIAPKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246 >gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97] gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 94_M4241A] gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210] gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN R506] gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN V2475] gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551] gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis AF2122/97] gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C] gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str. Haarlem] gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11] gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 1435] gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46] gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A] gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 605] gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85] gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17] gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92] gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM 1503] gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A] gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu002] gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu003] gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu004] gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu005] gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu006] gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu007] gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu008] gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu009] gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CDC1551A] gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148] gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN 4207] Length = 260 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+ + N G V R + L R P ++ V V ++ Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AIADL + AT E A+ +R+ + + +FG E GL+ Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E AL++ + P++ SLN++ A + ++E Sbjct: 219 AEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256 >gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str. Paraca] gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 259 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 11/153 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + L L + K +SA A + V S+L ++ Sbjct: 118 QDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIA-VHSDLITQLS 176 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D+ ++A + A + I I+ G E GL+ + +L++ Sbjct: 177 DIQ----------KQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADY 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I P+ SLN++ L+++E + S Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQRLDS 259 >gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 158 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 19/168 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKKH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + K + A + + ++FG E G+ Sbjct: 61 KTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPM 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + I P+ S+N+S +V + V+E N+ Sbjct: 109 DILNSMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAVNI 156 >gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica] Length = 170 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + + + + Sbjct: 12 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRA--GLDYHEFANIKQH 68 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D H +F + A + + ++FG E GL + Sbjct: 69 -----HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 123 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V ++V+E Sbjct: 124 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 160 >gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 169 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +PQ+ N G +AR N + L LV +K + + V + Sbjct: 6 IVLFEPQIPANTGNIARTCAATN-SPLHLVGQLGFSTDDKHLKRA--GLDYWNDVDITYH 62 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132 +L+ + L + + + A + + + IFG+E GL Sbjct: 63 DSLEAFMEYL------------GNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGL 110 Query: 133 TNEEIALSNA--IISFPVNP-LFPSLNISQAVLLMVWECMENS 172 EE + + P+N SLN+S ++V+E + Sbjct: 111 P-EEFMREHEESCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQ 152 >gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304] Length = 294 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEAIA 82 N G + R L LV+ + K S+A + + V + ++ EA Sbjct: 150 PGNAGTIIRVADAAGCPALILVDDCVDVTNPKVVRSTAGSLFHLPIVTLSTDDFFTEAAR 209 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A A + +++ P +++ S Q + I+FG E GL + I + Sbjct: 210 LGLPVCAADAYGTDQVEAIPLPD----LMDSLKSSSQPLCILFGNEARGLDDSLINRCQS 265 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ SLN++ + ++ + + Sbjct: 266 AVRIPLYGRAESLNVAMSASIIAYSLAMS 294 >gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia pseudomallei MSHR346] Length = 247 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQRGAKK 247 >gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168] gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168] Length = 244 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL Q N+G + R + L R + +SA A + +V + Sbjct: 96 IIILDQVQDPHNLGAIIRTAYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVSN 155 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + D+ T + + + VG++ G E G+ Sbjct: 156 INYTIAD-LKDMGLWI--TGTDVRGTRPYYSADYKGP-----------VGLVIGNEGKGM 201 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P++ SLN S A ++++E + Sbjct: 202 RRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241 >gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942] Length = 234 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + PQ Q ++I V+ Q N+G + R L L K Sbjct: 71 IAARQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLR 130 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +SA + + ++L + + + + + P+ + + + Sbjct: 131 ASAGQWFRLPIA-IATDLGQTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--R 179 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL+ + A++++ ++ P SLN++ A L+++E Sbjct: 180 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232 >gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 177 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q VI+L + + NIG V R F + ++ L P + + ++ A + Sbjct: 19 QAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGATDSV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 V L I L ++ + + E A LN+ +I Q +IFG Sbjct: 79 AWEYVNETLP-LIEQL--------KSNSYETLAVEQAENATFLNDFKITQNQKYALIFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ + + S+ ++ P SLNIS + ++VW+ Sbjct: 130 EVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWDLWS 172 >gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047] Length = 246 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R + +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAG-SVAVIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T E A + + +G Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG-------------EVAETIYQSKLTG-P 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246 >gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus MO6-24/O] Length = 228 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R L ++ V WP+E+ ++ SA A ++ V ++ +A+ Sbjct: 30 PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +A + ++ + V +I Q II G E+ G++ + AL++ Sbjct: 84 ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 I P+ + SLN+S A ++++E + E + A Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180 >gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like [Xenopus (Silurana) tropicalis] Length = 158 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 39/179 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G + R N L L+ P ++ + +S RV Sbjct: 4 IVLVEPEIPPNTGNIIRLAANTGCA-LHLIEPLGFSMEDRLLRRA--GLDYHESARV--- 57 Query: 77 LKEAIADLHFIYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVG----------II 124 R+ + + + G ++ Sbjct: 58 -----------------QRHADWPSFMRTARPDPARMLAMTTHGAQPVHATAFRPGDWLV 100 Query: 125 FGRERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 FG E GLT E A S + P+ P SLN+S AV + V+E + + Sbjct: 101 FGAETRGLTPALRETFAPSQRL-RLPMVPGQRSLNLSNAVAVTVFEAWRQNGFAMPDQA 158 >gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens NRL30031/H210] Length = 263 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 23/172 (13%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G ++L Q N G + R+ + Q+ N S K + A ++ Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRAGMGAHFLLS- 167 Query: 71 VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +FS ++ E H I+AT RN + Q +F Sbjct: 168 --IFSRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQTCAWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E G++ ++A + P+ SLN++ A + ++E M I + Sbjct: 211 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262 >gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE] gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae PittEE] Length = 160 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + + + F L K + + G ++FG E G+ Sbjct: 61 KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAINLPE 158 >gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 162 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRA--GLDYHEFANIKQH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D H +F + A + + ++FG E GL + Sbjct: 61 -----HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 115 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V ++V+E Sbjct: 116 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 152 >gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris] gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris] Length = 149 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + N Sbjct: 4 IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ +A+ + + V A + ++FG E GL Sbjct: 63 WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax benzoatilyticus JA2] gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax benzoatilyticus JA2] Length = 156 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 25/170 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G V R N +L LV P +K + + R Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGC-RLHLVEPLGYSMDDKQLRRA--GLDYHEYAPVRRH 60 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + D ++A T R + + A ++FG E Sbjct: 61 ASWDALLESERPDPARMFAFTTRG---SHPLAEQRWQAGDW-----------LVFGAESA 106 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL E +A + + P+ SLN+S AV + V++ + + Sbjct: 107 GLPAELLARFPDSQRVRLPMRAGQRSLNLSNAVAVAVFDAWRQAGYAGAA 156 >gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 147 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R M F L ++ P K +S A + +++ + N + + Sbjct: 4 GNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIRASMGAIFHL-NIQYYDNFESYYQEYK 62 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + + +L +I + ++FG E GL + + + + Sbjct: 63 Y--------HEFYPFML----KGAKNIHQISTNNVHSLVFGNESSGLDDTYLNYGQS-VF 109 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 P + SLN+S A+ L ++ + E Sbjct: 110 IPHSETIDSLNLSMALGLTLFHFSKEQFQRKE 141 >gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii] Length = 220 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 26/156 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + NIG +AR+ F ++++ LV + + S + S+ + R F + Sbjct: 5 VVVHNVAKRHNIGTLARSATAFGVSEMILVG-KKDFNSFGSHGSAHHVRF-----RHFHS 58 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L EA + E A+ +++ F ++ + G E G Sbjct: 59 LLEARDYLKGIGCDICG-------------VEITEGAVAVHKHPFQ-RSTAFLLGNEGTG 104 Query: 132 LTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVW 166 L+ +E+ + + P V SLN++ A +++ Sbjct: 105 LSPKEMEICDFFTYIPQVGSGTASLNVTVAASIVLH 140 >gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 230 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N + + I ++ NI V R + Q+ WP+ Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH-----AIWPTS 55 Query: 56 KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109 + ++ SA V+ N+ +A+ L + AT N + + +E Sbjct: 56 RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187 >gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101] Length = 160 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 17/163 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P ++L P++ N G VAR T+L L+ P S++ + V + Sbjct: 2 PRLVLFQPEIPPNTGNVARTCAAT-CTELHLIEPLGFEISDRTLKRA--GLDYWPWVNLH 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + A A + +LA + + ++FGRE GL Sbjct: 59 RHADWA--------AFRLEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPL 110 Query: 135 EEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171 E +A ++A ++ P+ SLN++ A ++++E + Sbjct: 111 EVVADADACLAIPMPGSVDHGGGVRSLNLATAAGVVLFEALRQ 153 >gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 279 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 8/145 (5%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG V R+ + LV P P +A S + R+ S A + Sbjct: 136 NIGAVFRSAAALGI-DAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVP 194 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + R+ + LA + AI L++ G + ++ G E GL IA + + Sbjct: 195 LL-----RSLGFSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGLAPSTIANCDYTV 249 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P++ SLN++ A + WE Sbjct: 250 KIPMDHDVDSLNVAAASAVAFWELR 274 >gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 164 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 35/182 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G V R N +L LV P +K + + +V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GLDYHEYAQVL-- 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----------IIFG 126 R+ + + + + A L G ++FG Sbjct: 59 ----------------RHASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFG 102 Query: 127 RERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 E GL E ++ + P+ P SLN+S V + V+E + + + Sbjct: 103 AETRGLAPDVRESFPMAQRL-RVPMQPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAAA 161 Query: 184 NT 185 + Sbjct: 162 DQ 163 >gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331] gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 331] Length = 270 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 L + P + IL + N+G R+ F + ++ P+D + R + Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + + + +I T A L + I Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ I+ G E GL + + P+ SLN+S A + ++E + Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269 >gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016] gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 157 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L +P++ +N G +AR ++L L+ P EK + +D + Sbjct: 7 IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAG-----LDYWKYLDL 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--- 132 L + +L R R + + I+FG+E GL Sbjct: 61 TLYDCYEEL--------RERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDK 112 Query: 133 ---TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 +N E I P+ SLN+S AV ++V+E + Sbjct: 113 IRDSNPE-----KNIRLPMIKTTTRSLNLSNAVAIVVYEALRQ 150 >gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555] gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555] Length = 155 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L +P++ +N G +AR ++L L+ P EK + +D + Sbjct: 5 IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAG-----LDYWKYLDL 58 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--- 132 L + +L R R + + I+FG+E GL Sbjct: 59 TLYDCYEEL--------RERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDK 110 Query: 133 ---TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 +N E I P+ SLN+S AV ++V+E + Sbjct: 111 IRDSNPE-----KNIRLPMIKTTTRSLNLSNAVAIVVYEALRQ 148 >gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter putative symbiont of Hydra magnipapillata] Length = 154 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 35/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----------NA- 64 I+LV+P++ N G V R N +L LV P +K + +A Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRHAS 62 Query: 65 -DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +D+ R + TT R+ F+ P + + +E V + Sbjct: 63 WQHFLDAERPAPD--------RLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRM 114 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 F ER + P+ P SLN+S AV + V+E Sbjct: 115 SFSPERS-------------LRLPMRPDQRSLNLSNAVAVTVFEAWRQ 149 >gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236] gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236] Length = 162 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRA--GLDYHEFADIKHH 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D H + + + A + + N ++FG E GL Sbjct: 61 -----HDYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTV 115 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I P+ S+N+S AV ++V+E Sbjct: 116 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 152 >gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 258 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + PQ Q ++I V+ Q N+G + R L L K Sbjct: 95 IAARQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLR 154 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +SA + + ++L + + + + + P+ + + + Sbjct: 155 ASAGQWFRLPIA-IATDLGQTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--R 203 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL+ + A++++ ++ P SLN++ A L+++E Sbjct: 204 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 256 >gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda FL6-60] Length = 156 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 37/168 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N L L+ P +K + + + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRA--GLDYHEFASI--- 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126 R++ S E L G ++FG Sbjct: 58 -----------------RRHHDYSAFLDGEKPTRLFALTTKGTPAHSEVTYRDGDYLLFG 100 Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL + + + + I P+ S+N+S AV ++V+E Sbjct: 101 PETRGLPSTILDSLPAAQKI-RIPMLASSRSMNLSNAVSVVVYEAWRQ 147 >gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 13/170 (7%) Query: 5 APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 AP +A P ++LV Q N+G V R+ F + + L R S ++A Sbjct: 135 APASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAA 194 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++D R +NL A+ L ++ F A EA+ L E F+G Sbjct: 195 GTAALLDICRT-TNLAGALGTL---------KKHGFWIYGASGEASGNLYETDFTG-PTC 243 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E+ G+ + +++ P+ SLN+S A +M+ E Sbjct: 244 LVLGNEQKGIRPLLKKHCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRRQ 293 >gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F] Length = 163 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 19/166 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70 ++L PQ N G +AR+ FN T L L++P + +++ + D + Sbjct: 3 SKINVVLYQPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRA--GLDYWDHLN 59 Query: 71 VRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ +++ + I D + T N I E + Q + ++FG Sbjct: 60 LKQYADFDDFIKQNQIDDNLFLFTKKANNYLSN---------INFKEYLDHDQRIYLVFG 110 Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E GL + + N ++ P++ S N++ +V+ ++E Sbjct: 111 QETNGLPEQLLNKYQNNLVKIPMHNAIRSFNLANSVICALYELSRQ 156 >gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 249 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRAASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E+A+ L + FSG V I+ G E GL Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPLQKCDFSG-PVVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + + P++ SLN+S A + ++E Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1] Length = 176 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 23/172 (13%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +++ K P+II++D N IG V R F + ++ L P R ++ + Sbjct: 16 EFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGST 75 Query: 66 CVIDSVRVFSNLK-------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +D V + L E + A +A N F Sbjct: 76 ETVDWEYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLP---------------QPN 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E G++ E + +S+ +I P SLNIS + +++W+ Sbjct: 121 TKYAFVFGNEVKGVSQEVVDISDTVIEIPQYGTKHSLNISVSAGVVIWDVFS 172 >gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC 43969] Length = 233 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WPS + + +A V+ ++ +AIA Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPSTEMYTRLSAAAGSNSWVQVKTHPHITDAIA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L +++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 85 HL--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVLPLVEQQRLLF 188 >gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 176 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 14/157 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G V R F L ++ L P + ++ A+ +D Sbjct: 27 IVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDW----- 81 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIFGRERWGL 132 E I D I R + +V + + E + +LNE + Q + I+ G E G+ Sbjct: 82 ---EYIEDTVHIV---DRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGV 135 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E I SN I P S+N+S +++W+ Sbjct: 136 QQEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLF 172 >gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 256 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 +L + P++ +L N+G R ++ +V P+D + AR + Sbjct: 97 ELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLTSIARKVACG 154 Query: 64 ADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV +NL + DL ++ T A + Sbjct: 155 AAETVPLIRV-TNLARTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLT 199 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 200 GSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLAA 256 >gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 196 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 N+ + R+ F + ++ L+ +P + SS +A +++VR +L A+ Sbjct: 34 PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETVRHKDAASLAAALK 92 Query: 83 DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 F + AT+ E A+ L + + II G E G+ + + Sbjct: 93 GQGFRLVATSFT------------ETAVPLQKWDLT-TKTAIILGNEHSGVDEDLAPHVD 139 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + P+ + SLN+S A ++++E + Sbjct: 140 GALYIPMMGMVQSLNVSVAAAVILYEGFRQLEAAGRYGAP 179 >gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Pseudoalteromonas haloplanktis ANT/505] Length = 247 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 21/163 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V P+D + AR + A + ++V + Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHA-VIV-PKDKSAKLNGTARKVACGAAETVPLIQVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ T V + I+ G E G+ Sbjct: 158 LARTLREIKDAGVWVVGTAG---ETDNHVFD-----------ASLTGPMAIVMGAEGEGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN+S A + ++E + + Sbjct: 204 RRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLRQRNAN 246 >gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016] gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016] Length = 228 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R L ++ V WP+E+ ++ SA A ++ V ++ +A+ Sbjct: 30 PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +A + ++ + V +I Q II G E+ G++ + AL++ Sbjct: 84 ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 I P+ + SLN+S A ++++E + E + A Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180 >gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter pomorum DM001] Length = 318 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 15/187 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-- 58 + P GPV++L NIG + R+ F L V R+ P E A Sbjct: 144 LPPMPLDEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNA-PEETAVLA 201 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +++ A + VR NL AI L T L+ F G Sbjct: 202 KAASGALETVPMVREV-NLSRAIEQLQKAGCWTVGL----------DAGGTTLDGASFDG 250 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + V ++ G E GL + I + SLN+S A + ++E M + S+ + Sbjct: 251 RRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELMRRGMPSAYQ 310 Query: 179 NVKEQNT 185 + Sbjct: 311 KAAAKKP 317 >gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1] Length = 249 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E+A+ L + FSG V I+ G E GL Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPLQKCDFSGA-VVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + + P++ SLN+S A + ++E Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122] Length = 332 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81 N+G + R+ + LV P P ++ S + R+ ++ + + Sbjct: 192 NVGAIFRSAAALGV-DAVLVAPTCCDPLYRRSVRVSMGTVFQVPWTRIGNDAHDWPRAGL 250 Query: 82 ADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +LH + YAT A + ++ + + R+ + + + ++FG E GLT I Sbjct: 251 EELHRLGYATAA--------MALSDDSIPLDDARLAACERLALVFGTEGDGLTARTIEGC 302 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P+ SLN++ A + WE Sbjct: 303 DYTVRIPMAHHVDSLNVAAASAVAFWELCR 332 >gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] Length = 279 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 8/145 (5%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG V R+ + LV P P +A S + R+ S A + Sbjct: 136 NIGAVFRSAAALGI-DAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVP 194 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R+ + LA + AI L+ ER+ + + ++ G E GL IA + + Sbjct: 195 LL-----RSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDGLAPSTIANCDYTV 249 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P++ SLN++ A + WE Sbjct: 250 KIPMDHEVDSLNVAAASAVAFWELR 274 >gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp. ELB17] Length = 266 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 28/178 (15%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L NS K P ++IL N+G R + Q +V P+D + AR + A Sbjct: 108 LANSEKPPFLLILDGVTDPHNLGACMRTADAVGV-QAVIV-PKDKSATLTPVARKVACGA 165 Query: 65 DCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + VRV + L+E ++ T A + + Sbjct: 166 AETVPFVRVTNLARLLRTLQE---QGVWLVGTAG--------------EASITLHQADLT 208 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +I+ P+ SLN+S A + ++E + Sbjct: 209 GPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQRSAKG 266 >gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM 9187] Length = 245 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R + L + + + AR + A + ++V + Sbjct: 100 VLDGVTDPHNLGACLRTADAAGVHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A ++ ++ G E G+ Sbjct: 160 RTLRELKERGVWVVGTAG--------------EATHDVFAAKLTGSLALVMGAEGDGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 LTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVRQR 243 >gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 16/182 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + +I + + E A ++ S+ P + + Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSI--SIDNP---------ILATEPK 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + + Sbjct: 216 LAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275 Query: 181 KE 182 + Sbjct: 276 DD 277 >gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 170 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P + N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN---TELHLIEPLGFSTDDKYMKRA--GLDYWDKVKIT 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL + T N + V A + + + +FG+E GL Sbjct: 60 YHPNLPAFLE-------TIPENGELY-IVSKFASKAYTEADYTNTEKEHYFLFGKETTGL 111 Query: 133 TNEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181 E+ + I P N +LN+S ++V+E + + + Sbjct: 112 P--EMFMRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQQGFPNLETTH 162 >gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 265 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 17/146 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSN--LKEA 80 EN+G + RA F L++ R G P R S+ +A + + L + Sbjct: 127 PENLGSLIRAGSAFG-ADAILMDDRCGDPYSRRALRVSTGHAFKIP----IVETSNLLDQ 181 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + AR+ E+AI L + ++FG E +GL + A++ Sbjct: 182 LN--------VARSLGFQLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMA 233 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P++ SLN+S A + ++ Sbjct: 234 DRCVTIPMSRGSDSLNVSMAAGVFLY 259 >gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 281 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 21/170 (12%) Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ S+K P+I++ + P+ NIG + R NL + + NP+ + SS Sbjct: 127 LQLSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVG--- 183 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVG 122 VF+ TT+ K A + +I++ Sbjct: 184 -----CVFTT--------KIATGTTSEIIAYLKEHNIATYCAALTASKIYTTVDYTSGSA 230 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ E ++ SN I P+ S+N+S A ++++E Sbjct: 231 IVVGTEATGLSKEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIFEAKRQR 280 >gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 155 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 15/167 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+ P++ N G R L LV P S+ + + V V Sbjct: 2 PIQIVFHTPEIPGNTGNAIRLAAVTG-AHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTV 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ +L K V+A + + + ++FG+E GL Sbjct: 61 HPTIEHLWEEL------------GHKRVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLP 108 Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E E + + P+ SLN++ + + +E K Sbjct: 109 AEVAEDPHVDLAVRIPMLEGRRSLNLANSASIATYEAWRQLGYPGGK 155 >gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR51-B] Length = 252 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 17/174 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ +++L N+G R+ +T + + + R + A Sbjct: 89 QRVAETSTPLLLVLDGVTDPHNLGACLRSADAAGVTAVIVPKNNSADLTPAVRKVACGAA 148 Query: 66 CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + VRV L A+ ++ TT A + Sbjct: 149 EAVPFVRVTNLVRTLAALQAEGVWVVGTTG--------------DAEQSLYAQDFAGPIA 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G+ + ++ P+ SLN+S A + ++E + V + Sbjct: 195 LVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVRQRSVGT 248 >gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC 33638] Length = 231 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ S++ EAI Sbjct: 30 PHNVSAIIRTADAVGIHQIH-----AIWPTPEMYTRLSSAAGSNSWVQVKTHSDITEAI- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ + A+ E I + I+ G+E+ G++ E +A+++ Sbjct: 84 -------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMADK 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + Q+ + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYRRTQSVLSEDEQQRLLFE 189 >gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16] Length = 227 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP+E +SA A +D V ++++AI Sbjct: 30 PNNVSAVIRTADATGVHKVHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEDAIN 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L +++ V E A+ E I + II G E+ G + + L++ Sbjct: 84 EL--------KSQGMQVLVTNLSETAVDFRE-IDYTKPTAIILGSEKTGASEQAKQLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + + P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSAIP 178 >gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM 12145] Length = 255 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 26/176 (14%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62 PQ+ + P+I IL + N G +AR + +V P+ G + A +SA Sbjct: 98 PQVYEKGETPLILILDNITDVRNFGAIARTAECSGVH--AIVIPKRGAAQINPDAVKTSA 155 Query: 63 NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A + R +L + + + L + T + +K Sbjct: 156 GALYKVPVCR-HDSLLQILRFLKDSGLQIVSCTEKTDDLIYKPDYTV------------- 201 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G++ E I S+ + P+ SLN+S + ++++E + + Sbjct: 202 --PTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIESLNVSVSAGIILYEAVRQRL 255 >gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493] gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493] Length = 270 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 L + P + IL + N+G R+ F + ++ P+D + R + Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + + + +I T A L + I Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ I+ G E GL + + P+ SLN+S A + ++E + Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269 >gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis TXDOH] Length = 247 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 25/176 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGV 245 >gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis EO147] gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia oklahomensis C6786] Length = 247 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQRGAKR 247 >gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU Goat Q177'] gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA 334] gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154] Length = 270 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 L + P + IL + N+G R+ F + ++ P+D + R + Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + + + +I T A L + I Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ I+ G E GL + + P+ SLN+S A + ++E + Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269 >gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium sp. YO3AOP1] Length = 250 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 12/164 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++IL +N+G + R F ++ + + R +E +S A + + Sbjct: 96 KGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVVKASTGAVFHLPIAK 155 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L+ I + E I + +I G E G+ Sbjct: 156 V-GSLRNVIEKFKKKGG-----------WVVAIEKGGRNIAEIDFPYPIALIVGSEGKGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ I + P+ SLN+S A + +WE + I Sbjct: 204 SKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDG 247 >gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R+ + + + R + AR + A + ++V + Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T E + + +G + I+ G E G+ Sbjct: 160 RTLREIKDAGVWVVGTAG-------------ETDNHVFDASLTG-PMAIVMGAEGEGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN+S A + ++E + V+ Sbjct: 206 LTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLRQRSVN 246 >gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 32/169 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ +N G +AR F++T L L+ P +K + V++ Sbjct: 3 ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRA--GLDYWPLVKLKNY 59 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F+N K++ + I A + +N K ++ ++FGRE G Sbjct: 60 SNFNNFKDSKKN-KRIIAFSKKNGVYLKDFRF--------------HEDDILLFGREDTG 104 Query: 132 LTNEEIALSNAIISF--P----VNPL---FPSLNISQAVLLMVWECMEN 171 L N I SN++IS P N SLN+S A + ++E + Sbjct: 105 LPNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYKQ 153 >gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 230 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N + + I ++ N+ V R + ++ WP+ Sbjct: 1 MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVH-----AIWPTS 55 Query: 56 KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109 + ++ SA V+ N+ +A+ L + AT + + + +E Sbjct: 56 RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----HLSEHAVDFRE--- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187 >gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 242 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L + ++IL + N+G +AR + + + R + A +S A Sbjct: 87 PALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKASTGAL 146 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + VRV + L + A +++ T + + + + V Sbjct: 147 QHVPIVRVTNLSQTLDKLKAANFWVFGT---------------DMDGTVYSKWNTKGKVA 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G+ + +I+ P+ SLN S A ++++E N + Sbjct: 192 LIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNRL 242 >gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii] gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii] gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii] gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii] Length = 157 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++LV PQ+ N G AR L L LV P + + V+V Sbjct: 3 VVLVSPQIPGNTGTTARTCAAV-LAGLHLVKPLGFSIEDSKLKRA--GLDYWKYIVVKVH 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + R + K ++A + + ++FG E GL Sbjct: 60 ESWPHFLDYF--------RQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAP 111 Query: 135 EEIALSNAIIS------FPVNPLF-PSLNISQAVLLMVWECMEN 171 E + + P+N F LN+S +V + V+E + Sbjct: 112 EIHEECSTGVHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQ 155 >gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20] gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20] Length = 170 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAILHLIEPLGFELDDKHVKRA--GLDYWDHVQLVK 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++L + + T +++ V + S + +FG+E GL Sbjct: 61 HASLPDFLE--------TLTEKDHLYLVSKFANMDYTQPDYAESQGDHYFLFGKETTGLP 112 Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P + SLN+S V ++++E + Sbjct: 113 --EVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153 >gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 249 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E+A+ + + FSG V I+ G E GL Sbjct: 165 HLKETTHTRVIGT----------MLD--ESAMPIQKCDFSG-PVVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + + P++ SLN+S A + ++E Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591] Length = 230 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 85/204 (41%), Gaps = 25/204 (12%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N+ + + + ++ N+ V R + Q+ V WP+ Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTS 55 Query: 56 KARSS---SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + ++ +A ++ + V+ +++A+ L + + A V Sbjct: 56 RMKTLVSTAAGSNSWV-QVKTHRTIQDAVGHLKM---------QGMQILATNLSAGAVDF 105 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + I+ G+E+ G++ + +AL++ I P+ + SLN+S A L+++E Sbjct: 106 RDVDYTRPTCILLGQEKTGISADALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165 Query: 173 IVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E + Sbjct: 166 QLAGMY--RREDSPLDEEEQQRLM 187 >gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11] Length = 229 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIAD 83 N+ + R + ++ V WP+E+ + SA A +D V N+++A A Sbjct: 32 NVSAIVRTADATGIHKIHAV-----WPTEQMQMLGHTSAGARNWVD-VETHKNIEDAFA- 84 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T + + + A+ E I + II G E+ G++ + +A+++ Sbjct: 85 -------TLKEQGMQILATNLSDTAVDFRE-IDYTKPTAIILGSEKTGISKKALAMADQD 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E ++ N +E P Sbjct: 137 IIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYNREESALP 179 >gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 170 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 27/175 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + + V++ Sbjct: 5 IVLFEPLMPANTGNIART--TAGTNAVLHLIEPLGFDLDDKHVKRA--GLDYWEHVQLVK 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERW 130 +L + + L + + A + + G+ G +FG+E Sbjct: 61 HDSLPDFLDTL-----------GEQDHLYLVSKFANMDYTQPNYGETEGDHYFLFGKETT 109 Query: 131 GLTNEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL E+ + I P N SLN+S V ++++E + + Sbjct: 110 GLP--EVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLYEALRQQAFPKLDTIH 162 >gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 23/161 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +L Q N+G R ++ P+D ++ A ++ A + + V + Sbjct: 101 VLDGIQDPHNLGACLRVADAVGAH--AVIAPKDRAVGLTQTAVKVASGAAETVPYITV-T 157 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL A+ ++ ++ T A + G E G Sbjct: 158 NLARALREMKERDIWVIGT--------------DALAKDDLYAAQWSTATAWVLGAEGDG 203 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + ++S P+ SLN+S A + ++E Sbjct: 204 LRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRR 244 >gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 159 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L +P++ +N G + R N +L ++ P +K S +D Sbjct: 4 IVLFEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFTWDDKKLKRSG-----LDYHEFVDI 57 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A R K + A + ++ Q ++FG E G Sbjct: 58 QKYTHFDDFLA------------RAKPKRLFALTTKGEANHSQVQYEQGNFLMFGPESRG 105 Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + +S I P+ S+N+S V ++V+E Sbjct: 106 IPTAILETLPMSQKI-RVPMCKDSRSMNLSNTVAVVVYEAWRQ 147 >gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus parainfluenzae ATCC 33392] Length = 246 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 +L + P++ +L N+G R ++ +V P+D + AR + Sbjct: 87 ELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLTSIARKVACG 144 Query: 64 ADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV +NL + DL ++ T A + Sbjct: 145 AAETVPLIRV-TNLARTLRDLQQNHNIWVVGTAG--------------EATETIYQTKLT 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 GSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLAA 246 >gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 158 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFADIKK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + K + A + + ++FG E G+ Sbjct: 60 HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ S+N+S +V + V+E Sbjct: 108 MDILNSMPAEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQ 147 >gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 209 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 19/204 (9%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA---RSSSANAD 65 QN +IL + N+G V R+ + + ++ ++ R G + K + +SA + Sbjct: 14 QNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAGSR 73 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ID V ++ + + + RN + + Q+ ++F Sbjct: 74 KWID-VYLYREVDACMEHV---------RRNYQRVYATHLAHDAKSLYELDLAQSAALMF 123 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G E GL+ ++ ++ P + SLN+S A + ++E V Sbjct: 124 GNEADGLSELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRSAKGLYGVG---N 180 Query: 186 PATKGELLSFLDYL---EISLEER 206 PA+ + + L+ + LEE Sbjct: 181 PASTDQQAALLEDYFRRQEDLEEA 204 >gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22] gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483] gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22] gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22] Length = 175 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N +A+ +L +N + E +I+L+E ++ + Sbjct: 73 GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132] gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans ND132] Length = 153 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 24/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 I+L +P++ N G +AR T L L+ P +K + +V V Sbjct: 2 RIVLFEPEIPPNTGNIARLCAAT-RTPLHLIEPLGFSIDDKHLKRA--GLDYWPAVDLTV 58 Query: 74 FSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +A + + ATT A + + R + I+ G E Sbjct: 59 HPDFDHFLATVAPPRLVMATT---------------KARIAHHRFAFRADDAIVLGPETR 103 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL E+ +A++ P+ SLN+S A ++++E + + Sbjct: 104 GLP-MELMEGHAMVRIPIWGEVRSLNLSTATGILLFEALRQT 144 >gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] Length = 280 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 16/182 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + +I + + E A ++ S+ P + + Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSI--SIDNP---------ILATEPK 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + + Sbjct: 216 LAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275 Query: 181 KE 182 + Sbjct: 276 DD 277 >gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202] gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202] Length = 159 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 27/174 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L +P++ +N G + R N +L ++ P +K S +D Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSG-----LDYHEFVDI 57 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + +A R K + A + + ++FG E G Sbjct: 58 QKYKNFDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRG 105 Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + + +S I P+ S+N+S +V ++V+E ++ + Sbjct: 106 IPKAILDTLPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQFGYANAVPRQP 158 >gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 158 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GLDYLEYA----S 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I HFI + + + +L A +I +N ++FGRE G+ + Sbjct: 58 LERHIDWQHFI----SSMKRFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ P SLN++ +V + E + Sbjct: 114 HESADYTLKIPMQPQSRSLNLAMSVAITTGEALRQ 148 >gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430] gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430] Length = 231 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ WP + R+ +A V+ ++ +A+ Sbjct: 30 PHNVSAVIRTADAVGVHEVH-----AIWPGSRMRTMVSAAAGSNSWVQVKTHRSIADAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T + N + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 84 -------TCLKGHNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + +E ++ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREESTLEYSEQQRLLF 188 >gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU 1054] gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU 1054] Length = 168 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 23/158 (14%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFSNLKEA 80 P++ N G V R N L L+ P G+P + AR A D +RV + Sbjct: 21 PEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHRDWDAF 78 Query: 81 IA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +A D ++A T R F + A + + +FG E GL E Sbjct: 79 VAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW--------FVFGSETRGLPAEL 124 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ P SLN+S V ++V+E + Sbjct: 125 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 162 >gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 250 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + +NL E IA L K L + + F Sbjct: 151 MGAQFSLKFGYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus lugdunensis HKU09-01] gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 248 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 17/166 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A I +RV + Sbjct: 97 VIILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + A +I T A N +++ + + ++ I+ G E G+ Sbjct: 157 LSQTIDDLKAHGFWIVGTEADNATDYRDM--------------AADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I P+ SLN S A LM++E +K Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEVYRKRHSYGDK 248 >gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307] Length = 157 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 +LV P++ N G + R L +L L+ P EKA + V++ + Sbjct: 9 VLVTPEIPYNTGAIGRTCVALEL-ELILIKPYGFSLDEKAVRRA--GQDYWKHVQLCEYD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + D RN + S+ +E + ++FG E GL Sbjct: 66 TWQGFMDD-----------RNPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPA 114 Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173 + + + P+ NPL SLN++ ++++ M + Sbjct: 115 TVLNGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQL 155 >gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp. Y04AAS1] Length = 251 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 12/160 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L +N+G +AR + F L + R + SS+ A + + Sbjct: 96 KGFFVVLDHITDPQNVGSIARTVEVFGGIGLLIPKDRSAPINAVVVKSSSGAIFHLKISK 155 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +AI + + E ++ + I+ G E G+ Sbjct: 156 T-PSISKAIKTFKEMGG-----------WVYALEKGGKDITKVDFAYPMCIVLGSEGEGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + S+ +S P+ SLN+S A + +WE +N Sbjct: 204 SKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKNQ 243 >gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila 2300/99 Alcoy] gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila 2300/99 Alcoy] Length = 149 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + + Sbjct: 4 IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYES 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ +A+ + + V A + ++FG E GL Sbjct: 63 WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144 >gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella pneumophila str. Corby] gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila str. Corby] Length = 155 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + + Sbjct: 10 IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYES 68 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ +A+ + + V A + ++FG E GL Sbjct: 69 WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 114 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 115 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 150 >gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas fluorescens Pf-5] Length = 151 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 +IL P++ N G V R N L L+ P +K + + + Sbjct: 4 VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRA--GLDYHEYATLQRH 60 Query: 75 SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++L + L TT +R P A + +FG E G Sbjct: 61 ADLASCLESLGHPRLFAFTTKGSR--------PFHDASF-------QEGDAFLFGPESRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + + P+ SLN+S V + V+E Sbjct: 106 LPADVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147 >gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602] Length = 232 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 28/229 (12%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ + + + + ++ N+ V R + ++ V P Sbjct: 1 MTPERYARIREMLAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAVWPTTRM--- 57 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 K SSA V+ +++A+A + + + E A+ I Sbjct: 58 KTLVSSAAGSNSWVQVKTHKTIQDAVAKM--------KAKGMQILATNLSEKAVDFRA-I 108 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G+E+ G+T E +AL+++ I P+ + SLN+S A L+++E + Sbjct: 109 DYTRPTCILLGQEKTGITPEALALADSDIIIPMIGMVQSLNVSVASALILYEAQRQR-EN 167 Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKKMLDDL 222 + ++ + + K + + L E GY V K+KK+ Sbjct: 168 AGMYRRDSSLLSEKEQ--------QRLLFEGGYPVLSNVAKRKKLPRPF 208 >gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 289 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71 N G V RA + V+ + K ++A + D Sbjct: 139 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 198 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + AD +Y T R P+E L ++ SG +IFG E G Sbjct: 199 KVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEARG 243 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 L + + I+ P+ SLN++ + +M+ Sbjct: 244 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277 >gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112] gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp. novicida FTE] Length = 250 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEELSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + +NL E IA L K L + + F Sbjct: 151 MGAQFSLKFGYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus N315] gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus MW2] gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122] gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus Mu3] gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M876] gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763] gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9635] gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299] gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115] gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5937] gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A8117] gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C160] gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M899] gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus D139] gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus C427] gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C101] gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A10102] gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus H19] gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 58-424] gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M809] gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M1015] gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50] gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122] gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397] gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M876] gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763] gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9635] gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299] gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115] gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5937] gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C101] gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus C427] gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus aureus subsp. aureus D139] gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M899] gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A10102] gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus C160] gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A8117] gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus subsp. aureus H19] gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus ST398] gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus 04-02981] gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M1015] gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 58-424] gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus M809] gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus ED133] gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp. aureus CGS00] gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11] gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46] gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21193] Length = 156 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 28/165 (16%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59 Query: 73 VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +++ EA +++ + K+ + ++ IFG+E Sbjct: 60 YHDSIEAFFEATNGEYYLL-----TKFGKKTYSD--------FDFSNHDKDFYFIFGKET 106 Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + +E + + P++ SLN+S L+++E + Sbjct: 107 TGLPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150 >gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 306 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + L+ ++KA ++ A +D V F + + Sbjct: 164 QDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDFVA-FDSFDD--- 219 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A+ R N P V ER + ++ G E GL+++ + Sbjct: 220 -----LASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRAC-K 273 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ P++ SLN+ A ++++ Sbjct: 274 PVAIPMSGEMESLNVGIAGGVLMY 297 >gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107] Length = 340 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G V R+ L L R + A +A A + RV + +L E + Sbjct: 78 PHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSL-EKL 136 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 D + + A E + L + G V ++ G E GL+ Sbjct: 137 KDSGYRVIGLAA-------------EGDVTLMDVDLDGPLV-LVTGSEDQGLSLLTRRHC 182 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++ P+ + PSLN S A + V+E + + Sbjct: 183 DQLVRIPLRGITPSLNASVATAMCVYEVARRNWMKDIHGQAPSPP 227 >gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1] gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1] Length = 260 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 14/162 (8%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSV 71 + V++L N+G + R+ F + + R P A + +++ A + Sbjct: 110 RSVVVLLDRVSDPHNVGAILRSAEVFG-ARAVIAPARHSAPETGALAKTASGALERMPYA 168 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRER 129 R+ NL +A+ A + F V +E A ++ N+ ++ G E Sbjct: 169 RI-GNLGDAME---------ALKADGFWMVGLAEEGAAPIDAVAARHTDSNIALVLGAEG 218 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL L + + P F SLN+S A + ++ + Sbjct: 219 PGLRERTRGLCDELAKIPFARDFGSLNVSNAAAVALYALTKG 260 >gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium retbaense DSM 5692] Length = 244 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++ +I L Q NIG +AR +++ L L R A +S+ A Sbjct: 87 ETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGLVLPKNRSAPLGGGALKASSGAL 146 Query: 66 CVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +V + L++A + T L P + + Sbjct: 147 NYLPVAQVTNLGRFLEQATQAALPVIGT----------GLTPD---SLSVYKARLSTPAV 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ ++S P+ F SLN++QA +++ E + Sbjct: 194 LVLGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243 >gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 279 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71 N G V RA + V+ + K ++A + D Sbjct: 129 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 188 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + AD +Y T R P+E L ++ SG +IFG E G Sbjct: 189 KVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEARG 233 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 L + + I+ P+ SLN++ + +M+ Sbjct: 234 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 267 >gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii SP-6] Length = 156 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 27/171 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+LV P++ N G V R N +L L+ P ++ + + V Sbjct: 3 RIVLVHPEIPPNTGNVIRLAANTGC-ELHLIEPLGFSMDDRLLRRA--GLDYHEYAPVRR 59 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L + D +YA T R + V+ P + ++FG E Sbjct: 60 HAGWAAFLADQRPDPATLYAFTTRGSRSLAEVVWP--------------ADAWLVFGCET 105 Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL E+IA + + P+ SLN+S AV + V++ + Sbjct: 106 SGLPEDVREQIAPAQR-VRLPMRAGQRSLNLSNAVAVAVFDAWRQQGYAGA 155 >gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 153 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 21/167 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+ P++ N G R +L LV P G+ E A A D + V V Sbjct: 3 RIVFNAPEIPGNSGNAIRLAAITG-AELHLVKPL-GFNFEDANLRRAGLDYHDLAYVTVH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L A L ++A T+ + I + ++FGRE GL Sbjct: 61 EDLDAAFEALGEGRVFAFTS--------------EGSTVYSDISYETSDILLFGRESVGL 106 Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++EE ++ P+ P S+N++ ++ +E + Sbjct: 107 SSEEKKHPRVTDLVRLPMLPGRRSMNLANTASVVAFEAWRQHGFAGA 153 >gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter segnis ATCC 33393] Length = 245 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 14/158 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R ++ +V P+D + AR + A + +RV + Sbjct: 99 VLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLNSTARKVACGAAENVPLIRV-T 155 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + DL R+N V EA L + +G + ++ G E G+ Sbjct: 156 NLARTLRDLQ--------ERHNVWVVGTAGEATETLYQTKLTGA-LALVMGAEGEGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +IS P+ SLN+S A + ++E + + Sbjct: 207 TREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium lentocellum DSM 5427] Length = 297 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 18/166 (10%) Query: 11 SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + P +L+ + Q N+G + R + + + R + +SA A + Sbjct: 143 AKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVGLTGTVAKASAGA---L 199 Query: 69 DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +V SN+ + I DL + A VL E +G +GI+ G Sbjct: 200 EHTKVAKVSNIAQTIKDLQ---------QKGLWIACA-DMDGKVLFEENLTG-PIGIVVG 248 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + ++S P+ SLN S A LMV+E + Sbjct: 249 SEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQR 294 >gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624] gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624] Length = 249 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E+A+ + + FSG V I+ G E GL Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPIQKCDFSG-PVVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + + P++ SLN+S A + ++E Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622] Length = 167 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ A+ ++LV PQ+ N G VAR +L LV P ++ + Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRA--GLDY 58 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 D +VF + A A + + + + + + R G + ++FG Sbjct: 59 WD--KVF------LRLYPTYAAYAADYPDARRWLFSARAETSLYEARFEEGDH--LVFGS 108 Query: 128 ERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E GL E + + ++ P+ SLN+S +V + +E + Q P Sbjct: 109 EVSGLAPEVMEGGTGTAVTIPMLEDRRSLNLSTSVGIGTYEALRQV---RFTGAGRQAPP 165 Query: 187 AT 188 A+ Sbjct: 166 AS 167 >gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9719] gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JH9] gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JH1] gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9719] gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus CGS03] gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21172] Length = 156 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 28/165 (16%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59 Query: 73 VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +++ EA +++ + K+ + ++ IFG+E Sbjct: 60 YHDSIEAFFEATNGEYYLL-----TKFGKKTYSD--------FDFSNHDKDFYFIFGKET 106 Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + +E + + P++ SLN+S L+++E + Sbjct: 107 TGLPDWVKEKYQ-DTTLRIPMSEHIRSLNLSNTAALLIYEALRQQ 150 >gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L +I T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWIIGTS--------------DEASATLHDTRLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAKG 247 >gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259] Length = 179 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 15/169 (8%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 AP+L V++L + + N+G V R F L+ + L P + ++ Sbjct: 19 EAPKLP-----LVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 A+ +D F + A+ R R + + L++ R+ Q Sbjct: 74 AEDSVDW-EYFEDPLAAVE--------ALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E G+T + S+A + P SLN+S + +++WE + Sbjct: 125 LVLGNEVKGVTQSVVDASDAAVEIPQYGTKHSLNVSVSAGIVLWEFAKQ 173 >gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia J2315] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA L E G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEAPATLYETKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei DSM 14684] Length = 256 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 11/163 (6%) Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + + P+I+ L + Q +N+G +AR T L + R + +SA A + Sbjct: 103 AVEHPLIVALDEIQDPQNLGAIARTAECAGATGLVIPARRSADVTPAVCKASAGAVEHLP 162 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R NL + + D + A + + SG V ++ G E Sbjct: 163 IAR-ARNLADFLGDARGVGAWVYGAEGDGGVPYTGVDY---------SGPGVVLVLGSEG 212 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL A +A+I+ P+ SLN+S A +++E + Sbjct: 213 RGLRPRVAASCDALIALPLRGRIGSLNVSAAASALLYEIVRQR 255 >gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565] Length = 175 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N +A+ +L +N + E +I+L+E + + Sbjct: 73 GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELELDKTRKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC 7002] Length = 388 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 20/190 (10%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + Q + + PV+++ N+G + R + + R + Sbjct: 214 LPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMK 273 Query: 60 SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A A RV NL A+ +L +IY T A ++ Sbjct: 274 VAAGALEHFPVARVV-NLSRAMEELKEAGFWIYGTAAGTSKALHNIKF------------ 320 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +G++ G E GL+ + +++ P+ PSLN S A + ++E +V Sbjct: 321 --EGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQKLVR 378 Query: 176 SEKNVKEQNT 185 + Sbjct: 379 QVQITLPDTP 388 >gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205] Length = 179 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 14/170 (8%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P +++L D + N+G V R+ F + + L P+ + ++ Sbjct: 15 EEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPNVEIHKTALGG 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN----ERIFSGQN 120 + +D F +EA+ L + + F + E + L + Sbjct: 75 EDSVDW-EYFKTTEEAVEKL--------KQKGYFVYSIEQVEGSTKLQNLPEAHPSLSKG 125 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +IFG E G+ + +S+ + P SLN+S ++VWE + Sbjct: 126 YAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAK 175 >gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 177 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 8/160 (5%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +IIL D + NIG R FN+ ++ L P + ++ A ID Sbjct: 25 PLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDW--- 81 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 E D++ + A S+ +E ++ Q ++FG E G+ Sbjct: 82 -----EYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVD 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I SN II P SLN+S +++WE + I Sbjct: 137 QSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWEFAKRYI 176 >gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 +L + +IL Q N+G + R + + P + S K ++ A Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ V + + +LA A + VG +F Sbjct: 165 FHLNIVEHC-TFESV-------------HSRLQVPLLATSSHAKQAVFDVPLNAPVGWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ E ++ ++ P SLN++ A + ++E + Sbjct: 211 GNEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQR 257 >gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii Rt8.B1] Length = 217 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 23/167 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +I + Q N+G + R F ++ + +N + K +S + I Sbjct: 68 KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP--- 124 Query: 73 VFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ATT+ + + V A A L V + G E Sbjct: 125 --------------VIATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNE 170 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G++ + L + + P+ SLN+S A + ++E ++ Sbjct: 171 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 215 >gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 156 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR+ L L++P ++ + +V V Sbjct: 5 IVLHEPLIPANTGNIARSCAATG-AHLHLIHPLGFSTDDRYLKRA--GLDYWHAVNVHHH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + HF+ A + + L + II G+E GL Sbjct: 62 ESFE------HFVEA----QGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPE 111 Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E E I P++ S+N+S ++++E + Sbjct: 112 ELTEKYR-EQTIRIPMSGATRSVNLSNCAAIVLFEGLRQ 149 >gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS 18C-A] Length = 205 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 23/194 (11%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P +++L D + N+G V R+ F + + L P+ + ++ Sbjct: 13 SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYAT-----TARNRNNFKSVLA--PKEAAIVL 111 + + R F +EA+ +LH F+Y+ + + ++ +L P+E Sbjct: 73 GGEDSVAW-RYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPREMEQDC 131 Query: 112 NE----------RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 ++ G E G+ + +S+ + P SLN+S Sbjct: 132 PAADTSHSILPLHPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTA 191 Query: 162 LLMVWECMENSIVS 175 +++WE ++ Sbjct: 192 GIVIWEFARRLLLE 205 >gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 21/163 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V P+D + AR + A + ++V + Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHA-VIV-PKDKSAKLNGTARKVACGAAETVPLIQVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ T E + + +G + I+ G E G+ Sbjct: 158 LARTLREIKDAGVWVVGTAG-------------ETDTHVFDASLTG-PMAIVMGAEGEGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN+S A + ++E + + Sbjct: 204 RRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLRQRAET 246 >gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 216 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 66/168 (39%), Gaps = 13/168 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+ + R + L D ++ + A ++ R+ + +E Sbjct: 40 NLSAILRTCDAVGVQHLY-YTTSDNRDLRIHKTITQGAHRWVERTRI--STEE-----QR 91 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 ++ + V +E A+ E + + I+ G E+ G+++E + L++ +I Sbjct: 92 VFLQKKQKEGYQVVVTHLEERAVPFRE-VDYTKPTIIVMGNEKDGVSSETVELADTVIII 150 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 P+ + SLN+S A L+++E + + + + +K E Sbjct: 151 PMQGMVQSLNVSVAAALILYEAERQLAEAGKYDTPQL----SKEEREK 194 >gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia cenocepacia MC0-3] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA L E G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEAPATLYETKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3] gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans Sphe3] Length = 155 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 23/169 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+ P++ N G R +L LV P G+ A+ A D + V V Sbjct: 3 RILFHAPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60 Query: 75 SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++EA L +YA T+ I ++FGRE GL Sbjct: 61 PGIEEAWQHLQPERVYAFTS--------------DGTASYTDISYQPGDVLMFGRESVGL 106 Query: 133 TNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E+ A + P+ P SLN++ A + V+E + K Sbjct: 107 P-AELKTDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154 >gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 248 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 17/168 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ ++ V + V+ N G + R + L + K +SA + Sbjct: 91 EILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGSIF 150 Query: 67 VIDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + V L A+ + ATT V + Sbjct: 151 GVSVVEAPDTAGLVAALHGAGLTVLATT--------------LDGEVSLDDAELSGPTAW 196 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL E AL++A ++ P+ SLN++ A + +++ Sbjct: 197 LFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSARA 244 >gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 274 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 19/163 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVID 69 + G V+IL Q N+G + R TQ L L W + K + A ++D Sbjct: 124 TLAGDVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSN-KVLRAGMGAHRLLD 182 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGR 127 L E ++ + A TA +LA A + + V + G Sbjct: 183 -------LYEGWSNQQVLSAVTA-------PLLAATADAKCDLFSLKNDLLHPVAWVMGS 228 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G++ + +A + I S P++P SLN+S A + ++E + Sbjct: 229 EGQGVSEDLLAQAKGI-SIPIDPRVESLNVSTAAAICLFETVR 270 >gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6] gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 1_1_14] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 26/175 (14%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 P L K P + L N G +AR + + + P G + A +SA Sbjct: 88 PFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVII--PARGSVSVNADAMKTSA 145 Query: 63 NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A + R NL+ + + + AT E + Sbjct: 146 GALHTLPVCR-EQNLRATLQYLKDSGFRIVAAT---------------EKGDYDYTKADY 189 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 190 TGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 253 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 12/153 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R+ L LVN S K ++ A + V+ Sbjct: 113 VLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLP---VWETT 169 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 E + L + + + A ++ R ++ G E G++ + Sbjct: 170 VEELEGL---------LKTSQIPLYATALREDTVDVRQADLGRAAVVIGSEGRGVSQALL 220 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P+ SLN + A ++++WE + Sbjct: 221 DRAEQTVKIPMRERCESLNAASAAVVVLWEMGK 253 >gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A I +V SN+ Sbjct: 100 ILDEITDPHNMGAIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYIKVAKV-SNI 158 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I DL +I T A E + + ++ G E G++ Sbjct: 159 NSTIRDLKEKGLWIIGT--------------DAKAEKSFEELDYDFPLALVIGSEGKGIS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + +I P+ SLN S A ++++ + Sbjct: 205 RLVLENCDFVIKIPMKGKINSLNASVAASILMYNILS 241 >gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P 36-108] Length = 267 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 16/165 (9%) Query: 7 QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 ++ A+ VII +VD NIG + R+ + + L + + +A S + Sbjct: 114 EVCQDARRIVIINGVVDTT---NIGAIFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGS 170 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++ + ++L + A N + P + S + II Sbjct: 171 VFLVPWTWIDNSLSDLCGLGFRTVAMALT--ENSIPIDNP---------ILSSEPKLAII 219 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E GL E I ++ ++ P++ SLN++ A + W+ Sbjct: 220 MGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264 >gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 30/178 (16%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--- 63 +L + +++L + N+G + R+ + L + + A SS Sbjct: 113 ELHLPKQPLLLVLEGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPNAIRSSQGLIF 172 Query: 64 ADCVIDSVRVFSNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A ++++ R EA+AD + AT + I Sbjct: 173 ALPIVNADR------EALADWLQKGRYQTVAAT---------------PHTDQSHWEIDY 211 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + FG E GL++ + + I P+ SLN++ A + ++E VS Sbjct: 212 TKPTALFFGSESDGLSDYWMNHLDQRICIPMKGRADSLNVAAAAAVCLYEARRQRQVS 269 >gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D] gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D] Length = 260 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 +L + +IL Q N+G + R + + P + S K ++ A Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ V + + +LA A + VG +F Sbjct: 165 FHLNIVEHC-TFESV-------------HSRLQVPLLATSSHAKQAVFDVPLNAPVGWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ E ++ ++ P SLN++ A + ++E + Sbjct: 211 GNEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAVCLFEAVRQR 257 >gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305] gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305] Length = 159 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L +P++ +N G + R N +L ++ P +K S +D Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSG-----LDYHEFVDI 57 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N + +A R K + A + + ++FG E G Sbjct: 58 QKYKNFDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRG 105 Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + +S I P+ S+N+S +V ++V+E Sbjct: 106 IPKAILDTLPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQ 147 >gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99] gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 344 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F L LV+ S A ++ A+ V +AI+ Sbjct: 208 PHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTAEGGAEHV-----------QAISG 255 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F A + + V I L + + V ++ G+ER GL++ + + Sbjct: 256 ESFAAGLDAFRKAGYTIVTTSSHQGIPLAKAELPAKMV-LVLGQERDGLSDSTLEQGDLS 314 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 315 VSISGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 269 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 19/170 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 P+I + V+ N G + R F + KA +SA + + Sbjct: 111 NSPLIAVPVETNEPGNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPVA 170 Query: 72 R------VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R V L EA F TA + + EAA N + Q +F Sbjct: 171 RNTSVVEVVEKLHEA----EFQILATAADGDVNLH-----EAADPANGMLA--QPTAWLF 219 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL + + L++ +S P+ SLN++ A + ++E + I Sbjct: 220 GNEAHGLGDW-LDLADIRVSIPMQGQAESLNLATAASVCLYESSKAQIAK 268 >gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC1989] Length = 251 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 22/180 (12%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKA 57 + P+++ S P I +L N+G R+ + Q +V P+D + Sbjct: 88 LKSRLPKMKESGVIPFILVLDGVTDPHNLGACLRSAEAAGV-QFVIV-PKDNSASLTPTV 145 Query: 58 RSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + A V+ VRV + L+ + ++ A + + Sbjct: 146 VKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGAAG--------------EAEQDHYQ 191 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + I+ G E GL +++I P+ SLN+S A + ++E + Sbjct: 192 MNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGICLFEALRQRSA 251 >gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 7P49H1] Length = 160 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +LA + ++ ++FG E G+ Sbjct: 61 KTFAAFLE------------SEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + I P+ S+N+S +V + V+E N+ E Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158 >gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 248 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 13/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ ++ V + V+ N G + R + L + K +SA + Sbjct: 91 EVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGS-- 148 Query: 67 VIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +F ++ EA + A ++L V + +F Sbjct: 149 ------IFGVSVVEAPDTAGLVAALHGAGLTVLATMLD----GEVSLDDAELSGPTAWLF 198 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL + AL++A ++ P+ SLN++ A + +++ Sbjct: 199 GAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSARA 244 >gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B] Length = 241 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 19/174 (10%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62 ++ ++ + + +L+D NI V R+ + QL V WP R +++ Sbjct: 11 EMLDNRQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQLHAV-----WPESAMRVSGNTAS 65 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + ++R + +AI TA + + V+ I + Sbjct: 66 GSQQWVKTLR-HQTVTDAI---------TALKADGMQVVVTNFSPNAKDFREIDYTKPTA 115 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E+ G+++E + L++A + P+ + SLN+S A L+++E + Sbjct: 116 IVLGHEKNGVSDEAVRLADAEVIIPMVGMVQSLNVSVAGALVLFEAERQRRATG 169 >gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 250 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 17/163 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIA 82 N+ + R+ + ++ V W + + ++ ++ + + S++ +A+ Sbjct: 30 PHNVSAILRSCDAVGINRIHGV-----WDQKTKLRKGTAMGSEHWV-KTEMHSSIDDAVG 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + +N V + ++ E I Q II G+ER G T E IAL++ Sbjct: 84 VL--------KQQNMQVLVTHLSDDSVDFRE-IDYTQPTAIILGQERHGATEEAIALADK 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 I P+ + SLN+S A L+++E V+ + + + Sbjct: 135 NIVIPMVGMVQSLNVSVAAALVLYEAQRQRDVAGMYDTLQLDE 177 >gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 177 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 21/179 (11%) Query: 4 YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + +N K PV++ L + + N+G V R F + ++ L P ++ ++ Sbjct: 13 STEEYKNIEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAI 72 Query: 63 NA-----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIF 116 A ++ NL E + R N + E +I E + Sbjct: 73 GATESVDWEYEENAL---NLIEKL-----------RKDNYSIVCIEQVENSISFPEYEVD 118 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G E G+ E I ++ + P + SLN+S +++W+ E + Sbjct: 119 PSRKYAIVMGNEVDGVQQEIIDKTDVCLEIPQSGTKHSLNVSVCTGIVLWKWYEAFLQK 177 >gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis Bt4] gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia thailandensis E264] Length = 247 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 25/176 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGV 245 >gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 154 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 29/169 (17%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76 + +P++ N G R + L L+ P G+ +A+ A D + SV V + Sbjct: 5 VFHEPRIPPNTGNAIRLVAGTGCA-LHLIEPL-GFDLSEAKLRRAGLDYHDLASVTVHES 62 Query: 77 LK---EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L EA+A +YA TT + P + ++FG E GL Sbjct: 63 LAAAWEALAP-ERVYAFTTQGSTRYTDIAYRPGDV---------------LLFGTEPTGL 106 Query: 133 TNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E + ++ I+ P+ P S+N+S A + V+E Sbjct: 107 PAEVL--ADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQQGFPGA 153 >gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC 49989] Length = 297 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 12/158 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V++L + N+G + R + + + R + S A I Sbjct: 147 KPLVLVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIP-CI 205 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +NL A+ DL + F V A E+ F G +V ++ G E G+ Sbjct: 206 MVTNLAAALKDL---------KQRGFW-VYAADANGDSCFEQEF-GGSVALVLGNEGKGI 254 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + S+ +S P+ F SLN+S A ++++E + Sbjct: 255 SKLCLNESDYKVSIPMVNDFDSLNVSVAAGILMYEIVR 292 >gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus KT] gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus flagellatus KT] Length = 251 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 23/177 (12%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L++ K P LV + N+G R + ++ P+D + R + Sbjct: 91 LESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + V + L+E FI A A Sbjct: 149 AAETVPFIAVTNLARTLRELKDAGVFIVGAAA--------------EADADLPSTNLSGP 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E GL +++IS P+ SLN+S A + ++E I+ Sbjct: 195 LALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQRILQQA 251 >gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM 44702] Length = 164 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 22/164 (13%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P + N G R L L P ++ + + SV + N A Sbjct: 15 QPVIPGNTGNTIRQCAGTGAA-LHLAGPLGFNFDDRHLKRAGLDYHDLASVTLHENRDAA 73 Query: 81 IADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+L H ++A TA A I ++FG E GL + Sbjct: 74 LAELADKGGHRVFAFTA--------------HADTWFTDITYEPGDVLLFGTEPTGLEQQ 119 Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + P+ P S+N++ A + +E + Sbjct: 120 ALDDPRVTQHVRIPMLPGRRSMNLANAAAVATYEAWRQAGFPGA 163 >gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1] Length = 176 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-- 66 + ++IL + + NIG V R F + ++ L P + ++ A Sbjct: 19 SSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTALGATDSV 78 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIF 125 V + L + +L + + + E A++LNE + ++F Sbjct: 79 VWEYCE--DTLA-LVKELQ--------ENDVKVAAIEQAENAMMLNEFQPEKQHTYALVF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E ++ S+ ++ P SLNIS + +++W+ Sbjct: 128 GNEVKGVQQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFR 172 >gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170] gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170] Length = 216 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 24/179 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F L ++ R G +K + A +D V+ + + I+ L Sbjct: 44 HNTSAVIRSCEVFGLQDAHVIENRFGKRLDKNIAM--GAQQWVD-VKRHEDTESCISHL- 99 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R++ P + + +LN+ + + FG E+ GL+ E + ++ + Sbjct: 100 -------RDQGYQIIATTPHDDSCLLND-FNLDKKTALFFGTEKEGLSEEVMQKADGFLK 151 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204 P+ SLNIS + +++ +K+Q P ++ LE L+ Sbjct: 152 IPMVGFTESLNISVSAAIIL--------QYLRTKLKQQELPWQLSDIEK----LEKRLD 198 >gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii] gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii] Length = 198 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 15/167 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F + ++ LV R + + ++ + R F L + + L Sbjct: 12 HNIGTIVRSATAFGVKEVCLVGSR------QFNTFGSHGSDAHVAFRHFDTLAKCVQHLK 65 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R + E A+ + E F+G + G E G+T+ ++AL + + Sbjct: 66 EVEGC----RVLGVEIC---EGALPVQEHPFTG-PTAFLLGNEGQGMTDRQMALCDGFVY 117 Query: 146 FPVNPL-FPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 P + SLN++ A +++ + + + A K + Sbjct: 118 IPQHGAGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQ 164 >gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601] gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. AS9601] Length = 160 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 26/166 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 + L +P++ +N G +AR+ FN+ L L+ P +K + V V + Sbjct: 3 VALFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRA--GLDYWPLVTVNQY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N ++ +A +++ + + K+ + L + F ++ ++FGRE GL + Sbjct: 60 ENFEKFLA-----------SKSTKRIISFSKKNGLYLKDFKFKQDDI-LLFGREDSGLPD 107 Query: 135 EEIALSNAIISF--P----VNPLF---PSLNISQAVLLMVWECMEN 171 I S+ +IS P N SLN+S A + ++E + Sbjct: 108 SIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAYKQ 153 >gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 154 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 19/154 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R T L +V P + A D + + Sbjct: 4 VIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHP 62 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + +A + IYA T +L +I G++FG E GL Sbjct: 63 DLDDCLAHVPGNIYAFTG--------------HTDILLPQIQFQDGDGLMFGPEDTGLPV 108 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + + + P+ SLN+S + + ++ Sbjct: 109 EVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLY 142 >gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 159 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 38/171 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+ +P++ N G +AR L T+L L+ P + + + + Sbjct: 4 IVFYEPEIPFNTGAIARTC---GLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY 60 Query: 75 SNLKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +ATT + + G I+FG Sbjct: 61 KSYDDFLEKNEDEMKDGASLYFATTKAEQKYTDV-------------KFKDGDY--IMFG 105 Query: 127 RERWG-----LTNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171 E G L N+ I I P+ + SLN+S + ++++E + Sbjct: 106 PETRGIPESILFND-IEHC---IKIPMLKDYGRSLNLSNSANIILFEALRQ 152 >gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 330 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 25/176 (14%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 PQ V++L + N G V R + N + K ++A + Sbjct: 166 PQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAGSL 225 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNF----------KSVLAPKEAAIVLNERI 115 + V L E + AR R + P + + L+ Sbjct: 226 FHLPVVTGVG-LPEVVEL--------ARARGLQVLAADAHPPAHDLHVPWDTGLDLS--- 273 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 Q +FG E WGL ++ +++ ++ P+ SLN++ A + ++E N Sbjct: 274 ---QPTAWVFGNEAWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARN 326 >gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA] Length = 229 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +++A Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDSVA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188 >gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 267 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 18/150 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE----AI 81 EN+G + R F + + L ++ S V+ RV E A+ Sbjct: 131 ENLGAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMG--HVL---RVPFTTAERWPCAL 185 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALS 140 +L R + L P+ A+ L +G + + ++FG E GL+ + + Sbjct: 186 DEL--------RRYGFHLAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAA 237 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ + P+ SLN++ A + +E Sbjct: 238 DSWVRIPMASGVDSLNVATAAAVAFYELTR 267 >gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans SPH-1] Length = 165 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G V R N + L L+ P ++ + + R Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRLMRRA--GLDYHEYAPVRRH 60 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + + D ++A T + + ++ P + ++FG E Sbjct: 61 ADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDW---------------LVFGSES 105 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E + P+ P SLN+S AV + V+E Sbjct: 106 KGLPAEVREQFPPQQRLRLPMLPQQRSLNLSNAVAVTVFEAWRQ 149 >gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis z3032] Length = 229 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ +++A V+ N+ +A+ Sbjct: 30 PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASSAAGSNSWVEVKTHRNIGDAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L AR + L+ + A+ E I + I+ G+E+ G+T E + L++ Sbjct: 85 HLK------ARGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITEEALRLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYRRANSTLPEEEQQRLLF 188 >gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00] gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia intracellularis PHE/MN1-00] Length = 153 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 22/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L P++ N G +AR T L L+ P ++ + V +V+ Sbjct: 3 ILLYQPEIPPNTGNIARLCAAT-HTPLHLIEPLGFKLEDRYLKRA--GLDYWKHVILKVW 59 Query: 75 SNLKE-AIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + ++D + T+AR + + ++FGRE G Sbjct: 60 PQLDDYLLSDGLGRRLVITSARGGVAVHQFMF--------------SADDTLVFGRETAG 105 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + + P+ SLN+S A +++++ + Sbjct: 106 LPKDLMDQYEHKVRIPIYSTVRSLNLSTAAGIILYQALS 144 >gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 154 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+ P + N G R N +L L+ P ++ + + +V V Sbjct: 3 RIVYFQPCIPPNTGNAIRIAANTGC-ELHLIEPLGFTMTDAQVRRAGLDYHEMANVTVHP 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L A L ++A TA A + ++FG E GL Sbjct: 62 DLATAWEKLAPTRVFAFTA--------------HATRFYTDVSYEPGDVLLFGPEPTGLP 107 Query: 134 NEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 +E + ++ ++ P+ S+N++ A + ++E Sbjct: 108 DEVL--ADPHVTDQLRIPMLEGRRSMNLANATSVALYEAWRQ 147 >gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter aphrophilus NJ8700] Length = 158 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFADIKK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + K + A + + ++FG E G+ Sbjct: 60 HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ S+N+S +V + ++E Sbjct: 108 MDILNNMPAEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQ 147 >gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745] gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745] Length = 172 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 37/172 (21%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P + N G +AR N T L L+ P ++K + D V + Sbjct: 5 IVLFEPLMPANTGNIARTCAGTN---TVLHLIKPLGFTINDKTVKRA--GLDYWDKVEIV 59 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-----FSGQNVGIIFGR 127 NL E +A + + K + + A + + ++ ++FG+ Sbjct: 60 YHENLPEFLATV-----------PDKKRLFVVSKFAKRAYSQADYTSENNDEDNYLLFGK 108 Query: 128 ERWGLTN------EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172 E GL EE A I P N +LN+S + ++++E + Sbjct: 109 ETTGLPEAFMRQYEECA-----IRIPQNDENIRALNLSNSAAIVIYEVLRQQ 155 >gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 169 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 29/166 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FS 75 I+L +PQ+ N G +AR N + L L+ P +K + V + + Sbjct: 6 IVLFEPQIPANTGNIARTCAATN-SPLHLIEPLGFSTDDKHLKRA--GLDYWHDVDITYH 62 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLT 133 EA D + + + A + + + +FG+E GL Sbjct: 63 KSMEAFLDY-----------LGERPLYLITKFANHTYDEVDLARDEEQFFMFGKETTGLP 111 Query: 134 ------NEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 NEE + P+N SLN+S ++V+E + Sbjct: 112 EEFMRENEE-----KCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQ 152 >gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] Length = 172 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 30/184 (16%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L P++ N G + R+ N T L L+ P S+K + V + Sbjct: 3 IVLYQPEMPYNTGNIGRSCVITN---TTLHLIKPLGFEISDKHIKRT--GLDYWKYVDLK 57 Query: 73 VFSNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + ++ + + +ATT +R + I+FG E Sbjct: 58 IWESFEDFMENKGSGKIYFATTKTDRKYSDVQFEEDDY---------------IMFGPES 102 Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL E + I+ P+ + SLN+S + +++++E + + E N++++ A Sbjct: 103 RGLPEEILNRYKEQNITIPMLKIGRSLNLSNSAVIILYEALRQQ--NFEFNMEDEKVEAI 160 Query: 189 KGEL 192 + +L Sbjct: 161 RKDL 164 >gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 22/157 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V P+ K + ++ + +D V++ ++ A+A+L Sbjct: 30 PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGSAVAEL 86 Query: 85 HF----IYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I AT + + +F+++ + I+ G+E+ G+ E +AL Sbjct: 87 KASGMQIVATHLSESSVDFRTIDYTR--------------PTAILVGQEKHGIGEEALAL 132 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ I P+ + SLN+S A +++E ++ Sbjct: 133 ADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 169 >gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase Length = 250 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 L + P + IL + N+G R+ F + ++ P+D + R + Sbjct: 88 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + + + +I T A L + I Sbjct: 146 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ I+ G E GL + + P+ SLN+S A + ++E + Sbjct: 192 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 249 >gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 281 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P++ + V +L + + N G V R + L + + K+ +S + Sbjct: 114 PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 173 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 + +++A+ L R+ AA + +E G Sbjct: 174 YHLPVAVGVP-VEQAVQGL--------RDAGVRILAADGAGAADLDDELDAGTMGTPTAW 224 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281 >gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium pseudotuberculosis 1002] gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium pseudotuberculosis I19] Length = 176 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 II P + N G R L L P EK + + V + N Sbjct: 26 IIFDQPVIPPNTGNAIRMCAGTG-AHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 84 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ L I+A T + + + ++FG E GL Sbjct: 85 LERCFDSLPHTRIFAFTTHGKTHHSDIR--------------WESGDALLFGTEPTGLAE 130 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + ++ P+ P S+N+S A + +E Sbjct: 131 ETLVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQ 169 >gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 163 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L +P++ N G + R N +L L+ P +K + + +++ Sbjct: 12 IALYEPEIPPNTGNIIRLCANAG-AKLHLIEPLGFKLEDKQLRRA--GLDYHEFADLKIY 68 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N E + I+A T + + + V + ++FG E GL Sbjct: 69 KNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDD--------------ILLFGPETRGL 114 Query: 133 TNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVW 166 + + L + P++ SLN+S +V ++++ Sbjct: 115 PIDVLKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 149 >gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 154 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 28/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ +N G +AR LT L L+ P +EK + ++ Sbjct: 5 IVLYQPEIPQNTGNIARTCV---LTDCKLHLIKPLGFDINEKQVKRA--GLDYWSELNLE 59 Query: 73 VFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + ++ + ATT ++ + SG I+FGRE Sbjct: 60 IHESYEDFLEKYGNERIFLATTHETGTHYDEI------------EFKSGD--FIMFGRET 105 Query: 130 WGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 G+ E++ + + P+ SLN+S V ++ +E + Sbjct: 106 CGVP-EDVHNRHKGLRVPMIKSSTRSLNLSNTVAIVAYEALRQ 147 >gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1] Length = 157 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 21/170 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G V R N L L+ P +K + ++ + + Sbjct: 4 IVLYQPEIPPNTGNVIRLCANTG-YHLHLIEPLGFELEDKKLRRAGLDYHEFTRLKRYPD 62 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ IYA T + + +N ++FG E GL Sbjct: 63 FQAFVNQNEIGTIYALTTK--------------GSHTHSEASFAENDVLVFGPETRGLPA 108 Query: 135 EEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E I + + P+ SLN+S V +MV+E + + K Sbjct: 109 EFIEALPPAQRL-RLPMQANSRSLNLSNTVAVMVYESWRQLGYAMPADSK 157 >gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri] Length = 174 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 22/167 (13%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + K IIL +P++ +N+G + R N +L L+ P E+ + S+ +D Sbjct: 3 TTKKINIILFEPEIAQNVGAIMRTCVAIN-AKLHLIEPFGFIFDERFITRSSA--NYVDF 59 Query: 71 V--RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +++ + +L AT R + + + I+F Sbjct: 60 ADYETYNDWNHFLQLNPNLKLYCAT----RYAQQP---------HSAIDFTKDEKIFILF 106 Query: 126 GRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GRE G+ + P++ SLN++ V ++ +E M Sbjct: 107 GRESTGIPTAILKEHLARTFRIPMSEKVRSLNVANTVGIVGYEIMRQ 153 >gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + R + +SA A ID + N+ Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 AI ++ NF EA + + +G + ++ G E GL+ Sbjct: 150 NRAIKEI---------KEENFWVYGLAGEADGDITQTDLTG-KIALVVGNEGKGLSRLVR 199 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I P+ SLN S A + ++E + Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114] Length = 263 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 23/168 (13%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G ++L Q N G + R+ + Q+ N S K + A ++ Sbjct: 112 PSDGDCVVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWSPKVLRAGMGAHFLLS- 170 Query: 71 VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +F+ ++ E H I+AT RN + Q+ +F Sbjct: 171 --IFNRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQSCAWVF 213 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ ++A + P+ SLN++ A + ++E M I Sbjct: 214 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 261 >gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 266 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 16/152 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q NIG + R + + L+ + + A A + ++ ++ + + Sbjct: 126 QDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTVKLIK--TSFERLLD 183 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++H I V+ A + R+ ++ G ER GL E + Sbjct: 184 WKNIHQI------------PVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLDLREQSSC 231 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN++ A ++++E + Sbjct: 232 DMLVSVPMVGKVDSLNLAVATSVILYEIFDQR 263 >gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM 7454] Length = 237 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + R + +SA A ID + N+ Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 AI ++ NF EA + + +G + ++ G E GL+ Sbjct: 150 NRAIKEI---------KEENFWVYGLAGEADGDITQTDLTG-KIALVVGNEGKGLSRLVR 199 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I P+ SLN S A + ++E + Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881] gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881] Length = 156 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVR 72 I L +P++ N G + R N QL L+ P G+ E+ + A D + R Sbjct: 4 IALFEPEIPPNTGNIIRLAANTG-AQLHLIEPL-GFSLEEKKLRRAGLDYSEFAALQVHR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ +E+IA TT +R + +E F +V ++FG E GL Sbjct: 62 DFAAFQESIAGQRLFAMTTKGSRPH--------------SEACFQDGDV-LLFGPETRGL 106 Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ SLN+S AV + ++E Sbjct: 107 PDPILKSLPPTQRLRLPMVADSRSLNLSNAVAVTLYEAWRQ 147 >gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 174 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P++ N G + R N QL L++P +K + S+ + N Sbjct: 29 IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 87 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ +A+ + + V A + ++FG E GL Sbjct: 88 WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 133 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ SLN+S AV ++++E Sbjct: 134 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 169 >gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937] Length = 230 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 33/208 (15%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N+ + + + ++ N+ V R + Q+ V WP+ Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTN 55 Query: 56 KARSS---SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAA 108 + R+ +A ++ + V +++A+ L I AT N S + +E Sbjct: 56 RMRTLVSTAAGSNSWV-QVETHRTVQDAVGHLKTQGMQILAT-----NLSASAVDFRE-- 107 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + I+ G+E+ G+T + +AL++ I P+ + SLN+S A L+++E Sbjct: 108 ------VDYTRPTCILLGQEKTGITADALALADQDIIIPMVGMVQSLNVSVASALILYEA 161 Query: 169 MENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + + +P + E L Sbjct: 162 QRQRQLAGMY--QRECSPLDEEEQQRLL 187 >gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 154 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 19/154 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 +I +P++ N G R T L +V P + A D + + Sbjct: 4 VIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHP 62 Query: 76 NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + +A + +YA T +L +I G++FG E GL Sbjct: 63 DLDDCLAHVPGKLYAFTG--------------HTDILLPQIQFQDGDGLMFGPEDTGLPV 108 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + + + P+ SLN+S + + ++ Sbjct: 109 EVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLY 142 >gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp. AT1b] gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp. AT1b] Length = 157 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 +++ P++ N G V+R N + L L+ P +K + VR Sbjct: 5 VVMFQPEIPANTGNVSRTCAATN-SVLHLIRPLGFSTDDKMLKRA--GLDYWQFVDVRYH 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+E D F Y T + + S L + + +FGRE G Sbjct: 62 DSLEELWEKHPDGQFFYIT--KYGEQYPSDLDVSDV----------DGDYFFVFGRETKG 109 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E I + I P + L SLN+S ++V+E + Sbjct: 110 LPMEVIENNLDRCIRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151 >gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER] gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 231 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 12/156 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L Q N+G + R + L + R + S+ ++++ Sbjct: 86 VLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGGFV---NMKIIK 142 Query: 76 NLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I AT T + N+ ++ + ++ + ++ G E G++ Sbjct: 143 --------VNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNKPSVLVVGNEGDGVSK 194 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ +I P S+N+S A ++++E + Sbjct: 195 STLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 230 >gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 244 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 12/156 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L Q N+G + R + L + R + S+ ++++ Sbjct: 99 VLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGGFV---NMKIIK 155 Query: 76 NLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I AT T + N+ ++ + ++ + ++ G E G++ Sbjct: 156 --------VNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNKPSVLVVGNEGDGVSK 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ +I P S+N+S A ++++E + Sbjct: 208 STLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 243 >gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114] gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114] Length = 229 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 18/163 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIAD 83 N+ + R + ++ V WP+E+ + SA A +D V N+++A A Sbjct: 32 NVSAIVRTADATGIHKIHAV-----WPTEQMQMLGHTSAGARNWVD-VETHKNIEDAFA- 84 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T + + + A+ E I + II G E+ G++ + +A+++ Sbjct: 85 -------TLKEQGMQILATNLSDTAVDFRE-IDYTKPTAIILGSEKTGISKKALAMADQD 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E ++ + +E P Sbjct: 137 IIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYDREESMLP 179 >gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli BSR3] Length = 249 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 25/180 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T +A L E G Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTA-------------DDAGASLYETKLDG 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 V ++ G E G+ + +++ P+ SLN+S A + ++E + + K Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQRRAALAK 249 >gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 150 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 19/165 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 ++L PQ+ +N G V R L L+ P +++ + + +V+V Sbjct: 2 AVVLFQPQIPQNTGNVVRTCAVTG-QNLILIGPLGFSITDRWLKRA--GLDYWEGVNVQV 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL+E + R NF A + +IFG E GL Sbjct: 59 LDNLEELLD----------RTSENF---YFFSSHATQNYTDVSYQPKDLLIFGAETHGLP 105 Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N + P+ LN++ +V + V+E E Sbjct: 106 ESITNKWPNRCVKIPMVSGVRCLNLATSVGIGVYEAWRQQGFKKE 150 >gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans WP3] gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] Length = 217 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 18/162 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R + ++ V WP + R +++ + + S + + + +A+A+ Sbjct: 21 NIAAVIRTADAVGIHEIHAV-----WPEIEMRVSGNTASGSQQWVKS-KAHNKMSDAVAE 74 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R ++ E A+ E I + II G ER G++ E IA ++ Sbjct: 75 F--------RRQDMQILATNFSETAVDFRE-IDYTRPTAIILGNERDGVSPEGIASADQH 125 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + P+ + SLN+S A L+++E + ++ + Sbjct: 126 VIIPMIGMVQSLNVSVAGALIMYEAQRQREAAGMYGTRKLDE 167 >gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus thermophilum H-6-12] Length = 241 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 11/159 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +++L Q N+G +AR + + + R + + +SA A I VR Sbjct: 91 KSVIVVLDHIQDPHNLGAIARTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPVVR 150 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V SN+ + +L + ++ L ++ + ++ G E GL Sbjct: 151 V-SNIANFLREL----------KKKGWFIVGADLDTENLYNQVNYRFPLALVVGSEDEGL 199 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ P SLN+S A+ +++++ E+ Sbjct: 200 HRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIRES 238 >gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7] gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7] Length = 264 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 15/173 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P AP L + L Q N+G + R + L S K S Sbjct: 106 MAP-APVLPARITHNCLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRS 164 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + A V+ A+ A ++ + + A Sbjct: 165 AQGAHFVMTIHEHVD--LAALRGC-LAVPLIATALDDAQPLYDASLPA-----------Q 210 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +FG E G+ +A ++ + P SLN++ A + ++E ++ Sbjct: 211 CAWVFGNEGQGVDPVLLAQADMRVFIPQAADVESLNVAVAAGVCLFEQRRLAM 263 >gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 171 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL +P++ N G + R N T L LV P ++ + + +V + Sbjct: 8 VILYEPEIPPNTGNIIRLCANTGAT-LHLVEPLGFAWDDRRLRRA--GLDYHEFAQVHRH 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A + R V A + ++FG E GL Sbjct: 65 ADWA----------SCRAFLGDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHL 114 Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ P+ SLN+S A + V+E Sbjct: 115 LNSLPARQVLRLPMRSGQRSLNLSNACAVAVFEAWRQ 151 >gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2] gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis Aspo-2] Length = 150 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 I+L P++ N G +AR T L L+ P +K + V V Sbjct: 2 RIVLYQPEIPPNTGNIARLCAAT-RTPLHLIEPLGFTIDDKHLRRA--GLDYWPHVDVTV 58 Query: 74 FSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + + + + A+T + + P + I+ G E Sbjct: 59 HPDFDDFLTRVSPARLVLASTRATAPHHRFAFRPDD---------------AIVMGPETR 103 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + +A + P+ SLN+S A ++++E + + + + Sbjct: 104 GLPADMLARYPDGVRIPIWGEVRSLNLSTATGVLLFEALRQTGLIPD 150 >gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 279 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 PQ +A V +LV N+G V R + L + KA +S + Sbjct: 105 PQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAGDTVDPHNGKAVRASTGSV 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----NERIFSGQNV 121 + R D + A R +LA + G V Sbjct: 165 FHLPLARD--------RDAGAVLAAC---RAAGLVLLAADAHGELDLHDPAADAVLGGRV 213 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E G+ +E +A ++ +S P++ SLN++ A + ++ Sbjct: 214 AWVFGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258 >gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 153 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 21/167 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ P++ N G R N +L LV P +K + + V V + Sbjct: 3 RVLFYRPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVHVHA 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L A L +YA +A A L + ++FG E GL Sbjct: 62 DLAAAWQVLLPAKVYAFSAT--------------ATRLYTDVSYAPGDVLMFGPESAGLP 107 Query: 134 NEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E+ + + + P+ P SLN++ + V+E + ++ Sbjct: 108 -DEVQRAAEVTDRLRLPMLPNNRSLNLANTAAIAVYEGWRQNGFTTP 153 >gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 150 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L++P++ N G + R +L LV P + + V+ + Sbjct: 4 IVLINPEIPNNTGNIGRLALGSGC-RLHLVKPFGFKIDDTRLKRA--GLDYWQHLDVQYY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N ++ F + P E +++ ++FG+E GL Sbjct: 61 DNTEDFFKKNAFAKMAFLSSHGTKSHYDIPFE------------EDLFLVFGKESKGLPK 108 Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E + + P+ + SLN++ AV ++ +E + Sbjct: 109 EITEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQ 147 >gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4] gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4] Length = 169 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 28/166 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I L +PQ+ N G +AR N T L L+ P +K + + V + Sbjct: 5 IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRA--GLDYWNEVHITYH 61 Query: 75 SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL + LH I V + + A + +FG+E Sbjct: 62 KNLAAFMEVAQNGQLHLIT-------KFGHRVYSDVDYATTEGDHY-------FLFGKET 107 Query: 130 WGLTNEEIALSNA--IISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL EE + + P+N SLN+S ++++E + Sbjct: 108 TGLP-EEFMREHEEDCLRIPMNDEHVRSLNLSNTAAILIYEALRQQ 152 >gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 150 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G + R ++L LV+P ++K S V V +++ Sbjct: 4 IVLVEPEIPNNTGNIGRLCVGTE-SRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEYAD 62 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E I D ++ ++ ++ + + L +FG+E GL+ Sbjct: 63 IEEWIETVPDRSRVFLMSSHAEKSY--LETDFQDGDWL------------VFGKESAGLS 108 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + ++ P++ L S NI+ +V ++ E Sbjct: 109 KDVLDRFDNHLTIPMSKLIRSFNIANSVAFVIGEAKRQ 146 >gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM] gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 176 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S V++L + + N+G + R F + ++ L P + ++ A + Sbjct: 20 KTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGATESV 79 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D V ++ EAI +L N V ++ + + I Q ++ G E Sbjct: 80 DWV-YQKDISEAIKELKT-------QGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNE 131 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL++E + L + I P SLN+S +++W + Sbjct: 132 VEGLSDEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIWSFFKA 174 >gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 226 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 24/166 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++IL + N+G +AR+ F + + + + ++ +SA A ID+V V Sbjct: 79 ILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDVVYKTSAGA---IDNVSVVI 135 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +++++ + ++I+ FKS L + ++ G E Sbjct: 136 ETNLSNSIEKLKENGYWIFGADMEGEEYFKSDL---------------KGKIVLVVGNEG 180 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GL+ + IIS P+ SLN S A +++ E ++ + Sbjct: 181 KGLSPAVRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQNEAD 226 >gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa] gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa] Length = 216 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 43/231 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ F + +L LV R + S + S+++ R F + Sbjct: 7 VVVHNIAKRHNVGTLARSATAFGVKELILVG-RRDFNSFGSHGSTSHLPF-----RHFHS 60 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L +A D + ++A +NE F ++ + G E G Sbjct: 61 LSDARNFLKEKDCDICG-------------VEITDSAFPVNEHPFK-RSTAFLLGNEGTG 106 Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 L+ +E + + + P + SLN++ A +++ + S + A Sbjct: 107 LSTKECEICDFFVYIP---QYGCGTASLNVTVAASIVLHHFGVWAGFSERSRDGHKFIVA 163 Query: 188 TKGELLSFL--DYLEISLEER---------GYFRPVEKKKKMLDDLYSIFI 227 + + E ++ER G+F + L ++F Sbjct: 164 ERPVKQGKYCTETEESIIQERKSRRENASNGFFDETRNAESTSSPLDTLFT 214 >gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 242 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 18/176 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P+L A+ ++IL + N+G +AR + + + R + A + Sbjct: 82 LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKA 141 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A + VRV + L + + +I+ T + + + + Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGT---------------DMDGTVYNKWNT 186 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +I G E G+ + +I+ P+ SLN S A ++++E N + Sbjct: 187 KGKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNRL 242 >gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823] gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis DSM 16823] Length = 274 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 29/178 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA-- 64 L + +++L N G +AR + LV + S A +SA A Sbjct: 117 LSEGKEPCILVLDRITDVRNFGGIARTAACMGV-DAILVPSKGSALVSADAIKTSAGALH 175 Query: 65 ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ + + L++ + + T E + V E Sbjct: 176 SIPVCKTDLLKNSLFY--LQQ--SGFQLVSCT---------------EKSKVSAENYSFF 216 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 II G E G++++ + +S+ +S P+ SLN+ A ++++E ++ + Sbjct: 217 GPTAIIVGSEEDGISHDLLKMSDVRLSIPMAGDISSLNVGVATGMILYERLKQVKAAK 274 >gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7822] Length = 313 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R L + R + +A A + RV NL A+ +L Sbjct: 157 PHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLPVARVV-NLSRALEEL 215 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 F + + L+ FSG VG++ G E GL+ +A+I Sbjct: 216 ---------KEAGFWIYGTMSQGSKALHTIDFSGA-VGLVVGSEGEGLSLLTQRCCDALI 265 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S P+ PSLN S A + ++E Sbjct: 266 SIPLAGKTPSLNASVAAAIALYEVYRQRQSEK 297 >gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 179 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + +AK P+++++D N IG V R F + + L P + ++ A Sbjct: 17 EFKTAAKTPIVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPPHKDIAKTALGAT 76 Query: 66 CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 ++ + L +A+ F A+ + E A++LN+ + + + Sbjct: 77 ESVNWKYFENTLDAVDALKKEGFTIAS-----------VEQAEKAVMLNDFEVNAETSYA 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 IIFG E G+ + + S+ ++ P S NIS +V +++W+ Sbjct: 126 IIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLWDLYS 173 >gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 271 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P + L N+G + R + + L++ +S A + VR Sbjct: 116 PWVALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALFDLHLVRTS 175 Query: 74 FSNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F ++ I + T+ + ++ P + ++ G ER G Sbjct: 176 FEQFRDWIKRQTGVALIGTSGAAKQDYHDFPYP--------------SRLVLLMGSERLG 221 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + L + ++ P+ SLN++ A ++++E Sbjct: 222 LQPYHLELCDEVVRIPMVGRSDSLNLAVATAVVLYEIFNQQ 262 >gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271] Length = 281 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R F + + + R + +S A + VRV +N+ Sbjct: 137 ILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTGIVAKTSTGAIEHVPVVRV-ANI 195 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + I L +++AT + A + S + I+ G E G++ Sbjct: 196 AQTIELLQNQGIWVFAT---------------DMAGEDVRQWNSQGPLAIVIGNEGQGVS 240 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ I++ P+ SLN S A ++V+E + + Sbjct: 241 PLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHRM 280 >gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 156 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 16/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G +AR + T L L+ P +K + V + Sbjct: 5 IVLYQPEIPANTGNIARTCAGTD-THLHLIKPLGFSTDDKMLKRA--GLDYWKFVNI--T 59 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E+I F T+ K L K + + ++ IFGRE GL Sbjct: 60 YHESIE--SFFETTSG------KYFLLTKFGKKTYSDFDFSDRDDDLYFIFGRETTGLPQ 111 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+N SLN+S L+++E + Sbjct: 112 WVKEKYADTALRIPMNSNIRSLNLSNTAALLIYEALRQQ 150 >gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002] Length = 264 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 G ++L D Q N+G + R+ + ++ L S K + A V+ Sbjct: 110 PPRRSGSCLLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVL 169 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ ++L E + R + E + L + G +V +FG E Sbjct: 170 -NLHEAADLAEVLGGFA--------GRKLVTHL----EGSQSLYAQDLRG-DVAFVFGNE 215 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G++ + L++ + P+ SLN++ A + ++E + S+ Sbjct: 216 GAGVSAGLLQLADCRVRIPMPGHAESLNVAMAATICLFERVRQLDASAA 264 >gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 251 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 15/153 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +I V+P+ N+G + R + L+ + K+ +SA + I VR Sbjct: 103 VIAVEPREPGNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDV 162 Query: 77 LK--EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+AD + ATT + S+ + + +FG E GL Sbjct: 163 AGGLAAVADAGIVTLATTM---DGELSLDDADDVLA---------RPHAWLFGNEAHGLP 210 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + ++ + P+ SLN++ A + ++ Sbjct: 211 QQVLDGADRSVRIPLRGRAESLNLAAASAVCLY 243 >gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus JW 200] Length = 254 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 23/167 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +I + Q N+G + R F ++ + +N + K +S + I Sbjct: 105 KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP--- 161 Query: 73 VFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ATT+ + + V A A L + + G E Sbjct: 162 --------------VIATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKIAFVLGNE 207 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G++ + L + + P+ SLN+S A + ++E ++ Sbjct: 208 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 252 >gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] Length = 257 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 21/155 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 IIL D Q N+G + R + + + L + +EK SS + ++ + Sbjct: 109 IILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI 168 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + LK+ + + T+ ++ + + + +FG E G Sbjct: 169 EIVDYLKK--QQYNIVV--TSLQEDSIPYM------------EMSLDERNAFVFGNEGHG 212 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E + +++ + P++ SLN++ A+ ++++ Sbjct: 213 VSKEFLEIADEKVIIPISGQAESLNVAMALGILLF 247 >gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter litoralis KT71] Length = 257 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 21/179 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSAN 63 + + + V++L N+G R+ +T +V P+D A R + Sbjct: 93 QAVSGNPRALVLVLDGVTDPHNLGACLRSADAAGVT--AVVVPKDNAADITAVVRKVACG 150 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + VRV + +L A +IY T A Sbjct: 151 ATETVPLVRVTNLARSLDMLKAAGVWIYGTAG--------------EASESLYSSDLAGP 196 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + ++ G E G+ + +++ P+ SLN+S A + ++E +++ + Sbjct: 197 LALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCLFEIRRQRLLAEDAG 255 >gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA 2'-O-methyltransferase) [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + R + +SA A ID + N+ Sbjct: 91 ILDQIEDPHNLGAIIRSAEAFGFDGIIISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 AI ++ + NF EA + + +G + ++ G E GL+ Sbjct: 150 NRAIKEI---------KKENFWVYGLAGEAEGDITQTDLTG-KIALVVGNEGKGLSRLVR 199 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I P+ SLN S A + ++E + Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233 >gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 270 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 18/161 (11%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 AK V+I +VD NIG + R+ + + L + +A S + ++ Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175 Query: 70 SVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +L + DL F A ++ S+ P + + + II G E Sbjct: 176 WTWIDGSLSR-LGDLGFRTVAMALT--DDSISIDDPV---------LKTEPKLAIIMGTE 223 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL E I+ ++ ++ P++ SLN++ A + WE Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264 >gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC 43184] Length = 176 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +TP A ++S K P V++L + N+G V R F + + L P + Sbjct: 12 LTPEA--FKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 69 Query: 60 SSANADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ A+ +D F + EA+ L Y A + ++L N + Sbjct: 70 TALGAEETVDW-EYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLD--------NLLLDKN 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I G E G+ + + I P SLN+S +++W+ + Sbjct: 121 KKYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQ 173 >gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 158 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 ++L +P++ +N G + R +L L+ P AR + +RV Sbjct: 4 VVLFEPRIPQNTGNIGRLCVLTGC-RLHLIEPLGFSLD--ARHLRRAGLDYWEHLPLRVH 60 Query: 75 SNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L E + ++F T + + G + +IFGRE G+T Sbjct: 61 GTLAEFLEYVNFQKGTLCGITTKARRPY----------TQIPVDGGPLFVIFGREDTGMT 110 Query: 134 NEEIALS-NAIISFPVNP--LFPSLNISQAVLLMVWECMENSIVSS 176 P+ S+N+S +V ++V++ + S Sbjct: 111 EALHGACGEKRYRLPMRECSSCRSMNLSSSVAVVVYDILRRQGFSE 156 >gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1] Length = 246 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57 P L K P ++ V N G +AR + + + P G + A Sbjct: 87 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 +SA A + R NL+ + + + AT E Sbjct: 140 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 183 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + II G E G++ E +AL + + P+ SLN+S A ++V+E ++ Sbjct: 184 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQR 243 >gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827] gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827] Length = 167 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 31/172 (18%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVID 69 P I+L +P++ N G + R N + L L++P G+ + R A D + Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPL-GFTWDDKRLRRAGLDYSEFADIKH 59 Query: 70 SVRVFSNLK-EAI-------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 ++ L E + A ++A T K + Q+ Sbjct: 60 HHDYYAFLDSEGLSPDNNQSASCARVFALT----TKGKPSHSNVSYR----------QDD 105 Query: 122 GIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL + I P+ S+N+S +V ++V+E Sbjct: 106 YLMFGPETRGLPPYVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157 >gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 242 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 18/176 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P+L A+ ++IL + N+G +AR + + + R + A + Sbjct: 82 LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPIAVKA 141 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A + VRV + L + + +I+ T + + + + Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGT---------------DMDGTVYSKWNT 186 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +I G E G+ + + +I+ P+ SLN S A ++++E N + Sbjct: 187 KGKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNRL 242 >gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3] Length = 186 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R F + +L LV P ++ A+ + R + EA+ Sbjct: 38 HNVGSIFRTADAFRIEELLLVGITGCPPHPLLHKTAIGAEEAVPW-RHLDSAIEALEQY- 95 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R L +I L ++ + +I G E G+++E I ++ + Sbjct: 96 -------RQEGRTILALEQTHQSITLGSQPALDDRGAVLIVGNEVHGVSDEVIQYADYCL 148 Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168 P SLN+S A + +++ Sbjct: 149 EIPQYGTKHSLNVSVATGIAIYDL 172 >gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR] gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR] Length = 248 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 27/172 (15%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 Q+ G +IL N+G R +T +V P+D + R ++ A Sbjct: 93 QSQQAGLFLILDGVTDPHNLGACLRTADAAGVTG-VIV-PKDKSAQITPTVRKVASGAA- 149 Query: 67 VIDSV--RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++V V +NL A+ DL + Y T +SV Sbjct: 150 --ENVPLVVVTNLARALRDLQELGVWAYGTAG---EATQSVYDVDYRGP----------- 193 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G+ + ++S P++ SLN+S A + ++E + Sbjct: 194 VALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEVVRQR 245 >gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212] Length = 270 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 L + P + IL + N+G R+ F + ++ P+D + R + Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + + + +I T A L + I Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ I+ G E GL + + P+ SLN+S A + ++E + Sbjct: 212 DIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269 >gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 259 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 25/169 (14%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI- 68 G ++L Q NIG + R+ + Q+ S K ++ A ++ Sbjct: 108 PPQNGDCVVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLR 167 Query: 69 -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +E + F A TA + ++ L P Sbjct: 168 LHPASNLAVWRQTYREPL----FATALTANSTPLYRLNLRP---------------PCAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GLT + + P++ SLN++ A + ++E + Sbjct: 209 LFGNEGGGLTAAARNTATRTVKIPMSGATESLNVAMAATVCLFEQLRQR 257 >gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 163 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 19/174 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++ P + N G R M +L L P SE + + V V Sbjct: 5 GVRVLFDRPCIPPNTGNAIR-MAAGAGCELHLAGPLGFDLSEPHLRRAGLDYHDLAHVEV 63 Query: 74 FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+ A + L ++A +AR A + ++ ++FG E G Sbjct: 64 HEDLESAYSRLLPARVWAFSAR--------------ADLALPQVRFAPGDVLLFGPEPTG 109 Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 L + +A A + P+ P S+N+S A + V+E + Sbjct: 110 LAEDVLADPRVTARVRIPMLPGRRSMNLSNAAAVAVYEAWRQQDYQGGMDFPAD 163 >gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria IOP40-10] gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MEX-5] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 25/174 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWVIGTS--------------DDASATLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont] Length = 239 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 18/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS + R+ ++ V+ ++ +A+ Sbjct: 16 PHNVSAVIRTADAVGIHEVHAV-----WPSVRMRTMVSASAGSNSWVKVKTHRHIADAVR 70 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L ++R + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 71 HL--------KDRGMQVLATHLSDKAVDFRE-IDYTKPTCILMGKEKTGITAEALALADR 121 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E S + Q++ + E L Sbjct: 122 DIIIPIVGMVQSLNVSVASALILYEAQRQRQNSGMY--RRQHSLLDEDEQQRLL 173 >gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 158 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 21/169 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L L+ P W +K R S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + K + A + + ++FG E G+ Sbjct: 60 HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIP 107 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + I P+ S+N+S +V + V+E N+ Sbjct: 108 MSILNTMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAVNI 156 >gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus luteus SK58] gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus luteus SK58] Length = 186 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 41/195 (21%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 G I+L+ P++ N G R +L LV P G+ E A A Sbjct: 16 ADRAPAPGTPGFRILLLTPEIPGNTGNAIRLAALTG-AELHLVEPL-GFGFEDAHLRRAG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLH-------------FIYATTARNRNNFKSVLAPKEAAIV 110 D + +L A+ +H + A TAR V Sbjct: 74 LD--------YHDL--AVVTVHPDLDAALAALAPARVLAFTAR--------------GSV 109 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++R+ ++FGRE GL E +A + P+ P SLN++ AV + V+E Sbjct: 110 RHDRVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEA 169 Query: 169 MENSIVSSEKNVKEQ 183 + + Sbjct: 170 WRQHDFAGSAAHPDS 184 >gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD CC 2a] gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides xylanisolvens SD CC 1b] gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A] gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57 P L K P ++ V N G +AR + + + P G + A Sbjct: 88 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 140 Query: 58 RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 +SA A + R NL+ + + + AT E Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + II G E G++ E +AL + + P+ SLN+S A ++V+E ++ Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQR 244 >gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU 1054] gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424] gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia HI2424] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA+ L E G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYETKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae ATCC 23330] Length = 248 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 25/182 (13%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + + ++ + P +LV N+G R + ++ P+D + Sbjct: 84 HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + A + + V + L+E + + ++ T + P Sbjct: 142 VACGAAETVPYITVTNLARTLRE-LKECGIWVVGTDMGGDADLFHYDIP----------- 189 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 Q+V + G E G+ +A++S P+ S+NIS + +++ E + Sbjct: 190 ---QSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRTMQ 246 Query: 176 SE 177 S Sbjct: 247 SA 248 >gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A + +V SN+ Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I DL +I T A E + V + G E G++ Sbjct: 159 NNTIRDLKERGLWIVGT--------------DVNAEKSFEELNYDFPVAFVIGNEGKGVS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ P+ SLN S A +++++ Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X514] gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X561] gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp. X513] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A + +V SN+ Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I DL +I T A E + V + G E G++ Sbjct: 159 NNTIRDLKERGLWIVGT--------------DVNAEKSFEELNYDFPVAFVIGNEGKGVS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ P+ SLN S A +++++ Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 156 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 14/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P + +N G + R +L L+ P + + + V + Sbjct: 8 VVLYQPDIPQNTGNIGRTCVAVG-ARLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVVDS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + L ++F V P I E ++FG E GL Sbjct: 67 LNDVREQL---------PGHDFWYVENPAPRRIWEAEF---KPGSVLVFGSESRGLPPAV 114 Query: 137 IALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I +I P+ P SLN++ V V+E + Sbjct: 115 IEECRGQMIDLPMRPEVRSLNLASTVNTAVYEAIRQ 150 >gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC 25845] Length = 198 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 6 PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P+I++ V N+G V R+ F + + L P+ + ++ Sbjct: 22 EEFKEADKLPLIVVLDDVRSLH--NVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 79 Query: 63 NADCVIDSVRVFSNLKEAIADLHF--IYATTARNRNNFKSVLA-----PKEAAIVLNERI 115 + +D R F ++AI +LH ++ + + P Sbjct: 80 GGEDSVDW-RYFERTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHPTPNTQ 138 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G E G+ + +S+ + P SLN+S +++WE ++ Sbjct: 139 HPSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQLLIK 198 >gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b] Length = 248 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 21/168 (12%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 MTP +++ V++L Q N+G + R + L + K + Sbjct: 95 MTPVERKMKK-----VLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRA 149 Query: 61 SANADCVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + ++ SV + L E D +Y T ++ E++ Sbjct: 150 TQGSLFHVNVTSVDLLEKLPELKEDGFHVYGTALSKATSY--------------EQVAFE 195 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + V ++ G E G+ + +AL + + PV SLN + A ++++ Sbjct: 196 EKVALVIGNEAQGVHADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243 >gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas mediterranea MMB-1] gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas mediterranea MMB-1] Length = 157 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G V R N QL L+ P +K + V+ ++N Sbjct: 4 IVLYQPEIPPNTGNVIRLCANTG-YQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKYAN 62 Query: 77 LKEAIA---DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 IA ++ +YA TT +R + +N ++FG E GL Sbjct: 63 WDAFIAQNENIGTLYALTTKGSRTHS---------------EAEFKENDVLVFGPETRGL 107 Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P+ SLN+S V +MV+E Sbjct: 108 PAEFIEALPKPQRLRLPMQADSRSLNLSNTVAVMVYESWRQ 148 >gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 275 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 17/153 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R + + L +PR P +A S A I R+ + L Sbjct: 134 GNVGAIFRCAAALGVDAIIL-SPRCADPLYRRAVKVSMGAVFAIPYARM----DDWYHGL 188 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R L P ++A+ L+E G+ V ++ G E GL+ + L++ + Sbjct: 189 GEV-----RAAGFRLLALTPDQSAVPLHE-AELGERVALLLGSEGDGLSARWLDLADERV 242 Query: 145 SFPVNPLFP-----SLNISQAVLLMVWECMENS 172 P++P SLN+ A + M Sbjct: 243 CIPMSPAAMARGVDSLNVVAAAAIACHGLMRGR 275 >gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 245 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 24/177 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L NS P ++IL N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASGA 145 Query: 65 DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 I + R L+EA +I T A + Sbjct: 146 AEHIPLIRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLYQSKMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLK 245 >gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383] gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383] Length = 247 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 25/174 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L +I T+ EA+ L E G Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWIIGTS-------------DEASATLYETKLDG 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107] gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107] Length = 240 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 23/159 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVR 72 I L + Q N+G + R + F + L++P P + K SS A ++ Sbjct: 101 AIYLHEIQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPYNPKVVRSSMGAIFHVPLELDV 159 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L E R + L + + F+G +FG E G+ Sbjct: 160 SLAHLAE---------------RFARIACLD--MDGVAVRNDAFAGHR-CYVFGNEARGV 201 Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECME 170 E++ + + + P + SLN++ AV + V+E M Sbjct: 202 PREQLQNFDLHMFNIPGSGAIESLNLATAVNICVYELMR 240 >gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ S++ +AI Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHSHIADAI- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 84 -------THLKSQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGISQEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVLPEEQQQRLLF 188 >gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum C str. Eklund] Length = 263 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 11/159 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + + R+ + +SA A + +V + Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKV-A 174 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI ++ A + + F G V ++ G E G++ Sbjct: 175 NINRAIDEI---------KERGTWVYGADMDGENYCFQTNFKGA-VALVIGSEGRGISKL 224 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ P+ SLN S A +M++E ++ + Sbjct: 225 TKQKCDVLVKIPMIGKITSLNASVAAGIMMYEVLKQKME 263 >gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus] Length = 308 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P++ + V +L + + N G V R + L + + K+ +S + Sbjct: 141 PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 200 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 + +++A+ L R+ AA + +E G Sbjct: 201 YHLPVAVGVP-VEQAVQGL--------RDAGVRILAADGAGAADLDDELDAGTMGTPTAW 251 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 252 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 308 >gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata D2] Length = 248 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V P+D + AR + A + V V + Sbjct: 100 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDNSAKLNGVARKVACGAAETVPLVHVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ T V K + ++ G E G+ Sbjct: 158 LARTLREIKDAGVWVIGTAG---ETDTHVFDAKLTGP-----------IALVMGAEGTGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E + Sbjct: 204 RRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILRQR 243 >gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus epidermidis FRI909] Length = 249 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 19/168 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156 Query: 76 ---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + D F I T A N +++ + + ++GI+ G E G Sbjct: 157 LSKTIDE-LKDSGFWIAGTEASNATDYRDL--------------QADMSLGIVIGSEGQG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ + I P+ SLN S A LM++E EK+ Sbjct: 202 MSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249 >gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 155 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R +L LV P +K + + +++ + Sbjct: 5 IVFDNPVIPTNTGNAIRTAAVTG-AKLHLVEPLGFNFDDKHLKRAGLDYHDLADLKIHPD 63 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ TT A + ++FG E GL Sbjct: 64 FDACMDALPGARVFAFTT---------------NATDWFTDVEYTDGDVLLFGTEPTGLP 108 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E +A + P+ P S+N+S A V+E Sbjct: 109 AEHLAHPRITQEVRIPMVPARRSMNLSNAASTAVYEAWRQ 148 >gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium populi BJ001] Length = 269 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 17/151 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F +T +V P+ A+S+S + V + + NL EA+ Sbjct: 129 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 184 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + L A + + + ++ G E GL + Sbjct: 185 --------ITLGERGFTRIGLDSD--AGTSLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 234 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ SLN+S A + ++ +S Sbjct: 235 LLVRIDATGAIRSLNVSNAAAITLYALTRSS 265 >gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens] Length = 206 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 26/167 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----V 71 ++LV PQ+ N G +AR + L LV P S+ ++ V Sbjct: 27 VVLVSPQIPGNSGSIARTCAATGVG-LHLVEPLGYKIDGSKLKSTG-----LEYWPYVVV 80 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V + + + T + +N K +LA + ++ + ++FG E G Sbjct: 81 KVHKSWND--------FFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEVDG 132 Query: 132 LTNEEIAL------SNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 L + + I P++ + SLN+S + + V+E + Sbjct: 133 LPAAALEQSTTGQYAGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQ 179 >gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586] Length = 230 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 90/206 (43%), Gaps = 29/206 (14%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP ++ N+ + + + ++ N+ V R + Q+ V WP+ Sbjct: 1 MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTS 55 Query: 56 KARSS---SANADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVL 111 + ++ +A ++ + V+ +++A AR+ + +LA +A + Sbjct: 56 RMKTLVSTAAGSNSWV-QVKTHRTIQDA-----------ARHLKTQGMQILATNLSADAV 103 Query: 112 N-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + I+ G+E+ G++ E +AL++ I P+ + SLN+S A L+++E Sbjct: 104 DFRDVDYTRPTCILLGQEKTGISGEALALADQDIIIPMIGMVQSLNVSVASALILYEAQR 163 Query: 171 NSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + +++P + E L Sbjct: 164 QRQLAGMY--QREDSPLDEEEQQRLL 187 >gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str. 1873] gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str. 1873] Length = 160 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 36/175 (20%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + I+L +P++ +N G + R N ++L L+ P +K+ + Sbjct: 2 SDTPNLNIVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFNIDDKSVKRA--GLDY 56 Query: 68 ID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + + + I R + L+ + A ++ + + V I+F Sbjct: 57 WPYLKLEIHESFDDMI-----------RKYPDANIYLSTTKEAKYHHDEVNYKEGVFIVF 105 Query: 126 GRERWGLTNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GRE GL + I I P+ SLN+S V ++ +E + Sbjct: 106 GRESSGLP-------DYIRDRYIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQ 153 >gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii] Length = 220 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 26/156 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + NIG +AR+ F ++++ LV + + S + S+ + R F + Sbjct: 5 VVVHNVAKRHNIGTLARSATAFGVSEMILVG-KKDFNSFGSHGSAHHVRF-----RHFHS 58 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L EA + E A+ +++ F ++ + G E G Sbjct: 59 LLEARDYLKGIGCDICG-------------VEITEGAVAVHKHPFQ-RSTAFLLGNEGTG 104 Query: 132 LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVW 166 L+ +E+ + + P SLN++ A +++ Sbjct: 105 LSPKEMEICDFFTYIPQVGCGTASLNVTVAASIVLH 140 >gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor 202] Length = 246 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 20/171 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + ++ ++IL N+G R + +V P+D + AR + A Sbjct: 89 LASKSQPLLLILDGVTDPHNLGACLRTADATGV-DAVIV-PKDKSAQLTSTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R ++N V EA + E +G + Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNVWIVGTAGEATSSIYEAKLTGA-IA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQKL 244 >gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 253 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 20/156 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V P+ K + ++ + +D V++ ++ A+A+L Sbjct: 40 PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGSAVAEL 96 Query: 85 HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I AT + + I + I+ G+E+ G+ E +AL+ Sbjct: 97 KASGMQILATHLSDSSVD-------------FRAIDYTKPTAILVGQEKHGIGEEALALA 143 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A +++E ++ Sbjct: 144 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 179 >gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 280 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 12/171 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + + L + N+G + R + + + LV + +A ++ Sbjct: 120 SARDIDPQGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMG 179 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + ++ +A+A + A + P L + Sbjct: 180 SLFHVPLAKMTKEEFKALAK-DWPGTVAATHLKGSVDYRTPDYKQPAL-----------L 227 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E+ GL ++ A +I P SLN++ A + ++E N + Sbjct: 228 VMGNEQKGLEDDTAAACRTLIRIPQVGEADSLNLAVATGISLYEIRRNHLE 278 >gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii 23-P] Length = 175 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 14/165 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DC 66 + ++IL + + NIG V R F + ++ L P+++ ++ A Sbjct: 19 EQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGATESV 78 Query: 67 VIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L E + + + A + V P G+ I+ Sbjct: 79 TWEYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPD-----------KGEKYAIVL 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ E + ++ I P SLNIS +++W+ + Sbjct: 128 GNEVKGVQQEVVDAADVCIEIPQLGTKHSLNISVTAGVVIWDLFQ 172 >gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii DSM 17565] Length = 247 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 32/178 (17%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P ++ V N G +AR + + + + A Sbjct: 88 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPARGSASVNADAVK 142 Query: 60 SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 +SA A + R +L+ + + + AT E + Sbjct: 143 TSAGALHTLPVCR-EQSLRSTLQYLKDSGFRIVAAT---------------EKGDYDYTK 186 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 187 ADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 307] Length = 291 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 17/169 (10%) Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65 + + P ++L+D N+G + R+ F Q + R P A + +++ A Sbjct: 135 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFG-AQAVIAMNRHAAPETGALAKTASGAM 193 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122 +RV NL +AI +L VL A E++ G+ + Sbjct: 194 ERQPYLRV-RNLADAIVELQ----------GMGYMVLGLDGEAEQTIEQVVDGKTDRAIA 242 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E GL ++ +A++ F SLN+S A + ++ + Sbjct: 243 LVLGAEGPGLRDKTKETCDALVKIDFAGEFGSLNVSNAAAVALYATRSS 291 >gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1] Length = 259 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 13/170 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L + G LV Q N+G + R + L L K +SA Sbjct: 103 PTLPLQSLGLC--LVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRASAGQW 160 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + V L AT + ++ + A ++ + Q ++ Sbjct: 161 FRLPMQTVTDGL-----------ATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVM 209 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL S + P P SLN++ A ++++E Sbjct: 210 GNEGQGLPPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQRWRD 259 >gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica str. Tucson] Length = 255 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 22/178 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV L+ ++ T+ A + Sbjct: 144 GASENVPLIRVTNLVRTLRLLQEMNVWVVGTSG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E G+ + +IS P+ + SLN+S A + ++E + + S Sbjct: 190 PMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVRQRLCSPG 247 >gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73] gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73] Length = 158 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDLSDRNLKRA--GMDYLERASLERH 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L D T R +L A I +N ++FGRE G+ + Sbjct: 62 L-----DWQNFIDTMQR---FNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ P+ P SLN++ +V + E + Sbjct: 114 YKAADYALTIPMLPHARSLNLAMSVAITTGEALRQ 148 >gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 242 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L + ++IL + N+G +AR + + + R + A +S A Sbjct: 87 PALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITSTAVKASTGAL 146 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + VRV + L + A +++ T + + + + V Sbjct: 147 QHVPIVRVTNLSQTLDKLKAANFWVFGT---------------DMDGTVYSKWNTKGKVA 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G+ + +I+ P+ SLN S A ++++E N + Sbjct: 192 LIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNRL 242 >gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales bacterium ALC-1] Length = 167 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL-- 84 NIG + R F + +L +D ++ +S + + + ++ N+K+ IA L Sbjct: 29 NIGSLFRIADAFGIEELIFCG-KDVSLGKRMTKTSRSTEKYVTH-KIEENIKDVIARLKT 86 Query: 85 --HFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 HF+ A T +++ + L K Q + +I G E +G++++ I L Sbjct: 87 KNHFLIALEITGNSQDLSQFTLNTK-------------QPIAVILGDENFGVSDDIINLC 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +A+I + S+N+ QA + ++E + Sbjct: 134 DAVIHINMYGNNSSMNVVQATSITLYELTKQ 164 >gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter paludis DSM 18603] Length = 269 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 29/162 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82 N+G +AR + +V P G + +SA A + ++ V S+L + + Sbjct: 128 NVGAIARTAECAGVH--AIVVPAKGSAQINPDTIKTSAGA---LYNIPVCRESSLLQTVK 182 Query: 83 -----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T + I+ G E G++NE I Sbjct: 183 FLQSSGLQIVCCTEKTTDFIYAPDYT---------------LPTAIVMGGEDDGVSNEII 227 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 +++ + P+ SLN+S + ++++E + Sbjct: 228 RIADHLAKIPMYGEIESLNVSVSTGVILYEAIRQKRGGPPAP 269 >gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437] Length = 263 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 22/168 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + PV++L + N+G + R + + L + K S+ + + R Sbjct: 112 EEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMGS---LFRTR 168 Query: 73 VFS-NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +L+EAI +L ++ T+ R PK+ I+ G Sbjct: 169 IRRVDLREAIPELKKQGYWVVGTSPRAERAHFDCHYPKQ--------------TAILLGN 214 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G++ E +L + + P+ SLN+S ++++E + Sbjct: 215 EGKGISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILLFELLRQQWTE 262 >gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium pseudotuberculosis FRC41] gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium pseudotuberculosis FRC41] Length = 157 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 II P + N G R L L P EK + + V + N Sbjct: 7 IIFDQPVIPPNTGNAIRMCAGTG-AHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 65 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ L I+A T + + + ++FG E GL Sbjct: 66 LERCFDSLPHTRIFAFTTHGKTHHSDIR--------------WESGDALLFGTEPTGLAE 111 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + ++ P+ P S+N+S A + +E Sbjct: 112 ETLVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQ 150 >gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827] Length = 226 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 77/176 (43%), Gaps = 19/176 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81 N+ + R+ + + WP ++ + SS+A ++ + +V + + AI Sbjct: 19 PHNVSAIVRSADAVGIHTIH-----AIWPDQQVKLSVSSAAGSNSWV-NVISHPSTEAAI 72 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + L +++N V E A+ E I Q I+ G+E+ G++ + + L++ Sbjct: 73 SQL--------KSQNMQVLVTHLSEQAVDFRE-IDYTQPTCIMVGQEKKGISAKALELAD 123 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + +E + + + + + Sbjct: 124 KHIIIPMVGMVQSLNVSVASALILYEAQRQRQLAGMYS-RETSLLSEQEQQQWLFE 178 >gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343] gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R] Length = 270 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 22/163 (13%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 AK V+I +VD NIG + R+ + + L + +A S + ++ Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175 Query: 70 SVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +L + DL F A T ++ S+ P + + + II G Sbjct: 176 WTWIDGSLSR-LGDLGFRTAAMALT----DDSISIDDPV---------LKTEPKLAIIMG 221 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL E I+ ++ ++ P++ SLN++ A + WE Sbjct: 222 TEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264 >gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 227 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSNLKEAIA 82 G+N + R F + ++ V + P+ VR + EA+A Sbjct: 51 HGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDI----VRGTDQWVDVRRHPSTGEALA 106 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L I ATT + + ++FG E G+++E IA Sbjct: 107 ALRSAGYRIVATTPHREDVTPETFD------------VAAGPFALVFGTEHAGISDEVIA 154 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ + SLN+S + ++++ E Sbjct: 155 GADEFLRIPMCGMVESLNVSASAAILIYMLSER 187 >gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473] Length = 230 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 18/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + Q+ WP+ + + +A V+ ++ +A+ Sbjct: 30 PHNVSAVIRTADAVGIHQIH-----AIWPTTEMYTLLSAAAGSNSWVQVKTHPDIGDAVQ 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +++ + A+ E I + I+ G+E+ G++ + +AL++ Sbjct: 85 HF--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKQALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + ++ TK E L Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYH--RASSMLTKDEQQRLL 187 >gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM 12042] Length = 244 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 19/158 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVR 72 ++L Q N+G + R F Q L++P +EK S+ A I Sbjct: 101 TVVLDGVQDPGNVGTIIRTAVAFGFDQ-VLLSPDCADVYNEKCVRSTQGALFHIAISRTE 159 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L E + T + A L+E S +N+ ++ G E G+ Sbjct: 160 LIPALNELKELGVTVIGTA-------------LQGAQPLSELPVS-ENIAVVLGNEGQGI 205 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + ++ F SLN++ A + ++ Sbjct: 206 RPATLDICDQRALIEMS-SFESLNVAVAAGICLYRYRR 242 >gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans ATCC 17616] gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD1] gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2] gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia multivorans CGD2M] Length = 247 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 17/174 (9%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA+ L + G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYDTKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 194 IVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAKG 247 >gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314] gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314] Length = 173 Score = 66.2 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 22/176 (12%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P + S ++ +P + N G R L LV P +EK Sbjct: 8 IIPRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTG-AHLHLVEPLGFDLTEKHLRR 66 Query: 61 SANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + + V V +N+++ A+ F + T A I Sbjct: 67 AGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATG----------------WFTDITY 110 Query: 118 GQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL +E I A + P+ S+N+S + + +E Sbjct: 111 QPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQ 166 >gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z] gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus succinogenes 130Z] Length = 158 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + I + + + F L K R SG ++FG E G+ Sbjct: 61 KTFERFIE--------SEKPKRLF--ALTTKGGPAHSEVRFESGD--FLMFGPETRGIPM 108 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V + V+E Sbjct: 109 SILDNMPMERKIRIPMTANSRSMNLSNSVAVAVYEAWRQ 147 >gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582] Length = 220 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 29/181 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ V WP+ + R+ SA +V+ + EA+ Sbjct: 19 PHNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNSWVNVKTHRTIGEAVG 73 Query: 83 DLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L I AT +AR + + I+ G+E+ G++ E Sbjct: 74 HLKSQGMQILATNLSARAVDFRDIDYT---------------RPTCILLGQEKSGISEEA 118 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 + L++ I P+ + SLN+S A L+++E ++ +E +T + + Sbjct: 119 LQLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYRREASTLEQEEQQRLLF 177 Query: 197 D 197 + Sbjct: 178 E 178 >gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas naphthalenivorans CJ2] Length = 159 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 39/170 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G V R N +L LV P +K + + +V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GLDYHEYAQV--- 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------II 124 R+ + + Q G ++ Sbjct: 58 -----------------LRHASWPAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLV 100 Query: 125 FGRERWGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FG E GL E AL+ + P+ P SLN+S V + V+E Sbjct: 101 FGSETKGLAPEVRQSFALARRL-KVPMLPGQRSLNLSNTVAVTVFEAWRQ 149 >gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 257 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 21/155 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 IIL D Q N+G + R + + + L + +EK SS + ++ + Sbjct: 109 IILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI 168 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + LK+ + + T+ ++ + + + +FG E G Sbjct: 169 EIVDYLKK--QQYNIVV--TSLQEDSIPYM------------EMSLDERNAFVFGNEGHG 212 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E + +++ + P++ SLN++ A+ ++++ Sbjct: 213 VSKEFLDIADEKVIIPISGQAESLNVAMALGILLF 247 >gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM 15176] Length = 257 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 16/167 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 P L +SA+ + L Q N+G + R+ F + L P P S K SS A Sbjct: 102 PALLDSARRI-LALEGVQDPGNVGTLLRSAAAFGFDAVVL-GPGCAAPFSPKTLRSSMGA 159 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFS-GQNVG 122 + V NL T R R + LA + L+E V Sbjct: 160 AGRLP-VVHTENLP----------GTLHRLRERGVTCLAAALYHSRPLDEEGRDFPAGVC 208 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ G E GLT+E + +A + P+ SLN A +++W Sbjct: 209 VVIGSEGQGLTDETVQACDAAVRIPMTDRVESLNAGVAGSVLLWHFR 255 >gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7805] Length = 229 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 21/177 (11%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72 +LV+ + N+ + R+ + + V+ PR + + + D Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVSLRDHADIST 83 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +LKE +Y T N ++ + G E+WGL Sbjct: 84 AVHHLKE---RSFRLYGT-----NLGVDARDYRDCDFT--------GPCAFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 T E AL + I P+ + SLN+S A +++E + + + + PA Sbjct: 128 TEEATALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQRQAAGLAPLNGEGVPAEH 184 >gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 306 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 19/171 (11%) Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ A+ P+++ L N+G + R+ F + + R + A +SA A Sbjct: 150 RDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMTAAAWKTSAGAASR 209 Query: 68 IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I +V NL AI DL F+ + V PK + V + Sbjct: 210 IPVAQVV-NLARAIDDLKKSGVFVLGL-----DMNGDVELPKLELAR--------EPVCL 255 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E GL+ + I+S P++ SLN A + ++E ++ Sbjct: 256 VVGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVARTRML 306 >gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4] Length = 247 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKA 57 P L K P ++ V N G +AR + + + P G + A Sbjct: 88 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSVSVNADA 140 Query: 58 RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 +SA A + R NL+ + + + AT E Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + II G E G++ E +AL + + P+ SLN+S A ++++E ++ Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] Length = 200 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q NIG + R L ++ L+N + KA + A + + + Sbjct: 55 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYI-T 113 Query: 76 NLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL E IA L K L + + F N ++FG E G+ Sbjct: 114 NLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIE 162 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + P SLN++QA + ++E + + Sbjct: 163 DFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 199 >gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 250 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q NIG + R L ++ L+N + KA + A + + + Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYI-T 163 Query: 76 NLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL E IA L K L + + F N ++FG E G+ Sbjct: 164 NLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIE 212 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + P SLN++QA + ++E + + Sbjct: 213 DFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus JKD6159] Length = 156 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWG 131 +++ TT N +L + + ++ IFG+E G Sbjct: 60 YHDSIEAFFE-------TT----NGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTG 108 Query: 132 LTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + +E + + P++ SLN+S L+++E + Sbjct: 109 LPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150 >gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus influenzae NT127] Length = 246 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R T +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAG-TVAVIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246 >gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha proteobacterium EB080_L58F04] Length = 154 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 17/158 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV P++ N G + R NL +L L+ P SEK + VR+ + Sbjct: 7 IVLVAPEIPHNTGAIGRTCVALNL-ELILIKPYGFSLSEKTVIRA--GTRYWKHVRLCEY 63 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + D R L +E + ++FG E GL + Sbjct: 64 EDWQSFLED---------RQPAQDDLYLF-EEHGQQSFYAPVYKDDGYLVFGCESTGLPS 113 Query: 135 EE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170 E + + I P+ NP+ SLN+S ++++ M Sbjct: 114 EVMLGREDRIFHVPMRNPVVKSLNLSNVATAVIYQAMR 151 >gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 17/177 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + KA +S + Sbjct: 125 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 184 Query: 66 CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + +A+ A + + A A +R+ + ++ G Sbjct: 185 FHLPVAVGVP-VGQAVTGLRDAGVRLLAADGAGDRDLDDEL-----------DKGTMGGP 232 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 233 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 289 >gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath] gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus capsulatus str. Bath] Length = 250 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 11/160 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G R + L + + + ++ A + V +NL Sbjct: 102 VLDHVQDPHNLGACLRTCDAAGVKGLVVTKDQSVGLTPTVAKVASGAAETVP-VYRVTNL 160 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + + V A EA L E + ++ G E GL Sbjct: 161 ARCLDRF---------KQRGYWVVGAAGEAERTLYELDLR-LPLVVVMGAEGVGLRRLTR 210 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN+S A ++++E M + Sbjct: 211 ERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQRSRPAP 250 >gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 178 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++IL + + NIG V R+ F + ++ L P + + ++ A + Sbjct: 21 KAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATDTV 80 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGR 127 N + L + + E A +LN+ + Q ++FG Sbjct: 81 TW-EYVENTVSLVKKL--------KAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGN 131 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ E ++ S+A+I P SLNIS + +++W+ Sbjct: 132 EVKGVQQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLWDLFS 174 >gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 154 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 + +P++ N G R T L LV P G+ +AR A D + V V + Sbjct: 4 VAFFEPRIPGNTGNAIRMAAGTGAT-LHLVEPL-GFDLSEARLRRAGLDYHDLAHVVVHA 61 Query: 76 NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +A+ D+ + A T A + ++ ++FG E GL Sbjct: 62 SF-DALLDVLPGSRVLAFTT--------------QATTSFADVGYREDDVLLFGPEPTGL 106 Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + P+ P S+N+S A + +E Sbjct: 107 PADVLAHPRVTDQLRIPMLPGRRSMNLSNAAAVATYEAWRQ 147 >gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 12/160 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L N+G + R+ F L L R+ P + S+A A + +R N Sbjct: 121 VLDQVSDPHNLGAIFRSAAAFGFEGLVL-QTRNAPPITGIVAKSAAGAIETVTEIRAV-N 178 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ L +F +V E+ L+E + V I+ G E GL Sbjct: 179 IARALEQL---------AEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAV 229 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + P+ SLN+S A + +E S + Sbjct: 230 AKACSELARIPIAAQMESLNVSNAAAIAFYEASRGSFPAR 269 >gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes WB4] gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes WB4] Length = 177 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + AK P +++L + + N+G V R F + + L P + ++ A+ Sbjct: 16 EFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + F + +A+ +L T S L P+ + ++ Sbjct: 76 NTVTW-KYFEDTHQALEELKAQAYTVFAIEQAAGSTLLPEL-------ALNPAMKYAVVL 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ + + I P SLN+S +++WE Sbjct: 128 GNEVKGVQQSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFR 172 >gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 178 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 15/169 (8%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + ++S K P+I IL + + NIG V R F + ++ L P + + ++ A Sbjct: 16 EEFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGA 75 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNV 121 +D V + L E + DL V++ ++A ++ + Q Sbjct: 76 TQTVDWAYVENTL-EVVKDLQ----------QQGVKVMSIEQAEDSISLKDFNPRQNQLY 124 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ E + S+ ++ P SLNIS + VW+ M Sbjct: 125 ALVLGHEVKGVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFMS 173 >gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 186 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R F + L L A ++ + ++ + ++A+ + Sbjct: 40 PFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWSQ-AGTPQQAVREA 98 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 H ++ L AI L+ G +V + G E G + + ++A+ Sbjct: 99 H--------DQGLRVIALELAGGAIPLHRAPLEG-DVCLAVGGEDHGCSPALLEAADAVA 149 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 P SLN++ A + + E + +++ Sbjct: 150 YIPQIGRVGSLNVAVATAIALAEARRREWAALGEDLP 186 >gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 244 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 73/181 (40%), Gaps = 17/181 (9%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP Q+ N+ + + +L D N+ + R+ F L + +V P++G+ Sbjct: 1 MTPERLARIKQVLNTRQPDLRVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +A +A + + A+ +L A+ + + L+ + A+ E Sbjct: 58 RAFRKTAGGSFHWVTTHTHPTMDNAVTELK------AQGHKLYAAQLSDR--AVDFREVD 109 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ II G E G+ ++ I P+ + SLN+S A +++ E ++ Sbjct: 110 YTV-PCTIIMGNEVDGVNPVTAEQADEHIVIPMMGMVESLNVSSACSIILSEAQRQRKLA 168 Query: 176 S 176 Sbjct: 169 G 169 >gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46] gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46] Length = 270 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 22/163 (13%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 AK V+I +VD NIG + R+ + + L + +A S + ++ Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175 Query: 70 SVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +L + DL F A T ++ S+ P + + + II G Sbjct: 176 WTWIDGSLSR-LGDLGFRTAAMALT----DDSISIDDPV---------LKTEPKLAIIMG 221 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL E I+ ++ ++ P++ SLN++ A + WE Sbjct: 222 TEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264 >gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606] Length = 183 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 14/172 (8%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P V++L D + N+G V R+ F + + L P+ + ++ + Sbjct: 19 EFKEAKKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGE 78 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNV 121 + R FS ++A+ +L + + F + E +I L + + + Sbjct: 79 DSVAW-RYFSRAEDAVTELQ--------SHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGY 129 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++FG E G+ E + +S+ + P SLN+S +++WE + Sbjct: 130 AVVFGNEVKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTRKLL 181 >gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter aphrophilus NJ8700] Length = 245 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ +++L N+G R + + + + + AR + A Sbjct: 89 LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNAVIVTKDKSAQLNSTARKVACGAAEN 148 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +RV +NL + +L R+N V E L + +G + ++ G Sbjct: 149 VPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 199 EGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 161 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P + N G R L L+ P ++ + + V V + Sbjct: 11 VVFEHPVIPPNTGNAIRMCAGTG-AHLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDS 69 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A L ++A T N V ++FG E GLT+ Sbjct: 70 LDACLATLPGARVFAFTGHCSNMLFDVRF--------------APGDVLLFGTEPTGLTD 115 Query: 135 EEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + + P+ S+N+S A + +E Sbjct: 116 EAMNH-DRVTQKVRIPMLEGRRSMNLSNAAAVATYEAWRQ 154 >gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu] Length = 247 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA+ L + G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYDTKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G+ + ++S P+ SLN+S A + ++E + V + Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVKA 247 >gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483] gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 3_1_23] gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 247 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57 P L K P ++ V N G +AR + + + P G + A Sbjct: 88 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 140 Query: 58 RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 +SA A + R NL+ + + + AT E Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + II G E G++ E +AL + + P+ SLN+S A ++++E ++ Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274 str. F0058] Length = 182 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 15/168 (8%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + AK P++ IL + + NIG V R F + ++ L P+ + S+ A Sbjct: 17 EYRRMAKIPLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGA- 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVG 122 + + EA + + R+ VLA ++ + + I Sbjct: 76 ---EFSVRWEYSPEAQIPVRTL-------RDEGYRVLAVEQTQDSMPLDSLHIEGAAKYA 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++FG E G+ I L + + P SLN+S A ++VW E Sbjct: 126 LVFGNEVSGVEQATIDLCDGSVEIPQYGTKHSLNVSVACGIVVWTFFE 173 >gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM 13280] Length = 308 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 19/175 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + V++L N G + R+ + + N R + + Sbjct: 143 LSDIIAAAPAGSPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKT 202 Query: 61 SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 SA A + +V N+ A+ DL ++ T E A + Sbjct: 203 SAGAVMHLPIAQV-PNIARALEDLKSAGFWVGGAT--------------EHAEDVCWDAP 247 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E G++ + + P SLN++QA + +E M Sbjct: 248 FEGRVALVMGSEGDGISRLVLDTCDFTTKLPQRGETESLNVAQAATALCFEWMRR 302 >gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72] gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72] Length = 263 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 19/163 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L Q N+G + R + + L S + + A + + ++ Sbjct: 117 VVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHL-RIHECTD 175 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A A AR ++ +++ L V +FG E GL+ Sbjct: 176 LAGLLATYPGAVLATALDARAKSLYETDLR---------------GPVAWLFGAEGQGLS 220 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 AL+ + P+ SLN++ A + ++E Sbjct: 221 EAAKALATGTVLIPMAAGIESLNVAAAAAVCLFEQRRQRAARG 263 >gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 254 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 16/164 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A +I + V Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIIPLIYV 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132 + I T + A + I S + IIFG E G+ Sbjct: 162 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGM 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ SLN+S A + ++ + S+ Sbjct: 211 RRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254 >gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 266 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 10/172 (5%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P P V++L EN+G + R L PR P + Sbjct: 103 APLDPARLLDEARIVVVLEGVNDHENLGSIFRNCAALG-ADAVLFGPRCSDPLYRRAVRV 161 Query: 62 ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++ F++L A D + A R L P + V + Sbjct: 162 SMGHVLL---VPFAHLPAAGWPGDGLALLA----ERGFRTVALTPSGESTVAQALAGRPE 214 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E GL+ E +A ++ + P++ SLN++ A + ++ECM Sbjct: 215 RVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSLNVATATAVALYECMSQ 266 >gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J] gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J] Length = 260 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 16/167 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 +L + +IL Q N+G + R + + P + S K ++ A Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + F + +R +LA A + VG +F Sbjct: 165 FHLN----------IVEHCTFQ---SVHSR-LRVPLLATSSHAKQAVFDVPLSSPVGWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ E ++ ++ P SLN++ A + ++E + Sbjct: 211 GNEGAGVSQEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQR 257 >gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae Eb661] Length = 245 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 28/176 (15%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P ++IL N+G R+ + +V PRD + A+ ++ Sbjct: 86 PDLLESLDSPFLLILDGITDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAS 143 Query: 63 NADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A V + R L++A +I T A + Sbjct: 144 GAAEHVPLITVTNLARTMRVLQDA---NVWIVGTAG--------------EADHNLYQSK 186 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P++ SLN+S A + ++E + Sbjct: 187 MTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVRQR 242 >gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23] Length = 175 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N +A+ +L +N + E +I+ +E ++ + Sbjct: 73 GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMFDELQLDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 20/175 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R + Q+ V WP + R+ +A ++ + SV+ ++ A+ Sbjct: 30 PHNVSAVIRTADAVGVHQVHAV-----WPGKTMRTMVSTAAGSNSWV-SVKTHPDISSAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + T + A+ E I + I+ G+E++G+T E +AL++ Sbjct: 84 S--------TLKAEGMQILATNLSSTAVDFRE-IDYTRPTCILMGQEKYGITAEALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + +++P + + L Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMY--QREHSPLSDEDQQRLL 187 >gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 276 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 12/160 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G ++I V+ N+G + R + L + KA SSA + Sbjct: 127 SGCLVIPVECNDPGNVGTIVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGS-------- 178 Query: 73 VFSNLKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 VF D+ + R R F ++ + A+ L V +FG E G Sbjct: 179 VFHTPVARERDIDVVV---ERVREAGFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHG 235 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E A + A ++ P+ SLN++ A + +WE + Sbjct: 236 LSEEITASAGASVAIPIKGEAESLNLATAAAMCLWETVRG 275 >gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium multivorum AIU301] Length = 276 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%) Query: 6 PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P L ++ K GPV++L N+G + R+ F + + R+ E+ + + Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAA-MVIAQERNAP--EEGGALAKA 176 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++ + + + A A + A + L+ + + Sbjct: 177 ASGALERIPLLRTVNIARALIALKAA-------GLWVMGLDAAGLSHLSRDAIGNRRAAL 229 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E GL + ++S P+ SLN+S A + ++E + Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 154 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 23/160 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L PQ+ +N G + R + L LV P +++ + + +++V Sbjct: 4 VVLYQPQIPQNTGNIVRTCSVTG-SDLYLVAPLGFQITDRWLKRA--GLDYWEGVNMQVL 60 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL+E + F + ++ R K + ++FG E GL Sbjct: 61 ENLEEVLESQQTPFYFFSSHAKRPYSKISFTTDDW---------------LVFGSETHGL 105 Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + IS P+ LN++ +V + V+E Sbjct: 106 PKTFVEKWPEKFISLPMIEGKRCLNLATSVGIAVYEAYRQ 145 >gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 21/170 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANAD 65 LQ ++IL N+G R +T +V P+DG S AR + A Sbjct: 91 LQRQDSPLLLILDGVTDPHNLGACLRTADAAGVT--AVVVPQDGAAGLSPVARKVACGAA 148 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + VRV + L + A ++ T+ + L E+ FSG V Sbjct: 149 DTVPFVRVTNLARTLGQLKAAGVWLIGTSDKASRT-------------LFEQDFSG-PVA 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 195 IVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFEAVRQR 244 >gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. NATL2A] Length = 166 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 29/168 (17%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P + L +P++ +N G + R FN++ L ++ P +K + Sbjct: 5 NRTRPRVALFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRA--GLDYWPH 61 Query: 71 VRV--FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V V + + ++ I A T ++ N ++ I+ ++ ++FG Sbjct: 62 VDVHLYESFEQYKNSFKNSRIIALTKKSNNL-------------ISNIIYKDTDI-LLFG 107 Query: 127 RERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166 RE GL I + P+ SLN+S A ++ + Sbjct: 108 REDTGLPESIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCY 155 >gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09] Length = 246 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 32/162 (19%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNL 77 VDPQ N+G R + L+ P+D + R + + V V +NL Sbjct: 107 VDPQ---NLGACFRVADAMGVD--ALICPKDNAVGLNATVRKVACGGAESVPFV-VVTNL 160 Query: 78 KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131 I L F+Y T + A ++ ++ ++ G E G Sbjct: 161 ARTIRYLKNSNVFVYGT--------------DDNANKSLQKTNFKGSIALVMGSEGKGMR 206 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 LTNE L + I S P+ SLN+S A + ++E Sbjct: 207 RLTNE---LCDDIFSIPMMGQVESLNVSVASGICLYEINRQR 245 >gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 153 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 20/158 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76 L P++ N G +AR +L +V SEKA + D V+++ S+ Sbjct: 7 LYRPEIPPNTGNIARLCVALG-AELHIVGQASFDLSEKAARRA--GLDYWDKVKIYFHSS 63 Query: 77 LKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+E + A + N + + +FG E G+ E Sbjct: 64 LEE------YKVALPSGTNLYLISIY------GKRSYTNVSYRKGDAFLFGNETSGVPLE 111 Query: 136 EIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ P+ LN+S +V ++ +E M Sbjct: 112 IKNSWDQERILKIPMEDSSRCLNLSNSVAVISYEAMRQ 149 >gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 299 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 11/177 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +I+L ++ NIG + R + + LV+ +++ ++ V Sbjct: 115 TGDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSDLATIADRRLVRASRG-YVFSLPI 173 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V ++ +AIA R V E + ++E + + + ++ G E+ G Sbjct: 174 VLASRADAIAHFR---------RTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGT 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPAT 188 + ++++ +S P+NP SLN+S + ++E ++ + + PA Sbjct: 225 SRSFESIASHSVSIPINPAAESLNVSVCAGIALYERRHWNLADRRSPHAPRADRPAA 281 >gi|167946047|ref|ZP_02533121.1| rRNA methyltransferase, TrmH family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T+AR R+ +VL P+E + E G+ V ++FGRE GL+NEE+ Sbjct: 10 VGLVIGTSARERSVAWAVLNPRECGGQVIEEAAVGE-VALVFGRENSGLSNEELDR 64 >gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium 104] gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium avium 104] Length = 154 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 21/165 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P++ N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLA 64 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+ + T+ A + ++FG E GL Sbjct: 65 AAWDALTPARVVAFTS---------------HAPASFAELRYRPGDVLMFGPEPTGLDAA 109 Query: 136 EIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +A + + P+ SLN+S A + V+E + Sbjct: 110 TLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGAT 154 >gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 258 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL NIG + R FN+ L L P + PSE A S + A +D + Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PYNHSPSENA-SIAKAASGTLD---IVP 157 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134 + + + T + A + I S G+ + IIFG E G+ Sbjct: 158 -----LIHVTNVVKTMEYLKKVGYWCYGFDSNAKENIDEIKSFGKKIVIIFGSEGKGMRR 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P++ + SLN+S A + ++ ++ Sbjct: 213 LVKENCDYLLKIPMSNVIDSLNVSNAAAIGLYSVYTKTL 251 >gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 261 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 20/170 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + PV++L P+ N G V R F T + D W R + + Sbjct: 112 RTPRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 166 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V L+ A L + + + + FG E Sbjct: 167 HFATVVERLEVA---------------GLPPGPLFALDPEGEDIRGLELPDDALLAFGSE 211 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 R GLT E A ++ +++ P+ P S N++ +V + ++ Sbjct: 212 RSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHWSAGGGAPRVP 261 >gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5] gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum JF-5] Length = 276 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%) Query: 6 PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P L ++ K GPV++L N+G + R+ F + + R+ E+ + + Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAA-MVIAQERNAP--EEGGALAKA 176 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++ + + + A A + A + L+ + + Sbjct: 177 ASGALERIPLLRTVNIARALIALKAA-------GLWVMGLDAAGLSHLSRDAIGNRRAAL 229 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E GL + ++S P+ SLN+S A + ++E + Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276 >gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70] Length = 245 Score = 65.9 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A + RV + Sbjct: 97 ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLA 156 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ +++++S+ + ++ G E G+ Sbjct: 157 RTIDELKERGVWIVGTDAKAKDDYRSL--------------DGTMPLALVIGSEGKGIGR 202 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + +I P+ SLN S A L+++E E Sbjct: 203 LILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVYRKRYPQGE 245 >gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4] Length = 281 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R+ F + + L + ++ +S A + + A A H Sbjct: 137 NIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQ------AASATSHT 190 Query: 87 IYATTA---RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A TA + A + A+ LN ++ S + FG E WGL+ E A + Sbjct: 191 WAADTACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKALWFGSEGWGLSQEARAACDM 250 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN++ + + WEC ++ Sbjct: 251 SVMIPMQRGIDSLNVAASSAVFFWECARSA 280 >gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f. nagariensis] gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f. nagariensis] Length = 155 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++LV PQ+ +N G VAR L LV P ++ + D+V V Sbjct: 1 VVLVHPQIPQNTGNVARTCAATAAP-LHLVGPLGFQLDDRKLKRA--GLDYWDAVAVNTH 57 Query: 75 SNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S+ A + A T + + L +FG E Sbjct: 58 SSWDAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWL------------VFGAE 105 Query: 129 RWGLT----NEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171 GL ++ +A ++ P+ S+N+S AV + ++E + Sbjct: 106 TSGLPPKAHSDVLASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQ 153 >gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 267 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 20/162 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ +I +VD NIG + R+ + + L + +A S + +I Sbjct: 119 ARRIAVIEGVVDTT---NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + E + A T ++ + +L + + I+ G Sbjct: 176 WAWLDGSPNELHKLGFRTVAMALTEKSISIDSPIL-------------ATEPKLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL NE I ++ ++ P+ SLN++ A + W+ Sbjct: 223 EGDGLRNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264 >gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium chloromethanicum CM4] Length = 268 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F +T +V P+ A+S+S + V + + NL EA+ Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + L A + + + ++ G E GL + Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ SLN+S A + ++ +S ++ Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSSGTAA 268 >gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC 11170] Length = 348 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 17/168 (10%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 GP ++ L NIG V R+ F + + +V +D E+ + + +A ++ Sbjct: 194 IPGPSVVAILDQVSDPHNIGAVLRSAAAFGI-RAVVV--QDRHSPEETGTLAKSASGTLE 250 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + NL +A+ + F +A + ++ G Sbjct: 251 RVPLVRAINLSQALDTF---------KEHGFWCA-GLDASAETTLAEAALPERCVVVLGS 300 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E GL + ++ ++ SLN+S A + +E + Sbjct: 301 EGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYELSGRGLRP 348 >gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 150 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74 I+L++P++ N G + R +L LV P + + V+ + Sbjct: 4 IVLINPEIPNNTGNIGRLALGSGC-KLHLVKPFGFEIDDTRLKRA--GLDYWQHLDVQYY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N ++ F + P E +++ ++FG+E GL Sbjct: 61 DNTEDFFNKNAFAKMAFLSSHGTKSHYDIPFE------------EDLFLVFGKESKGLPK 108 Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 E + + P+ + SLN++ AV ++ +E + Sbjct: 109 EITEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQ 147 >gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM 74] Length = 276 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 27/158 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA-- 82 N G +AR + + + + A +S+ A ++ + V +L E + Sbjct: 132 NFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGA---LNHISVCREPDLTETVKYL 188 Query: 83 ---DLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + T +AR+ + L + II G E G++ E + Sbjct: 189 QESGITVVACTEKSARDLYERTTDLT---------------GPMAIIMGSEEDGISPELL 233 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + + P+ SLN+S A ++++E + + Sbjct: 234 RMVDTHVKIPLLGAVGSLNVSVATGVILYEAVRQRSLP 271 >gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 267 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 20/162 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ +I +VD NIG + R+ + + L + +A S + +I Sbjct: 119 ARRIAVIEGVVDTT---NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + E + A T ++ + +L + + I+ G Sbjct: 176 WAWLDGSPNELHKLGFRTVAMALTEKSISIDSPIL-------------ATEPKLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL NE I ++ ++ P+ SLN++ A + W+ Sbjct: 223 EGDGLRNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264 >gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39] Length = 255 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 20/174 (11%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + + P+I IL N+G +AR + + + + A +SA A Sbjct: 97 PAVYEKGETPLILILDGITDVRNMGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGA 156 Query: 65 DCVIDSVRVFSNLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 I R NL + + + I A T E L Sbjct: 157 LFTIPVCR-HPNLHKTALFLQECGLQIVACT--------------EKTNDLIYAPDYTTP 201 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 I+ G E G++NE + ++N + P+ SLN+S + ++++E + + Sbjct: 202 TAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVSVSAGVILYEAIRQRTL 255 >gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT] gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT] Length = 265 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 11/159 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + + R+ + +SA A + +V + Sbjct: 118 ILVLDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKV-A 176 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI ++ A + + F G V ++ G E G++ Sbjct: 177 NINRAIDEI---------KERGIWVYGADMDGENYCFQTNFKGA-VALVIGSEGKGISKL 226 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + +I P+ SLN S A +M++E ++ ++ Sbjct: 227 TKQKCDVLIKIPMVGKITSLNASVAAGIMMYEVLKQNME 265 >gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1] gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1] gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 24/187 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74 ++L + N+ V R + ++ +V NP + + D +D V+++ Sbjct: 42 TVVLDRLEDSFNMAAVLRTCEAMGVQEVHVVINPEAPFLPNS--RVAQGCDKWLD-VKLY 98 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E L R A +E A L F V I+FG ER+G++ Sbjct: 99 KTFAECREHLQ--------ERGFALYASAIREGATSLYSMRFD-SKVAIVFGNERFGVSE 149 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVL-----LMVWECMENSIVSSEKNVKEQNTPATK 189 + +A + P+ S+NIS A +M W + ++ E+ A + Sbjct: 150 DVLAGVDGTFWIPMRGFSQSINISAAASACVSRVMAW---REEHLGKVGDLTEEEAQALR 206 Query: 190 GELLSFL 196 F Sbjct: 207 ---ERFY 210 >gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40] gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40] Length = 248 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 23/168 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSV 71 +++L N+G R+ L + P+D +E AR + A + + Sbjct: 98 PLIVVLDGVTDPHNLGACLRSADAAGAHALIV--PKDNSVGLTEVARKVACGAADNVP-L 154 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V +NL + + ++ TT + KS+ + I+ G Sbjct: 155 IVVTNLARCLKKMQEQGLWVAGTTG---DTDKSIYDVDLTGPRV-----------IVMGA 200 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G+ + ++ P+ SLN+S A ++++E + Sbjct: 201 EGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEVVRQRQAK 248 >gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18] gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18] Length = 224 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 29/159 (18%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLK-- 78 P++ N G R +L LV P G+ + A A D + V V L+ Sbjct: 78 PEIPGNTGNAIRLAAITG-AELHLVKPL-GFNFDDAHLRRAGLDYHDLAVVTVHETLEDA 135 Query: 79 -EAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA+A + F + TTA +FG E GL E Sbjct: 136 WEALAPERVFAFTTTASTSYADIEYR----------------PGDVFMFGPESVGLP-AE 178 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 + + +S P+ P SLN++ + + V+E Sbjct: 179 VQQ-DPHVSERVKIPMKPGRRSLNLANSASIAVFEAWRQ 216 >gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99] gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99] Length = 231 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP + R+ SA V+ ++ +A++ Sbjct: 30 PHNVSAVIRTADAIGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHRSIADAVS 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +N E A+ E + + I+ G+E+ G+T E + L++ Sbjct: 85 --------CLKGQNMQILATHLSEKAVDFRE-VDYTRPTCILMGQEKTGITQEALELADR 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + +E + ++ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREESSLEYSEQQRLLF 188 >gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sibiricum 255-15] Length = 157 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 +++ P++ +N G ++R + L L+ P +K + + VR Sbjct: 5 VVMYQPEIPQNTGNISRTCAAT-HSVLHLIRPLGFSTDDKQLKRA--GLDYWEFVDVRYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 +L+E + D H F + E + ++ +FGRE GL Sbjct: 62 DSLEE-LWDKH--------PDGTFYYITKYGEKYPSQVDLSNVEEDYFFVFGRETKGLPL 112 Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E + I P + L SLN+S ++V+E + Sbjct: 113 NVIDENLERC---IRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151 >gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 235 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 27/180 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81 N+ V R + Q+ WP + R SS+A ++ + V+ S +++AI Sbjct: 30 PHNVSAVIRTADAIGIHQIH-----AIWPDQSLRTQLSSAAGSNSWV-QVQTHSTIQQAI 83 Query: 82 A----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 D + AT ++ V +I + II G+E+ G++ + + Sbjct: 84 EQFKSDGMQVLATHLSDK-------------AVDFRQIDYTKPTCIIMGQEKKGISKQAV 130 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 AL++ I P+ + SLN+S A L+++E + +E++ + + + + Sbjct: 131 ALADHDIIIPMAGMVQSLNVSVASALILYEAQRQRQLVGMYQ-REESILSEEEQQKLLFE 189 >gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665] gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665] Length = 186 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 48/197 (24%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P P+ + I+L+ P++ N G R +L LV P G+ E A Sbjct: 21 APGTPEFR-------ILLLTPEIPGNTGNAIRLAALTG-AELHLVEPL-GFGFEDAHLRR 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLH-------------FIYATTARNRNNFKSVLAPKEAA 108 A D + +L A+ +H + A TAR Sbjct: 72 AGLD--------YHDL--AVVTVHPDLDAALAALAPARVLAFTAR--------------G 107 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166 V ++R+ ++FGRE GL E +A + P+ P SLN++ AV + V+ Sbjct: 108 SVRHDRVAYRPGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVY 167 Query: 167 ECMENSIVSSEKNVKEQ 183 E + + Sbjct: 168 EAWRQHDFAGSAAHPDS 184 >gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 156 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 37/176 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+L +P++ N G + R N +L L+ P G+P E A+ A D S++V Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTG-AKLHLIEPL-GFPMEDAKLRRAGLDYHEFASIKVHP 61 Query: 76 N----LK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N L+ E H TT + + P + +FG E Sbjct: 62 NWGHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDY---------------FVFGSETK 106 Query: 131 GLTNEEIALSNAIISFP--------VNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G+T EE+ S P + SLN+S V ++V+E + ++ K Sbjct: 107 GIT-EEVRN-----SIPKMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQNGLAGGK 156 >gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus HTCC2559] Length = 171 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 14/173 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +T + + N+ V++L N+G + R F +T+ +V R +R Sbjct: 4 LTHHQTEFPNTQFPIVLVLDQLTSPANLGSIFRLADAFGITK--IVQYRCDIDMNSSRFK 61 Query: 61 SANADCVIDSVRVFSNL--KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + R + E I D+ Y T+ ++ L +++ ++ S Sbjct: 62 --------RTARTTNTTVPSERIDDIS-SYITSLKSDGYTTIALEITDSSKPIDAIPLSS 112 Query: 119 QN-VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +N + +I G ER G++ + + + + S+N++QA + +++ + Sbjct: 113 ENKLILIIGSERKGVSEQLLKHCDFATHITMFGKNSSMNVAQATGIALFQITK 165 >gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A] gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 280 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 20/184 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 S + +I + + E + A T ++ + +L + Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKLGFRTVAMALTEKSISIDNPIL-------------ATE 213 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + Sbjct: 214 PKLAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273 Query: 179 NVKE 182 + Sbjct: 274 LPDD 277 >gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1] gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium extorquens PA1] Length = 268 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F +T +V P+ A+S+S + V + + NL EA+ Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + L A + + + ++ G E GL + Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ SLN+S A + ++ ++ ++ Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSAGTAA 268 >gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri ATCC 29453] Length = 249 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 23/182 (12%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + + ++ + P +LV N+G R + ++ P+D + Sbjct: 84 HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A + + V + L+E ++ T + P Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLFHYDIP------------ 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 Q V + G E G+ +A++S P+ S+NIS + +++ E + S Sbjct: 190 --QAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQREMKS 247 Query: 177 EK 178 + Sbjct: 248 VQ 249 >gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM 12042] Length = 261 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 17/166 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + G ++IL + + N+G V R + L R + S A Sbjct: 102 ERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVILRKNRSVSLNSTVAKVSTGAI 161 Query: 66 CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V LK+ +++Y T RN +++ + V Sbjct: 162 ETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYR--------------QPAFDTPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ G E G++ + +++ P+ SLN S A +++++ Sbjct: 208 LVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLYQI 253 >gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC 33386] Length = 256 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 G V+IL D Q NIG + R M L L + K ++ + Sbjct: 102 EEIDGDVVILDDVQDPGNIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGG--IFK 159 Query: 70 SVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 S ++ + E + D ++ +T ++N + + L E+ IFG Sbjct: 160 SNIIYETPERITEFLKDNNYQVISTLLDKN------SIDYRDVELKEK------NAYIFG 207 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+++ I ++ P+ SLN+S A + +++ E Sbjct: 208 NEGHGISDIFIESTDIKAIIPIYGDVDSLNVSVASGIFLYKMRE 251 >gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 245 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L+ +++L N+G R + +V P+D + AR + A Sbjct: 89 LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGV-NAVIV-PKDKSAQLNSTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + +RV +NL + +L R+N V E L + +G + ++ Sbjct: 147 ENVPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 367 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 12/149 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R+ +F + +V+ S A ++ + +++ + + Sbjct: 228 SNPHNLGAMLRSCAHFGVNS-VMVSDSALLDSGAAVRTAEGGAEHVKAIKC----DDVLQ 282 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL R + +V+ + + ++ G E L+ ++ ++ Sbjct: 283 DLQ-------RFQRAGYTVVTLAGNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQADI 335 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + PSLN+S + +++ E Sbjct: 336 AVTINGSGRVPSLNVSVSAGILLAEWWRQ 364 >gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 227 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 19/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP+E +SA A +D V +++EAI+ Sbjct: 30 PNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEEAIS 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ + V +I + II G E+ G + + L++ Sbjct: 84 EL---------KSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A ++++E + + + P + + L Sbjct: 135 DIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNDVSSVP--QETIHRLL 186 >gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4] gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1] gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4] Length = 268 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F +T +V P+ A+S+S + V + + NL EA+ Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + L A + + + ++ G E GL + Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ SLN+S A + ++ ++ ++ Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSAGTAA 268 >gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii ATCC 33806] gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium matruchotii ATCC 14266] gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii ATCC 33806] gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium matruchotii ATCC 14266] Length = 178 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 22/180 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 II P + N G R N T L L P +K + +V+V+ N Sbjct: 12 IIFDQPCIPPNTGNAIRLCANTGAT-LHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKN 70 Query: 77 LKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+ L H ++A ++ + + + + ++FG E GL Sbjct: 71 LQNCFDTLPEHQHRVFAFSS-HGTTTHTDITYRF-------------GDVLLFGTEPTGL 116 Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATK 189 + I+ P+ P S+N++ A + ++E + + + A+ Sbjct: 117 DESALHHPRITEIVRIPMRPGIRSMNLANAASVAIYEVWRQLGYPGAADPTMPDSHNASS 176 >gi|255626589|gb|ACU13639.1| unknown [Glycine max] Length = 218 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 36/161 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ F +++L LV R + + SS++ R F + Sbjct: 7 VVVHNIAKRHNVGTLARSATAFGVSELILVG-RRDFNCFGSHGSSSHLRF-----RHFHS 60 Query: 77 LKEA---IADLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L++A + D F TT N ++ + G E Sbjct: 61 LQDARKFLKDKDFDICGVEITTDSLPVNQHPFT----------------KSTAFLLGNEG 104 Query: 130 WGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166 GL+ +EI + + P + SLN++ A +++ Sbjct: 105 TGLSPKEIEICGFFVYIP---QYGGGTASLNVTVAASIVLH 142 >gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328] Length = 259 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 11/153 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + L L + K +SA A + V S+L ++ Sbjct: 118 QDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIA-VHSDLITQLS 176 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ++ V+A + A + I Q I+ G E GL+ + +L++ Sbjct: 177 N----------SQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADY 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I P+ SLN++ L+++E + + Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQRLDT 259 >gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444] gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC 15444] Length = 271 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 12/164 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + I L + + N+G + R ++ + L+ S +A +S + Sbjct: 117 KPAGTPLYIALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMGS---- 172 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 VF + A D A + S+ A V ++ I+ G E Sbjct: 173 ----VFD-VPFAHTDFD---AFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNE 224 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + GL + A + + P+ SLN++QA LM++E Sbjct: 225 QAGLPDWVEAACDTLSLIPMRGGADSLNLAQASALMIYEAWRQR 268 >gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 161 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 19/175 (10%) Query: 8 LQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + ++ PV +L V N+G RA NL +L L P + ++ A Sbjct: 1 MSDPSRLPVAVLLDNVRSMY--NVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGA 58 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VG 122 + + + ++ A R LA E + V Sbjct: 59 EETVPWEHGWDAVE---------MAKHLRAEGFQ---LAAIETNPEATDLFDWQPRFPVC 106 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++FG E GL E +AL++ + P+ SLN++ A ++++E + Sbjct: 107 VVFGHEVGGLLPELLALADVHMRIPMRGEKTSLNVATAGGVVLYELLRKYQALQP 161 >gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88] gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88] Length = 162 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 29/164 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70 I+L P++ +N G +AR LT L L+ P EK + D ++ Sbjct: 12 IVLFQPEIPQNTGNIARTCV---LTDSKLHLIKPLGFSLDEKHLKRA-GLDYWSQLSLEI 67 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L++ D F ++TT ++ K+ + + I+FGRE Sbjct: 68 HESYEDLRKKYKDGKFYFSTT----HSTKTYSDVEFE-----------EGDFIVFGRETS 112 Query: 131 GLTN--EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL + E + I P+ SLN+S V ++ +E + Sbjct: 113 GLPDYVREDNR-DTCIKVPMIKSSTRSLNLSNTVAIVTYEALRQ 155 >gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont] Length = 142 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 37/162 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-------RDGWPSEKARSSSANADCVID 69 I+L +P++ N G + R N QL L+ P + G + + +A Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRGLDYHEYTALKKHAS---- 58 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ A A TT + P + ++FG E Sbjct: 59 ----YAAFLAAEAPQRLFALTTKGTPAHSAVSYQPGDY---------------LLFGPES 99 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E + + P S+N+S AV ++V+E Sbjct: 100 RGLPPEILN------ALPAEQKIRSMNLSNAVSVVVYEAWRQ 135 >gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1] Length = 244 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S + P +++L N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASGA 145 Query: 65 DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV + L+ + + + ++ T A + Sbjct: 146 AENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVFQSKMTGP 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 151 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+LV+P++ N G + R +L L++P ++K S V +D + + Sbjct: 4 IVLVEPEIPNNTGNIGRLCVGTG-NRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQYKN 62 Query: 76 NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + I D ++ ++ A + ++FG+E GL+ Sbjct: 63 TQEWIDQIPDKSRVFMMSS--------------HAQTSYYEANFQEGDWLVFGKESVGLS 108 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + L ++ P++ S NI+ +V +V E Sbjct: 109 KEILNLFENHLTIPMSDKIRSYNIANSVAFVVGEARRQ 146 >gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 147 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G +AR + + + P G + A +SA A + R NL+ + Sbjct: 10 NFGAIARTCECAAVDAVII--PVRGSASVNADAVKTSAGALHTLPVCR-EQNLRSTLQYL 66 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + AT E + + II G E G++ E +AL Sbjct: 67 KDSGFRIVAAT---------------EKGDYDYTKADYTGPLCIIMGAEDTGVSYENLAL 111 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A ++++E ++ Sbjct: 112 CDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 144 >gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 245 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L+ +++L N+G R + +V P+D + AR + A Sbjct: 89 LEQQNTPLLLVLDGVTDPHNLGACLRTADAAGV-NAVIV-PKDKSAQLNSTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + +RV +NL + +L R+N V E L + +G + ++ Sbjct: 147 ENVPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 197 GAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185] Length = 247 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 32/178 (17%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P ++ V N G +AR + + + + A Sbjct: 88 PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPARGSASVNADAVK 142 Query: 60 SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 +SA A + R NL+ + + + AT E + Sbjct: 143 TSAGALHTLPVCR-EQNLRATLQYLKDSGFRIVAAT---------------EKGDYDYTK 186 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G++ + +AL + + P+ SLN+S A ++++E ++ Sbjct: 187 ADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244 >gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD] gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6] gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria AMMD] gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria MC40-6] Length = 247 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 25/174 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R + ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L +I T+ + A Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWIIGTS--------------DDASATLYDTKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325] gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325] Length = 271 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 IL + N+G + R + + + R S+ A +SA A I+ + V S Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L +AI L +I TT R+ +I + I+ G E G Sbjct: 183 SLTDAIKKLKEKGFWIAGTTLAERS-------------EEYTKIAKDVPLAIVIGNEGEG 229 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ + + P+ SLN S A ++++E Sbjct: 230 MSKVVTKECDFLYHLPMLGKIQSLNASVAAGIIMYE 265 >gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5948] gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30] gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3] gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9765] gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus COL] gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A5948] gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3] gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30] gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus A9765] gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus MRSA131] gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus T0131] gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus subsp. aureus 21189] Length = 156 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ N G +AR N T L L+ P +K + + ++ Sbjct: 5 IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWG 131 ++ EA ++ N +L + + ++ IFG+E G Sbjct: 60 YHDSI-EAFFEVT----------NGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTG 108 Query: 132 LTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + +E + + P++ SLN+S L+++E + Sbjct: 109 LPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150 >gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis SK135] gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU144] gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU028] Length = 255 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +I T A N +++ + + ++GI+ G E G+ Sbjct: 163 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 208 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + I P+ SLN S A LM++E EK+ Sbjct: 209 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255 >gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 180 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 10/158 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +++L + N+G V R+ F + + L P + ++ A+ ++ V Sbjct: 28 PLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAEDSVNWV-Y 86 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132 + ++A+ L + + E +I+L + + + II G E G+ Sbjct: 87 YERTQDAVEHL--------KAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGV 138 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E + + I P SLN+S ++VWE Sbjct: 139 QQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176 >gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24] gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24] gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24] Length = 261 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 20/168 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + PV++L P+ N G V R F T + D W R + + Sbjct: 114 PRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 168 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L+ A L + + + + FG ER Sbjct: 169 ATVVERLEVA---------------GLPPGPLFALDPEGEDIRGLELPDDALLAFGSERS 213 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GLT E A ++ +++ P+ P S N++ +V + ++ Sbjct: 214 GLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHWSAGGGAPRVP 261 >gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581] gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae] Length = 229 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 10/163 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ ++IL Q N+G + R+ + + L N R +E + S+ Sbjct: 74 LQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNKRASKITEVSLKVSSGGFVG 133 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 I + V ++L AI L + F + + + + + + II G Sbjct: 134 IKFIEV-NSLSTAIEKL---------KKWGFWVYASALDKSSLEIDSVNLNTPAAIIVGS 183 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G++ + ++ I P+ SLN+S A ++++ ++ Sbjct: 184 ESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILFNLLK 226 >gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium NOR5-3] Length = 256 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSA 62 A + + + V++L N+G R+ +T +V P+D A R + Sbjct: 91 ARAVTYNPRALVLVLDGVTDPHNLGACLRSADAAGVT--AVVVPKDNAADITAVVRKVAC 148 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + VRV + +L A +IY T A Sbjct: 149 GATETVPLVRVTNLARSLDALKAAGVWIYGTAG--------------EAGESLYSTELKG 194 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 V ++ G E G+ + ++S P+ SLN+S A + ++E +++ + + Sbjct: 195 AVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVCLFEIRRQRLLAEDAS 254 >gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 227 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP++ +SA A ++ V ++ +A+A Sbjct: 30 PNNVSAVIRTADATGIHKIHAV-----WPNDMRTLSHTSAGARNWVE-VETHDSIGKAVA 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L +++ V + A+ E I + II G E+ G + E L++ Sbjct: 84 EL--------KDQGMQILVTNLSDTAVDFRE-IDYTKPTAIILGSEKIGASEEAKQLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + + N P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVIMYEAQRQRQAAGMYDNQVSNLP 178 >gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946] gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946] Length = 153 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 30/165 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF- 74 ++L P++ +N G +AR +L L+ P W K + + D + Sbjct: 4 VVLYQPEIPQNAGNIARTCA-AAAAELHLIRPLGFRWGDPKLKRA---GLDYWDHLHYVL 59 Query: 75 -SN----LKEAIADL--HFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +++A+A ++A +++ ++ + P + ++FG Sbjct: 60 HDSWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDY---------------LLFG 104 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL E + + ++ P+ SLN++ +V + ++E + Sbjct: 105 PETRGLPKEVLEQFPS-VTIPMPGKVRSLNLAVSVGIGLFEALRQ 148 >gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989] Length = 147 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 19/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + +S A + V + +NL + + Sbjct: 5 QDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVP-VSIVTNLSQTLR 63 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +L ++ T + +E + + ++ G E G++N Sbjct: 64 NLKQEGYWVVGT---------DMKDAREYREGMYDS-----PTVLVIGSEGQGISNLVKK 109 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++++E Sbjct: 110 QCDYMVYLPMVGSITSLNASVAAAILMYEVYNQR 143 >gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 277 Score = 65.5 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL N+G + R + + R + +SA A + RV + Sbjct: 130 IIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPVARVTN 189 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +I T + + K V ++ G E G+ Sbjct: 190 ISQTIEYLKKKNIWIVGT---DLSGEKPFFEADLKGP-----------VALVIGSEGEGM 235 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I++ P+ SLN + A ++++E Sbjct: 236 GRLVSEKCDFIVNIPMQGKISSLNAAVAAAIIMYEIRRQR 275 >gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM 14977] gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM 14977] Length = 214 Score = 65.5 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 17/190 (8%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP + + + + +L++ N+ + R + + VNP G P+ Sbjct: 1 MTPERYRRLRDVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ +RV N++ A+ L + R E A+ E + Sbjct: 60 --FHDTSGGSEKWVYLRVHPNVEAALEHL--------KGRGFTVYAANLSERAVDYRE-V 108 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E+WG++ L++A + P+ + SLN+S A ++++E + + Sbjct: 109 DYTRPSAVLLGAEKWGVSPRAAELADADVIIPMMGMVQSLNVSVAAAVILFEAQCQRLAA 168 Query: 176 SEKNVKEQNT 185 + Sbjct: 169 GLYARPRLDP 178 >gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 254 Score = 65.5 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 16/164 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A ++ + V Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132 + I T + A + I S + IIFG E G+ Sbjct: 162 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGM 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ SLN+S A + ++ + S+ Sbjct: 211 RRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254 >gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii CS-505] Length = 320 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q Q ++ +++ N+G + R L + R + +A A Sbjct: 148 QAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGA-- 205 Query: 67 VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +++ RV NL A+ L +IY T A SV Sbjct: 206 -LENFSVARVV-NLSRALEQLKESGFWIYGTAATGSEPLHSVRF--------------TG 249 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E GL+ + ++S P+ PSLN S A + ++E + ++ Sbjct: 250 STVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNTH 307 >gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct] Length = 250 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + + +A L I K L + + F N Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 250 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + + +A L I K L + + F N Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium 1_1_47] gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella excrementihominis YIT 11859] Length = 268 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I L Q N+G + R+ +T + L +P+ + S K ++ A + S Sbjct: 119 IYLDGVQDPGNVGTILRSALASGVTNIAL-SPQCAYVWSPKVLRAAMGAHFF---CNIIS 174 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ A I + A R L E + +FG E G++ Sbjct: 175 SVELAEIKEKTGAVCLVADARG-----------GKDLYEEKWGKGQTLWVFGSEGLGVSE 223 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + LS+ + P++ SLN++ A + ++E + Sbjct: 224 KALELSDLTLLIPLDSRVESLNVATAASVCLFEQRRRRLSG 264 >gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341] gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341] Length = 271 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 IL + N+G + R + + + R S+ A +SA A I+ + V S Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL +AI L +I TT R+ +I + I+ G E G Sbjct: 183 NLTDAIKKLKEKGFWIAGTTLAERS-------------EDYTKIAKDVPLAIVIGNEGEG 229 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ + + P+ SLN S A ++++E Sbjct: 230 MSKVVTNECDFLYHLPMLGKIQSLNASVAAGIIMYE 265 >gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516] Length = 259 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 14 GPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P ++L+ N+G + R+ F R V + + + + A ++ Sbjct: 109 PPRVVLLDRVSDPHNVGAILRSAEVFGA---RAVIGVQRHSAPETGALAKAASGALERQP 165 Query: 73 V--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +NL A+ +L + + + L + V ++ G Sbjct: 166 YLRVTNLARAMEELKDMGYLVAGLAGEAETDIRPALD-----------GHRDRPVALVLG 214 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL ++ + ++ F SLN+S A + ++ Sbjct: 215 AEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALY 254 >gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC 43970] Length = 230 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ ++ +AIA Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTEMYTRLSSAAGSNSWVQVKTHPHITDAIA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L +++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 85 HL--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRVLSVLPPAEQQRLLF 188 >gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis thaliana] Length = 271 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 34/175 (19%) Query: 17 IILVDPQLGENIGMVARAMWN--FNLT-----------QLRLVNPRDGWPSEKARSSSAN 63 ++LV PQ+ N G +AR L L L+ P + + Sbjct: 84 VVLVSPQIPGNTGCIARTCAASAVGLHLVGVNVDDLICHLFLLQPLGFQVDDARVKRAGG 143 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + + F AT N + L + + Sbjct: 144 R-------KTNDSFYKKRNKDTFKIATITSN-------WVAENNGYNLMQDFSYRSGDYL 189 Query: 124 IFGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMEN 171 +FG E GL E ++ N + P+ + LN+S +V + ++E Sbjct: 190 LFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 244 >gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985] gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM 44985] Length = 154 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 21/167 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L +P++ N G + R +L LV P SE + + V V Sbjct: 3 RVMLFEPRIAGNTGSLIRVSAATGC-ELHLVEPLGFGLSEPKLRRAGLDYHDLAHVVVHP 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+A + I+A T A ++ I ++FG E GL Sbjct: 62 GFDEALAAVPDARIFAFTV--------------AGSTRHDNIAYQAGDVLLFGPEPTGLP 107 Query: 134 NEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E+A + P+ SLN++ A + V+E + Sbjct: 108 -AEVAHHPRVSDRARIPMLAGRRSLNLANAATIAVYEAWRQHGFAGG 153 >gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144] gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU045] Length = 255 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +I T A N +++ + + ++GI+ G E G+ Sbjct: 163 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 208 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + I P+ SLN S A LM++E EK+ Sbjct: 209 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255 >gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4] gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis G4] Length = 247 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + V +NL A+ +L + EA+ L + G V Sbjct: 145 GAADTVPYITV-TNLARALREL---------KDAGVWIIGTADEASGTLYDTKLDG-PVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 194 IVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243 >gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9] Length = 324 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q Q ++ +++ N+G + R L + R + +A A Sbjct: 152 QAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGA-- 209 Query: 67 VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +++ RV NL A+ L +IY T A SV Sbjct: 210 -LENFSVARVV-NLSRALEQLKESGFWIYGTAATGSEPLHSVRF--------------TG 253 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E GL+ + ++S P+ PSLN S A + ++E + ++ Sbjct: 254 STVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNTH 311 >gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans ATCC 10379] Length = 271 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 IL + N+G + R + + + R S+ A +SA A I+ + V S Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL +AI L +I TT R+ +I + I+ G E G Sbjct: 183 NLTDAIKKLKEKGFWIAGTTLAERS-------------EDYTKIAKDVPLAIVIGNEGEG 229 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ + + P+ SLN S A ++++E Sbjct: 230 MSKVVTNECDFLYHLPMLGKIQSLNASVAAGIIMYE 265 >gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC 25196] Length = 279 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 19/161 (11%) Query: 18 ILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 +L++ Q N+G + R+ + + L N S K ++ A + VR+ Sbjct: 133 VLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAHFL---VRIHER 189 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL E R V+A A ++ V +FG E GL++ Sbjct: 190 ANLAEV-------------ARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSD 236 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E + +++ I+ P+ SLN + A + +E + Sbjct: 237 ELLQVAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAG 277 >gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E] gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E] Length = 159 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAHIKKH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++ + + + F L K + G ++FG E G+ Sbjct: 61 KTFE--------VFLESEKPKRLF--ALTTKGGPAHSEVKFELGDY--LMFGPETRGIPM 108 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V + V+E Sbjct: 109 AILDSMPMEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQ 147 >gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 228 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 19/184 (10%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62 Q+ ++ + + + +D N I V R + ++ V W + R +++ Sbjct: 11 QMLDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV-----WSELEMRVSGNTAS 65 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + RV ++++A+ + R + + A+ E I + Sbjct: 66 GSQQWV-KTRVHQSMQQAVDEF--------RGKEMQILATTFSDTAVDFRE-IDYTRPTA 115 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 II G ER G++ IA ++ I P+ + SLN+S A L+++E + ++ Sbjct: 116 IILGNERDGVSPAGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTAAGMYGTRK 175 Query: 183 QNTP 186 + Sbjct: 176 LDDA 179 >gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118] gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118] Length = 161 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 27/176 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+LV+P++ N G + R N L L+ P +K + + V Sbjct: 4 IVLVEPEIPPNTGNIIRLSANTGCA-LHLIEPLGFSMDDKHMRRA--GLDYHEYATVKRH 60 Query: 75 SNLKEAIADLH----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + +A ++A T R R+ +++ AP + ++FG E Sbjct: 61 ASWQAFLAGEQPAPERMFALTTRAGRSVYEAQFAPGDW---------------LVFGSET 105 Query: 130 WGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 GL++ + P+ SLN+S AV + V+E + + + V Sbjct: 106 KGLSDAVRQSFTLAQSLKLPMIEGQRSLNLSNAVAVTVFEAWRQNAFGASRVVPRD 161 >gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b] Length = 231 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 26/178 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WPS + R+ ++ V+ N+ +A++ Sbjct: 30 PHNVSAVIRTADAVGIHEVHAV-----WPSVRMRTMVSASAGSNSWVKVKTHRNITDAVS 84 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L + AT N + +E I + I+ G+E+ G+T E +A Sbjct: 85 HLKTQGMQVLAT-----NLSAKAVDFRE--------IDYTRPTCILMGQEKTGITAEALA 131 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 L++ I P+ + SLN+S A L+++E + + + + E L Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMY--QRTYSLLDEEEQQRLL 187 >gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 153 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 32/164 (19%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76 L P++ N G +AR +L ++ SEKA + D V++ S+ Sbjct: 7 LYRPEIPPNTGNIARLCVALG-AELHIIGQASFDLSEKAARRA--GLDYWDKVKISFHSS 63 Query: 77 LKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E AI T + + +FG E G+ Sbjct: 64 LEEYKAI----LPSGT---------DPYLISVYGKRSYTDVQYKEGDAFLFGNETSGVPT 110 Query: 135 -------EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 EE I+ P+ LN+S +V ++ +E M Sbjct: 111 KMKNSWSEE-----RILKIPMEDSSRCLNLSNSVAVISYEAMRQ 149 >gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae 22.1-21] gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII] gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866] Length = 246 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQHNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246 >gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium HTCC2150] Length = 157 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 17/161 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+LV P++ N G + R L +L L+ P EKA + V ++ Sbjct: 8 IVLVTPEIPWNTGAIGRTCVALGL-ELILIKPLGFSLDEKAVRRA--GTDYWKHVDLTLY 64 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + D H +S+ +E N +IFG E GL Sbjct: 65 DDWQSFL-DAH---------NPAPESMYFFEEHGAQTIYEPEYDPNGYLIFGCESAGLPR 114 Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173 + + + P+ +PL SLN++ +V++ M + Sbjct: 115 AVLDGRDDQVFKLPMLSPLVRSLNLANVATAVVYQAMRKEL 155 >gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum D str. 1873] Length = 263 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 11/159 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + + R+ + +SA A + +V + Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKV-A 174 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL AI ++ A + F G V ++ G E G++ Sbjct: 175 NLNRAIDNI---------KEKGIWVYGADMSGESYCFQTNFKGA-VALVIGSEGRGVSKL 224 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ P+ SLN S A +M++E ++ + Sbjct: 225 TKEKCDVLVKIPMVGNITSLNASVAAGIMMYEVLKQKME 263 >gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis str. MC2 155] Length = 252 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 22/175 (12%) Query: 7 QLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L + GP + V N G + R + L + K +SA Sbjct: 88 SLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAGNSVDPYNSKCLRASAG 147 Query: 64 ADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + I D RV L++A + ATT + + P A + Sbjct: 148 SIFSIPVISDPDEARVVQRLRDA---GLRVLATTV---DGEADLDDPDLEAELT------ 195 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +FG E GL+ + A+++ + P+ SLNI+ A + +++ Sbjct: 196 -EPTAWLFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQSARAQ 249 >gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium praevalens DSM 2228] Length = 246 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + + N G + R + + R + ++A A + V+V S Sbjct: 96 VVILDEIKDPHNFGAIIRTAYAAGADAVVYQERRAVGITPVVLKAAAGAAEHLPLVQV-S 154 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI DL NF + AA + G ++G++ G E GL Sbjct: 155 NINYAIRDL---------KEANFW-IAGADAAADQTHFEADFGGSIGLVIGSEGSGLRRL 204 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P++ SLN S A ++++E Sbjct: 205 VRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241 >gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01] gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-03] gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-07] gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-22] gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-26] gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-32] gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU [Acetobacter pasteurianus IFO 3283-12] Length = 280 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 15/187 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-- 58 + P GPV++L NIG + R+ F L V R+ P E A Sbjct: 106 LPPMPLDEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNA-PEETAVLA 163 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +++ A + VR NL AI L T L+ F G Sbjct: 164 KAASGALETVPMVREV-NLSRAIEQLQKSGCWTVGL----------DAGGTTLDGASFDG 212 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + V ++ G E GL + I + SLN+S A + ++E + + S+ + Sbjct: 213 RRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELVRRGMPSAYQ 272 Query: 179 NVKEQNT 185 + Sbjct: 273 KAAAKKP 279 >gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1] gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 244 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 23/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70 +++L Q N+G R +V P+D + A ++ A + Sbjct: 94 NALILVLDGVQDPHNLGACLRVADAVGAH--AVVAPKDRAVGLNATAIKVASGAADSVPY 151 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V V +NL A+ ++ ++ A + V + G Sbjct: 152 VTV-TNLARALREMQEAGIWVVGAAG--------------EAEKSVYEVDQKGPVAWVLG 196 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + + P+ SLN+S A + ++E Sbjct: 197 AEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARRQR 242 >gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13] Length = 249 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 24/166 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+ + + N+G + R + + R + +SA A + RV Sbjct: 102 IVCDEIEDPHNLGAIIRTAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANL 161 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKEA +IY T A K L V ++ G E + Sbjct: 162 AAALDTLKEA---GVWIYGTDASGDAYDKVDLT---------------GPVALVIGSEGF 203 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ + ++ P+ SLN S A + ++E + + Sbjct: 204 GMGRLVREKCDFLLRLPMCGRITSLNASVAAGIFMYETLRQRAAKA 249 >gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas subvibrioides ATCC 15264] Length = 304 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 11/165 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L + A+G +++L +N+G + R+ F + + + + ++A A Sbjct: 148 EDLGDPAEGIIVMLDQLTDPQNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGAT 207 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + RV +NL A+ R + + + L E + ++ Sbjct: 208 ERLPCARV-TNLSRALE----------RLADLGWRAVGLDGDSEELLENALDHRPTVLVM 256 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ + + P+ F SLN+S A + ++E Sbjct: 257 GSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAAAVALYEATR 301 >gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 227 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ V WP+E +SA A +D V ++ EA+ Sbjct: 30 PNNVSAVIRTADATGLHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIDEAV- 82 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + ++ V I + II G E+ G + LS+ Sbjct: 83 -CQL-------KEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLSDQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + + P Sbjct: 135 DIIVPMVGMVQSLNVSVASAVVLYEAQRQRQAAGMYDNEVSQVP 178 >gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1] Length = 259 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L Q N+GM+ R + + L D + S K S+ + VF Sbjct: 117 VVLYGLQDPGNVGMIIRTADALGINGVILSGSCDLY-SPKVIRSTMGS--------VFRM 167 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I D ++A S + A+ + E F+G + G E GL + Sbjct: 168 AVSVINDTDALFAL-LEENGVESSAAVIDKDAVKVTECSFTG-RQAVFIGNEGNGLPADV 225 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P++ SLN + A +++WE + Sbjct: 226 AHRCTRRVTIPMSGNINSLNAAMAAGILMWELKK 259 >gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565] Length = 243 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 20/156 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V P+ K + ++ + +D V++ ++ A+A+L Sbjct: 30 PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGTAVAEL 86 Query: 85 HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I AT + + I + I+ G+E+ G+ E +AL+ Sbjct: 87 KASGMQILATHLSDSSVD-------------FRAIDYTKPTAILVGQEKHGIGEEALALA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A +++E ++ Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 169 >gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM 15176] Length = 297 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 17/152 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSN---LKEA-I 81 NIG + R+ + L++P P +A S + R+ + EA + Sbjct: 156 NIGAIFRSAAALGM-DAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGL 214 Query: 82 ADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A LH + TTA + V P + + + + I+ G E GL E IA Sbjct: 215 ARLHAMGFTTAAMALDDRALPVDDP---------ALQAAEKLAIVLGTEGDGLAAETIAR 265 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +A + P+ SLN+ A + W+ Sbjct: 266 CDATVMIPMQHGVDSLNVGAAAAVAFWQLRAR 297 >gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270] Length = 254 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF- 74 +IL + + N G + R + +V+ R+ P + + SSA A I +V Sbjct: 107 VILDEIEDPHNFGAIIRTCEAVGVHG-IIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVAN 165 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + ++Y + + N+ I+ G E G+ Sbjct: 166 IADTILKLQKENVWVYGACGEAEKIYTDMDF--------------KGNIAIVIGNEGKGI 211 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A ++V+E + Sbjct: 212 GQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEALRQR 251 >gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae PittEE] gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655] gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA] gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE] gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae RdAW] gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031] gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246 >gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 255 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 V++L + N G + R + + R ++ ++A A + RV Sbjct: 107 PLVVVLDEIADPHNFGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARV 166 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N+ +A+ R + ++ A V + ++ G E G+ Sbjct: 167 -ANVAQALQ----------RLKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMR 215 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN S A ++++E + Sbjct: 216 RWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254 >gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 157 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 29/166 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L +P++ N G + R +T L L++P K + + V V + Sbjct: 5 VVLFEPEIPANTGNIGRTCLATGVT-LHLIHPLGFSTDSKMVRRA--GLDYWEHVDVREY 61 Query: 75 SNLKEAI-----ADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++++ A ++I + T K + +++ +FG+ Sbjct: 62 QSIEDLYETYPDAGFYYIENFGT--------KHYTDFDFSDSDMDQ--------FFVFGK 105 Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ E + + + +N SLN+S ++++E + Sbjct: 106 ESTGIPKELLIGKEDQCLRIHMNDKVRSLNLSNTSAIIIYEVLRQQ 151 >gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217] gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217] Length = 217 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N V R+ F + + ++ G ++ + A SV+ + + K A+A Sbjct: 41 HLHNTSAVMRSCDAFGVQDIHVIEELKGKRIDREIAM--GAQK-WTSVKRYDSTKNALAK 97 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L ++ P A L E + + FG E+ GLT I ++ Sbjct: 98 L--------KSEGYQIVATTPHHTAHKL-EDFKLDKPTALFFGSEKDGLTETVIEAADEY 148 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 I P SLNIS +++ E + Sbjct: 149 IYIPTFGFTQSLNISVCAAILLQELTQR 176 >gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10] Length = 154 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 21/165 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P++ N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPRIAPNTGNAIRTAAATGC-ELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVHASLA 64 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+ + T+ A + ++FG E GL Sbjct: 65 AAWDALTPARVVAFTS---------------HAPASFAELRYRPGDVLMFGPEPTGLDAA 109 Query: 136 EIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +A + + P+ SLN+S A + V+E + Sbjct: 110 TLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGAT 154 >gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis RP62A] Length = 249 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +I T A N +++ + + ++GI+ G E G+ Sbjct: 157 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + I P+ SLN S A LM++E EK+ Sbjct: 203 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249 >gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 315 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 18/168 (10%) Query: 9 QNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 Q + + P +IIL + N G + R + + R + +SA A Sbjct: 160 QENGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAGAVEY 219 Query: 68 IDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV + ++ + ++ T + ++ Sbjct: 220 VPVSRVTNISQTIEYLKKNNVWVVGT--------------DSTGEKAFYESDLKGPIALV 265 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +++ P+ SLN S A ++++E ++ Sbjct: 266 VGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQR 313 >gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 11/173 (6%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 M A GP + +L Q N G + R+ F ++ + K Sbjct: 94 MAVAAIPRAEPRYGPRVLVLDAIQDPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVR 153 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +S RV AIA Y R+R+ ++A A + Sbjct: 154 ASMGGLF-----RVH-----AIAGDAEAYLRAWRDRHPDGVIVATAADASERCDEAPMAG 203 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G+++ L+ ++ P+ SLN + A ++++E + Sbjct: 204 EVAVVIGNEARGVSDAVRQLAQRCVAIPMAGKAESLNAAMAGTILLYEAYRQA 256 >gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 285 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 13/161 (8%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G + R + S KA +SA + + R +N+K+ Sbjct: 129 VETNDPGNAGTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARS-TNVKD 187 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137 + L R +LA V + + +FG E GL E + Sbjct: 188 VLGQL----------RAQGLQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELL 237 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 A ++ +S P+ SLN++ A + ++E + E Sbjct: 238 AEADLRVSIPIRGRAESLNLATAASICMYESSRIQAAARET 278 >gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 6/155 (3%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P NIG V R+ F + + K+ ++ + + +VRV E Sbjct: 125 RPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRV-PAPDEV 183 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + R ++ E Q V ++ G E GL++ Sbjct: 184 MTWVER-----QRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAWRERC 238 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +A++ P+ SLN + A +++E + Sbjct: 239 DAMVGIPMTGAASSLNAATAATAVLYEASRQRTAA 273 >gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus epidermidis VCU121] Length = 248 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKNNGFWVAGTEANNATDYRDL--------------EADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I P+ SLN S A LM++E + +K Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGDK 248 >gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 418 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 18/178 (10%) Query: 13 KGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + PV I L +N+G + R+ L L R + +A A + Sbjct: 242 ESPVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRSAGLTGSVAKVAAGALEHLPVA 301 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + +L+E + I E +NE F G V + G E Sbjct: 302 RVVNLNRSLEELKKSGYTIIGLAG-------------EGDKTINEITFDGPLV-LAIGSE 347 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 GL+ + ++ P+ + SLN S A ++++E + Sbjct: 348 EKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQGWMKGIAGQDPSPKL 405 >gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB056] gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB058] gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB059] gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE] gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii AB0057] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E A+ + + FSG V I+ G E GL Sbjct: 165 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + P++ SLN+S A + ++E Sbjct: 212 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas arsenicoxydans] gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Herminiimonas arsenicoxydans] Length = 247 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L ++ GP ++LV N+G R ++ P+D + A ++ Sbjct: 86 ELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E + TT ++ L E FSG Sbjct: 144 GAADTVPYITVTNLARTLRELKERDILLIGTT-------------DDSEKGLYEADFSG- 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +I G E G+ + ++S P+ SLN+S A + ++E I + Sbjct: 190 PAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQRIATG 246 >gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414] gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414] Length = 261 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 11/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q Q G V+ L Q N+G + R T L L + S K +SA Sbjct: 103 QTQVPFTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWF 162 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + V +LK AT +++ V+A A + + + I+ G Sbjct: 163 RVATA-VSQDLK----------ATIQQSQQAGMQVVATLPTANLTYWDVDWRKPSLILLG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL+ + ++++ + P++ SLN++ A LM++E Sbjct: 212 NEGAGLSPDLASMADKQVKIPLSSGVESLNVAIAAALMMYEAQRQ 256 >gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 315 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ F + + R + A +SA A + + +NL A+ ++ Sbjct: 173 PRNLGAIVRSASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVPVAK-CNNLTSALKEI 231 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 F+ A + L + + I+ G E GL+ Sbjct: 232 KAAGIFVIGLDAGGD-------------MDLPNFELATGPLCIVVGSEGKGLSRLVRENC 278 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +AI+S P++ SLN S AV + ++E + Sbjct: 279 DAIVSIPIDSAMESLNASMAVGISLYEVSRLRAEQA 314 >gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2] Length = 175 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A + + K P V++L D + NIG V R F + + L P + ++ Sbjct: 13 SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 A+ +D + +N + + +L +N + E +I+L+E ++ + Sbjct: 73 GAEFTVDW-KYVNNAVDVVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G+ E I S+ I P SLN+S +++W+ + Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172 >gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia mirabilis ATCC 51599] Length = 247 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 27/161 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC------VIDSVRVFSN 76 N+G R+ + ++ P+D ++ A +++ A V + VR Sbjct: 106 PRNLGACLRSADGAGVD--AVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQ 163 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++A F+ EA L F+G V I+ G E GL Sbjct: 164 LQDA----------------GFRVYGLADEADADLYRTDFAG-PVAIVMGAEDKGLRRLV 206 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +A++S P+ SLN+S A ++++E + + Sbjct: 207 REQCDALVSIPMMGSVSSLNVSVATGVVLYEVLRQRQATQA 247 >gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 253 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L ++ GP ++LV N+G R ++ PRD + A ++ Sbjct: 92 ELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNSTAAKVAS 149 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T A I Sbjct: 150 GAAETVPYITVTNLARTLRELKDAGVWVIGTAG--------------DAQRSLYDIALDG 195 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 196 PVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQR 248 >gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 266 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 15/147 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSN--LKEAIA 82 NIG V R+ + + L + + S + +++ A Sbjct: 126 NIGAVFRSAAAMGIDGILLTDGCSDPLFRRTIRVSMGTVFQIAWRYAGTSDSGYIEKLKA 185 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D A R+ + + +ER+ + + + I+ G E GL + I+ + Sbjct: 186 DGWLTAAMALRD-----------DTVSIADERLKNAEKLAIVLGTEGDGLREDTISACDL 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 + P+ SLN++ A + WE Sbjct: 235 TVKIPMAHGVDSLNVAAAGAVAFWETR 261 >gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp. subtilis str. 168] gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp. subtilis str. SMY] gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis] gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A R +F+++ + ++ G E G+ Sbjct: 161 RTLEEMKERGIWVVGTDASAREDFRNM--------------DGNMPLALVIGSEGKGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925] gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum BKT015925] Length = 160 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%) Query: 11 SAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + I+L +P++ +N G + R N ++L L+ P +K+ + Sbjct: 3 NTPNLNIVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFSIDDKSVKRA--GLDYW 57 Query: 69 DSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ + + + I R + L+ + A ++ + + I+FG Sbjct: 58 PHLKLEIHESFDDMI-----------RKYPDANIYLSTTKGAKYHHDEVNYKEGDFIVFG 106 Query: 127 RERWGLTNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171 RE GL + I I P+ SLN+S V ++ +E + Sbjct: 107 RESSGLP-------DYIRDKYVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQ 153 >gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 230 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 13/172 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI + R + Q+ V P++ +SA A +D V N +A A Sbjct: 30 PNNISAIIRTADAVGIHQVHAVWPKNSKM-RTLGGTSAGARNWVD-VVTHDNTPDAFA-- 85 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + V E A+ E I + I+ G+E+ G++ + +AL++ I Sbjct: 86 ------ALKAKGMQILVTNLSETAVDFRE-IDYTKPTAIVMGQEKTGISQQALALADQDI 138 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 P+ + SLN+S A L+++E + P + E+ L Sbjct: 139 IIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRTRTLIP--QAEVDRIL 188 >gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri DSM 1131] gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri DSM 1131] Length = 167 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+L +P++ N G + R N L L++P +K + +D + Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGF-DLHLIHPLGFTWDDKRLRRAG-----LD----Y 51 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------------GQN 120 S + I H +A L P R+F+ +N Sbjct: 52 SEFAD-IKHHHDYFAF------LKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQEN 104 Query: 121 VGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL + I P+ S+N+S +V ++V+E Sbjct: 105 DYLMFGPETRGLPPYVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157 >gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 179 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 52 WPSEKARSSSANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 WP + R+ ++ A V+ + +A+A L + R + A+ Sbjct: 2 WPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVAHL--------KGRGMQILATHLSDKAV 53 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E I + I+ G+E+ G+T E + L++ I P+ + SLN+S A L+++E Sbjct: 54 DFRE-IDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQ 112 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSF 195 + + P + + L F Sbjct: 113 RQRQNAGMYLRENSMLPEDEQQRLLF 138 >gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Desulforudis audaxviator MP104C] Length = 251 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + +++L Q N+G + R + + + R + A ++A A Sbjct: 90 EELLGTENPLIVVLNAIQDPRNLGAILRTAEAAGVDGAVVPSRRAAPLTPAAAKTAAGAV 149 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV + A T R + V+ V G + ++ Sbjct: 150 EYLPVARVTN------------IALTLREFKQKGLWVVGADPDGPVSYWDADLGGPLALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL A ++++ P++ SLN S A L+++E + Sbjct: 198 IGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAVRQRRAGG 249 >gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970] Length = 178 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A L + KG ++L Q N+G V R+ + + L S K + Sbjct: 20 PDAGALPD--KGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM 77 Query: 63 NADCVIDSVRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++ +L+ +A ++AT R A++ NE + + Sbjct: 78 GAHFL---SEIYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--E 122 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 123 PTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 177 >gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893] Length = 245 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L S K P ++IL N+G R + +V P+D S R + A Sbjct: 89 LSGSEKPPFLLILDGVTDPHNLGACLRTADAVGVQ--AVVVPKDKSASLSPTVRKVACGA 146 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + VRV + +A + + EA L++ F+G V ++ Sbjct: 147 AETVPLVRVTN-----LARFMRTI-----RDDGVWLIGTAGEADSTLHQADFTG-PVALV 195 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E G+ + +I+ P+ SLN+S A + ++E + + Sbjct: 196 MGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEALRQRLA 245 >gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 159 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 27/174 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L ++ P W +K R S + V + Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131 + N ++ + R K + A + + ++FG E G Sbjct: 60 YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107 Query: 132 ---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 L N + +S I P+ S+N+S V ++V+E + Sbjct: 108 MTILDN--LPMSQKI-RVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158 >gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus pseudintermedius ED99] Length = 156 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L P++ N G +AR + T L L+ P +K + V + + Sbjct: 5 VVLYQPEIPANTGNIARTCAATD-THLHLIRPLGFSTDDKMLRRA--GLDYWKYVSITYY 61 Query: 75 SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N++ + + T ++N+ + QN IFG+E GL Sbjct: 62 DNIESFFEQTEGQYFLLTKFGSKNHT------------SQDFSDVDQNYYFIFGKETTGL 109 Query: 133 TNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P+N +LN+S ++V+E + Sbjct: 110 PDWVKDKYDNTALRIPMNENVRALNLSNTAAILVYEALRQQ 150 >gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9211] Length = 162 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 31/163 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 + L +P++ +N G + R F + L L+ P K + D + Sbjct: 10 VALFEPRIPQNTGNIGRTCAAFQIP-LHLIKPLGFSLDSKLLKRA--GLDYWDFIDLTTH 66 Query: 75 SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N I+D + + ++ I LN+ F ++V ++FGRE G Sbjct: 67 ENFSAFKIHISD-KRLIGFSKKD-------------GIPLNKITFKPEDV-LLFGREDTG 111 Query: 132 LTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166 L + + ++S P+ + SLN+S A + + Sbjct: 112 LPEDIREACDLMVSIPMPGKADSDGSNGVRSLNLSSACAIASY 154 >gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640] gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06] Length = 261 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG ++L Q N+G V R+ + + L S K + A + Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL---SE 167 Query: 73 VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +L+ +A ++AT R A++ NE + + +FG E Sbjct: 168 IYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--EPTAWVFGNEG 215 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++ + P++ SLN++ A + ++E M Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter radioresistens SK82] gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164] Length = 251 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 21/158 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + Q +V PRD + AR +A + ++V + L + Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQ 165 Query: 80 AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + T +L E A+ L + +G V I+ G E GL A Sbjct: 166 MKEHSQVRVIGT----------MLD--EQALPLQQCDLTGPIV-IVMGAEDTGLRPITQA 212 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + P+ SLN+S A + ++E S Sbjct: 213 QCDHKVYIPMAGNLQSLNVSVATGMALYEACRQRNAKS 250 >gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 15/172 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADC 66 QN V++L N+G + R+ F L +V P E + ++ A Sbjct: 153 QNRDHAVVMVLDQVTDPHNVGAILRSAAAFGA--LAVVVTDRHSPEETGTLAKSASGALE 210 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V+ VRV + ++ A+ L TA A + + ++ G Sbjct: 211 VMPLVRVTNMVR-ALEQLKEAGFWTAGLAG----------EATQTLAQAKLSGKIALVMG 259 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E GL + ++ P++ L SLN+S A + ++E + ++ Sbjct: 260 AEGEGLRRLTREHCDHLVKLPMSDLVESLNVSNAAAISLYELARDQDLAVPP 311 >gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289] gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289] Length = 205 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 23/194 (11%) Query: 4 YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P +++L D + N+G V R+ F + + L P+ + ++ Sbjct: 13 SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYAT-----TARNRNNFKSVLA--PKEAAIVL 111 + + R F +EA+ +LH F+Y+ + + ++ +L P+E Sbjct: 73 GGEDSVAW-RYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDC 131 Query: 112 NE----------RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 ++ G E G+ + +S+ + P SLN+S Sbjct: 132 PAADTSHPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTA 191 Query: 162 LLMVWECMENSIVS 175 +++WE ++ Sbjct: 192 GIVIWEFARRLLLE 205 >gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis SH0165] Length = 244 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + L A ++IL N+G R + +V P+D + AR Sbjct: 83 SDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARK 140 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A + +RV + ++E +I T A ++ Sbjct: 141 VACGAAETVPLIRVTNLARTMRELQERNIWIVGTAG--------------EATESLYQVK 186 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ ++ G E G+ + ++S P+ SLN+S A + ++E + ++ Sbjct: 187 LTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKLL 244 >gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216] Length = 243 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 28/168 (16%) Query: 15 PVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 P+I+L V N G +AR+ L + + +A SSA A I Sbjct: 94 PLIVLFDGVTDVR-----NFGAIARSAECAGAHGLIVPLKNAAPVNSEAIRSSAGALTAI 148 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV S LK A+ + + T ++R K ++ Sbjct: 149 PVCRVGSIRNTLKALQAEGYQVVGATEKSRKLLYDADFRK--------------PTALVM 194 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ E + L + ++ P+ SLN+S A ++++E + I Sbjct: 195 GAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQRI 242 >gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL N1-067] Length = 251 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212] Length = 274 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 24/184 (13%) Query: 4 YAPQLQNS---AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P LQ + K + +L++ Q N+G + R+ N + + L S K Sbjct: 104 SKPALQGNTHTRKEVLSVLLETIQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLR 163 Query: 60 SSANADCVIDSVRVFSN--LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ A + ++ N LK+ + AT+ +A L E Sbjct: 164 AAMGAHFFLH---IYENSNLKQIAQQFPGTVIATSI-------------QATKNLFEISL 207 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +G +FG E GL+ E I ++ I+ + SLN++ A + +E + SS Sbjct: 208 AG-PTAFLFGNEGAGLSAEMIQAAHLNIAITMPGKTESLNVAAAAAICFFEKVRQDKYSS 266 Query: 177 EKNV 180 + Sbjct: 267 PSST 270 >gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii DSM 20548] Length = 234 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 IIL + N+G + R+ +F + + R + +SA A I++++V Sbjct: 87 IILDKIEDPHNLGAIIRSAESFGFDAVIIPERRSASVTSTVYKTSAGA---INNIKVVRV 143 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +NL I DL +IY ++ L VG++ G E Sbjct: 144 TNLTRTIKDLKDKGFWIYGLAGEAHSDISH--------ADLR------GKVGLVVGNEGE 189 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G++ + +I+ P+ SLN S A + ++E + Sbjct: 190 GISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230 >gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis 29755] Length = 244 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + L A ++IL N+G R + +V P+D + AR Sbjct: 83 SDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARK 140 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A + +RV + ++E +I T A ++ Sbjct: 141 VACGAAETVPLIRVTNLARTMRELQERNIWIVGTAG--------------EATESLYQVK 186 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ ++ G E G+ + ++S P+ SLN+S A + ++E + ++ Sbjct: 187 LTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKLL 244 >gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 271 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + V++LV +N+G + R F + L KA S A I Sbjct: 117 PPRALVVVLVGIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALKIPF 176 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 A TT R + L+P+ + + + G E Sbjct: 177 ASFTDT-----AGFT----TTLARRGFEQFALSPR--GKTDIRDAQRSERLALYLGTEGE 225 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL ++ +A + + + F SLN++ A + + +I+ Sbjct: 226 GLPDDLLASLHN-VRITMAEGFDSLNVAAASAIALHHFSARAILGK 270 >gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus mulieris 28-1] gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 269 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 19/167 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L +IL + Q N+G + R + + S K +S + Sbjct: 108 PPLHELRGRVALILPETQDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSV 167 Query: 66 CVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + D ++ S L E ++ A TA + AP + + F+ + Sbjct: 168 FHVPTPRFSDLAQLVSTLHE----SQWLVAGTA--------LDAPLAWGFEVASQ-FADK 214 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V + G E GL + L + +++ P+ S N+SQA L +W Sbjct: 215 KVAWMMGNEAHGLNAAQRELCDVLMAIPMFGQAESFNVSQAATLALW 261 >gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 231 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 73/180 (40%), Gaps = 30/180 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R + Q+ V WP+ + R+ +A ++ + +V+ + + + Sbjct: 30 PHNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNNWV-NVKTHHTISDTV 83 Query: 82 ADLHF----IYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + AT +R +F+ V + ++ G+E+ G+T+E Sbjct: 84 NHLKTQGMQVLATHLSSRAVDFREVDYTR--------------PTCVLLGQEKTGMTDEA 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 +AL++ I P+ + SLN+S A L+++E + + + + E L Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGLYH--RDRSMLDEEEQQRLL 187 >gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 272 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 16/171 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68 + ++L Q N+G + R+ Q L++P + K ++ A + Sbjct: 112 PDMQADTVVLDGVQDPGNVGSILRSAAAAGFRQ-ILLSPDCAQAWAPKTLRAAMGAHFQL 170 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D + +A ++L A V +FG E Sbjct: 171 D----------VLEHCDLPAFLSAYRGQPVATLL----GASTSLYGADLAGPVAWVFGSE 216 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G+ AL+ + P+ SLN++ A + ++E + + + Sbjct: 217 GLGVRPAVAALTRLQVRIPMPGPSESLNVAAAAAVCLFETVRRRQTEASPS 267 >gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF] gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900] gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii] gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU] gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB307-0294] gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606] gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2] gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715] gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013150] gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6013113] gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter baumannii 6014059] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E A+ + + FSG V I+ G E GL Sbjct: 165 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + P++ SLN+S A + ++E Sbjct: 212 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246 >gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 246 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + S Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246 >gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 169 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +I +P + N G R T L LV P EK + + +V + + Sbjct: 19 VIFDNPVIPPNTGNAIRMCAGSGAT-LHLVEPLGFTLDEKHLRRAGLDYHDLANVIIHPD 77 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L +A L ++A T + F I + ++FG E GL Sbjct: 78 LDACLAALTGSRVFAFTTQASAYFH--------------EIAYERGDALLFGTEPTGLPE 123 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ P S+N+S + + +E Sbjct: 124 SHAHHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQ 162 >gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto BEST195] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A R +++++ + ++ G E G+ Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299 str. F0039] Length = 267 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P + +A I+ +VD NIG + R+ + + L + +A Sbjct: 110 PSVESICKTASRIAIVDGVVDTT---NIGAIFRSAAALGIDGILLTKSSCDPFNRRAVGV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 S + +I + +N+ E ++ F A R+N + + A + Sbjct: 167 SMGSIFLIPWTWLDNNISE-VSQYGFKTVAMA--LRHNSIDINDARLKAE---------K 214 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E GL I ++ ++ P+ SLN++ A + WE +N+ Sbjct: 215 KLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAASAIAFWELCKNT 267 >gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1] gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae BGR1] Length = 250 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 25/180 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T + A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTA--------------DDAPASLYETKLD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 V ++ G E G+ + +++ P+ SLN+S A + ++E + V++ Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQRRVAAAA 249 >gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317 str. F0108] Length = 267 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--AIADL 84 NIG + R+ + + L + +A S + ++ L E A+ Sbjct: 133 NIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPWTWSEQPLAELSALGFR 192 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A T +N S+ ++ + + I+ G E GL ++ IA ++ ++ Sbjct: 193 TAAMALT----HNSISLDD---------AKLKAEPRLAIVMGTEGDGLPHQVIAQADYVV 239 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + WE Sbjct: 240 RIPMAHGVDSLNVAAASAVAFWELR 264 >gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 248 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 15/172 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P + +S K V++L N+G + R L ++ L + + KA + Sbjct: 92 PDKVECPSSLKPFVLVLDGVAEPGNMGTILRTALAVGLERVILTSGTVDPYNAKAVRAGM 151 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + +L+ D F + +P+ I L + F Sbjct: 152 GAQFRLEFI-YVESLESLSQDF---------PEAKFW-LTSPRAD-ISLYNKGFDLSGSF 199 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++FG E G+ + + ++ P+ SLN++QA L ++E + +++ Sbjct: 200 LVFGEEGDGIKDFSVG---ERVTIPMPGDTESLNVAQAATLFLFEGVRRNLL 248 >gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101] Length = 556 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ L L R + +A A + RV + +L+ Sbjct: 318 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 377 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + EA + L+E G V I+ G E GL+ + Sbjct: 378 EEGYRVIGLAG-------------EAGVALSEADLDGPLV-IVTGSEGSGLSMLTRKHCD 423 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 ++ P+ PSLN S A ++++E + Sbjct: 424 QLVRIPLRGATPSLNASVATAMVLYEVARRGWMKQITGSAPAP 466 >gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272] gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272] Length = 156 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 22/156 (14%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKE 79 +P++ N G R ++L LV+P + E + A D + V V ++L Sbjct: 8 EPRIAGNTGSAIRLAAATG-SELHLVDP--LFDLEDTKLRRAGLDYHDLAVVTVHADLDA 64 Query: 80 AIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A L ++A TA+ + V ++FG E GL E + Sbjct: 65 AWDHLLPARVFAFTAQAERVYTDVRYR--------------PGDVLLFGPEPTGLPGEVM 110 Query: 138 A--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ P S+N++ + V+E Sbjct: 111 DDPRVTDRLRLPMLPGRRSMNLANCASVAVYEAWRQ 146 >gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568] Length = 231 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 18/174 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ V WP+ + R+ SA +V+ + +A+ Sbjct: 30 PHNVSAIIRTADAVGVHQVHAV-----WPTPRMRTLVSSAAGSNSWVNVKTHPTIVDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ A+ E + + ++ G+E+ G+T E + L++ Sbjct: 84 -------THLKDQGMQILATNLSARAVDFRE-VDYTRPTCVLLGQEKTGITEEALRLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + +++ + E L Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGLY--RREHSMLDQEEQQRLL 187 >gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120] Length = 335 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 26/170 (15%) Query: 15 PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--- 70 PVI++ D N+G + R L + R + +A A +++ Sbjct: 174 PVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA---LENFPV 230 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV NL A+ DL +IY T A +V + ++ G Sbjct: 231 ARVV-NLGRALEDLKEAGFWIYGTAAGGSEPLHTVSFR--------------GPIVLVIG 275 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E GL+ + ++S P+ PSLN S A + ++E +++ Sbjct: 276 SEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 325 >gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 244 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + + N+G + R + + + R + +SA A + SV +NL Sbjct: 97 LDELEDPHNLGAIIRTADAVGIHGVVIPRRRAVGITPAVVKASAGAVEYV-SVCRVTNLA 155 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + I + V+ AA + + ++ G E G++ Sbjct: 156 QTIE----------YLKEKGCWVVGADAAAPQNLWQADLQGPLALVIGSEGKGISRLVRE 205 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++ +E + Sbjct: 206 KCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQR 239 >gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 IIL + N+G + R+ +F + + R S +SA A I+++ + Sbjct: 92 IILDQIEDPHNLGAIIRSAESFGFDGVIIPERRSASVSPIVYKTSAGA---INNINIIMV 148 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N AI ++ ++Y + +++ V +I G E Sbjct: 149 KNTNRAIEEIKEAGFWVYGLAG---EASSPI-----------DQVDLKGKVCLIVGNEGK 194 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ + +I+ P+ SLN S A + ++E + Sbjct: 195 GLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQ 235 >gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299] gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299] Length = 247 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 32/187 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73 ++LV PQ+ N G +AR + L LV P ++ + +S VRV Sbjct: 72 AVVLVTPQIPGNTGTIARTCAAARVP-LHLVGPLGFDLTDAQLKRA--GLDYWNSVCVRV 128 Query: 74 FSNLK-------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +A+ + A + + A R ++FG Sbjct: 129 HDDWDAFHAYWRDALGAPGRLVAFSK---------FGARPHAEEGAYRSGDW----LLFG 175 Query: 127 RERWGLTNEEIALS---NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 E GL I P++ SLN++ + + V+E + V Sbjct: 176 AETTGLPGAAHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQI---DGPPVHG 232 Query: 183 QNTPATK 189 + PAT+ Sbjct: 233 TDEPATR 239 >gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes HCC23] gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes L99] Length = 251 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 226 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + Q +V PRD + AR +A + ++V +NL +A Sbjct: 85 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 141 Query: 83 DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + T +L E A+ + + FSG V I+ G E GL Sbjct: 142 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 188 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + P++ SLN+S A + ++E Sbjct: 189 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 223 >gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A R +++++ + ++ G E G+ Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1] Length = 394 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 14/164 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67 Q + K V+ L D N+G + R+ +F + L LVN S A ++ A+ V Sbjct: 242 QANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 300 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +AI+ F A + + V L + + + ++ G+ Sbjct: 301 -----------QAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAQLP-EKMVLVLGQ 348 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ER GL++ + +S SLN+S A +++ E Sbjct: 349 EREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQ 392 >gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314] gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314] Length = 272 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 NS V + V+ + N G + R + K +SA + + Sbjct: 114 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 173 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGR 127 R N+ + + L R+ +LA V + + +FG Sbjct: 174 VARNV-NIDDVLGQL----------RSQGLQILATAADGEVDLDDAGELLSRPTAWLFGN 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E GL E +A ++ + P+ SLN++ A + ++E + Sbjct: 223 EAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADEA 272 >gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens YS-314] Length = 282 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 NS V + V+ + N G + R + K +SA + + Sbjct: 124 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 183 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGR 127 R N+ + + L R+ +LA V + + +FG Sbjct: 184 VARNV-NIDDVLGQL----------RSQGLQILATAADGEVDLDDAGELLSRPTAWLFGN 232 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E GL E +A ++ + P+ SLN++ A + ++E + Sbjct: 233 EAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADEA 282 >gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae C87] Length = 249 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 ILILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LSKTIDELKENGFWVAGTEASNATDYRDL--------------QADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E + E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRDETGE 247 >gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus EPS] gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus EPS] Length = 153 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 35/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P++ N G V R N T L LV P ++ + + V + Sbjct: 4 IVLVHPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRA--GLDYHEYAEVKRH 60 Query: 77 LK-EAIADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +A+ D A TT R P + ++FG E Sbjct: 61 ADWQALIDAESAAADRMFALTTRGTRAVHDVRFQPGDW---------------LVFGSET 105 Query: 130 WGLTN------EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E + P+ SLN+S AV + V+E Sbjct: 106 SGLPPAVRDGFAEPQR----LRLPMREGQRSLNLSNAVAVTVFEAWRQ 149 >gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2] Length = 243 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 21/155 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+L D Q N+G + R +F + L +EK S+ A I + Sbjct: 102 VIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIP--VIRG 159 Query: 76 NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ + L + I AT+ N + + + P A ++FG E G Sbjct: 160 DVQAMLMSLKQKGNRILATSLHNASALREIAVPDAFA--------------LVFGNEGKG 205 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E + L++ + ++ F SLN++ A + ++ Sbjct: 206 VSEEVLRLADTHVFIEMH-TFESLNVAVAAGICMY 239 >gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium pseudotuberculosis FRC41] gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 285 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 21/165 (12%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR------V 73 V+ N G + R + KA SSA + I VR V Sbjct: 135 VETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRV 194 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +LK A I ATTA+ ++ A VL+ + G E GL Sbjct: 195 WDSLK---ARGLKILATTAQGE------ISLDNAGDVLS------HPTAWLMGNEAHGLE 239 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ + P+ SLN++ A + ++E + + Sbjct: 240 ESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 284 >gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii C-113] Length = 284 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 32/165 (19%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G R + + + R + AR ++ A + VRV Sbjct: 130 QDPHNLGACLRTAEAAGVHGVVVPKDRAAGLTAVARKVASGAAERVPLVRVT-------- 181 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRERWG 131 N + + A +E + L + G +G++ G E G Sbjct: 182 -------------NLARVMRALRERGLWLVGAVVGGTHATLYETDLQGPLGLVLGAEDRG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L + ++ P+ SLN+S A + ++E ++ Sbjct: 229 LRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLAP 273 >gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis C231] Length = 289 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 21/165 (12%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR------V 73 V+ N G + R + KA SSA + I VR V Sbjct: 139 VETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRV 198 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +LK A I ATTA+ ++ A VL+ + G E GL Sbjct: 199 WDSLK---ARGLKILATTAQGE------ISLDNAGDVLS------HPTAWLMGNEAHGLE 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ + P+ SLN++ A + ++E + + Sbjct: 244 ESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 288 >gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB] Length = 244 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P +++L N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASGA 145 Query: 65 DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV + L+ + + + ++ T A + Sbjct: 146 AENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVFQSKMTGP 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 24/177 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S + P ++IL N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLASLENPFLLILDGVTDPHNLGACMRSADAAGVHAVIVPKDRSAALNATAKKVASGA 145 Query: 65 DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 I + R L+EA +I T A + Sbjct: 146 AEHIPLIRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLHQSRMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + V Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245 >gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703] Length = 230 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 33/208 (15%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP + N+ + + + ++ N+ V R + Q+ V WP+ Sbjct: 1 MTPQRYARIRDMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTN 55 Query: 56 KARSS---SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAA 108 + ++ +A ++ + V+ ++ +A++ L + AT N S + ++ Sbjct: 56 RMKTLVSTAAGSNSWV-QVKTHRSIHDAVSHLKSQGMQVLAT-----NLSASAVDFRD-- 107 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + I+ G+E+ G++ E +AL++ I P+ + SLN+S A L+++E Sbjct: 108 ------VDYTRPTCILLGQEKTGISAEALALADQDIIIPMIGMVQSLNVSVASALILYEA 161 Query: 169 MENSIVSSEKNVKEQNTPATKGELLSFL 196 ++ + + +P + E L Sbjct: 162 QRQRQLAGMY--QREISPLDEEEQQRLL 187 >gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074] gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 261 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 38/180 (21%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L+ + + PV++L P+ N G V R F + + P D W R + Sbjct: 111 ALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGASGVVTTGPLDPWHPTVVRGGA----- 165 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN------ 120 LHF A + P+ A L G + Sbjct: 166 ----------------GLHFATAVA--------PLEVPELPAGPLFALDPEGADIRGLTL 201 Query: 121 ---VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + FG ER GLT E A ++ +++ P+ P S N++ +V + ++ S + Sbjct: 202 PDDALLAFGSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLFHWASASGAAPA 261 >gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC 35110] gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC 35110] Length = 179 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 9/145 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R + ++ + P + + A +D V L EA+ADL Sbjct: 38 NVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGATETVDWEYVADPL-EALADL-- 94 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 +++ + L E A +E + ++ G E G+ +E + + + Sbjct: 95 ------KDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGIDDEVLQECDFALEI 148 Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171 P SLN++ + + ++E + Sbjct: 149 PQYGTKHSLNVAVSAGIAIFEAVRQ 173 >gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH] Length = 245 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 24/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB] Length = 272 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 65/178 (36%), Gaps = 26/178 (14%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A+GP+++L + N+G + R F + L + K ++ + Sbjct: 115 MAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFH 174 Query: 68 I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + D +V +KE + ++ R G+ Sbjct: 175 VPFLFGADLSKVLPRVKENF----HVVGSSVRTGTLPH----------------ACGEKT 214 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E GL + L++ P + SL++ QA ++++EC+ ++ + + Sbjct: 215 ALLLGSESHGLPETLLKLTDEQWHIPRRGVGESLSLPQAAAILMYECVRSAPSRAARP 272 >gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 21/187 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + V +L + N G V R + L + + K+ +S + Sbjct: 114 EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSH 173 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV 121 + +++A+ L R+ VLA A + G Sbjct: 174 FHLPVAVGVP-VEQAVQGL----------RDAGVRVLAADGAGEQDLDDELDAGTMGGPT 222 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 IFG E WGL E AL++A++ P++ SLN++ A + ++ + + Sbjct: 223 AWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY------ASARAQRAG 276 Query: 182 EQNTPAT 188 + PA+ Sbjct: 277 AKGAPAS 283 >gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 250 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P+L+ + ILV Q NIG + R L ++ L+N + KA + Sbjct: 91 EKPKLEQLSFDDDFILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + + +A L I K L + + F N Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++FG E G+ + + P SLN++QA + ++E + + Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249 >gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides salanitronis DSM 18170] Length = 246 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 34/179 (18%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L K P+ IL V N G +AR + + + + + A Sbjct: 88 PFLFEQGKNPLFILLDGITDVR-----NFGAIARTCECAGVDAIIIPSKNSVSVNADAVK 142 Query: 60 SSANADCVIDSVR---VFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 +SA A + R + S LKE + I AT E Sbjct: 143 TSAGALLSLPVCRENNILSTIRFLKE--SGFKIIAAT---------------EKGDYDYT 185 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G+ E +AL + I P+ SLN+S A +++++ +E Sbjct: 186 KADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKAIEQR 244 >gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 270 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 20/177 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P A L + + V++L D N+G + R+ L++PR P ++ S Sbjct: 110 PAATVLAGARR--VVVLEDLVDHTNVGAIFRSAAALGW-DAVLLSPRCADPLYRRSIKVS 166 Query: 62 ANADCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + RV +++ E +AD F A T + + + Sbjct: 167 MGAVFRLPWARVDDWASTPELLADAGFTAVAMTLGEGAVP-------------IDEVDTD 213 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ G E GLT + S + P+ SLN++ +V + W+ S+ + Sbjct: 214 RPLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAASVAVACWQLRGPSLRT 270 >gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 4b H7858] gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017] Length = 251 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri L37603] Length = 248 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VIIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E ++ ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKSNGFWVAGTEANNATDYRDL--------------EADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I P+ SLN S A LM++E + K Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGNK 248 >gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262] gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e] gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes Clip81459] gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S] gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161] gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL J2-064] gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL J1-208] gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL J2-003] gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL J1-175] gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e] gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262] gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes str. 1/2a F6854] gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578] gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923] gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220] gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. Scott A] Length = 251 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2] Length = 243 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 46/195 (23%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS----SANADCVIDSVRVFSNLKEA 80 N+ V R + ++ V W E+ + + + +L A Sbjct: 30 PHNVSAVVRTCDAIGIHRVHTV-----W--EEKYQFRGDTAMGSQQWVRQTN-HDSLGNA 81 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I + + V + A+ E + + IIFG+ER+G T+E IA++ Sbjct: 82 IG--------ALKQQGMQVLVTHLSDTAVGFRE-VDYTKPTAIIFGQERYGATDEAIAMA 132 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD--Y 198 + I P+ + SLN+S A L+++E EL D + Sbjct: 133 DQDIIIPMAGMVQSLNVSVAAALVLYEAQRQR------------------ELAGMYDVEH 174 Query: 199 L-----EISLEERGY 208 L + L ERGY Sbjct: 175 LPEEECQKLLFERGY 189 >gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163] gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617] Length = 245 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 24/177 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLASLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASGA 145 Query: 65 DCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 I VRV + L+EA +I T A + Sbjct: 146 AEHIPLVRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLYQSKMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + V Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245 >gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430] gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430] Length = 153 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 17/160 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+L P++ +N G + R L L+ P ++K + + + V Sbjct: 5 IVLHQPRIPQNTGNIGRLC----FASNTILHLIYPLGFSLTQKELKRA--GMDYWEHLEV 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + AD + + + N L K + +G + FGRE GL+ Sbjct: 59 YE-----YADTESFFKSYFIDSNLPHFFLTTKTKIPYYKAPMQAGAY--LHFGREDAGLS 111 Query: 134 NEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E ++ + + P+ SLN++ +V ++++E + + Sbjct: 112 QEILSANQEYCYTIPMQNNARSLNLATSVGIVLYEGIRQA 151 >gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216] Length = 228 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 20/156 (12%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IL + +N + R F + + + R + D ID R Sbjct: 44 ILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKFNPNVNIVR--GTDKWIDLHR-HRT 100 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 EAIADL I ATT + + ++FG E G+ Sbjct: 101 TAEAIADLKGRGYRIVATTPHREDKTPETFD------------VAASPFVLVFGTEHAGI 148 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++E +A ++ + P+ + SLN+S + ++++ Sbjct: 149 SDEIVAAADEFLRIPMCGMVESLNVSASAAILIYML 184 >gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G +AR + + + P G S A +SA A I RV +++ AI L Sbjct: 109 NFGAIARTAECAGVDAIII--PERGSVSVGGDAIKTSAGALHRIPVCRV-TSIPGAIRSL 165 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++A E A L + +GI+ G E G + + + +++ I+ Sbjct: 166 Q----------EYGIRIVAASEKAADLYTDVPMKLPLGIVMGAEDVGPSPDTLRMADGIV 215 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P SLN+S A ++++E + + S Sbjct: 216 AIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQS 247 >gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 243 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 22/162 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74 V+ L + Q N+G + RA +FN V + ++K SS A ++ V + Sbjct: 98 VVFLDNVQDPGNVGTIIRAAKSFNFDT---VVSNVNFYNDKIVRSSQGALFTVNLVNYAY 154 Query: 75 SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL + IY T+ + +N+ F + + IIFG E Sbjct: 155 DNLHSVLKKYKQNGFKIYCTSLSKNSVP------------INKISFENEKIVIIFGNEGS 202 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + I +++ ++ P+ F SLN++ ++++E + + Sbjct: 203 GASETSIKIADKLVYVPI--DFESLNVAVCAGIVLYEANKKA 242 >gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 02_1987] Length = 259 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 22/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFN--LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + V+ + N G V R + R+ P ++ V V Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAVADHRV----GDHPLGGKCLRASTGSIFAIPVVVAP 167 Query: 76 NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ AIADL + AT E A+ +R+ + + +FG E G Sbjct: 168 DVGAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHG 215 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E AL++ + P++ SLN++ A + ++E Sbjct: 216 LSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 255 >gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A R +++++ + ++ G E G+ Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 330 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 8/154 (5%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82 N G + R L + LV+ + K S+A + + +R + A Sbjct: 177 PGNAGTIIRLADAAGLDGVILVDDCVDETNPKVVRSTAGSLFHLPIIRMGIDDFFAFAQE 236 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRERWGLTNEEI 137 + A A + V + G ++FG E GL + I Sbjct: 237 HGATVVAADAYGTDQV-PVKELPAFLDEWRRTGQDQEKAGSAPTIVLFGNEARGLDDPLI 295 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ SLN++ + ++++ Sbjct: 296 NRCQEAVRIPLYGKAESLNVAMSAAVILYSLAMA 329 >gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 278 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +++L + Q N+G + R+ F + L PR P + + + Sbjct: 125 DIGNLILVLAEVQDPTNLGSILRSAAAFGCRGVVL-GPRCADPFARRVIRVSMGSALTIP 183 Query: 71 VRVFSNLK---EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V SNL E+IA+ + + AT +R A L + ++ G Sbjct: 184 ITVSSNLACDLESIAEKGYQLTATVLSDR------------AKKLGDLQLDVPR-ALLLG 230 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E GL E IA+ ++ P+ SLN++ A ++++ + + Sbjct: 231 SEGNGLAPEWIAMCREHVTIPMAWGTDSLNVAIAAAVLLYHFSTSRL 277 >gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380] Length = 230 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ +++ +AI Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTEMYTRLSSAAGSNSWVQVKTHAHITDAI- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ + A+ E I I+ G+E+ G++ E +AL++ Sbjct: 84 -------TYLKSQGMQILATHLSDKAVDFRE-IDYTLPTCILMGQEKTGISEEALALADK 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSALPKDEQQRLLF 188 >gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13] gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13] Length = 154 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +P++ N G + R N N +L LV P SEK + I ++ Sbjct: 4 IVLYEPEIPPNTGNIIRLCSNSNC-KLHLVKPLGFELSEKTLRRA--GLDYIKHELFVIY 60 Query: 75 SNLKEAI---ADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 N + + +++ + + + +N + SV P + +FG E Sbjct: 61 ENYSDFLSKNKNINL-FGISTKGKNYYHSVSFKPDDF---------------FMFGPETR 104 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + N ++ P+ S+N++ V ++++E Sbjct: 105 GLPDAIRNQIEPNHLLRVPMAENSRSINLANTVSIILYEAWRQ 147 >gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC 29909] Length = 230 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ +++ +AIA Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHTHISDAIA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L +++N + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 85 HL--------KSQNMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + + P + + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAKSVLPEDEQQRLLF 188 >gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland 1988] gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28] Length = 221 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 72 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 131 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 132 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 177 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 178 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 214 >gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01] Length = 257 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 27/173 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++Q V++L+ + N+G + R+ + L LV S + +S Sbjct: 102 EVQLPQDPLVLVLLGLEKPGNLGAILRSADGAGV-DLVLVAEGVDLYSPQVIRNSTGVVF 160 Query: 67 VI-------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + + F L+E L + AT P+ + E G Sbjct: 161 SLPVYPVAEEEAARF--LEE--KGLFLVAAT-------------PRGEKVYWEENYQRG- 202 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V + G E GL+ +A + + P+ + SLN+S + L+++E + Sbjct: 203 -VAFLLGTEDEGLSEAWLARAGVRVRIPMRGVADSLNVSVSAALLLYEALRQR 254 >gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15] Length = 245 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 24/174 (13%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 QL S K P +++L N+G R + Q +V P+D + AR + Sbjct: 88 QLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV-QAVIV-PKDKSASLTPVARKVACG 145 Query: 64 ADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + VRV +NL + L ++ T EA L + F G Sbjct: 146 AAETVPFVRV-TNLARFLRSLQDQGVWLIGTAG-------------EADATLYQADFKG- 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V ++ G E G+ + +I+ P+ SLN+S A + ++E + + Sbjct: 191 PVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQRL 244 >gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 253 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + ++GP ++LV N+G R L ++ P+D + R + Sbjct: 88 ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A VI V V + L++ ++ T EA + L ++ +G Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + II G E G+ + ++ P+ SLN+S A + ++E + V + Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249 >gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae] Length = 156 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + V + SN Sbjct: 6 IVFDNPVIPNNTGNAIRTSAVTGAS-LHLIEPLGFNFEDKNLKRAGLDYHDLADVHIHSN 64 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L ++A ++ A I ++FG E GL Sbjct: 65 FDACMNALPHSRVFAFSS--------------HATTWYTDIEYKDGDVLLFGTEPTGLPT 110 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + + P+ P S+N+S + ++E + Sbjct: 111 EHLEHPRITQQVRIPMLPARRSMNLSNCASIAIYEAWRQLGFEGAQ 156 >gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 251 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B] gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B] Length = 333 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 14/149 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + +V G S A ++ ++ +R L +A+ Sbjct: 197 PHNLGAIMRSCAHFGVAG--IVMTEAGLLQSGAAARTAEGGMEHVEGIR-CDRLTDALQL 253 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R+ S++ R V ++FG E G++ + ++ Sbjct: 254 C----------RDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRADIG 303 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P L SLN+S A L++ E Sbjct: 304 VQIPGTGLVESLNVSVAASLILGEWYRQQ 332 >gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153] gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis OX99.30304] Length = 261 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165 Query: 71 VRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ +L+ +A ++AT R A++ NE + + +FG Sbjct: 166 SEIYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--EPTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 25/174 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 + GP +LV Q N+G R+ + ++ PRD + S+ Sbjct: 89 ACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEAAGVHG--VIAPRDRAAGLTPVVHKVSS 146 Query: 63 NADCVIDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + RV +NL +A L R+R + A + A + Sbjct: 147 GA-----AARVPYFQVTNLARTLAGL--------RDRGIWLVGAAGEAGAAHWEADLT-- 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL + ++ P+ SLN+S A +++WE + Sbjct: 192 GPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEALRQR 245 >gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L + + N+G + R + + R + +S A I V+V + Sbjct: 101 VLDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E ++ T A R +++++ + ++ G E G+ Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRTM--------------DGTMPLALVIGSEGKGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEIYR 242 >gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter antarcticus 238] Length = 263 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 17/164 (10%) Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65 + + P ++L+D N+G + R+ F Q + R P A + +++ A Sbjct: 107 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFG-AQAVIAMNRHAAPETGALAKTASGAM 165 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122 +RV NL +AI +L VL A E++ G+ + Sbjct: 166 ERQPYLRV-RNLADAIVELQ----------AMGYLVLGLDGEAEQTIEQVVEGKRDRAIA 214 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL ++ +A++ F SLN+S A + ++ Sbjct: 215 LVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNVSNAAAVALY 258 >gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804] gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii] Length = 245 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ ++ +GP ++LV N+G R + +V PRD + + + Sbjct: 87 EVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVH--AVVAPRDRAVGLNSTVQRVAC 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+ ++ T + A + + Q Sbjct: 145 GAADTVPYITVTNLARTLRGLKERGVWVVGT--------------DDQAAGSLHTVDARQ 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 191 PMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQR 243 >gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato str. DC3000] gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 23/179 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + ++GP ++LV N+G R L ++ P+D + R + Sbjct: 88 ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A VI V V + L++ ++ T EA + L ++ +G Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + II G E G+ + ++ P+ SLN+S A + ++E + + Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250 >gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea biformata HTCC2501] Length = 178 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 16/167 (9%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K P + IL + + N+G V R F + ++ L P + R ++ A Sbjct: 16 AFKEAPKTPAVLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGAT 75 Query: 66 CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122 + L+ + + H +A L E A+ L E R G+ Sbjct: 76 ESVAWEYAGDTLQVLDRLETTHECWA------------LEQAEGAVSLGEFRPEPGKRYA 123 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + G E G++ I ++ P SLNIS A +++W+ Sbjct: 124 FVLGHEVKGVSQAVIDRCRGVVEIPQLGTKHSLNISVAAGVLLWDFY 170 >gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4] gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4] Length = 279 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 12/158 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R + + + LV + + ++ + + V + Sbjct: 133 VALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGS---LFHVPIIKT 189 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 K+A D + V+ V + V ++ G E+ GL Sbjct: 190 AKDAFLDF---------AKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASM 240 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + +I P SLN++ A + ++E N + Sbjct: 241 TRVCKTLIRIPQVGQADSLNLAVATGITLYEIRRNHLE 278 >gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 17/172 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q+ + V +L + N G V R + L + + KA +S + Sbjct: 128 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 187 Query: 66 CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +++A+A + + A A +R+ + ++ G Sbjct: 188 FHLPVAIGVP-VEQAVAGLRGTGVRVLAADGAGDRDLDDEL-----------DKGTMGGP 235 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 236 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQ 287 >gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica W22703] Length = 219 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R + Q+ WP+ + +A ++ + V+ S++ +AI Sbjct: 19 PHNVSAIIRTADAVGIHQIH-----AIWPTPAMYTRLSSAAGSNSWV-QVKTHSHITDAI 72 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T +++ + A+ E I + I+ G+E+ G++ E +A+++ Sbjct: 73 --------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMAD 123 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + ++ E L Sbjct: 124 KDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL--SEDEQQRLL 176 >gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I V+V + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E ++ T A R +++S+ + ++ G E G+ Sbjct: 161 RTLDEMKERGIWVVGTDASAREDYRSM--------------DGKMPLALVIGSEGRGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103] gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103] Length = 259 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ +V P+D + A+ ++ Sbjct: 101 PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG-AHAVIV-PKDRSAPLNATAKKVAS 158 Query: 63 NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV + L+ + + + ++ T A + Sbjct: 159 GAAENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVYQSKMT 203 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 204 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 257 >gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G +AR + + + P G S A +SA A I RV +++ AI L Sbjct: 109 NFGAIARTAECAGVDAIII--PERGSISVGGDAIKTSAGALHRIPVCRV-TSIPGAIRSL 165 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++A E A L + +GI+ G E G + + + +++ I+ Sbjct: 166 Q----------EYGIRIVAASEKAADLYTDVPMKLPLGIVMGAEDVGPSPDTLRMADGIV 215 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P SLN+S A ++++E + + S Sbjct: 216 AIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQS 247 >gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V PRD + R + A V+ ++V + Sbjct: 104 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDKATGLTPIVRKVACGAAEVVPLIQVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+E +I T A + + ++ G E G+ Sbjct: 162 LARSLRELQERGVWIVGTAG--------------EADHDVYQAKLTGPMALVMGAEGKGM 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247 >gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium NaphS2] Length = 278 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 11/148 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R F L + R + S+ A + RV +NL A+ +L Sbjct: 133 SGNLGALMRTAAFFGAHGLIIPKDRSAGITPTVLKRSSGAHTKLPVARV-TNLSRALNEL 191 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 +RN + A E A + + ++ G ER GL+ + ++ Sbjct: 192 ---------SRNELWIMGAAGE-AEESIYDFDWRRPLVLVLGNERKGLSPSARKQCHGLV 241 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 S P SLNIS A +++ E Sbjct: 242 SIPSPGNTDSLNISVAGGVILSEICRQR 269 >gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus halophilus Nc4] Length = 249 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 37/180 (20%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 L ++ K P ++IL Q N+G R + ++ P+D + R ++ Sbjct: 88 DLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG--VIAPKDRAVGLTAAVRKVAS 145 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--- 119 A + VRV N + + +E + L + G Sbjct: 146 GAAERVPFVRVT---------------------NLARLMRKLRERGLWLVGTVVKGGGSL 184 Query: 120 -------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +G++ G E GL + ++ P+ SLN+S A + ++E Sbjct: 185 YNTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 244 >gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM 12042] gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM 12042] Length = 169 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72 ++L +P++ +N G + R N +L L+ P E+ S + ++ Sbjct: 4 VVLYEPEIPQNTGNIMRTCVAANC---RLHLIEPLGFSLDEQKIRRS--GMDYREKLQMS 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWG 131 V+ + A A+N + L + + + +++ ++FGRE G Sbjct: 59 VYPDWA----------AFCAQNPDGEFYFLTRYGKQPPASFDYTRTEKDIYLVFGRESTG 108 Query: 132 LT----NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ SLN+S V + V+E + Sbjct: 109 IPKAILRDHLDRCARL---PMVADARSLNLSNCVAICVYEVLRQ 149 >gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL S4-120] Length = 251 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13] Length = 260 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P + GP+++L + N G + R+ F T +V + K ++A + Sbjct: 105 PMDLATTTGPLLVLAEVSDPGNAGTLMRSAEAFGATG-VVVAGGVDPYNPKLVRAAAGSS 163 Query: 66 CVIDSVRVFSN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + V + L+EA +AT R L+P E S Sbjct: 164 FRVPFA-VVDDPMAALRILEEAGYGC---WATVPRGG------LSPAEVP--------SD 205 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 V II G E GL++E +A +S P SLN++ A + + + Sbjct: 206 GPVAIILGNEPHGLSDEVVAACVGTVSVPTVGGVESLNVAIAGSIALHDL 255 >gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato T1] Length = 253 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 23/177 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + ++GP ++LV N+G R L ++ P+D + R + Sbjct: 88 ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A VI V V + L++ ++ T EA + L ++ +G Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + II G E G+ + ++ P+ SLN+S A + ++E + V + Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248 >gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12] gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 269 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ VII +VD NIG + R+ + + L+ + +A S A ++ Sbjct: 119 ARRIVIIDGVVDTT---NIGAIFRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVP 175 Query: 70 SVRVFSNLKE-AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + L + A + A T + + VL + + I+ G Sbjct: 176 WTWLDGPLSDLARWGFRTVAMALTDNSISIDDPVLTTE-------------PKLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL++E IA ++ ++ P++ SLN++ A + W+ Sbjct: 223 EGDGLSHERIAEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264 >gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 251 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 208 RLVREKCDFLIHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans Nor1] Length = 270 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 11/169 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ+S + +++L + Q N+G V R + L S K ++ + Sbjct: 111 DLQSSDRELIVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLF 170 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V + + E + A +LA + L + V I+FG Sbjct: 171 HLP---VITGVAE-----QEVAAF---LERQGIRLLATALDSSSLYHDVDLRSPVAIVFG 219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G++ + ++ + P+ SLN++ A ++++E V+ Sbjct: 220 NEGAGVSKVILEKADERLYIPLYGRAESLNVAVAAAVILYEARRQRRVA 268 >gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC 700345] Length = 228 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 73/184 (39%), Gaps = 19/184 (10%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62 Q+ ++ + + + +D N I V R + ++ V W + R +++ Sbjct: 11 QMLDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV-----WSELEMRVSGNTAS 65 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + RV ++ +A+ R+++ + A+ I + Sbjct: 66 GSQQWV-KTRVHQSMAQAVEAF--------RDQDMQILATTFSDTAVDFRA-IDYTKPTV 115 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +I G ER G++ E IA ++ I P+ + SLN+S A L+++E + ++ Sbjct: 116 VIMGNERDGVSPEGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTEAGMYGTRK 175 Query: 183 QNTP 186 + Sbjct: 176 LDDA 179 >gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL S4-171] Length = 190 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 41 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 100 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 101 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 146 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 147 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 183 >gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC 49989] Length = 280 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + Q N+G + R T L L N S+K +SA Sbjct: 134 LCEIQDPRNLGAIMRTAAATG-TGLLLSNDSCDVFSDKVIRTSAGLFD------------ 180 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-----RIFSGQNVGIIFGRERWGLT 133 + F+ AT+ + + + A LNE + +N I+ G E GL Sbjct: 181 ----RVGFVQATS--REDFLNRLKDRRVFAAALNEGMIYTNLNGMKNTCILMGNEGRGLY 234 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ ++ + P+ SLN+ A L ++E +++ + Sbjct: 235 EDDFNIATDKVFIPMENDVDSLNVGVAASLFMFELNRKELINEGR 279 >gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 169 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 40/172 (23%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----------GQNVG 122 +L +A + P + + + S + Sbjct: 60 YHDDLPAFLATI-------------------PDMKKLYIVSKFASRDYTDVDYTGTGDHY 100 Query: 123 IIFGRERWGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172 +FG+E GL + + P N +LN+S + ++++E + Sbjct: 101 FLFGKETTGLPEAFMRKYPENAVRIPQNDDNIRALNLSNSAAIVIYEALRQQ 152 >gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 255 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 11/166 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + PY + + V++L N+G + R + L +EK S Sbjct: 93 IYPYIKGALENLQKNVVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRS 152 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + + + ++ +E IA L + +K V+ E V ++ + Sbjct: 153 SMGS--IFNMNIIYMEEEELIALL---------KKEEYKIVVTALEKNSVSYTQMKLAEK 201 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+FG E G++ + + + I P+ + SLN++ A ++++ Sbjct: 202 NAIVFGSEGDGVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILY 247 >gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM 3776] Length = 285 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 35/175 (20%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L K +I+ + EN+G + R F T L L S + S Sbjct: 131 ELTAFQKPLLIVCPNCDNPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMG--- 187 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNERI---- 115 I+ T R + L + +L+E Sbjct: 188 -------------------NIFGLTIRESRHLDHDLQRLKTEFGFETMGAILSESAVSLK 228 Query: 116 --FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ G E GLT E + N +++ P+ P SLN++ A + +++ Sbjct: 229 NVQRPHRLALLLGNEAEGLTTEWMDHCNHLVTIPMPPDVDSLNVAVAAGIFLYQL 283 >gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 247 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 23/177 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L ++ +GP ++LV N+G R ++ P+D + A ++ Sbjct: 86 ELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E + TT ++ L E FSG Sbjct: 144 GAADTVPYITVTNLARTLRELKERDIMLIGTT-------------DDSEKGLYEADFSG- 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G+ + ++ P+ SLN+S A + ++E I + Sbjct: 190 PAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQRIATG 246 >gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa ATCC 25296] gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa ATCC 25296] Length = 155 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 29/159 (18%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLK-- 78 P++ N G R +L LV P G+ + A A D + V V L+ Sbjct: 9 PEIPGNTGNAIRLAAITG-AELHLVKPL-GFNFDDAHLRRAGLDYHDLAVVTVHETLEDA 66 Query: 79 -EAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA+A + F + TTA +FG E GL E Sbjct: 67 WEALAPERVFAFTTTASTSYADIEYR----------------PGDVFMFGPESVGLP-AE 109 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ P+ P SLN++ + + ++E Sbjct: 110 VQQ-DPHVTERVKIPMKPGRRSLNLANSASIAIFEAWRQ 147 >gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae R3021] gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 189 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 32 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 89 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + DL ++ T A + Sbjct: 90 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 134 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + S Sbjct: 135 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 189 >gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 160 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 26/172 (15%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + N+ K I+L++P++ +N G + R N +L +V ++ + Sbjct: 1 MPNTEKLFRIVLIEPEIPQNTGNIGRTCVGTNC-ELHIVGKMGFEINDTNLKRA--GLDY 57 Query: 68 IDSVRVF--SNLKE---AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + ++ + D I+ TT R F+ + Sbjct: 58 WPHLTWYRHETFEDWWKHVEDPSRIWLFTTKTQRTYFEPQYQSGDW-------------- 103 Query: 122 GIIFGRERWGLTNEEIA-LSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171 +FG+E GL E + ++ P+ SLN++ +V + +E + Sbjct: 104 -FVFGKETKGLDPEFLQKHPQQTVTIPMIGEGARSLNLATSVAIAAYEGLRQ 154 >gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 22/175 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + + R + +SA A + RV Sbjct: 100 ILVLDELEDPHNLGALLRTADAAGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARV-G 158 Query: 76 NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL +A+ A ++ A R+ F + L SG V ++ G E Sbjct: 159 NLVQALKQLKKAGC-WVTGAEAGGRDVFSADL--------------SGPRV-LVVGGEDK 202 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GL + I+S P+ SLN S A ++++E I N ++ ++ Sbjct: 203 GLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEVRRQRISGHNDNSRQSSS 257 >gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 159 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L ++ P W +K R S + V + Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + N ++ + R K + A + + ++FG E G+ Sbjct: 60 YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + I P+ S+N+S V ++V+E + Sbjct: 108 MAILDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158 >gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 345 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + L N+ + ++ ++ N+G + R+ +F L LV+ S A ++ Sbjct: 186 PVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAHFGAKGL-LVDDASLLESGAAVRTA 244 Query: 62 -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+ V +AI+ F A + + V L + + Sbjct: 245 EGGAEHV-----------QAISGESFAEGLNAFRKAGYTIVTTSSHKGTPLAQAELPAKT 293 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G+ER GL++ + +S SLN+S A +++ E Sbjct: 294 V-LVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEWWRQ 343 >gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661] Length = 232 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP + R+ SA V+ SN+ +A+ Sbjct: 30 PHNVAAVIRTADAVGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHSNIADAVG 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T + + L++ Sbjct: 85 HL--------KGQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQQALDLADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I P+ + SLN+S A L+++E + +E ++ + L F Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRRESTLEYSEQQRLLF 188 >gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 260 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 13/153 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEA 80 Q N+G + R+ F + L + K +S A + V + +A Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAV---RIPVIETGAMPQA 175 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 IA L R + A ++ + + V ++ G E GLT+E IA Sbjct: 176 IALL--------REKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAAC 227 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N+ + P+ SLN A +++W E S+ Sbjct: 228 NSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260 >gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola ACS-139-V-Col8] gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola ACS-139-V-Col8] Length = 175 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 27/166 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I L P + N G ++R + L L++P +K + +V + Sbjct: 5 IALYQPLMPANTGNISRTCAA---SNAPLHLIHPLGFSTDDKMLKRA--GLDYWHNVEII 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----IIFGRE 128 + + A L ++ + + + A + +N +FG+E Sbjct: 60 EHESFE---AFLDYV---------GQRPMYLISKFAPRIYTEADLARNEADEQFFLFGKE 107 Query: 129 RWGLTNE-EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL E + + P+N SLN+S V ++++E + Sbjct: 108 TTGLPLEFMLEHKQDCLRIPMNDEHVRSLNLSNTVNIVLFEALRQQ 153 >gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103] gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103] gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355] Length = 377 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 14/150 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAI 81 N+G + R+ +F + L LVN S A ++ A+ V +AI Sbjct: 239 SNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV-----------QAI 286 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + F A + + V L++ + + V ++ G+ER GL++ + Sbjct: 287 SGATFNEGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMV-LVLGQEREGLSDSTFQQGD 345 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 346 MSLSIGGTGNVESLNVSVATGVLLAEWWRQ 375 >gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2143] Length = 247 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 ++ + P ++IL N+G R + ++ P+D + R + Sbjct: 88 EMLDGLDHPPLLLILDGVTDPHNLGACLRTADAAGVD--AVIAPKDSSAPLNATVRKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A V+ ++V +NL + D+ +I T A + Sbjct: 146 GAAEVVPYIQV-TNLARTMKDIQGRGIWITGTAG--------------EAEQSVYQANLT 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V ++ G E G+ + +I+ P+ SLN+S A + ++E + + + Sbjct: 191 GPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEAVRQRVSA 247 >gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 3_1_53] Length = 169 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 13/166 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-N 76 +L +P++ +N G + R N T+L L+ P E+ + +D V+ Sbjct: 5 VLYEPEIPQNTGNMMRTCMATN-TRLHLIKPLGFSLDEQHLKRAG-----MDYVKELDYT 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + E D T+ +N+ + + A + ++ I G+E G+ E Sbjct: 59 VYENWEDF-----TSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIPKEL 113 Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++ + + P+ SLN+S ++++E + NV+ Sbjct: 114 LSRQLDRCMRLPMVANARSLNLSNCAAIILYEALRQLDYPGLSNVE 159 >gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii B565] Length = 249 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ +V PRD + R + A V+ ++V + Sbjct: 104 VLDGVTDPHNLGACLRSADAAG-AHAVIV-PRDKATGLTPIVRKVACGAAEVVPLIQVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E +I T A + + ++ G E G+ Sbjct: 162 LARTLRELQERGVWIVGTAG--------------EADHDLYQAKLTGPMALVMGAEGKGM 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247 >gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18] Length = 191 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 13/180 (7%) Query: 6 PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + + K P+I++ V N+G V R+ F + + L P+ + ++ Sbjct: 15 EEFKEADKLPLIVVLDDVRSLH--NVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + +D R F ++AI +LH F+Y+ + L + + + Sbjct: 73 GGEDSVDW-RYFERTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNHQHPTPNTQ 131 Query: 119 QNV---GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V I+ G E G+ + +S+ + P SLN+S +++WE ++ Sbjct: 132 HPVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQLLIK 191 >gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter italicus Ab9] Length = 249 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A + +V SN+ Sbjct: 102 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKV-SNI 160 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I +L +I T E I V ++ G E G++ Sbjct: 161 NNTIRNLKERGLWIIGT--------------DVNGGKSFEEIDYDFPVALVIGNEGKGVS 206 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ P+ SLN S A +++++ Sbjct: 207 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 241 >gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp. 'sapolanicus'] Length = 246 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 IIL + + N G + R + + + R + ++A A I V+V S Sbjct: 96 TIILDEIKDPHNFGAIIRTAYAAGADAVVYQDRRAVDITPVVLKAAAGAAEHIPLVKV-S 154 Query: 76 NLK---EAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 N+ +A+ D HF + A A +++F E FSG + ++ G E Sbjct: 155 NINYAIKALKDAHFWVVGADAAGEQSHF--------------EADFSG-STALVIGSEGS 199 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + ++ P+ SLN S A ++++E Sbjct: 200 GLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQ 240 >gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485] gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM 9485] Length = 257 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 18/167 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68 G +IL + Q N+G + R+ + L + P P S K ++ A ++ Sbjct: 106 PPRPGLRLILDEIQDPGNVGTLLRSAAAAGVG-LVICAPGTADPFSPKVARAAMGAHFIV 164 Query: 69 D-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + ++ +A A +A + + Q +I G Sbjct: 165 PLRLLPWDDIATELAGYTVYAADSA----AQQPYYT-----------VDWRQPAALIIGN 209 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G++ L+++ I+ P+ SLN A ++++E + + Sbjct: 210 EAHGVSTAARTLAHSTITIPMAGPIESLNAGVAGSIILFEALRQQTI 256 >gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia psychrerythraea 34H] Length = 154 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L PQ+ N G + R N +L L+ P +K + +++ +N Sbjct: 4 VVLFQPQIPPNTGNIIRLCANSGF-RLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRHAN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + K VLA I ++FG E GL EE Sbjct: 63 FNAFLE------------KEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLP-EE 109 Query: 137 IALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P+ S+N+S A ++V++ Sbjct: 110 V-RAQIPDENKLRIPMLKESRSMNLSNATAVIVYDAWRQ 147 >gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 253 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 23/177 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + ++GP ++LV N+G R L ++ P+D + R + Sbjct: 88 ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A VI V V + L++ ++ T EA + L ++ +G Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + II G E G+ + ++ P+ SLN+S A + ++E + V + Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248 >gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937] gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937] Length = 362 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + L LVN S A ++ A+ V L +A+A Sbjct: 225 PHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHV--KAISADGLVDALAQ 281 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I T++ V P I+ G+E GL++ Sbjct: 282 FRAAGYTIVTTSSHKGTTLSKVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 327 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLNIS A +++ E Sbjct: 328 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 359 >gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus sp. WH 8109] Length = 515 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++ L N+G V R+ + + R + A +A A + R Sbjct: 279 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 338 Query: 73 VFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + +L E + D + + A V + + ++ G E Sbjct: 339 VVNLNRSL-EKLKDAGYRVVGLAA--------------EGDVTLTDVDLSGPMVLVTGSE 383 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GL+ + ++ P+ + PSLN S A L V+E + + Sbjct: 384 DQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 440 >gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 169 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 IVLYEPLIPANTGNIARTCA--GTDTVLDLIEPLGFETDDKHLKRA--GLDYWDQVKINY 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL + T +R + + + A + + + +FG+E GL Sbjct: 61 HKNLDAFLE--------TVPDRKHLYLITKFAKQAYSDQDVTDTSVDHYFMFGKETTGLP 112 Query: 134 ------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 NE + + P++ +LN+S L+++E + Sbjct: 113 ETFMRENE-----DQCLRIPMSDHIRALNLSNCAALVIFEALRQQ 152 >gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478] Length = 154 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 19/163 (11%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V P + N G R +L LV P SE + + SV V ++L Sbjct: 6 FVSPCIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLT 64 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A L ++A TA +A ++ + +V ++FG E GL Sbjct: 65 AAWDALLPARVFAFTA-------------QATTPFSDVSYRAGDV-LMFGPEPTGLDAAT 110 Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +A ++ + P+ SLN+S A + V+E S Sbjct: 111 LADAHITEQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHDYSGA 153 >gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H] Length = 282 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 13/160 (8%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDS 70 KGPV++L NIG + R+ F L LV R+ A + +++ A V+ Sbjct: 133 RKGPVLVLDQVTDPRNIGAILRSAAAFGAAAL-LVQDRNAPQESGAMAKAASGALDVVP- 190 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +++ A A NF V+ L+ + F+G+ V ++ G E Sbjct: 191 ---------ILREVNLSRALQALQAENFW-VVGLDAGGTRLDGKSFAGRRVALVLGAEGA 240 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 GL + I S + SLN+S A + ++E + Sbjct: 241 GLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280 >gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 219 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + L+ + P +K + A + + R ++ E I Sbjct: 44 HNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNIAM--GAQQWVTTPR-YNTTTECID--- 97 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T R ++ +K + L + + + FG E+ GL+ E + ++ + Sbjct: 98 -----TLR-KDGYKIIATSPHTDSYLLDDFKIDDKIALFFGTEKSGLSQEVLDKADGYVK 151 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS + +++ Sbjct: 152 IPMVGFSESLNISVSAAILL 171 >gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976] gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976] Length = 159 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P++ +N G + R N +L ++ P W +K R S + V + Sbjct: 4 IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFEWDDKKLRRS---GLDYHEFVDIQK 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + N ++ + R K + A + + ++FG E G+ Sbjct: 60 YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107 Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + I P+ S+N+S V ++V+E + Sbjct: 108 MAILDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158 >gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae] Length = 167 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + A N L K + G ++FG E GL Sbjct: 63 YFAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDY--LMFGPETRGLPAYV 120 Query: 137 IALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + I P+ S+N+S +V ++V+E Sbjct: 121 L---DGLPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157 >gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 220 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + +L ++ R G +K + A +D + F + I+ Sbjct: 44 HNTSAVMRSCEVFGIQELNIIEQRFGKRIDKEI--ALGAQKWVD-INRFDTVDGCIS--- 97 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R++ P E L + + + FG E+ GL+ E + ++ + Sbjct: 98 -----SLRDKGYQIIATTPHEN-DCLIQDFDISKPSALFFGTEKDGLSPEILEKADGFLK 151 Query: 146 FPVNPLFPSLNISQAVLLM 164 P+ SLNIS + ++ Sbjct: 152 IPMVGFTESLNISVSAAII 170 >gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL F6-596] Length = 251 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDANGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A ++++E Sbjct: 208 RLVREKCDFLIHLPMRGKVTSLNASVAASILLYEVYR 244 >gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021] Length = 322 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 Q++A+ P+I+ L N+G +AR+ F + + + R + A +SA Sbjct: 166 QDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGTLAH 225 Query: 68 I---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + + + L+E F+ E+ + + + + ++ Sbjct: 226 LTVARAANLTATLREYREAGLFVIGLDG-------------ESTVDIGDANLLDGPLVVV 272 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + ++ P+N SLN A + ++E + Sbjct: 273 VGSEGKGLSRLVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHR 320 >gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 17/172 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q+ + V +L + N G V R + L + + KA +S + Sbjct: 118 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 177 Query: 66 CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +++A+A + + A A +R+ + ++ G Sbjct: 178 FHLPVAIGVP-VEQAVAGLRGTGVRVLAADGAGDRDLDDEL-----------DKGTMGGP 225 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 226 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQ 277 >gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri L37603] gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri L37603] Length = 156 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRERWG 131 E I F +T + +L + + + N IFGRE G Sbjct: 59 -TYHENIE--SFFEST-----DGEYYLLT--KFGKQTYSDFDFSDTQNNHYFIFGRETTG 108 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + + + P++ SLN+S L+++E + Sbjct: 109 LPDWVKDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150 >gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi] Length = 254 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A ++ + V Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++ + + ++E + IIFG E G+ Sbjct: 162 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 211 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ SLN+S A + ++ + S+ Sbjct: 212 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254 >gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila simulans] Length = 236 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A ++ + V Sbjct: 86 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++ + + ++E + IIFG E G+ Sbjct: 144 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 193 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ SLN+S A + ++ + S+ Sbjct: 194 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 236 >gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Drosophila ananassae] Length = 236 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A ++ + V Sbjct: 86 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++ + + ++E + IIFG E G+ Sbjct: 144 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 193 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ SLN+S A + ++ + S+ Sbjct: 194 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 236 >gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102] Length = 263 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 15/163 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L Q N G + R+ + Q+ N S K + A ++ +FS Sbjct: 114 CVVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSPKVLRAGMGAHFLLS---IFS 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTN 134 ++ +A + A + + Q+ +FG E G++ Sbjct: 171 RVE-----------LSAWMEKYQHPIWATALGGRNIGLYEMNLSQSCAWVFGNEGSGVSE 219 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + A + P+ SLN++ A + ++E M I + Sbjct: 220 RIKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262 >gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus flavefaciens FD-1] Length = 254 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +N P II+ + + N+G + R + + R + +SA A Sbjct: 98 RNKGTKPFIIICDEIEDPHNLGAIIRTAETSGADGIIIPKRRSASLNATVFKTSAGAANY 157 Query: 68 IDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV SNL I + +IY T A ++ + + Sbjct: 158 VPVARV-SNLASCIDMLKENGVWIYGTDASGTEYTQTDFT---------------GSCAL 201 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + G E +G++ + +I P+ SLN S A + ++E + +S Sbjct: 202 VIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMYEILRQRSNNS 254 >gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 252 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 27/180 (15%) Query: 2 TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PSEK 56 P +++ AK P+++L N+G +AR F + + + P + P E Sbjct: 83 APLPREVRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIII--PAHAFAALPGES 140 Query: 57 ARSSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110 A + V R + L EA + A T R + Sbjct: 141 AHRIAEGGLEHLTLWRVPTLARFCAELHEA--GYEVVGAAT-RGGALT-----------L 186 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G ++ G E GL E +++ P + SLN+S A ++++ ++ Sbjct: 187 PALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 246 >gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 230 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ + R + Q+ WP+ + +A ++ + V+ S++ +AI Sbjct: 30 PHNVSAIIRTADAVGIHQIH-----AIWPTPAMYTRLSSAAGSNSWV-QVKTHSHITDAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T +++ + A+ E I + I+ G+E+ G++ E +A+++ Sbjct: 84 --------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 I P+ + SLN+S A L+++E + + ++ E L Sbjct: 135 KDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL--SEDEQQRLL 187 >gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8] gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei VT8] Length = 245 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 24/174 (13%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 QL S K P +++L N+G R + Q +V P+D + AR + Sbjct: 88 QLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV-QAVIV-PKDKSASLTPVARKVACG 145 Query: 64 ADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + VRV +NL + +L ++ T EA L + F G Sbjct: 146 AAETVPFVRV-TNLARFLRELKDQGVWLIGTAG-------------EADATLYQADFKG- 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V ++ G E G+ + +I+ P+ SLN+S A + ++E + + Sbjct: 191 PVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQRL 244 >gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus epidermidis VCU121] Length = 156 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ N G +AR N T L L+ P +K + + V + Sbjct: 5 IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132 E D+ + +T N + L K ++ FS N IFGRE GL Sbjct: 59 -TYHE---DIESFFEST-----NGEYYLLTKFGKQTYSDFDFSDTNNNHYFIFGRETTGL 109 Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P++ SLN+S L+++E + Sbjct: 110 PDWVKDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150 >gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 158 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GMDYLEYA----S 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I HFI+ + + +L A +I +N ++FGRE G+ N Sbjct: 58 LERHIDWPHFIH----TMKQFNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPNYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 N + P+ P SLN++ +V + E + Sbjct: 114 YEAVNETLKIPMQPYARSLNLAMSVAITTGEALRQ 148 >gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 23/171 (13%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVID 69 + P +++ + N+G + R + + P+ G + +++ A + Sbjct: 102 EPPFLVICDEINDPHNLGAIIRTAECCGAHGVII--PKRGAVGLTAAVDKAASGALEYMP 159 Query: 70 SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV + ++E + ++Y T E FSG +I G Sbjct: 160 VARVSNLAATVEELKKEGVWVYGT--------------DMDGQPFYETDFSGG-AAVIIG 204 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G++ + ++S P+ SLN S A ++++E + I + Sbjct: 205 SEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGIVLYEAAKTRIRTGG 255 >gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi] Length = 366 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + L LVN S A ++ A+ V L +A+A Sbjct: 229 PHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHV--KAISADGLVDALAQ 285 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I T++ V P I+ G+E GL++ Sbjct: 286 FRAAGYTIVTTSSHKGTTLSKVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 331 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLNIS A +++ E Sbjct: 332 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 363 >gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942] Length = 258 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 12/154 (7%) Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V+ Q N+G + R L L K +SA + + ++L Sbjct: 114 VETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIA-IATDLG 172 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + + + + P+ + + + ++ G E GL+ + A Sbjct: 173 QTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--RPTVLLLGNEGAGLSPDLAA 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++++ ++ P SLN++ A L+++E Sbjct: 223 IADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 256 >gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71] Length = 206 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+ + R + ++ V WP + R+ ++ A V+ + +A+A Sbjct: 7 PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + + A+ E I + I+ G+E+ G+T E +AL++ Sbjct: 62 HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 I + + SLN+S A L+++E + + P + + L F Sbjct: 113 DIIILMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165 >gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537] Length = 170 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + + V++ Sbjct: 5 IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWEHVQLVK 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + + T + ++ V + + + +FG+E GL Sbjct: 61 HPSLPDFLD--------TLKPTDHLYLVSKFANQDYSQPDYQATDGDHYFLFGKETTGLP 112 Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E+ + I P + SLN+S V ++++E + Sbjct: 113 --EVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153 >gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 152 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ N G VAR T L L+ P +K + V + Sbjct: 3 IVLFQPEIPPNTGNVARLCAAT-RTSLHLIEPLGFSVDDKHVRRA--GLDYWPHVDLTVW 59 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ ++E + + + T+AR + +N ++FG E Sbjct: 60 PGWYAFMREVGSRVRLVM-TSARGGTAVQDFRF--------------NKNDALVFGPESR 104 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + S ++ P+ SLN+S A +++++ + S + + Sbjct: 105 GLPAHMLDGSGHVVRIPIWGEVRSLNMSTAAGIVLYQALAASGELAGR 152 >gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 296 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 28/175 (16%) Query: 5 APQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 AP LQ + P I++V+ + N+G + R+ + + +P + +S Sbjct: 141 APDLQ---RAPFILVVEAIEKPGNLGTILRSADAAGCDAVIVCDPVTDIFNPNVVRASTG 197 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIVLNERIFS 117 + + + A +A R + P AA L Sbjct: 198 ----------------VLFSVPLVVAESAPVLAWLRAQGVRTIATTP--AAEKLYTDADL 239 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E++GL+ + + + P+ SLN++ A ++ ++E + Sbjct: 240 RGPLAIVMGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLFEAVRQR 294 >gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 19/177 (10%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P++ + P++ LV + N+G + R + + +P W + S Sbjct: 109 AHPRMLDLPANPLL-LVAEGVEKPGNLGAMLRTADAVGVDGVIAADPVTDWGNPNVVRGS 167 Query: 62 ANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + + L+ R+N ++A V++ I Sbjct: 168 KGTVFSVPVAAAPTSETLE--------------WLRDNDIPLIATTPDTDVMHTDIDLSG 213 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V + G E++GLT+E + + + + P+ SLN++ + ++++E M V Sbjct: 214 PVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAIVLYEAMRQRGVRG 270 >gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514] gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514] Length = 155 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 26/169 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I++V+P++ N G VAR T+L L+ P +K + V Sbjct: 3 IVMVEPEIPPNTGNVARLCAATK-TRLHLIEPLGFKLDDKQLKRA--GMDYWQQVEWRQW 59 Query: 74 --FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + E + AD + + R + P++ ++FGRE Sbjct: 60 ANWKTFCEQLPADARLWFVESDGPRLYTEVQYLPEDY---------------LVFGRETA 104 Query: 131 GLTNEEI-ALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + + + P+ N SLN+S ++++E + + E Sbjct: 105 GLPKQLLKENPERWLRLPMFNAESRSLNLSNCAAIVLFEALRQQGFAGE 153 >gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605] Length = 542 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++ L N+G V R+ + + R + A +A A + R Sbjct: 312 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 371 Query: 73 VFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + +L E + D + + A V + + ++ G E Sbjct: 372 VVNLNRSL-EKLKDAGYRVVGLAA--------------EGDVTLTDVDLSGPMVLVTGSE 416 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GL+ + ++ P+ + PSLN S A L V+E + + Sbjct: 417 DQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 473 >gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 212 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 80/202 (39%), Gaps = 15/202 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ ++L + N+ V R+ + + LV + +P +++ S +A Sbjct: 19 LKRRQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLVYTIEEFPDL-SKNVSGSALKW 77 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKS---VLAPKEAAIVLNERIFSGQNVGII 124 ++ ++ I D + T R++ + P+ + + ++ Sbjct: 78 LEIIKHKD-----IQDCYD----TLRSQGMTIYTTYLADPQR--SHDLYSLDLTKPTALV 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 FG E+ G++ E L++ P+ + SLNIS A + ++E + + + + + Sbjct: 127 FGNEQRGVSEEASRLADGNFVIPMMGMVQSLNISVACAVTLYEALRQRRAAGHYDHPKLS 186 Query: 185 TPATKGELLSFLDYLEISLEER 206 L ++L + S+EE Sbjct: 187 REEISTRLHNWLQREKRSIEEL 208 >gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 112] Length = 184 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 26 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 84 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 85 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 130 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 131 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 184 >gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas artemidis F0399] Length = 277 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 18/177 (10%) Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 TP ++ + P ++L Q N+G + R + + L+ + K Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ ++ + K+ + A+ R+ L + E I + Sbjct: 171 RAAMGGLFYMNVAQGVEE-KDFLQ--------WAQERSLN---LYAAACDDMAQEHIHTD 218 Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++FG E G+++ +A + + P+ SLN+S A ++++EC+ I Sbjct: 219 FTKTTAVVFGNEANGVSSAILARARR-VYVPMFGPVESLNVSAAAAVILYECVRQRI 274 >gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7] Length = 259 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%) Query: 9 QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + ++ P II+ + + N+G + R + + R + +SA A Sbjct: 104 REKSEDPFIIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASW 163 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV NL A+ DL +IY T +N L +G+ Sbjct: 164 LPVARV-PNLAAAVDDLKKQGIWIYGTDGAGQNYS---------GADLR------GPIGL 207 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E +G+ + ++S P+ SLN S A + ++E + Sbjct: 208 VVGSEGFGMGRLMKEKCDMLLSLPMAGKITSLNASVAAGIFMYEIVRQR 256 >gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199] Length = 289 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 11/164 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L N+G V R+ F + + L + + ++ A V+ VRV N Sbjct: 134 VVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVV-N 192 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ DL N E V R+ G I+ G E GL Sbjct: 193 LARALRDLQ----------ENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLT 242 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +A+ P P SLN+S A + +++ + + Sbjct: 243 RETCDALARLPTCPPIGSLNVSAAAAVALYQARLARTGRDDLQL 286 >gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 167 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-- 76 L P + +N+G R F + +L ++ P ++A +A + + + Sbjct: 26 LFQPAIPQNVGACIRLSACFGV-ELHIIEPTGFQFDDRAMKRAALDYGPLAHMTRHPDWA 84 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A I TT V P + ++FG E G Sbjct: 85 AFQAARGSGRLILFTTKGAAPLTDFVFQPDD---------------TLLFGSETAGAPEH 129 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A ++A + P+ P SLN+S + + ++E + + Sbjct: 130 VHAAADARVFIPIRPDARSLNLSVSAGIGLFEALRQT 166 >gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii M21/2] Length = 260 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEA 80 Q N+G + R+ F + L + K +S A + V + +A Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAV---RIPVIETGAMPQA 175 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I T R + A ++ + + V ++ G E GLT+E IA Sbjct: 176 I--------TLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAAC 227 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 N+ + P+ SLN A +++W E S+ Sbjct: 228 NSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260 >gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 248 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 17/165 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R+ + + + R + ++A A I VRV + Sbjct: 98 ILLDELEDPHNLGSILRSADATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNM 157 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + E +I T + A ++ +GI+ G E G++ Sbjct: 158 SNTIDELKERNVWIVGT--------------EAEADQDYRQLDGSLPIGIVIGNEGKGMS 203 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + P+ SLN S A L+++E ++ Sbjct: 204 RLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYEVYRKRHPLGDQ 248 >gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115] gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer ribonucleate guanosine 2-methyltransferase) [Deinococcus deserti VCD115] Length = 222 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 21/196 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE------KARSSSANADCVIDSVRVFSNLK 78 N+ + R + + V P+ G + +A S SA+ + S + Sbjct: 31 PHNLSAIIRTCDAVGVLEAHAVPPKGGPLASFSGHTYEATSGSAHKWVPVHSHTDAVSAV 90 Query: 79 EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ F + AT R+ P + ++ G E+WG+++E Sbjct: 91 HALQGQGFQVLATHLSQRSVD--YREPDYT-----------RPTCVLLGAEKWGVSDEAA 137 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELLSFL 196 ++ I P+ + SLN+S A +++E + + + + A + Sbjct: 138 DAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQRLAAGMYAAPQLSPEALDRLAFEWAY 197 Query: 197 DYLEISLEERGYFRPV 212 L + +ERG P Sbjct: 198 PDLVSTYQERGEGYPA 213 >gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160] Length = 247 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG--------------DAEKSVYDTELD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 190 GPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247 >gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 236 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 24/153 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 +N+G +AR++ F L L P+ G +E A +SA A + V L+E + Sbjct: 100 PQNLGAIARSVELFGGVGLLL--PQRGSAPINEVAVKASAGALLHL-KVVRVDFLEEGLL 156 Query: 82 ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +YA R+ S L + + I G E G+ E + Sbjct: 157 AFKESGGNVYALETGGRDIRDSQL---------------KRPLAFILGSEGKGIDAELVE 201 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L++ ++ P PSLN+S A + WE Sbjct: 202 LADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRR 234 >gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp. AT1b] Length = 250 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R + + R ++ +S A I RV + Sbjct: 102 ILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNL 161 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E ++ T A+ +++ R+ + ++ G E G++ Sbjct: 162 TRTLEELKEKGLWVVGTDAKESQDYR--------------RLDGNMPLVVVIGSEGKGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A L+++E + Sbjct: 208 RLVRESCDFLVHLPMVGHVTSLNASVAAALLLYEVHRSR 246 >gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 289 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 25/174 (14%) Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P S + P +++V+ + N+G + R+ + L + +P + +S Sbjct: 126 PAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTDLFNPNVVRASTG- 184 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIVLNERIFSG 118 + + I A + R R P +A L+ Sbjct: 185 ---------------VLFSVPVIVAGSGEVREWLRERGIRSVATTP--SATTLHTDSDLR 227 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E++GL++ +A ++A + P+ SLN++ A ++ ++E + Sbjct: 228 GPLAIVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQR 281 >gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A] gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. NATL1A] Length = 166 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 29/168 (17%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P + L +P++ +N G + R FN++ L ++ P +K + Sbjct: 5 NRTRPRVSLFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRA--GLDYWPH 61 Query: 71 VRV--FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V V + + + I A T ++ N ++ I+ ++ ++FG Sbjct: 62 VDVHLYESFDQYKNSFKNSRIIAFTKKSNNL-------------ISNIIYKDTDI-LLFG 107 Query: 127 RERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166 RE GL I + P+ SLN+S A ++ + Sbjct: 108 REDTGLPESIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCY 155 >gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative [Mariprofundus ferrooxydans PV-1] gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative [Mariprofundus ferrooxydans PV-1] Length = 155 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 25/167 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+LV+P++ N G +AR L LV+P +++ + V Sbjct: 7 IVLVEPEIPPNTGNIARLCGCTGAA-LHLVHPLGFSVDDRSLKRA--GLDYWQYLDVTHH 63 Query: 75 SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+ ++ Y +++ +F V ++FG E G Sbjct: 64 DSWQQLRSSLDGNRNWYGMSSKASTSFWDVTY--------------SHGDVLVFGPETRG 109 Query: 132 LTNEEIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENSIVSS 176 L+ +A + + P+ P SLN++ + ++E + Sbjct: 110 LSAAILAEIQPL-TVPMRADAPVRSLNLATVCGITLFEALRQLKADR 155 >gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae EF01-2] gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae EF01-2] Length = 168 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 23/177 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P++ N G V R N T L L+ P ++ + + RV Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRRMRRA--GLDYHEYARVL-- 58 Query: 77 LKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 H +A TAR + L + V G +FG E GL Sbjct: 59 -------CHADWAAFLRTARPDASRMFALTTQSLQWVHATCFRPGDW--FVFGAETRGLA 109 Query: 134 NEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ++ + P+ SLN+S AV + V+E + + P Sbjct: 110 AA--LRASFAPAQCLRLPMIEGQRSLNLSNAVAVTVFEAWRQNGFAMPSGQSAVAMP 164 >gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137 str. F0430] Length = 277 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 18/177 (10%) Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 TP ++ + P ++L Q N+G + R + + L+ + K Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ ++ + K+ + A+ R+ L + E I + Sbjct: 171 RAAMGGLFYMNVAQGVEE-KDFLQ--------WAQERSLN---LYAAACDDMAQEHIHTD 218 Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++FG E G+++ +A + + P+ SLN+S A ++++EC+ I Sbjct: 219 FTKTTAVVFGNEANGVSSAILARARR-VYVPMFGPVESLNVSAAAAVILYECVRQRI 274 >gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004] gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038] gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003] Length = 219 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + +A V+ ++ +AIA Sbjct: 19 PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSAAAGSNSWVQVKTHPHIADAIA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L ++++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 74 YL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISPEALALADQ 124 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + + A + + Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYKRTHSVLAESEQQRLLFE 178 >gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena DSM 20109] gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena DSM 20109] Length = 264 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 15/167 (8%) Query: 2 TPYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 TP L + G V++L ++ N+G R + + LV+ P ++ Sbjct: 100 TPRPTSLADLAGRPGDVVVLDGVRIVGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVV 159 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSG 118 ++ V V + +EA TA R ++A + A + + G Sbjct: 160 RASRG-YVFSLPVVLATREEA----------TAALRELDVPLVAFEAAGELGTGDLAALG 208 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + ++FG E+ G + E+ +S P+ SLN+S AV + + Sbjct: 209 ERLALVFGSEKRG-ASAELTAGARTVSIPMRTAADSLNVSVAVGIAL 254 >gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] Length = 338 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R+ F + L R + +A A + RV +NL +AI Sbjct: 192 EDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARV-TNLNQAIE 250 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R + V+ +E A + + ++ G E G++ + Sbjct: 251 ----------RLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDH 300 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++S P+ SLN S A +M++E M + Sbjct: 301 MVSIPLAGKTTSLNASVAGGIMLYEVMRQRRANQ 334 >gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 167 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 9/159 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62 Query: 77 LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L + + + F L K N G ++FG E GL Sbjct: 63 FHAFLVSEGLSPVNSQSPSGARLF--ALTTKGTPAHSNVSYQDGDY--LMFGPETRGLPA 118 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V ++V+E Sbjct: 119 YVLDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQ 157 >gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Bifidobacterium breve DSM 20213] Length = 292 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 16/148 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFSNLKEAIAD 83 N G V RA + V+ + K S+A + + + + +D Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMRTNEFFDWTSD 201 Query: 84 LHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 H +Y T R P+ VL ++ + ++FG E GL E + Sbjct: 202 HHVDVWAADVYGTEKRK---------PESLPAVLADKAAVSMSQAVLFGNEARGLEPEIL 252 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165 I+S P+ SLN+ + +M+ Sbjct: 253 ERCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured Desulfobacterium sp.] Length = 270 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 20/156 (12%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSN 76 VDPQ N+G +AR ++ + + R P+ +SA A I +V S+ Sbjct: 120 VDPQ---NLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +KE ++R + + V + + + ++ G E G+ Sbjct: 177 IKE------------MKDRGIWVVGMDAMADMPVFSCDLK--GPIALVIGSEGKGIRQLV 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + ++S P SLN S A + ++E Sbjct: 223 KANCDFLVSIPQKGEVSSLNASAAGAVAMYEVFRQR 258 >gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis ATCC 21756] Length = 276 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 11/171 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L S G +++L +NIG + R+ F + L + S ++ A Sbjct: 117 ELAASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVD 176 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + RV NL A+ +L + +A A + + G ++ G Sbjct: 177 KVPYARVV-NLSRALEELA----------DLGWRAVALAGEAEQTLDEVLDGAPTVLVLG 225 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G+ + + P+ F SLN+S A + ++E + ++ Sbjct: 226 SEGEGVRRLVAEHCDVLGKIPMPGGFESLNVSAAAAIALYEASKPRGKATA 276 >gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 259 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 15/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79 Q N+G + R+ F + L + + K +S A VI++ ++ E Sbjct: 118 QDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPVIEAGKM----PE 173 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 AIA L R + A ++ + V ++ G E GLT+E IA Sbjct: 174 AIALL--------REKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAA 225 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN A +++W E S+ Sbjct: 226 CTGTVRIPMTDRVESLNAGIAGSILLWHFREESL 259 >gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 23/177 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62 + ++ P ++LV Q N+G R+ F + ++ P+D A + Sbjct: 87 DVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFGVH--AVIAPKDRAVGINATVEKVAC 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ N V Sbjct: 145 GAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAETNLYDV--------------QHQG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V + G E GL + ++ P+ SLN+S + + ++E +V Sbjct: 191 AVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEARRQRVVKP 247 >gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 91] Length = 262 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R + L A + + +G + Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLSIPVALTDSHGARAIYDCDLAG-PLAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262 >gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506] Length = 362 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 22/172 (12%) Query: 9 QNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +++++ PV+++ + N+G + R + + R + R +A A Sbjct: 192 KSASEQPVLVVAEGLNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGA--- 248 Query: 68 IDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 +++ RV NL A+ +L +IY T A+ +V + A + Sbjct: 249 LENFPVARVV-NLSRALEELKAAGFWIYGTAAKEGKAIHTVQFTGKLA----------RP 297 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E GL+ + ++S P+ PSLN+S A + ++E Sbjct: 298 VVLVVGSEGDGLSLLIQRCCDELVSIPLRGNTPSLNVSVATGMALYEIYRQR 349 >gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2] gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 280 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 20/184 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 S + +I + + E + A T ++ + +L + Sbjct: 167 SMGSVFLIPWTWLDGSPYELRKLGFRTVAMALTEKSISIDNPIL-------------ATE 213 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I+ G E GL NE I ++ ++ P+ SLN++ A + W+ + Sbjct: 214 PKLAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273 Query: 179 NVKE 182 + Sbjct: 274 LPDD 277 >gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37] gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37] Length = 234 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 74/181 (40%), Gaps = 17/181 (9%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M+P + N + + + ++ N+ + R ++ + + ++ Sbjct: 1 MSPERLARITNMLNYRQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDVH--ATWENKTTQ 58 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + +++ + + ++ L++A+ R + ++AI E + Sbjct: 59 ISGNTATGSQNWV-NLHSHETLEDAVK--------ALRAQGMQIIATNLSDSAIDFRE-V 108 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G+E+ G++ E +AL++ + P+ + SLN+S A L+++E ++ Sbjct: 109 DYTKPTAILMGQEKHGISPEALALADQDVIIPMVGMCQSLNVSVASALILYEAQRQRELA 168 Query: 176 S 176 Sbjct: 169 G 169 >gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 23/178 (12%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 +L + ++GP ++LV N+G R L ++ P+D + R + Sbjct: 87 EELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVA 144 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A VI V V + L++ ++ T EA + L ++ +G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTG 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + II G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 192 PTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKR 248 >gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB] Length = 394 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 14/150 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAI 81 N+G + R+ +F + L LVN S A ++ A+ V +AI Sbjct: 256 SNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV-----------QAI 303 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + F A + + V L + + + ++ G+ER GL++ + Sbjct: 304 SGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAKLP-EKMVLVLGQEREGLSDTAFKQGD 362 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 363 MSLSIGGTGNVESLNVSVATGVLLAEWWRQ 392 >gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424] gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424] Length = 270 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 22/151 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEA 80 + N+G + R+ + + + R S+ A +SA A I+ + V S+L +A Sbjct: 130 EDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVSSLIDA 186 Query: 81 IADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I L +I TT R+ +I + I+ G E G++ Sbjct: 187 IKKLKEKGFWIAGTTLTERS-------------EDYTKIAKDVPLVIVVGNEGEGMSKVV 233 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + P+ SLN+S A ++++E Sbjct: 234 TNECDFLYHLPMLGKVQSLNVSVAAGIVMYE 264 >gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 168 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 18/182 (9%) Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 M P+ + ++ +P++ N G R +L LV P G+ E+++ Sbjct: 1 MNPHLEAPAAPDEPFAHVVYFEPRIAGNTGSAIRLAAVTG-ARLHLVEPL-GFDLEESKL 58 Query: 60 SSANADCV-IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A D + + V + A+ L + V A + A + Sbjct: 59 RRAGLDYHDLAVLTVHPSFDAAMDAL------------PGRRVFAFEVGATTSYTSVAYQ 106 Query: 119 QNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++FG E GL + + P+ P SLN++ A + +E Sbjct: 107 PGDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRSLNLTNAASIATYEAWRQLGFPG 166 Query: 177 EK 178 Sbjct: 167 AP 168 >gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 221 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 20/144 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R F + ++ + G + + A+ + +++ +SN + I +L Sbjct: 45 HNTSAVVRTCEVFGVQTTHIIEKKYGKRLDSKIAM--GAEKWV-TIKRYSNTQSCIEELK 101 Query: 86 F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 I AT P +AI L E FG ER GL+ E I+ ++ Sbjct: 102 LQGYRIVAT------------VPAPSAIPL-EHFNIDAKSAFFFGTERDGLSQEVISQAD 148 Query: 142 AIISFPVNPLFPSLNISQAVLLMV 165 ++ P+ SLNIS +V +++ Sbjct: 149 EFLTIPMVGFTESLNISVSVAIIL 172 >gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1] Length = 162 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 11/164 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R + + ++ P S++ + ++ Sbjct: 9 IALFQPDIAGNTGTILRLSACLGVH-VHIIEPAGFNLSDRNLKRA--GMDYLEHA----- 60 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E D T R+ + +L A I +N ++FGRE G+ N Sbjct: 61 LLERHIDWQHFIET---MRHFNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVPNYV 117 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ P+ P SLN++ +V + E + + +NV Sbjct: 118 YEAVDHTLTIPMQPHARSLNLAMSVAITTGEALRQIGYNEIENV 161 >gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium vannielii ATCC 17100] Length = 310 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 24/163 (14%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----- 65 A V+IL N+G V R+ F + L +V R P A + SA+ Sbjct: 155 DAPATVVILDQVTDPHNVGAVLRSAAAFGIGAL-IVQDRHSPPLTAALAKSASGGLEHVP 213 Query: 66 --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V++ RV LKE +F + E A + + G+ V Sbjct: 214 VIEVVNLARVLEKLKE----------------RDFLCIGFDSEGAQRFDAALAGGRRVAF 257 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL +AI + SLNIS A ++ Sbjct: 258 VFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVFH 300 >gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae 91E135] Length = 232 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 30/220 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADC 66 L N ++L D +N R + L+ + ++ + + + ++ Sbjct: 42 LSNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNTYTLNPGVVLGASKWID 101 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +I + ++ A +L N +K V + + + + I FG Sbjct: 102 IIK----YQCVESAFDNL---------KGNGYKIVATSLDNEAIFLDDFPIDDKMAIFFG 148 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E GL+N + ++ + P+ S N+S AV ++ + + SS K + ++ Sbjct: 149 TELTGLSNTVLENADLHLKIPMYGFTQSYNLSVAVSIVFYSLISRLRKSSIKYLLNED-- 206 Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226 E + + Y+R + KK + ++ L +F Sbjct: 207 -------------EKLVLKLDYYRKIVKKYQTIEKLK-LF 232 >gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10] gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua] gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516] gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F] gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1] gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92] gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10] gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CA88-4125] gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola] gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides A] gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27] gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 230 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + +A V+ ++ +AIA Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSAAAGSNSWVQVKTHPHIADAIA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L ++++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 85 YL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISPEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + + A + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYKRTHSVLAESEQQRLLFE 189 >gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 171 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 17/174 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 I+L +P + N G +AR T+L L+ P +K + D+V V Sbjct: 6 IVLFEPLMPANTGNIART--ATGTNTKLHLIEPLGFKLDDKHVKRA--GLDYWDTVDITV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL + T ++ + + A + + +FG+E GL Sbjct: 62 HENLP--------AFMATLKDTDELFLISKFAPRAYHEADYTNPDHDYYFLFGKETTGLP 113 Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + + P N SLN+S ++++E + + E + Sbjct: 114 EPFMKQHPEKALRIPQNDEHIRSLNLSNTAAIIIYETLRQQGFPNLDLTHEYDY 167 >gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14] Length = 183 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +++L D + N+G V R+ F + + L P + ++ + ++ + Sbjct: 24 PLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEW-KY 82 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F N ++A+ +LH ++Y + + + V + + Q+ +I G E Sbjct: 83 FKNTEDAVNELHKKGYYVY--SIEQVEGSTKL----QNLEVDIRQHNTDQHYAMIMGNEV 136 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + + +S+ + P SLN+S +++WE +N Sbjct: 137 KGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKN 178 >gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991] gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991] Length = 169 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74 ++L +P++ +N G + R N T L L+ P E+ + D V +D RV+ Sbjct: 4 VVLYEPEIPQNTGNIMRTCMASN-TVLHLIEPLGFSLDEQHLKRA-GMDYVKDLDY-RVY 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N +E T+ N+ + + A + ++ +I G+E G+ Sbjct: 61 KNWEEF---------TSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIPK 111 Query: 135 EEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + + + P+ SLN+S ++V+E + NV+ Sbjct: 112 EILKHQLDHCMRLPMVAKARSLNLSNCAAIIVYEVLRQLDYPGLSNVE 159 >gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1] Length = 179 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 10/144 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G R F + ++ L P + ++ A ++ + +A+ +L Sbjct: 37 NVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATESVEW-EHYPQTVDALKEL-- 93 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + + L + +I L E + + + ++FG E +G+ +E + L + ++ Sbjct: 94 ------KKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDEVLELCDHVLE 147 Query: 146 FPVNPLFPSLNISQAVLLMVWECM 169 P SLNIS + + VW M Sbjct: 148 IPQLGTKHSLNISVTLGISVWHMM 171 >gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pasteur 52237] Length = 262 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262 >gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 256 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 17/165 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71 G IIL + Q N+G + R+ FN+ + +N + KA S+ + + + Sbjct: 106 GLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVND 165 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L EA+ RN + VL+ A +N+ +IFG E G Sbjct: 166 VPVDKLFEALK------------RNGVR-VLSTNLKAEKYIYDCDISKNIALIFGNESRG 212 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + N+ + + P++ + SLN+S A + ++E ++ Sbjct: 213 V-NKSLDIYVDGSFKIPMDGMAESLNVSVAASICLYESQRQRLIK 256 >gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 151 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L P + +N G + R + L L+ P EK + V+ + Sbjct: 3 IVLFQPLIPQNTGTIGRLTVCTD-NDLHLIKPLGFELDEKKIKKA--GMDYWPHVKLHIH 59 Query: 75 SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + ++ + D ++ TT + ++ + +IFG E Sbjct: 60 ESWEDFLNNTPEDKTMVFCTTKCKKTIYEHTFTEDDY---------------LIFGNESH 104 Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 GL E +++ + P+ S N++ +V ++ +E + Sbjct: 105 GLPPEFYENFQDSLCTIPMRGDHLRSHNLANSVSIVTYEAIRQ 147 >gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris PB013-T2-3] gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris PB013-T2-3] Length = 169 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122 +L +A + P + + + + Sbjct: 60 YHDDLPAFLATI-------------------PDMEKLYIVSKFANHDYTDVDYTGAGDHY 100 Query: 123 IIFGRERWGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172 +FG+E GL + I P N +LN+S + ++++E + Sbjct: 101 FLFGKETTGLPEAFMRKYPENAIRIPQNDDNIRALNLSNSAAIVIYEALRQQ 152 >gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92] Length = 245 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 29/176 (16%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + + P IL N+G R + +V P+D + A + Sbjct: 88 KLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQ--AVVAPKDKSAPLNATAAKVAC 145 Query: 63 NADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A V + R +L+E TT + + Sbjct: 146 GAAESVPYVLVTNLARTLKSLQE------RGVWTTGTAGETDLDIY-----------QAN 188 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 189 LKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244 >gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum] Length = 352 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++LVD + NIG V R + L P + +S A+ ++ Sbjct: 167 GLGVLLVDCRSLANIGSVFRTSDGAGFNHVYLCGITGTPPRNEILKTSLGAEEFVNWSYC 226 Query: 74 FSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIV-------LNERIFSGQNVG 122 +L I +L I A + +L + +E+ + Sbjct: 227 HESLH-CIKELKRKGVKIIA--IEQSDKSIPLLESLDYLYENTKINNNQSEQQQQHSPIC 283 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW---ECMENSIVSSEKN 179 ++FG E GL+ E I + I P+ SLNIS A + + E +N IV + Sbjct: 284 VVFGNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSYVLSEKFKNIIVDNHLG 343 Query: 180 VKEQNT 185 +++ N Sbjct: 344 IEKINP 349 >gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 245 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L + P +++L N+G R + +V PRD + A+ + Sbjct: 86 PDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +RV + A T R +N V EA L E +G Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEHNIWIVGTAGEATHALYESKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVRQR 242 >gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 180 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 25/165 (15%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + N+G V R + +L + P ++ ++ A +D Sbjct: 28 PVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDW-EY 86 Query: 74 FSNLKE---AIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +++ +E + D +R + K P + +I Sbjct: 87 YTHPEEILGVLKDSGVTICGLEITENSRPYTDIKKDDFP----------------LCLIL 130 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ ++ + + + P SLN+S A + ++E ++ Sbjct: 131 GNEVDGIDDDVLQFCDHVFEIPQYGTKHSLNVSVAAGVALYEMVK 175 >gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris SK11] gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris SK11] Length = 169 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I L +P++ N G +AR N T L L+ P S+K + D V + Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIVYH 60 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++IAD +Y + + + V + ++ +FGRE G Sbjct: 61 KNLQDFMDSIADGGQLYLVSKFAEHVYSDVDYSDDE-----------KDHYFLFGREDTG 109 Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 L E + + I P+N SLN+S ++V+E ++ Sbjct: 110 LPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152 >gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 269 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 10/164 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P ++ AK +I + + N+G + R + ++ + ++ + Sbjct: 110 PDIRQKAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTE 169 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + F + EAIA H F L + A + + ++ + I+ Sbjct: 170 KLVAW-QYFPSTTEAIAFCH--------QEGFFIYALETIDNAKSVFQTVYQ-FPLAIVI 219 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E G+ + + L + I+ P SLN+ A +++++ + Sbjct: 220 GNEALGIESSILELCDEFITLPQLGWKNSLNVGVATGIVLYQIL 263 >gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae ATCC 35236] Length = 246 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRALKA 246 >gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius nubinhibens ISM] Length = 259 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 20/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+G + R+ F ++ PR G + + + + A ++ NL +AI+ Sbjct: 121 PHNVGAILRSAEVFGAQ--AVIAPRHG-SAPETGALAKTASGALERQPYLRVRNLADAIS 177 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +L + + + L + V ++ G E GL + Sbjct: 178 ELQAMGFLVLGLAGEAEDTIDAALD-----------GMRDRPVALVLGAEGPGLRQKTRE 226 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ P F SLN+S A + ++ E Sbjct: 227 TCDKLVKIPFAGGFGSLNVSNAAAVSLYASRER 259 >gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617] Length = 344 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + L + + ++ L D N+G + R+ +F L LV+ S A ++ Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243 Query: 62 -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+ V +AI+ F A + + V + L+ + Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKM 292 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G+ER GL++ + +S SLN+S A +++ E Sbjct: 293 V-LVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii 2AN] Length = 168 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV+P++ N G V R N T L L+ P ++ + + +V Sbjct: 4 IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRLMRRA--GLDYHEYAQVLRH 60 Query: 74 ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++A D ++A TT + F++ P + ++FG E Sbjct: 61 PGWTAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDW---------------LVFGAET 105 Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E E + P+ SLN+S AV + V+E Sbjct: 106 RGLPPELRETFPPAQRLRLPMVSGQRSLNLSNAVAVTVFEAWRQ 149 >gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 239 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + NIG + R+ F + + N + K SS A + ++ + S Sbjct: 96 TVILNNVSDPGNIGTILRSALAFEFDTVIIEN--IDIYNPKIIRSSLGA--IFSNLNIIS 151 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E + DL + +N A LNE F + + ++ G E G+ Sbjct: 152 TSNLEEILKDL--------KAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGID 203 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I ++ + P+ F SLN++ A+ +++ Sbjct: 204 KNLIKYASEKVYIPI--AFESLNVASALAIIL 233 >gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus xanthus DK 1622] gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus xanthus DK 1622] Length = 225 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 20/185 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74 ++L + N+ V R + + ++ ++ NP + + D +D V+++ Sbjct: 42 TVVLDRLEDSFNMAAVLRTCESMGVQEVHIIINPEAPFVPNS--RVAQGCDKWLD-VKLY 98 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E L ++R A +E A L F G + ++FG ER G++ Sbjct: 99 RTFAECREHL--------KSRGFSLYASAIQEGATSLYTLRFDG-KMALVFGNERRGVSE 149 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL-- 192 + +A + P+ SLNIS A C+ +I ++++ + + + Sbjct: 150 DVLAGVDGTFWVPMKGFSQSLNISAAAS----ACISRAIAWRDEHLGQSGDLSPEDAQAL 205 Query: 193 -LSFL 196 F Sbjct: 206 RERFY 210 >gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 237 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + NIG + R+ F + + N + K SS A + ++ + S Sbjct: 94 TVILNNVSDPGNIGTILRSALAFEFDTVIIEN--IDIYNPKIIRSSLGA--IFSNLNIIS 149 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+E + DL + +N A LNE F + + ++ G E G+ Sbjct: 150 TSNLEEILKDL--------KAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGID 201 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I ++ + P+ F SLN++ A+ +++ Sbjct: 202 KNLIKYASEKVYIPI--AFESLNVASALAIIL 231 >gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis Bt4] gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264] Length = 262 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L ++L Q N+G + R+ + Q P + S K S+ Sbjct: 104 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G V Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 209 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262 >gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38] gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38] Length = 220 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 25/188 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + +L +V + G +K + A+ +D + FS++++ I +L Sbjct: 46 HNTSAVMRSCEVFGIQELNVVEQKFGKSIDKEIAM--GAEKWVD-INRFSSIQDCITNLK 102 Query: 86 F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 I ATT P + +L+E + Q + FG ER GL+ E + ++ Sbjct: 103 QKGYQIIATT------------PHNDSCLLHEFDIT-QPSALFFGTERDGLSEEVMQQAD 149 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201 + P+ SLNIS + +++ I + + L LD+ Sbjct: 150 GFLKIPMVGYTESLNISVSAAIII-----QDITNRLRQSDIYWKLTEDEVLEKRLDWTRK 204 Query: 202 SLEERGYF 209 ++++ + Sbjct: 205 TIKDIDFI 212 >gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 269 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 28/166 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--------ADCVI 68 +IL Q N+G + R L L + K +S V+ Sbjct: 118 VILETLQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATVDVV 177 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + S L++ + + ATTA ++ + + + G E Sbjct: 178 EQA---STLRQ--NGVQ-VVATTAAAELDYWQLDLQR--------------PTVFLMGNE 217 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 GL++ +A ++ + PV P SLN++ + L+++E V Sbjct: 218 GAGLSDALMACASVTVKIPVAPEVESLNVAISTALLLYEAKRQRQV 263 >gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1] Length = 228 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ V R + ++ V WP EK R+ S A A ++ V + +A+ Sbjct: 30 PNNVSAVIRTADAAGVHKVHAV-----WPDEKMRTLSHTSAGARNWVE-VETHDTVADAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T +++ E A+ + I + II G E+ G+T + + ++ Sbjct: 84 R--------TLKSQGMQVLATNLSENAVDFRD-IDYTKPTAIILGGEKHGITQDALTEAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + + P Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILFEAQRQRQNAGLYDRDVSALP 179 >gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP] Length = 246 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 20/171 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 LQ+ + ++IL N+G R + +V P+D + AR + A Sbjct: 89 LQHKSNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSATLTAIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R +++ V EA + +G + Sbjct: 147 EAMPLIRVTN------------LARTMRELQDKHQIWIVGTAGEATTDIYTSQLTGA-IA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 194 LVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKL 244 >gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1] Length = 302 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 11/164 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G V R+ F + + L R S ++A ++D R +NL Sbjct: 150 VLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRT-TNL 208 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ L ++ F A EA+ L E F+G ++ G E+ G+ Sbjct: 209 AGALGTL---------KKHGFWIYGASGEASGNLYETDFTG-PTCLVLGNEQKGIRPLLK 258 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + +++ P+ SLN+S A +M+ E + Sbjct: 259 KHCDFLLAIPLAAGVESLNVSVAAGIMLVEIRRRQHFFAPGEPA 302 >gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium intracellulare ATCC 13950] Length = 154 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 19/162 (11%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P++ N G R +L LV P SE + + SV V ++L A Sbjct: 8 SPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAAA 66 Query: 81 IADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L ++A T+ A ++ ++FG E GL +A Sbjct: 67 WDALSPERVFAFTS--------------HAPTSFAQVRYRAGDVLMFGPEPTGLDAATLA 112 Query: 139 LSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + P+ SLN+S A + V+E + Sbjct: 113 DPHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGYAGAT 154 >gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2] gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2] Length = 227 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 13/139 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + + L + +D R SS A + +++ NL +AI +L Sbjct: 95 GNIGSIVRSAYALGVDGLVISGLKDLKMEGVIRRSSGAALDLPIALQF--NLYDAIKELQ 152 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 +RN V A + + F G+ I+ G E G+ + + N I+ Sbjct: 153 --------DRNFL--VYAADMQGEDVRTKRFHGKR-AILLGSEGEGVPKKAVQKCNEILK 201 Query: 146 FPVNPLFPSLNISQAVLLM 164 + F SLN++ A + Sbjct: 202 IEMKRDFDSLNVAAAAAIF 220 >gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 220 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 22/145 (15%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFSNLKEAIADL 84 N V R+ F + + VN + +++ R + A +D R + +K+AI D+ Sbjct: 44 HNTSAVIRSCDVFGIQE---VNIVEEVNAKRIDREIAMGAQKWVDLNR-YHTVKDAIQDV 99 Query: 85 HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + ATT P L + + + FGRE GL+ E + + Sbjct: 100 KQKGYQVVATT------------PHANDCNLRDFDVT-KKSCFFFGRETEGLSQEVLDEA 146 Query: 141 NAIISFPVNPLFPSLNISQAVLLMV 165 + + P+ SLNIS + +++ Sbjct: 147 DVFLKIPMVGFTESLNISVSAAIIL 171 >gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 270 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 22/174 (12%) Query: 4 YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +P L G V V+ Q N+G + R + L L + K +SA Sbjct: 106 SSPPLSKLRLGLV---VETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASA 162 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +V +L I + A T L+P + Sbjct: 163 G-QWFRRPPQVVPDLAAWIQSCRCHGIQVLAAT----------LSPTANCYWDQDLT--- 208 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL I ++A + P+ SLN++ L+++E + Sbjct: 209 RPTLFLLGNEGAGLREATIQQADAQVRIPMAEGVESLNVAMTGGLLLYEALRQR 262 >gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 196 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F ++++ L +P RSS++ A +++ R Sbjct: 22 KDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSAS-ARKWVETER 80 Query: 73 VFS--NLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L A+ I AT+ + + + II G E Sbjct: 81 HEDPAQLAAALRKKGC-RILATSCSP--SARPLREWDMTGP-----------TAIIMGNE 126 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNT 185 G+ E + + + + P+ + S N+S A +++ E + + E+ Sbjct: 127 HRGVDAELMEIVDGEVYIPMFGMIQSFNVSVAAAVILSEASRQRQQAGKYETPTYTEEEY 186 Query: 186 PATKGELLS 194 A E L+ Sbjct: 187 AAVLEEWLA 195 >gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus profundus DSM 5631] Length = 232 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 12/149 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + +N+G + R+ F + + R +E SA A +D RV NL + Sbjct: 92 EDPQNMGAIMRSAEFFGCAGVVIPKRRCVQVNETVAKVSAGAVFHLDIARV-ENLANILK 150 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L T + + + + + I+ G E GL+ + Sbjct: 151 KLKKFGITVVGADLDGEPLRNVDLSPPL-----------AIVVGGEDKGLSKPVKKQCDF 199 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I SLN+S A ++++E Sbjct: 200 IAKIEGYGKINSLNLSVAGAIIMYEFRRR 228 >gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402] Length = 258 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 12/164 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L G V+IL N G + R+ F + + + + E SA A Sbjct: 103 KLAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALA 162 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V V + + T R + + L + F + V +I G Sbjct: 163 WVPFVEVTN-----------LVRTVERLKKEGFWIYGADAVGKALPDLTFPKKTV-LIMG 210 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G++ + I+S P SLN+S A ++++E Sbjct: 211 SEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254 >gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 227 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ V WP E +SA A +D V N+++AIA Sbjct: 30 PNNVSAVIRTADATGIHKVHAV-----WPHEMRTLSHTSAGARNWVD-VETHDNIEDAIA 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + + + P Sbjct: 135 DIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSSVP 178 >gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 15/157 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 IIL + N+G + R+ +F + + R + +SA A I++++V Sbjct: 87 IILDKIEDPHNLGAIIRSAESFGFDGVIIPERRSASVTSTVYKTSAGA---INNIKVIRV 143 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +NL I DL F EA +++ G V ++ G E G++ Sbjct: 144 TNLTRTIKDL---------KDMGFWIYGLAGEADSDISKADLKG-KVTLVIGNEGEGISR 193 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I+ P+ SLN S A + ++E + Sbjct: 194 LVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230 >gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6] gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii SP-6] Length = 244 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62 L ++ +GP ++LV N+G R ++ P+D A + ++ Sbjct: 87 DLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGVNATVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + V + L E + T+ E A I Sbjct: 145 GAAETVPYFMVTNLARTLNELKERDIRVIGTS--------------EDATQSIYDIDLSG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 191 PVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQR 243 >gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae] gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae] Length = 243 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74 V+ L + Q N+G + R +F V + ++K SS A ++ V + Sbjct: 98 VVFLDNVQDPGNVGTIIRIAKSFGFDT---VVSNVNFYNDKVIRSSQGALFTVNLVNYNY 154 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLT 133 NL + +N FK + + V E++ F I+FG E G++ Sbjct: 155 DNLTNILLKY---------KQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +++ +I P+N F SLN++ ++++E + Sbjct: 206 SALADIADMLIYVPIN--FESLNVAVCAGIVLYEANKA 241 >gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344] gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1] gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229] gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668] gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247] gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a] gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei DM98] gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 14] gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 9] gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei B7210] gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei 7894] gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei NCTC 13177] gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia pseudomallei BCC215] gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243] gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344] gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1] gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229] gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668] gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106a] gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247] gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305] gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH] gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU] gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280] gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e] gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399] gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13] gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655] gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei Pakistan 9] gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei MSHR346] gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse 4] gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1106b] gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20] gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710a] Length = 262 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262 >gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium Broad-1] Length = 267 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 11/141 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ L+ PR P ++ + A + R+ EA+ L Sbjct: 132 NVGAIFRSGAALGF-DAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWY-EALPSLS 189 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 TT L + A+ + + + V ++ G E GL+ ++ Sbjct: 190 AAGFTTV--------ALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAI 241 Query: 146 FPVNPLFPSLNISQAVLLMVW 166 P++ SLN++ A + + Sbjct: 242 IPMSAGIDSLNVAAATAVACY 262 >gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B] gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulovorans 743B] Length = 309 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N+G + R + + + R+ + +SA A + +V Sbjct: 162 IIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVYKTSAGAVQYMKVAKV-P 220 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ I L + A + + + F G +I G E G++ Sbjct: 221 NINSVIDSL---------KKKGIWIYGADMDGKVYCQDANFRGA-AALIIGSEGRGISKL 270 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN S A ++++E + + Sbjct: 271 TKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRM 308 >gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 259 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 9/151 (5%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ F + L + + K +S A + + V + + AIA Sbjct: 118 QDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGA-MPAAIA 176 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R +N A ++ + R V ++ G E GLT E IA + Sbjct: 177 --------ALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSG 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN A +++W E S+ Sbjct: 229 TVRIPMTDRVESLNAGIAGSILLWHFREESL 259 >gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198] Length = 229 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 26/178 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81 N+ V R + ++ WP EK R +A ++ + +V + +A+ Sbjct: 19 SHNVAAVIRTADAVGIPKIH-----AIWPEEKMRMLVSPAAGSNSWV-NVETHPTITDAV 72 Query: 82 ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + AT ++ A+ E I + II G+E+ G++ + I Sbjct: 73 GAFRTQGMQVLATHLSDK------------AVDFRE-IDYTRPTCIIMGQEKTGISQDAI 119 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 AL++ I P+ + SLN+S A L+++E + N E + ++L F Sbjct: 120 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESTLTEEEQQILLF 177 >gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23] Length = 262 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 13/175 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +++ V++L+ + N+G + R+ L LV S + +S Sbjct: 101 EVRLPQDPLVLVLLGLEKPGNLGAILRSADGAG-AHLVLVAEGVDLYSPQVIRNSTG--- 156 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V+ S+ VF +E A + + P+ + E G V + G Sbjct: 157 VVFSLPVFPVAEEEAARF-------LEEKGLYPVAATPRGERVYWEEDYRRG--VAFLLG 207 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E GL + + A + P+ SLN++ + L+++E + + Sbjct: 208 AEDRGLPEVWLKRAQARVRIPMRGRADSLNVAVSAALLLYEALRQRSLHDPPQPP 262 >gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes] Length = 158 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL P++ N G + R N L L+ P K + +VR + + Sbjct: 4 IILFQPEIPPNTGNIIRLCANAGCG-LHLIEPLGFELDNKRLRRAGLDYHEYTNVRRYPD 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133 L+ + L ++A T + F V + +FG E GL Sbjct: 63 LRSCLESLAQPRLFAFTTKGSRAFHEVDYQR--------------GDAFLFGPESRGLPG 108 Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 N + + P+ SLN+S V + V+E Sbjct: 109 RVRNALLPE--QRLRLPMRGGCRSLNLSNTVAIAVYEAWRQ 147 >gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia rustigianii DSM 4541] gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia rustigianii DSM 4541] Length = 233 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+L +P++ N G + R N + L L++P +K + +D + Sbjct: 68 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAG-----LD----Y 117 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------ 122 S + I H YA L P R+F+ G Sbjct: 118 SEFAD-IKHHHDYYAF------LESEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYRED 170 Query: 123 --IIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL + I P+ S+N+S +V ++V+E Sbjct: 171 DYLMFGPETRGLPPYVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQ 223 >gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N G + R + + R + +SA A + RV + Sbjct: 172 IIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVSKASAGAVEYVPVSRVTN 231 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + ++ T + ++ G E G+ Sbjct: 232 ISQTIEYLKKNNVWVVGT--------------DSTGEKAFYESDLKGPMALVVGSEGEGM 277 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A ++++E ++ Sbjct: 278 GKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQR 317 >gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae BGR1] gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae BGR1] Length = 260 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A L G V++L Q N+G + R+ + Q+ V+ S K S A Sbjct: 104 AAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGA 163 Query: 65 DCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++D + +++ A IA L A T + V Sbjct: 164 HFLLD---IHEDVEAADLIARLGVPVALT-------------DSHGARAIDDCDLSGPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 208 WVFGNEGAGVSAPWREAAKLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 257 >gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9301] Length = 160 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 24/165 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L +P++ +N G +AR+ F++ L L+ P +K + + +V + N Sbjct: 3 VALFEPRIPQNTGNIARSCAAFDIP-LNLIEPLGFKLEDKYLKRAGLDYWPLVTVNRYEN 61 Query: 77 LKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + F+ A TT R + K+ + L + F ++ ++FGRE GL + Sbjct: 62 FE------KFMTAKTTKR------IISFSKKNGLYLKDFKFKQDDI-LLFGREDSGLPDS 108 Query: 136 EIALSNAIISF--P----VNPLF---PSLNISQAVLLMVWECMEN 171 I S+ +IS P N SLN+S A + ++E + Sbjct: 109 IIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAHKQ 153 >gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622] gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK 1622] Length = 282 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++L Q N+G + R+ + + R + +SA A R Sbjct: 128 PPLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIAR 187 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V N+ A+ +L + V A A + ++ G E G+ Sbjct: 188 VV-NISRALEEL----------KEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGV 236 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + + + P+ SLN S + ++++E S + Sbjct: 237 RDGVLKHCDFRLRIPMAGQVGSLNASVSAGILLYEVARQRGTVSGR 282 >gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium spinosum DSM 4136] Length = 193 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 23/177 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + V++L Q N+G R L V P+D S+ + Sbjct: 32 LADKPNPLVLVLDCIQDPHNLGACLRTADAAGC-DLV-VMPKDKTAPISDTVIRVACGGA 89 Query: 66 CVIDSVRVFSNLKEA---IADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + RV +NL A + DL + T ++ + + Sbjct: 90 ENVPIARV-TNLARAMDKLKDLGVWFVGT--------------EDEGKQSIYDVDLKGPI 134 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GI+ G E G+ + ++ P+ P LN+S A + ++E + + + Sbjct: 135 GIVMGAEGEGMRRLTGERCDFLVKIPMTGQVPCLNVSVATGVCLFEVVRQRLSGGGR 191 >gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36] gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36] Length = 228 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 70/177 (39%), Gaps = 22/177 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R + + V P++ + ++ + + V N+ AI +L Sbjct: 30 PHNLAAVVRTCDAVGVNNVHAV--WSIRPTKVSGGTATGSQNWV-KVHSHDNIAAAIKEL 86 Query: 85 HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + AT N + + ++ I + I+ G+E+ G++ E +AL+ Sbjct: 87 KAQGMQVLAT-----NLSDTAVDFRD--------IDYTKPTAILMGQEKTGISAEALALA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 + I P+ + SLN+S A +++E + + ++ + + + F + Sbjct: 134 DQDIIIPMVGMVQSLNVSVATATILYEAQRQR--DNAGMYQGESKLSAEEQHKIFFE 188 >gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215] gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9215] Length = 160 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 26/164 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76 L +P++ +N G +AR+ FN+ L L+ P +K + V V + N Sbjct: 5 LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRA--GLDYWPLVTVNKYDN 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +A ++ + + K I L + F ++ ++FGRE GL + Sbjct: 62 FEKFLA-----------SKATKRIISFSKRNGIYLKDFKFKHDDI-LLFGREDLGLPDYI 109 Query: 137 IALSNAIISF---------PVNPLFPSLNISQAVLLMVWECMEN 171 I S+ +IS SLN+S A + ++E + Sbjct: 110 IDKSDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQ 153 >gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630] gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3 [Clostridium difficile] gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196] gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291] Length = 248 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + +SA A + +V + Sbjct: 100 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 158 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I T R + + A ++ +G +G++ G E +G++ Sbjct: 159 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 207 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ P+ SLN S A ++++E + S Sbjct: 208 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKS 247 >gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-66c26] gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP 107932] gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-63q42] gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC 43255] gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-76w55] gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-97b34] gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-37x79] gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-32g58] Length = 245 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + +SA A + +V + Sbjct: 97 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 155 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I T R + + A ++ +G +G++ G E +G++ Sbjct: 156 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 204 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ P+ SLN S A ++++E + S Sbjct: 205 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKS 244 >gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 296 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 11/177 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ V +L + + N G V R + L + + K+ +S + Sbjct: 129 QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 188 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 + + +A+ L R+ A + +E G Sbjct: 189 FHLPVAVGVP-VDQAVQGL--------RDAGVRILAADGAGADDLDDELDAGTMGTPTAW 239 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 IFG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 240 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 296 >gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442] gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442] Length = 261 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ +L+ +A ++AT R A++ NE + + +FG Sbjct: 166 SEIYPQADLEIWLASYKGRVFATALREEK----------QAVLYNEDLR--EPTAWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260 >gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea NRRL 2338] Length = 152 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 30/170 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFS 75 ++ P++ N G R M + L L+ P G+ + A+ A D + V Sbjct: 4 VVFYHPEIPGNTGNAIR-MAAGSGAALHLIEPL-GFSVDDAKLRRAGLDYHDRAALHVHP 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRER 129 +L A + L P + S + V ++FG E Sbjct: 62 DLDAA------------------WTALRPDRVFAFSSSATRSYETVSYRPGDVLMFGPES 103 Query: 130 WGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL E + ++ + + P+ P SLN++ + + V+E + Sbjct: 104 VGLPPELLE-ADYVTPLRIPMLPGNRSLNLANSAAIAVYEAWRQQGFAMP 152 >gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 251 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 12/175 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + + S K ++IL + N+G + R F + + R +E S Sbjct: 89 LSDLIERSKKSLKPLLVILDGLEDPHNLGAIIRNCVAFGADGVIIPKWRAAGVNETVSKS 148 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A I S+ N +AI L N+F V A E + E+I Sbjct: 149 SAGAVEHI-SISRVENTNQAIGLL---------KENSFWIVGA--ENGGRILEKIDLPFP 196 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I G E +GL + S+ +IS P + SLN S A ++++E + +S Sbjct: 197 LAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASAVILYEIAKKRKIS 251 >gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 154 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 34/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVIDSV 71 I+L +P++ +N G + R T L ++ P EK + ++AD + Sbjct: 3 IVLFEPEIPQNTGNIIRTCVCTG-TTLHMIRPFGFSMDEKQIKRAGMDYISHADII---- 57 Query: 72 RVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +E + TT A + +N +IFG E Sbjct: 58 -YYDCFEEYFEKYDKDDMFFFTT---------------KAEKSYSDVKYTKNSHLIFGPE 101 Query: 129 RWGLTNEEIALSNAI--ISFPV--NPLFPSLNISQAVLLMVWECMENS 172 GL E+I N + P+ N SLN+S +V + ++E + S Sbjct: 102 SRGLP-EKIRKINIQNDVRIPMKANEYVRSLNLSNSVAIGLFEALRQS 148 >gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8] Length = 270 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A G ++L + Q N+G + R L + L + K S+ S+ Sbjct: 120 AGGKYLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVG------SM 173 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 E D + T + ++ A + + + F G ++ G E G Sbjct: 174 PRVDIFVE--KDFEAV--TEMLGKKGIRTAAAVIDGGTEIKQFDF-GGGCAVVIGNEGRG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ E + + + ++ + SLN + A + +WE Sbjct: 229 LSQEHVEMCSDRVTIKMYGHIDSLNAATAATIFLWEMTRR 268 >gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 255 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 103 VMILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 163 LSKTIDELKDNGFWVAGTAANNATDYRDL--------------QADMSLAIVIGSEGQGM 208 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I P+ SLN S A LM++E Sbjct: 209 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 246 >gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 I+L +P + N G +AR T+L L+ P +K + D+V V Sbjct: 6 IVLFEPLMPANTGNIART--ATGTNTKLDLIEPLGFKLDDKHVKRA--GLDYWDNVDITV 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL + T ++ + + + + + + + +FG+E GL Sbjct: 62 HKNLP--------AFMATLKDTDELFLISKFAKKSYHQADYTNTDHDYYFLFGKETTGLP 113 Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + + + P N SLN+S ++++E + + E + Sbjct: 114 EPFMKEHPDQALRIPQNDEHIRSLNLSNTAAIIIYEVLRQQSFPNLDLTHEYDY 167 >gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 441 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 13/171 (7%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-S 60 +P ++ GPV++L N+G + R+ F +V R+ + + Sbjct: 282 SPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACC-VIVQDRNAPEESGTMAKA 340 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A + +RV + I T A + V+ L+ + Sbjct: 341 ASGALDRLPMLRVVN-----------IARTLAALKAADLWVVGLDAEGAPLSGPALGKRR 389 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E GL + I+S + SLN+S A + ++E N Sbjct: 390 VALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440 >gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 245 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R L + R ++ +S A + RV + Sbjct: 97 ILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLA 156 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E ++ T A +++++S+ + ++ G E G++ Sbjct: 157 RTIDELKERGVWVAGTDASAQDDYRSL--------------DGTMPLALVIGSEGKGISR 202 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + + P+ SLN S A L+++E E Sbjct: 203 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245 >gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 167 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 5/157 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ N G + R N QL L+ P +K + +++ + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + L K N G ++FG E GL + Sbjct: 63 YNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDY--LMFGPETRGLPSYV 120 Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S V ++V+E Sbjct: 121 LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQ 157 >gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 157 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 17/163 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L PQ+ N G + R N L L++P ++ + +D Sbjct: 4 IALYQPQIAPNTGNIIRLCANTG-AVLHLIHPLGFAWDDRRLRRAG-----LDYAE---- 53 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133 + + T N ++ + L + S ++V ++FG E GL Sbjct: 54 FADIRHHDDWAAFTADIAGRNIWALTT--KGTRSLYDATISAEDV-LLFGSETAGLPPFI 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + E+ + I P+ P SLN+S AV ++++E + ++ + Sbjct: 111 HAELENTQKI-RLPMRPTSRSLNLSNAVAVVLYEAIRQNLRAK 152 >gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella denitrificans ATCC 33394] Length = 248 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 23/181 (12%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + + + + P +LV N+G R + ++ P+D + Sbjct: 84 HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A + + V + L+E ++ T + P Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLFHYDIP------------ 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++V + G E G+ +A++S P+ S+NIS + +++ E I + Sbjct: 190 --ESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRITAQ 247 Query: 177 E 177 + Sbjct: 248 Q 248 >gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602] Length = 271 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R + +V PRD + A+ ++ Sbjct: 110 PALLESLDCPFLLVLDGVTDPHNLGACLRTADAAGVHA-VIV-PRDRSAKLNATAKKVAS 167 Query: 63 NADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A +I+ + L+ +I T EA L + +G Sbjct: 168 GAAENVPLINVTNLARTLRVLQEHNVWIVGTAG-------------EADHDLFQSKMTG- 213 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 214 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLKK 270 >gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13] Length = 231 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ V WP+ + R+ SA +V+ + +A+ Sbjct: 30 PHNVSAIIRTADAVGVHQVHAV-----WPTSRMRTLVSSAAGSNSWVNVKTHRTISDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 T +++ A+ E + + ++ G+E+ G+T E +AL++ Sbjct: 84 -------THLKDQGMQILATHLSARAVDFRE-VDYTRPTCVLLGQEKTGITEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ + SLN+S A L+++E + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRHNAG 169 >gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576] Length = 262 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262 >gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis Il1403] gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis Il1403] gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp. lactis KF147] gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 169 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 I L +P++ N G +AR N T L L+ P S+K + D V + Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIVYH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL + + ++ + V E + ++ +FGRE GL Sbjct: 61 KNLDDFMNSIN--------DGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPE 112 Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 E + + I P+N SLN+S ++V+E ++ Sbjct: 113 EFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152 >gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 165 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 22/171 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 ++LV P++ N G R T L L+ P E+ + + V V Sbjct: 5 VVLVHPEIHWNTGNAGRTCLATGAT-LHLIEPLGFSLGEREVRRA--GLDYWEHVDVRVW 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + L + K + + + ++ +IFGRE G Sbjct: 62 PDWDTFEAQLPTL------------GEPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAG 109 Query: 132 LTNEEIAL-SNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 L ++ +++ P +P SLN+S +V + ++E + S + Sbjct: 110 LPEPVRTRWAHRMVAMPITSPHVRSLNLSTSVAVAIYERLRQQHRRSPGSP 160 >gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413] gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC 29413] Length = 327 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q ++ +I+ N+G + R L + R + +A A Sbjct: 159 QAKSVTDPVIIVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA-- 216 Query: 67 VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +++ RV NL A+ DL +IY T A +V Sbjct: 217 -LENFPVARVV-NLSRALEDLKEAGFWIYGTAAGGSEPLHTVSFR--------------G 260 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E GL+ + ++S P+ PSLN S A + ++E +++ Sbjct: 261 PIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 317 >gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter ethanolicus JW 200] Length = 247 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A + +V SN+ Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I L +I T A E + + I+ G E G++ Sbjct: 159 NNTIRGLKERGLWIVGT--------------DVNAGKSFEELDYDFPLAIVIGSEGKGVS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ P+ SLN S A +++++ Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter wiegelii Rt8.B1] Length = 247 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + R + +SA A + +V SN+ Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 I L +I T A E + + I+ G E G++ Sbjct: 159 NNTIRGLKERGLWIVGT--------------DVNAGKSFEELDYDFPLAIVIGSEGKGVS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ P+ SLN S A +++++ Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239 >gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 170 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 29/176 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWDHVKLVK 60 Query: 75 ----SNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + +A+ +Y + N++ + + + +FG+E Sbjct: 61 HPGLPDFLDTLAETDNLYLVSKFANQDYTQP------------NYAQNDTDNYFLFGKET 108 Query: 130 WGLTNEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL E+ + I P + SLN+S V ++++E + S+ + Sbjct: 109 TGLP--EVFMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTH 162 >gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC61] gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. C56-T3] gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y412MC52] Length = 246 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R L + R ++ +S A + RV + Sbjct: 98 ILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLA 157 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E ++ T A +++++S+ + ++ G E G++ Sbjct: 158 RTIDELKERGVWVAGTDASAQDDYRSL--------------DGTMPLALVIGSEGKGISR 203 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + + P+ SLN S A L+++E E Sbjct: 204 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 246 >gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana] Length = 210 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 33/149 (22%) Query: 28 IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI------ 81 +G +AR+ F +T+L LV G A S +A + R F +L EA Sbjct: 7 VGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHSLIEARNYLKEE 60 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D + + A +NE F +N + G E GL+ +E + + Sbjct: 61 KDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGSGLSAKEYEICD 106 Query: 142 AIISFPVNPLFP----SLNISQAVLLMVW 166 + P + SLN++ A +++ Sbjct: 107 FFVYIP---QYGCGTASLNVTVAASIVLH 132 >gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 170 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 29/176 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWDHVKLVK 60 Query: 75 ----SNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + +A+ +Y + N++ + + + +FG+E Sbjct: 61 HPSLPDFLDTLAETDNLYLVSKFANQDYTQP------------NYAQNDTDNYFLFGKET 108 Query: 130 WGLTNEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL E+ + I P + SLN+S V ++++E + S+ + Sbjct: 109 TGLP--EVFMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTH 162 >gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 281 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 11/177 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ V +L + + N G V R + L + + K+ +S + Sbjct: 114 QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 173 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123 + + +A+ L R+ A + +E G Sbjct: 174 FHLPVAVGVP-VDQAVQGL--------RDAGVRILAADGAGADDLDDELDAGTMGTPTAW 224 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 IFG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 225 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281 >gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T] Length = 277 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 2 TPYAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 T P SA G I++ Q N+G + R + L S +A Sbjct: 105 TIAMPASTPSAPGDASLIVVDGVQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALR 164 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFS 117 + A V+ ++E + AR + LA +E A L E Sbjct: 165 AGMGAQFVVR-------IEE---GCELL----ARLESYPGLCLATALREDAHPLYELDLR 210 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G V +FG E GL+ +A ++ + P+ SLN++ A + ++E Sbjct: 211 G-PVAWLFGAEGQGLSPALLARADGCVIIPMTAGIESLNVAAAAAVCLFEQARQ 263 >gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2] gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2] Length = 243 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74 V+ L + Q N+G + R +F V + ++K SS A ++ V + Sbjct: 98 VVFLDNVQDPGNVGTIIRVAKSFGFDT---VVSNVNFYNDKVIRSSQGALFTVNLVNYNY 154 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLT 133 NL + +N FK + + V E++ F I+FG E G++ Sbjct: 155 DNLTNILLKY---------KQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +++ +I P+N F SLN++ ++++E + Sbjct: 206 SALADIADMLIYVPIN--FESLNVAICAGIVLYEANKA 241 >gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina ATCC 23134] Length = 246 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 PQL K P++ IL N G +AR + + + + S A +S+ A Sbjct: 88 PQLYEEGKTPLVLILDRLTDVRNFGAIARTAECAGIHAIVIPSRGSAQVSSDAMKTSSGA 147 Query: 65 DCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R +NL++ I L + T + + Sbjct: 148 LNYLPVCR-EANLEKTIEFLQESGLQIVACTEKTSETIYAPDYTV--------------- 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E G++ I ++ + P+ SLN+S A ++V+E + Sbjct: 192 PTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYEAVRQR 244 >gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides DSM 266] Length = 252 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 IL + NIG + R + L+ + + +SA A + +RV Sbjct: 107 ILQGLEDPHNIGAIIRTAEAVAADAVLLIEGKGSPVNATVHKASAGA---LSHMRVCKVK 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + LH R ++A A + I + + I+ G E GL E Sbjct: 164 SLVRCLEFLH--------ERKFL--IIAADMDAEINYTDIDLTKALAIVLGAEGSGLAPE 213 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + + P+ SLN+S ++++E M + Sbjct: 214 AVKFCDHTVRIPMAGCVESLNVSVTAGVLLYEAMRQRLA 252 >gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 149 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 13/154 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L P + +N+G R F + +L +V P ++A +A + + ++ Sbjct: 5 LFQPDIPQNVGACIRLSACFGV-ELHVVEPTGFRFDDRAMKRAALDYGPLSHMTRHADW- 62 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A R+R + +L A L++ +F + ++FG+E G + A Sbjct: 63 DAFQ----------RDRPAGRLILFTTRGATPLSDFVFHPDDT-LLFGKETSGAPDYVHA 111 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +A + P+ P SLN+S + +WE + + Sbjct: 112 AVDARVVIPLRPEARSLNLSVTAGIALWEGLRQT 145 >gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 254 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +I + Q N+G + R F ++ + +N + K +S + Sbjct: 105 KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGS-------- 156 Query: 73 VFSNLKEAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 I + I AT+ + + V A A L V + G E Sbjct: 157 --------IFHIPVIAATSQILLKLKQRGIKVFATYLKAQKLVHECNISDKVAFVLGNEA 208 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G++ + L + + P+ SLN+S A + ++E ++ Sbjct: 209 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 252 >gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca DW4/3-1] gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 6 PQLQNSAK-----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P L +AK V++L Q N+G + R+ + + R + + Sbjct: 98 PDLLEAAKASGRAPLVVVLDGIQDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKA 157 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A RV N+ A+ +L A + K L L Sbjct: 158 SAGAVEHCPIARVV-NISRALEELKEAGLWVAAADTHSKEPL----WGARL------DGP 206 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ G E G+ + + + P+ SLN S + ++++E S Sbjct: 207 LALVVGAEGAGVREGVLKHCDFRLGIPMVGQVGSLNASVSAAVLLYEVARQRGGSRPSGG 266 Query: 181 KEQNT 185 + + Sbjct: 267 RRGDQ 271 >gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87] gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87] Length = 268 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 23/175 (13%) Query: 4 YAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 +L S P+I LV P+ NIG + R N+ + + NP+ + SS Sbjct: 108 ALQKLNFSHNNPLI-LVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSS 166 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFS 117 VF+N TT+ + + A A + +I Sbjct: 167 VG--------CVFTN--------KIAIGTTSEIIKFLQHKNIAIYAAALQASEIYTKIDF 210 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E GL E + I P+N S+N+S A ++++E Sbjct: 211 TKASAIVVGTEATGLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIFEAKRQR 265 >gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17] gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17] Length = 154 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L +P++ N G + R N +L L+ P +K + + +V Sbjct: 4 VVLYEPEIPPNTGNIIRLCANTGC-KLHLIEPLGFTLEDKRMRRA--GLDYSEYASVKVH 60 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ T + + + V + ++FG E GL Sbjct: 61 KSYPAFLHSEQPQRLFGLTTKGSHYYHEV--------------SYQEGDYLMFGPETRGL 106 Query: 133 T---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ SLN+S L+V+E Sbjct: 107 PAPVRDALPDGHRL-RVPMCAHSRSLNLSNTAALVVYEAWRQ 147 >gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001] Length = 378 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 11/162 (6%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G +AR+ L L R + +A A + RV NL A+ L Sbjct: 78 PHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVV-NLNRALDSL 136 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + ++ + E ++ L + G V I+ G E GL + ++ Sbjct: 137 ---------KQEGYRVIGLASEGSVSLEQADLEGPLV-IVTGSEADGLAMLTRKHCDQLV 186 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 S P+ PSLN S A L+++E + K + Sbjct: 187 SIPLRGATPSLNASVATALLLYEVARRGWMKGLKGGQPAPRL 228 >gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC200] Length = 161 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + I L +P++ N G + R N +L L+ G+ E + A D Sbjct: 1 MVKGLNMISIALYEPEIPPNTGNIIRLCANVG-AKLHLIE-LFGFKLEDKQLRRAGLDYH 58 Query: 68 -IDSVRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++++ N E D I+A T + + + V + + Sbjct: 59 EFADLKIYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------IL 103 Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL + + L + P++ SLN+S +V ++++ Sbjct: 104 LFGPETRGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 147 >gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07] gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08] gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07] Length = 248 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + +SA A + +V + Sbjct: 100 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 158 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I T R + + A ++ +G +G++ G E +G++ Sbjct: 159 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 207 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ P+ SLN S A ++++E + S Sbjct: 208 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKS 247 >gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile QCD-23m63] Length = 245 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + +SA A + +V + Sbjct: 97 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 155 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I T R + + A ++ +G +G++ G E +G++ Sbjct: 156 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 204 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ P+ SLN S A ++++E + S Sbjct: 205 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKS 244 >gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 308 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + K+ +S + Sbjct: 137 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRASVGSL 196 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + +A+A L + A + ++ G +F Sbjct: 197 FHLPVAVGVP-VDQAVAGLKDA------GVRILAADGAGDDDLDDELDKGTMGGPTAWVF 249 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL E AL++A++ P++ SLN++ A + ++ S Sbjct: 250 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRASGG 301 >gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl] gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl] gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus J-10-fl] gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl] Length = 260 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 19/173 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 P+L G ++L Q N+G + R+ + L + P P + K ++ A Sbjct: 105 PELP-PRPGLRLVLDAIQDPGNVGTLLRSAAAAGVG-LVMCAPGTVDPFNPKVARAAMGA 162 Query: 65 DCVID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ V + ++ + A +A + + + Q + Sbjct: 163 HFLVPLRVSPWETIRAELQSYTVYAADSAGQQPYY---------------AVDWRQPAAL 207 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I G E GL+ AL++ I+ P++ SLN A ++++E + V+ Sbjct: 208 IVGNEAHGLSEPARALAHQTITIPMSGSIESLNAGVAGSIILFEALRQQTVAH 260 >gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani AFC27] Length = 259 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 36/167 (21%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEA 80 Q N+G R + +V P+D + AR ++ A I VRV Sbjct: 115 QDPHNLGACLRTAEAAGVHG--VVTPKDRAAGLTAVARKVASGAAERIPLVRVT------ 166 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRER 129 N + + A +E + L + G +G++ G E Sbjct: 167 ---------------NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAED 211 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL + ++ P+ SLN+S A + ++E + Sbjct: 212 RGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLLP 258 >gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101] gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium erythraeum IMS101] Length = 288 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 25/158 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS---VRVFSNLKEAI 81 N+G + R + L + R + +A A +++ RV NL A+ Sbjct: 145 PHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKVAAGA---LENFPVARVI-NLNSAL 200 Query: 82 ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +L +IY T A++ + K ++ ++ G E GL+ Sbjct: 201 EELKKEGFWIYGTVAKDGE---PIHTVKFTGAIV-----------LVVGSEGEGLSLLIQ 246 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +A++S P++ PSLN+S A + ++E Sbjct: 247 KNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSK 284 >gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes serotype 4b str. F2365] Length = 251 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + + R ++ +S A + VRV Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +I+ T A+ ++++++ + I+ G E +G++ Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 208 CLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244 >gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125] Length = 249 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R + + + R ++ +S A + VRV + Sbjct: 99 IVLDEVEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNL 158 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++ + T A+ +++ + ++ G E GL+ Sbjct: 159 ARTMEDLKKRGLWFIGTDAKGSEDYRG--------------AAYDMPIALVIGSEGKGLS 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 205 RLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEAYR 241 >gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 158 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 21/169 (12%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ +N G + R N + L L+ P ++K + + V+ Sbjct: 6 IVLHQPRIPQNTGNIGRLCFASN---SILHLIYPLGFHLTQKELKRA--GMDYWQHLEVY 60 Query: 75 S--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL+ ++ N L K N + G + FGRE GL Sbjct: 61 EWENLESF---------MSSSLLNLPHFYLTTKTQKPYYNANLSKGAY--LHFGREDAGL 109 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + A + P+ SLN++ +V ++++E + ++ Sbjct: 110 DTKILQAKQQDCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPLQDA 158 >gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88] gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88] Length = 245 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 19/163 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++IL + Q N G + R F + + + R + SS A + +V Sbjct: 96 ILILDEIQDPHNFGAIIRTAEVFGVDGIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNN 155 Query: 74 FSNLKEAIADLH-FIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + + + + +IY A +R + L + ++ G E G Sbjct: 156 INSTIDFLKENNIWIYGADMATDRYIYSENL---------------KGPIALVVGSEGKG 200 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ + ++ P++ SLN S A ++++E + Sbjct: 201 ISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQRLE 243 >gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 162 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 29/166 (17%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80 P++ N G R +L LV P G+ E A A D + V V L++A Sbjct: 16 PEIPGNTGNAIRLAAVTG-AELHLVEPL-GFNFEDAHLRRAGLDYHDLAVVTVHKTLQDA 73 Query: 81 IADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + F + TTA ++FG E GL + Sbjct: 74 WKAMMPARVFAFTTTAATSYADLEYRD----------------GDVLMFGPESVGLP-AD 116 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I+ P+ P SLN++ + + ++E + K Sbjct: 117 VQQ-DEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQHGFTGGK 161 >gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera] gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera] Length = 217 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 32/159 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G +AR+ +++L LV R + S + S+++ R F + Sbjct: 7 VVVHNIAKRHNVGTLARSASALGVSELILVG-RRDFNSFGSHGSTSHLRF-----RHFHS 60 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L +A D + + A+ +N+ F ++ + G E G Sbjct: 61 LLDARHFLKEKDCDICG-------------VEITDNAVAVNQHPFK-RSTAFLLGNEGTG 106 Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166 L+ +E + + + P + SLN++ A +++ Sbjct: 107 LSVKECEICDFFVYIP---QYGGGTASLNVTVAASIVLH 142 >gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum CFBP2957] gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CFBP2957] Length = 263 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 17/173 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K ++ A Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166 Query: 68 IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V + A LH + AT++ R+ V G+ VG +FG Sbjct: 167 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E G++ + +++ IS P SLN++ A + ++E + V + Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQRTVKGPRG 263 >gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44] Length = 232 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 84 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTAAVAKASTGAIEYIPVARVTNLS 143 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +I T AR + +++ + +G++ G E G++ Sbjct: 144 RTIDDLKERGLWIAGTDARGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 189 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 190 IIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYR 225 >gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 210 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 72/172 (41%), Gaps = 13/172 (7%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANA 64 ++ + +++ VD N + R + ++ + G +A S +AN Sbjct: 18 EVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAANR 77 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I+ RV+ ++AI ++ + R N + V+ + + I + ++ Sbjct: 78 WLFIE--RVYDR-EKAIKEI--------KERENLQVVVTWLDESSKDFREINYTKPTLLV 126 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G++ + + L++ I P+ + SLN+S A ++++E + + Sbjct: 127 VGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKG 178 >gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 228 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 20/156 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82 N+ + R+ + V WP ++ + S + ++ + N+ +A+ Sbjct: 31 HNLSAIVRSADAVGCHHVHAV-----WPEKQKWLTNNTSGGSKNWLE-THLHRNIDDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 T R RN +LA E A+ E + + II G+E+ G++ + + + Sbjct: 84 -------TAMRERNPEIQILATHLSEDAVDFRE-VDYTKPTAIIVGQEKTGISEKALEYA 135 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A L+++E ++ Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171 >gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense DSM 5692] Length = 202 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 19/177 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ F + + L+ + +P+ R+S++ V R EA+A Sbjct: 40 PHNVAAIMRSCDAFGVPDVHLLYTSEAFPALGRRASASARKWV---GRHHHTSSEALAG- 95 Query: 85 HFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 H R++ +L+ +A L E F+ I+ G E G+ + + Sbjct: 96 HL--------RDHGMRILSTSCSPSARPLPEWEFT-SPTAIVLGNEHRGVDPALRSHIDG 146 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 + P+ + S N+S A ++++E + + EL + Sbjct: 147 ELFIPMQGMVQSFNVSVAAAIILYEAWRQRNRHGLYDHPSYSP----EELETRYQQW 199 >gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2] Length = 284 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L + P I+L+ N+G + R+ F + V + +++ A Sbjct: 128 ALGDGPMPPRIVLLDRVTDPHNVGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGAL 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122 +RV NL +A+ L + VL A + E G+ V Sbjct: 188 ERQPYLRV-RNLADAMEAL----------KGMGYLVLGLDGEADLTVEAAVEGKRDRPVA 236 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + N ++ F SLN+S A + ++ Sbjct: 237 LVMGAEGPGLREKTRETCNELVKIDAAAGFGSLNVSNAAAVALY 280 >gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 261 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 24/179 (13%) Query: 5 APQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 APQ Q + I+L Q N+G + R N+ L + K +S Sbjct: 97 APQSQTNFLKITTLGIVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRAS 156 Query: 62 ANADCVIDSVRVFSNLK-EAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A + + NLK E + L + AT + N+ + K Sbjct: 157 AGEWFNLHKA-ISENLKNEILKLQSQGLQ-VLATVPNSNINYWEIDLRK----------- 203 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E G++ + I L++ + P++ SLN++ + ++++E + Sbjct: 204 ---PTIIVLGNEGSGISKDLIDLADYSVKIPLSNGVESLNVAVSAAIILYEIQRQRQLE 259 >gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 249 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 23/163 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVI 68 ++L + N V R+ L + +V P G AR S + Sbjct: 39 ITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH--RYQ 96 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 D S L+E + + I ATT P ++E + FG E Sbjct: 97 DPRVAVSRLRE---EGYRIIATT--------PHRTP----TPVDEFDVTRGKCAFFFGGE 141 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL++ + ++ ++ P+ SLNIS +++ ++ Sbjct: 142 LPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQR 184 >gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Paulinella chromatophora] Length = 526 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ L L R+ + +A A + RV + +L + + Sbjct: 295 PHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSL-DIL 353 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D ++ V E + L E +G V I+ G E GL+ + Sbjct: 354 KD------------KGYRIVGLATEGDVSLTEADLNGPLV-IVTGSEGNGLSLLTRRYCD 400 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191 +I P+ PSLN S A LM++E + + + V + P+ G+ Sbjct: 401 QLIRIPLRGATPSLNASVASALMLYEVARRTWMKDLGGQSPVPQMVRPSIAGQ 453 >gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus oleovorans Hxd3] Length = 256 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 17/164 (10%) Query: 17 IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ILV N+G +AR + L + P+ A +SA A + R Sbjct: 102 FILVADGLTDPHNLGALARTALCAGVHGLIIPKDNAASPTPAAVKASAGALEFLPVARET 161 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + +A+ D A + +++ + ++ G E G+ Sbjct: 162 NIARVLDALKDAGLWIA--GLDGRGEQTIYDSDLTGPL-----------ALVVGDEGRGI 208 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+S P + SLN S A + ++E + Sbjct: 209 RRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMYEAFRQRRAKA 252 >gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264] gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis E264] Length = 281 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L ++L Q N+G + R+ + Q P + S K S+ Sbjct: 123 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 181 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G V Sbjct: 182 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 227 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 228 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 281 >gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma proteobacterium IMCC2047] Length = 244 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 20/173 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L+ ++ V++L N+G R+ +T +V P+D + ++ A Sbjct: 87 LEEVSQPLVLVLDGVTDTHNLGACLRSADAAGVT--AVVVPKDNSADLNSVVSKVASGAA 144 Query: 66 CVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V+V +NL +A+ D TA + ++ L E +G V Sbjct: 145 ETLPFVKV-TNLARTMKAMQDRGLWITGTAVDESSRP-----------LYEADLTGPRV- 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E G+ + ++ P+ SLN+S A + ++E + + S Sbjct: 192 IVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAVRQRVKS 244 >gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T] Length = 251 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 23/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70 +++L Q N+G R +V P+D + A ++ A + Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAH--AVVAPKDRAVGLNATAVKVASGAADTVPY 158 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V +NL A+ ++ ++ A + V + G Sbjct: 159 ITV-TNLARALREMQDAGVWVVGAAG--------------EAEKTLYGVDQKVPVAWVLG 203 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + + P++ SLN+S A + ++E Sbjct: 204 AEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQR 249 >gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b] gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1710b] Length = 281 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 16/169 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L G ++L Q N+G + R+ + + P + S K S+ Sbjct: 123 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 181 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 182 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 227 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 228 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 276 >gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM 11300] Length = 246 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 17/171 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 +++L N G + R+ + + R S ++A A + + Sbjct: 90 IVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVVKTAAGATSYLPVAQTKN 149 Query: 74 FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ D +IY A R V ++ G E GL Sbjct: 150 LPRLIDALKEDGVWIYGAAG--------------EAAQDIGRTDLSGKVALVIGAEGEGL 195 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 +A++ P SLN S A ++++E + KN +Q Sbjct: 196 RRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARDKNKSKNKGKQ 246 >gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240013] Length = 250 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + ++ A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588] Length = 175 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V+IL + + N+G V R F L + L P + ++ A ++ + Sbjct: 18 TPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGATETVEW-Q 76 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 F+ EA+A L T S++ + S + + +IFG E G+ Sbjct: 77 YFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIP-------ASDKPLALIFGNEVSGV 129 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E + + I P + + SLNIS + ++VW+ Sbjct: 130 DAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVWDIF 166 >gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501] gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri A1501] gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 23/180 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + A+GP ++LV N+G R L ++ P+D + R + Sbjct: 88 ELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLNATVRKVAC 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A VI V V + L++ ++ T EA L + +G Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAG-------------EAEQSLYAQDLTGP 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 V ++ G E G+ + ++ P+ SLN+S A + ++E + + + Sbjct: 193 IV-LVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRGRGAATD 251 >gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1] Length = 196 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F + Q+ L +PS ++S++ A +D+VR Sbjct: 22 KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPSLSGKTSAS-ARKWVDTVR 80 Query: 73 V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L + A H + AT+ +P + + + II G E Sbjct: 81 HQDRDSLMSTLRASGHQVLATS----------CSPVAKPVADYDLT---RPTAIIMGNEH 127 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 G++ E + + + + P+ + S N+S A +++ E +V+ + T Sbjct: 128 SGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVAG----MYAKSTYTD 183 Query: 190 GELLSFLDYLEI 201 E + L Sbjct: 184 EEFEARLAQWIE 195 >gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 266 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 18/170 (10%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 +P AP Q + ++L D Q N+G + R + + L S K + Sbjct: 109 SPEAPPAQAAR----VMLEDIQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAG 164 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + ++L + +R + ++ E + L +G V Sbjct: 165 MGAHFAL-RIHEHADLAGEL------------SRFGGRKLVTHLEGSSSLYGHDLTG-PV 210 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E G+++ +AL++A I P+ SLN++ A + ++E + Sbjct: 211 AFVFGNEGAGVSDALLALADARIRIPMPGHAESLNVAMAATVCLFERVRQ 260 >gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter hydrossis DSM 1100] Length = 247 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 12/168 (7%) Query: 6 PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + + + P+I+L+ N G +AR+ F L + + + + +A +SA A Sbjct: 89 PSVFENGQNPLIVLLDGITDVRNFGAIARSAEVFGAHALVISSKKSAQVNAEAVKTSAGA 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I R ++ AI L V AA + V ++ Sbjct: 149 LTLIPVCR-EKSMVGAIELLKLS----------GVKVYVSDLAATASIAALDWTIPVALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+T AL++ P SLN S A ++++E Sbjct: 198 IGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYEATRQR 245 >gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 259 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V P+D + AR + A + +RV + Sbjct: 111 ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 168 Query: 76 NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A T R ++N V EA + + +G + ++ G E G+ Sbjct: 169 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 215 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +IS P+ SLN+S A + ++E + + + Sbjct: 216 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 259 >gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335] Length = 213 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 20/183 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSANADCVIDS--VRVFSNLKE 79 NIG + R + + + +V+P+ P + + R+ S + I V+ F + Sbjct: 38 NIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKRALSKTSVSAIKWSFVKRFDSTAA 97 Query: 80 AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L T+ L ++ A++ + + FG E G+++ Sbjct: 98 CIDHLEQNRFVSIVTS--------PHLKGRKNAVLDEADYTIYTKLAVWFGNESMGISDL 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 + S+ +S P+ + SLN+ ++++E + + + +N K Sbjct: 150 AVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQR-REYQHQYRWRNNRGPKLNNERS 208 Query: 196 LDY 198 LD+ Sbjct: 209 LDH 211 >gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC 19707] gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 274 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 36/167 (21%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEA 80 Q N+G R + +V P+D + AR ++ A I VRV Sbjct: 130 QDPHNLGACLRTAEAAGVHG--VVTPKDRAAGLTAVARKVASGAAERIPLVRVT------ 181 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRER 129 N + + A +E + L + G +G++ G E Sbjct: 182 ---------------NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAED 226 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL + ++ P+ SLN+S A + ++E + Sbjct: 227 RGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLLP 273 >gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1] gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1] Length = 154 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 23/167 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P++ N G R + L LV P SE + + SV V ++ Sbjct: 4 VLFYSPRIAPNTGNAIRMVAGTGCA-LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L A + L ++A TA A + ++FG E GL Sbjct: 63 LGAAWSALMPARVFAFTA--------------HAATSFAGVGYEPGDVLMFGPEPTGL-- 106 Query: 135 EEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +E+ L++ I+ P+ SLN+S A + V+E + Sbjct: 107 DELTLADPHITEQVRIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGA 153 >gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas manganoxydans SI85-9A1] Length = 284 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 11/156 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+L N+G + R+ F L S +++ A + + V Sbjct: 138 VIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEHVTQIEVV- 196 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL +A+ +A ++ F+++ E SG+ + I+ G E GL + Sbjct: 197 NLADAL---------SALSKQGFRTI-GLDSDGPESFEASLSGERIAIVLGAEGKGLRQK 246 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 A +A+ + SLN+S A + ++ + Sbjct: 247 TQATVDALARLEMPGAIRSLNVSNAAAIALYATRRH 282 >gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 168 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 22/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + N ++L NIG + R F++ ++ S + + +S + Sbjct: 9 KFSNKKFPVTLVLDHISGEANIGSIFRLSDAFHVEEIIFCGTEPNLNSNRLKKTSRSTHE 68 Query: 67 VID-------SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + + + EA + I A + L + + Sbjct: 69 YVKFQFSENPTAIIKGKKAEAYS----IIALEITQNSVPIQQL-----------ELKPSE 113 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V +I G E +G++ + + L ++I+ P+ S+N++QA+ + ++E + Sbjct: 114 KVVLIAGHENFGISEDLLRLCDSIVHIPMFGNNSSMNVAQAIGISLYEITK 164 >gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 250 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83 N+ V R+ + ++ V W + K R +A + +++ +A+ Sbjct: 30 PHNVSAVLRSCDAVGINRIHGV-----WDQKTKIRKGTAMGSEHWVKTEMHTSIGDAV-- 82 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + + N + ++ V I Q II G+E+ G T E IA+++ Sbjct: 83 -------SVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAIAVADKN 135 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 I P+ + SLN+S A ++++E V+ N + + Sbjct: 136 IVIPMVGMVQSLNVSVAAAVVLYEAQRQREVAGMYNSLQLSE 177 >gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803] gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803] Length = 274 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 29/171 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV------ 71 +L Q N+G + R + + L S K SSA + ++ Sbjct: 124 VLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLPQQQLQSLP 183 Query: 72 ---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F L AT A I + +IFG E Sbjct: 184 PLLEKFHT-----QGLQL-IAT--------------VPQATQTLWEIDFQRPTIVIFGSE 223 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 GL+ + L+ ++ P P SLN++ AV +M++E +S Sbjct: 224 GQGLSAPVLELTTHQVAIPQAPQVESLNVAIAVGVMLYEARRQQWAASTPG 274 >gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 253 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 23/166 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAV-T 157 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL A+ L ++ T EA + L ++ +G + II G E G Sbjct: 158 NLARALEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKG 203 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + ++ P+ SLN+S A + ++E + V + Sbjct: 204 MRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249 >gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b] gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b] Length = 359 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 14/164 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67 Q AK V+ L D N+G + R+ +F + L LVN S A ++ A+ V Sbjct: 207 QAEAKDCVLALEDVSNPHNLGGIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 265 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +AI+ F A + + V L + + V ++ G+ Sbjct: 266 -----------QAISGESFSAGLEAFRKAGYTIVTTSSHEGTPLAKAELPAKMV-LVLGQ 313 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ER GL++ + +S SLN+S A +++ E Sbjct: 314 EREGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEWWRQ 357 >gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 249 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 21/156 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ F + + + P+ + + V Sbjct: 102 ILDEITDPHNLGAIIRSAEAFGVHGIII--PK---------RRAVGV-----NATVVKTS 145 Query: 78 KEAIADLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ + T RN + ++ E I V ++ G E G+ Sbjct: 146 AGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNGGKSFEEIDYDFPVALVIGNEGKGV 205 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + + ++ P+ SLN S A L+V++ Sbjct: 206 SKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQV 241 >gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547] gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM 20547] Length = 323 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 10/156 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L N+G + R+ F + + R + A +SA A + RV +N Sbjct: 173 VALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARV-TN 231 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ +L R++ F L + L + + ++ G E G++ Sbjct: 232 LNRALQEL--------RSQGIFVIGLDADGD-VELPGLPLAPDPLVVVVGSEGKGISRLT 282 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+S P+ SLN A + ++E Sbjct: 283 REHCDQIVSIPMTAGNESLNAGTAAAVTLYEIARER 318 >gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b] Length = 254 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 20/148 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N V R+ F + L +V R + + +AD +D V +++EAI L Sbjct: 68 PHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSII--AKSADRWVDVVE-HGSIEEAIDAL 124 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +YAT E + + ++FG E G++ + + Sbjct: 125 KESGYQVYATALSEEAIP-------------LEEVDVSKPTVLLFGNEHSGVSETALHKA 171 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 + P+ SLNIS A + +++ Sbjct: 172 DGNFVIPMQGYVQSLNISVAAAISLYDV 199 >gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 155 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 22/157 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRV 73 I L +P++ N G + R N +L L+ G+ E + A D +++ Sbjct: 2 ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIE-LFGFKLEDKQLRRAGLDYHEFADLKI 59 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + N E D I+A T + + + V + ++FG E Sbjct: 60 YKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPETR 104 Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + L + P++ SLN+S +V ++++ Sbjct: 105 GLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141 >gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552] Length = 238 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 13/149 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL D Q NIG + R F++ Q+ L N ++K S A+ I+ ++ +L Sbjct: 100 ILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHIN--CIYDDL 157 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 K I+ L +NN K + + E + ++I + + I G E G+ + + Sbjct: 158 KTVISTL---------KKNNVKIIGSALENGQDI-KQIKISEKMAFIVGNEGNGMNKDIL 207 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + P+N SLN++ A +M++ Sbjct: 208 QECDYVGYIPIN-TIESLNVAIAGSIMMY 235 >gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 274 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 34/184 (18%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 + SAK I L + N+G + R + L+ S + S+ + Sbjct: 113 ETITESAKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRSTMGSI 172 Query: 65 ----------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + +D N K I H A R + ++ Sbjct: 173 FSIPLYRFNENAFLDWST---NFKGMIIGAHLQGAVDYRTIDFKGPII------------ 217 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E+ GL+N + + P N SLN++ A +M++E + + Sbjct: 218 --------LLMGNEQQGLSNALANRCHQLARIPQNGHADSLNLAIATAIMLYEIRRSDLT 269 Query: 175 SSEK 178 + Sbjct: 270 LEPR 273 >gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1] Length = 565 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R +F ++ + V S A ++ + L EA D Sbjct: 427 PHNIGAILRVAAHFGVSSIV-VRDASLARSGAALRTAEGGGEHVR-------LLEA-DDF 477 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + A R F V L V ++ G+E GL++ S+ I Sbjct: 478 SRMLAAC--RREGFTVVSTSSHEGTSLFAAPLP-ARVVLLIGQESTGLSSSLQEGSDLKI 534 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S P SLN+S A +++ E N + Sbjct: 535 SIPGTKNVESLNVSVAAGILLAEYWRNHASN 565 >gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 179 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 21/173 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P++ N G R + +L LV P SE + + SV V + Sbjct: 4 VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVRPLGFDLSEPKLRRAGLDYHDLASVTVHDD 62 Query: 77 LKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L A D +YA TA A V + ++FG E GL Sbjct: 63 LPAAW-DAVLPASVYAFTA--------------HATVSFADVDYRPGDVLMFGPEPTGLD 107 Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E +A + A + P+ SLN+S A + V+E + + Sbjct: 108 AETLADPHITAQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGGDIRPRGD 160 >gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC 25196] gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 249 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 23/178 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 + ++ P ++LV Q N+G R F + ++ P+D + ++ Sbjct: 87 DVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFGVH--AVIAPKDRAVGLTAAVHKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+ + T A A + Sbjct: 145 GAADNVPYISVTNLARTLRGLKQRGVTVLGTAA--------------DADTQLGVLQLAG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + G E G+ + ++S P+ SLN+S + + ++E Sbjct: 191 PIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHRQRYAPKA 248 >gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1] gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1] Length = 265 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 13/170 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P Q V++L + N+G + R LV R P ++ Sbjct: 104 PAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAG-VLVLGRGADPYGPNVIRAS 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++ A+ A N P A + + V Sbjct: 163 QGAVF--------SVPTAVLGEDAALGWLA-EHNFRTVACTPDAPADYWDTPLT--GRVA 211 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL E ++ + P++ SLN++ A L+++E + Sbjct: 212 LLLGTEHAGLP-AEWRAAHQAVRVPMHGQADSLNVATAAALVLYEALRQR 260 >gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L ++ GP ++LV N+G R ++ P+D + A ++ Sbjct: 82 ELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 139 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL + DL ++ TT E A + Sbjct: 140 GAAESVPYITV-TNLARTLRDLKDRGIWLIGTT--------------EDAEQTLYQGDFT 184 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +I G E G+ + ++ P+ SLN+S A + ++E +V Sbjct: 185 GPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQRLVKG 242 >gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 242 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 +N+G + RA F + + R + A + A ++ ++ V SNL E + Sbjct: 100 PQNLGAILRAAECFGVDAVIWSKNRGCSLTPSAAKAGVGASELVPTI-VVSNLAETVKKF 158 Query: 85 HFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +A TA + + A E+ +I G E G+ L++ Sbjct: 159 QKSGYFAVTAEISDRASPL-----NAFQFPEKTL------LIMGSEGKGIQPLISKLADE 207 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 + P++ SLN+SQA +++ Sbjct: 208 QVYIPMSGKIDSLNVSQATAVLL 230 >gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7] Length = 169 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 24/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I L +PQ+ N G +AR N T L L+ P +K + + V + Sbjct: 5 IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRA--GLDYWNEVHITYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLA---PKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL + A +N ++ + + V I +FG+E G Sbjct: 62 KNLAAFME-----VA-----KNGQLHLITKFGNRVYSDVDYAAIEEDHY--FLFGKETTG 109 Query: 132 LTNEEIALSNA--IISFPVNPLF-PSLNISQAVLLMVWECMENS 172 L EE + + P+N SLN+S ++++E + Sbjct: 110 LP-EEFMREHEEDCLRIPMNDEHVRSLNLSNTAAILIFEALRQQ 152 >gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 259 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V P+D + AR + A + +RV + Sbjct: 111 ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 168 Query: 76 NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A T R ++N V EA + + +G + ++ G E G+ Sbjct: 169 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 215 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +IS P+ SLN+S A + ++E + + + Sbjct: 216 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 259 >gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 219 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 14/172 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R + Q+ V P G S++A ++ + SV+ ++ A+++L Sbjct: 19 PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-SVKTHRDIASAVSEL 75 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + A V I + I+ G+E+ G++ E + L++ I Sbjct: 76 ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 126 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 P+ + SLN+S A L+++E + + E L Sbjct: 127 IIPMVGMVQSLNVSVASALILYEAQRQR--QQAGMYQHHQPRLSDEEQQRLL 176 >gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei ATCC 43380] Length = 246 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ + +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQENNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246 >gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 249 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA-NADCVIDS 70 K P+++L N+G + R+ F L +V R P + +A A ++ Sbjct: 99 KRPILVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARAASGALEIVPW 156 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 VRV NL A+ ++ + + EA + E I V ++ G E Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEADTTIGEAIGQ-SRVALVLGAEGE 205 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159 GL + IA + I P++P SLN+S Sbjct: 206 GLRHNSIAHCDIIAKLPISPRMESLNVSN 234 >gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium chlorophenolicum L-1] Length = 246 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDS 70 K PV++L N+G + R+ F L +V R P + ++ A ++ Sbjct: 99 KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 VRV NL A+ ++ + + EA L E I + V ++ G E Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGT-SRVALVLGAEGE 205 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159 GL + +A + + P++P SLN+S Sbjct: 206 GLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 286 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 15/182 (8%) Query: 8 LQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 ++ A+ ++++ + N G V R F + L + + K +S + Sbjct: 115 FEDIAEPRLVVICAQVRDPGNAGTVVRCADAFGADAVVLTHGSVDITNPKTVRASVGSIF 174 Query: 65 -DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +I V + ++ A A + A + ++ GQ Sbjct: 175 HLPIISGVELTGAIEWAHASGLQVLAADGSG-----------QPVDLMAGAGQLGQPTAW 223 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G E WGL ++ L++ + + P+ SLN+S A + ++ + E+ + Sbjct: 224 LMGNEAWGLPRHDLELADRVAAVPMWGAAESLNLSTAAAICLYATASAQRRAPEQQPNPE 283 Query: 184 NT 185 + Sbjct: 284 GS 285 >gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 243 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 21/153 (13%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSNLKEAIA 82 G+N + R F + ++ V + P+ A VR ++ EA+A Sbjct: 64 HGQNAAALIRHCEAFGVQEMHTVETLCPFEPNPDI----ARGTHQWVDVRRHASTGEAVA 119 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L I ATT + ++FG E G+++E IA Sbjct: 120 ALKGAGYRIVATTPHREDATPETFDVGR------------GPFALVFGTEHAGISDEVIA 167 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ + SLN+S + ++++ E Sbjct: 168 SADEFLRIPMCGMVESLNVSASAAILIYTLSER 200 >gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 298 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L + + N+G + R + + + R+ + S A + +V + Sbjct: 150 IIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKIAKV-T 208 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI +L + + V A + ++ ++ G E G++ Sbjct: 209 NINSAIDEL----------KESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKL 258 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ P+ SLN S A +M++E ++ ++ Sbjct: 259 TLKKCDKLVKIPMVGKINSLNASVAGGIMMYEILKGRLLK 298 >gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma proteobacterium HdN1] Length = 248 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 16/151 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G R+ + + + S R + A + ++V + L+ Sbjct: 110 PHNLGACLRSADAAGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVR 169 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ++Y T E A + E G N+GI+ G E GL + Sbjct: 170 QQGVWVYGTALS------------EGAKTIYETDLRG-NIGIVMGAEGVGLRRLTQDCCD 216 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN+S A + ++E + Sbjct: 217 GLVYIPMAGTVQSLNVSVATGVCLFEALRQR 247 >gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010] Length = 181 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 13/173 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + + K P V++L D + N+G V R+ F +T + L P+ + ++ Sbjct: 15 EEFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGG 74 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNV 121 + +D + F + ++AI LH ++ + + E + L + + Q+ Sbjct: 75 EDSVDW-KYFEHTEDAIKALH--------SQGYYVYCVEQVEGSTKLQNLQSTLDTTQHY 125 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 II G E G+ + LS+ + P SLN+S +++WE + + Sbjct: 126 AIIMGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWEFAKAYLE 178 >gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 155 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 29/166 (17%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80 P++ N G R +L LV P G+ E A A D + V V L++A Sbjct: 9 PEIPGNTGNAIRLAAVTG-AELHLVEPL-GFNFEDAHLRRAGLDYHDLAVVTVHKTLQDA 66 Query: 81 IADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + F + TTA ++FG E GL + Sbjct: 67 WKAMMPARVFAFTTTAATSYADLEYRD----------------GDVLMFGPESVGLP-AD 109 Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I+ P+ P SLN++ + + ++E + K Sbjct: 110 VQQ-DEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQHGFTGGK 154 >gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202] gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202] gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda FL6-60] Length = 219 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 14/172 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R + Q+ V P G S++A ++ + +V+ ++ A+ +L Sbjct: 19 PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-NVKTHRDIATAVGEL 75 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + A V I + I+ G+E+ G++ E + L++ I Sbjct: 76 ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 126 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196 P+ + SLN+S A L+++E + + + ++ E L Sbjct: 127 IIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYGRSQPSL--SEEEQQRLL 176 >gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 246 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246 >gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 255 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 16/159 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 ++L Q N+G + R + Q L+ P S K + A V+ ++ Sbjct: 112 AVLLDGVQDPGNVGTLLRTAAASGVKQ-VLMAPGCASAWSPKVLRAGQGAHFVL-AIHEE 169 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++L +AD TTA + IFG E G+ Sbjct: 170 ADLAAFMADYR---GTTA----------VTCLDGATSLYEARWTGPLAWIFGAEGLGVRR 216 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E I + I P+ SLN+ A + ++E + + Sbjct: 217 ELIETAKLRIKIPMPGAVESLNVGAAAAVCLFEALRRKL 255 >gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus S110] gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus S110] Length = 153 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 25/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+LV P++ N G V R N T L LV P ++ + + V Sbjct: 4 IVLVQPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRA--GLDYHEYAEVKRH 60 Query: 74 --FSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L EA ++A T R ++V + ++FG E Sbjct: 61 AGWQALLEAERPAAERMFALTTRG---TRAVHDVRFQPGDW-----------LVFGSETS 106 Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E + P+ SLN+S AV + V+E Sbjct: 107 GLPPAVREGFAEPQRLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149 >gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. CB0205] Length = 406 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 16/174 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ L L R + +A A + RV NL A+ L Sbjct: 176 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVV-NLNRALDSL 234 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++ + E ++ L+E G V ++ G E GL+ + ++ Sbjct: 235 ---------KNEGYRVIGLAGEGSVALSEADLDGPLV-VVTGSEGDGLSMLTRKHCDQLV 284 Query: 145 SFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPATKGELL 193 P+ PSLN S A ++++E M+ ++ + T L Sbjct: 285 RIPIRGATPSLNASVATAMVLYEVARRGWMKQISGAAPAPRIVRPQLPTPAPLE 338 >gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001] gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001] Length = 262 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 16/172 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 L ++ + I+L Q N+G + R+ + + P + S K S A Sbjct: 106 PLPDTVEETCIVLDGVQDAGNVGSILRSAAAAGIQR-VFCAPGTAYAWSSKVLRSGMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ ++ ++ A A ++ + + +F Sbjct: 165 FLL---QIHEDVDAA-----------ALIGRLAVPIVITDSHGAEAIDECDLSGELAWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E G++ + ++ P SLN++ A + ++E Sbjct: 211 GNEGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQQRARRA 262 >gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus infantis ATCC 700779] Length = 242 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 QTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ SG V + Sbjct: 148 HVPIARVTNLSQTLDKLKEEGFWTFGT--------------DMNGTPCHKWNTSG-KVAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 261 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 18/167 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165 Query: 71 VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ +L+ +A ++AT R A++ NE + + +FG Sbjct: 166 SEIYPQADLEIWLAHYKGRVFATALREEK----------QAVLYNEDLR--EPTTWVFGN 213 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + ++ + P++ SLN++ A + ++E M V Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAV 260 >gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018] Length = 252 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + + R+ + +SA A + +V S Sbjct: 102 ILVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKV-S 160 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI L + A + + +G + ++ G E G++ Sbjct: 161 NINLAIDKL---------KKEGIWVYGAEIDGENYCYNQNMTGA-LALVIGSEGRGISKL 210 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN S A ++++E ++ IV Sbjct: 211 TKQKCDVLVKIPMVGKVNSLNASVAAGIVMYEILKQRIVKRG 252 >gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8] Length = 257 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 21/168 (12%) Query: 10 NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + P II+ + + N+G + R + + R + +SA A + Sbjct: 104 DKGEDPFIIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWL 163 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV +NL A+ DL +IY T N + VG++ Sbjct: 164 PVARV-ANLPAAVDDLKKQGIWIYGTDGAGENYSGVDMR---------------GPVGLV 207 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E +G+ + ++S P+ SLN S A + ++E + Sbjct: 208 VGSEGFGMGRLMKEKCDFLLSLPMAGKITSLNASVAAGIFMYEVVRQR 255 >gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1002] Length = 247 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG--------------DAQKSVYETELD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + +++ P+ SLN+S A + ++E + V Sbjct: 190 GPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247 >gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii DSM 18315] Length = 179 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 1 MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +TP A ++S K P V++L + N+G V R F + + L P + Sbjct: 15 LTPEA--FKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 72 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-G 118 ++ A+ + F + +A+ L + + + E + +L++ + Sbjct: 73 TALGAEETVGW-EYFEDTMDAVDKL--------KQQGYTVCAVEQAEGSTMLDKLLLDKN 123 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I G E G+ + + I P SLN+S +++W+ + Sbjct: 124 KKYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQ 176 >gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V PRD + R + A V+ ++V + Sbjct: 104 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDKASGLTSVVRKVACGAAEVVPLIQVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+E +I T A + + ++ G E G+ Sbjct: 162 LARSLRELKDRGVWIVGTAG--------------EADHDVYQAKLTGPMALVMGAEGKGM 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247 >gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355] Length = 188 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ +V P+D + A+ ++ Sbjct: 30 PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG-AHAVIV-PKDRSAPLNATAKKVAS 87 Query: 63 NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV + L+ + + + ++ T A + Sbjct: 88 GAAENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVYQSKMT 132 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 133 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 186 >gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23 rrna gm2251 2'-o-methyltransferase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus asymbiotica] Length = 245 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L + P +++L N+G R+ + ++ PRD + A+ + Sbjct: 86 PDLLAKVETPFLLVLDGVTDPHNLGACLRSADAAGVH--VVIVPRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + VRV + L+ ++ T A + Sbjct: 144 GAAESVPLVRVTNLARTLRVLQEHNIWVVGTAG--------------EADHTLYQSKLTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 PIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEAVRQR 242 >gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P +L + K I L D N+G + R+ + + L +P +A S Sbjct: 112 PDPKELLANTKRIAI-LEDVMNPTNVGAIFRSAAALGVEAVFLTHPSADPFYRRAARVSM 170 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNE-RIFSGQN 120 + + D +I A ++ FK V +A KE AI L+ + + Sbjct: 171 GTVFQVPWTYFY-------KDSDYIGAL---HQAGFKVVSMALKENAIPLSAPELKNQDK 220 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + I+FG E G+ ++ I+ S+ + P+ SLN++ A + WE Sbjct: 221 LAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268 >gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava NJ9703] Length = 249 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P +++L N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P +V Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SV 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ SEK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249 >gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 344 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 11/164 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ L Q N+G +AR ++ L +V A ++A A Sbjct: 176 RDAPDAPLPLIVALDQVQDPGNVGTLARTLYALGAAGLVVVRHGGAALGGAAARAAAGAL 235 Query: 66 CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +V +NL A+ A A A + K P+ Sbjct: 236 EKLPVAKV-TNLARALDEADEAGYTIYAAGGAAPETDGKPGSGPRNPFTEPLRT-----P 289 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ G E G+ + +S P+ F SLN++QA ++ Sbjct: 290 AVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGAIL 333 >gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda ATCC 23685] Length = 228 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 21/177 (11%) Query: 6 PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 P L S P IL N+G R+ + +V PRD + A+ + Sbjct: 67 PDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGI-DAVIV-PRDRSAQLNATAKKVA 124 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + A T R N + EA L + +G Sbjct: 125 CGAAESVPLIRVTN------------LARTMRLLQEENIWIIGTAGEADHSLYQSKMAGA 172 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 173 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAAR 228 >gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor NM305] Length = 246 Score = 62.8 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 20/173 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + + ++IL N+G R + +V P+D + AR + A Sbjct: 89 LASKPQPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R ++N V EA + + +G + Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNVWIVGTAGEATSSIYDAKLTGA-IA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQKLST 246 >gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM 10] gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua] gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516] gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides F] gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125] gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Angola] gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1] gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92] gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003] gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10] gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001] gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953] gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516] gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua] gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92] gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F] gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125] gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis IP 31758] gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis Angola] gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. IP275] gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. F1991016] gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. E1979001] gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis YPIII] gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pseudotuberculosis PB1/+] gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516] gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A] gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004] gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038] gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM D27] gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003] gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 246 Score = 62.8 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRGLKA 246 >gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 268 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 20/171 (11%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ + V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 S + ++ + + + + A T + + +L + Sbjct: 167 SMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALTDDSISIDHPIL-------------AAE 213 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL+ + IA ++ ++ P+ SLN++ A + W+ Sbjct: 214 PRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAAAVAFWQLR 264 >gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 198 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 13/172 (7%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANA 64 ++ + ++ VD N + R + ++ + G +A S +AN Sbjct: 6 EVLQKRQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAANR 65 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I+ RV+ ++AI +L + R N + V+ + + I + ++ Sbjct: 66 WLFIE--RVYDR-EKAIKEL--------KERENLQVVVTWLDESSKDFREIDYTKPTLLV 114 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G++ + + L++ I P+ + SLN+S A ++++E + + Sbjct: 115 VGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKG 166 >gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 262 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 16/169 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC 66 + + G ++L + Q N+G + R+ + + +P + S K + A Sbjct: 109 MPVALAGSAVLLDNLQDPGNMGSILRSAAAAGI-EYVFCSPGTAFAWSPKVLRAGMGAHF 167 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ ++F N+ +A++ RN VLA I Q V +FG Sbjct: 168 LL---KIFENVD--LAEVV---------RNASVPVLATSSHVAQRVYDIDLTQPVAWLFG 213 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G+ + +AL+ ++ P SLN++ + +E + Sbjct: 214 HEGQGVEEQLLALATHQVAIPHIGAMESLNVAACAAVCFFEQVRQRSAG 262 >gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia enterocolitica W22703] Length = 246 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P++ +L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVETPLLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALQA 246 >gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis EO147] gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia oklahomensis C6786] Length = 262 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 17/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L ++L Q N+G + R+ + Q P + S K S+ Sbjct: 104 APALPERVVDTSVVLDGVQDAGNVGSILRSAAAAGVQQ-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ D+ + V + V Sbjct: 163 AHFLLD---IHEDV-----DVDTLI------ERLAVPVALTDSHGARAIDDCDLSGPVVW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176 +FG E G++ + ++ P SLN++ A + ++E C + + + Sbjct: 209 VFGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAICLFEQCRQQRVRGA 262 >gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 247 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 21/177 (11%) Query: 6 PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 P L + P IL N+G R+ + +V PRD + A+ + Sbjct: 86 PDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAGV-DAVIV-PRDRSAQLNATAKKVA 143 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + A T R + N V EA L + +G Sbjct: 144 CGAAENVPLIRVTN------------LARTIRLLQQENIWIVGTAGEADHSLYQSRMTGA 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRSAKA 247 >gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 249 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 +IL + N+G + R + + + R ++ +SA A + VRV + Sbjct: 100 VILDGLEDPHNLGSILRTADAAGVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNL 159 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + ++I T A N +++ + + + I+ G E G++ Sbjct: 160 SQTMDQLKDEGYWIAGTAADNATDYRQM--------------AADMPLAIVIGNEGHGMS 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + I P+ SLN S A LM++E + E Sbjct: 206 RLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIYRKRHPAGE 249 >gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 249 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A I +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + ++I T A N +++ + +G +GI+ G E G+ Sbjct: 157 LANTIETLKDNGYWIVGTEAENSTDYREM--------------DAGMPLGIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I+ P+ SLN S A LM++E Sbjct: 203 SRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYEVFR 240 >gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 21/179 (11%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ +D + + + + +++ Sbjct: 24 VLVEAVNKPHNLSAILRTCDAAGVFEANFISEKDKVKTFNSTAQGSQKWVKLNN---HET 80 Query: 77 LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+++L +Y TT R+ E N + G E+WGL Sbjct: 81 TISAVSELKKKGFKLYGTTLNERSTDYRNFDYSE-------------NTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 +++ I+ + I P++ + SLN+S A ++++E + S +K + A + E Sbjct: 128 SDQLISKVDESIFIPMSGMVQSLNVSVATSILLFEAIRQRKSKSLLPLKGEGLSAEEYE 186 >gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 256 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83 N+ V R+ + ++ V W + K R +A + +++ +A+ Sbjct: 36 PHNVSAVLRSCDAVGINRIHGV-----WDQKTKIRKGTAMGSEHWVKTEMHTSIGDAV-- 88 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + + N + ++ V I Q II G+E+ G T E IA+++ Sbjct: 89 -------SVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAIAVADKN 141 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 I P+ + SLN+S A ++++E V+ N + + Sbjct: 142 IVIPMVGMVQSLNVSVAAAVVLYEAQRQREVAGMYNSLQLSE 183 >gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia kristensenii ATCC 33638] Length = 246 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALK 245 >gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri ATCC 29473] Length = 248 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PGLLASVESPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + L+ + +I T A + Sbjct: 144 GAAENVPLIRVTNLARTLRVLQENNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + +++ Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRSLNA 246 >gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594] gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594] Length = 152 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+LV P++ N G V R ++ +L L++P +K S +R+ Sbjct: 3 AIVLVHPEIPGNTGAVGRTCVALDM-ELVLIHPLGFAIDDKRVKRS--GLDYWPHIRLVE 59 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A A + +E A ++ ++FGRE GL Sbjct: 60 --------CASWDAFLAERAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQG 111 Query: 136 EIALSNA--IISFPV-NPLFPSLNISQAVLLMVWECMENSI 173 +A ++ ++S P+ + SLN++ V ++ M + Sbjct: 112 IVA-AHRAQMVSLPMRSDKVRSLNLANTVAAAAYQAMRGQL 151 >gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 246 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDS 70 K PV++L N+G + R+ F L +V R P + ++ A ++ Sbjct: 99 KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 VRV NL A+ ++ + + EA L E I + V ++ G E Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGT-SRVALVLGAEGE 205 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159 GL + +A + + P++P SLN+S Sbjct: 206 GLRHNSMAHCDILAKLPISPRMESLNVSN 234 >gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 364 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 72/178 (40%), Gaps = 18/178 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARS-SSANADCVIDS 70 +++L + + N+G + R+ ++ + PR G + + S+ A+ V+ + Sbjct: 184 PLILVLDNLRSAANVGSIFRSADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVV-A 242 Query: 71 VRVFSNLKEAIA-------DLHFIYATTARNRNNFKSVLAPK-------EAAIVLNERIF 116 R F+ K+A+ + + T + + P +I + + + Sbjct: 243 TRHFATTKQALEYLRNKRPNFMLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVL 302 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + V + G E G+ + + L +A++ P+ SLN++ ++++E + Sbjct: 303 TSPGVALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQWGA 360 >gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis UMN179] gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis UMN179] Length = 161 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L++P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANCGF-RLHLIHPLGFQWDDKRLRRS--GLDYHEYTTIKHH 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E + K + A + ++ ++FG E G+ Sbjct: 61 QSYAEFLE------------SEQPKRLFALTTKGGPAHSQVKFQLGDYLMFGPETRGIPM 108 Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I P+ S+N+S +V + V+E Sbjct: 109 AILNTMPIEQKIRIPMCANSRSMNLSNSVAVTVYEAWRQ 147 >gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803] Length = 212 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 64 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 169 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 154 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 19/165 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P++ N G R + +L LV P SE + + SV V + Sbjct: 4 VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHPD 62 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L A A + ++A TA A + ++FG E GL Sbjct: 63 LDSAWAAVTPARVFAFTA--------------HATASFADVAYRPGDVLMFGPEPTGLDA 108 Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +A + A + P+ SLN+S A + V+E S Sbjct: 109 ATLADPHITAQVRIPLLAGRRSLNLSNAAAVAVYEAWRQQGFSGA 153 >gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex V453] Length = 250 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + L R + +SA A + RV + Sbjct: 103 LDEIEDPHNLGSILRTADCTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQ 162 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + ++ T V+ + L + V I+ G E G+ Sbjct: 163 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNESKGMGRL 209 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++++E + Sbjct: 210 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246 >gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811] gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811] Length = 170 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 21/172 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P + N G +AR L L+ P +K + + V++ Sbjct: 5 IVLFEPLMPANTGNIART--TAGTNAILHLIEPLGFDLDDKHVKRA--GLDYWEHVKLVK 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++L + +A T +++ V + + +FG+E GL Sbjct: 61 HASLPDFLA--------TLTDKDQLYLVSKFANMDYTQPNYMQMQGDQYFLFGKETTGLP 112 Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181 E+ + I P N SLN+S V ++++E + + + Sbjct: 113 --EVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLFEALRQQHFPNLDTIH 162 >gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni KF-1] gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni KF-1] Length = 164 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 15/173 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 I+LV P++ N G V R N + L L+ P G+ E A D +V + Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I R + ++ +G ++FG E GL E Sbjct: 62 SWDAFIDSCQ--------PRRERMFAMTTHSSSPAHAMEFKAGDW--LVFGSESKGLPPE 111 Query: 136 EIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 A + P+ SLN+S AV + V+E + + + Sbjct: 112 VRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164 >gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 157 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L P++ +N G + R F L L++P ++K + + + V+ Sbjct: 5 IVLHQPRIPQNTGNIGRLC--FASDSVLHLIHPLGFSITQKELKRA--GMDYWNHLEVYE 60 Query: 76 --NL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL + ++ ++ Y TT ++ AP + L+ FGRE Sbjct: 61 WENLSSFMESSLLEIPHCYLTT---KSQTPYYNAPLKKGAYLH------------FGRED 105 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + ++ + + P+ SLN++ +V ++++E + Sbjct: 106 AGLDSTLLSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 155 >gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491] gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] Length = 163 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 27/170 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+L P++ +N G + R F L L++P ++K + + + V+ Sbjct: 11 IVLHQPRIPQNTGNIGRLC--FASDSVLHLIHPLGFSITQKELKRA--GMDYWNHLEVYE 66 Query: 76 --NL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NL + ++ ++ Y TT ++ AP + L+ FGRE Sbjct: 67 WENLSSFMESSLLEIPHCYLTT---KSQTPYYNAPLKKGAYLH------------FGRED 111 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL + ++ + + P+ SLN++ +V ++++E + Sbjct: 112 AGLDSTLLSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 161 >gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy] Length = 251 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 69/174 (39%), Gaps = 22/174 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64 L++ V++L + +N+G + R+ F+++ L ++ P R + S+ A Sbjct: 95 TLKDDDSALVLVLDEITDPQNLGAILRSADQFSVS-LVII-PERRSAQANTTVVKVSSGA 152 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + ++ + ++Y + + +K+V + Sbjct: 153 AQYVPLATVTNMNREIEYLKSQGFWVYGASMSGQAVYKTVFP---------------KRT 197 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E G+ L + +++ P++ SLN+S A ++++E Sbjct: 198 VLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGILLYEVRRQQATK 251 >gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 196 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 17/188 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F + L L +P E + SSA+A ++SVR Sbjct: 22 KDLTLVLANIHDPHNVSAIYRSADAFGVAALHLYYTDTAFP-ELGKKSSASARKWVESVR 80 Query: 73 V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L A+ A H I AT+ P+ + + + +I G E Sbjct: 81 HRSAEELYAALKAGGHQILATS----------CTPESKPLGAYDFT---KPTAVIMGNEH 127 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 G+ E +L + + P+ + S N+S A +++ E + + + Sbjct: 128 SGVPAELNSLVDGEVYIPMYGMIQSFNVSVAAAVILSEASRQRVQAGMYDRPSYPPDELA 187 Query: 190 GELLSFLD 197 L ++++ Sbjct: 188 ARLEAWIE 195 >gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu012] Length = 256 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+ + N G V R + L R P ++ V V ++ Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AIADL + AT E A+ +R+ + + +FG E GL+ Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E AL++ + ++ SLN++ A + ++E Sbjct: 219 AEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256 >gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sibiricum 255-15] Length = 254 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +I+L + + N+G + R + + R ++ +S A I VR Sbjct: 101 TPLMILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVR 160 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + +++ + T AR ++++++ +GI+ G E Sbjct: 161 VTNLTRTMEDLKKKGIWFVGTDARESDDYRTL--------------DGTMPLGIVIGSEG 206 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + ++ P+ SLN S A L+++E Sbjct: 207 KGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYEVYRTR 249 >gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307] Length = 442 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ L L R + +A A + RV + +L+ Sbjct: 255 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLE--- 311 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 R ++ V+ E + ++ G E GL+ + Sbjct: 312 -----------RLKDAGYRVVGLAEEGSATLAEADLDGPLVVVTGSEGQGLSMLTRRHCD 360 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 ++ P+ + PSLN S A L+++E + + + K Sbjct: 361 QLVRIPLRGVTPSLNASVATALLLYEVARRNWMGALKGTDPAP 403 >gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644] gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644] Length = 284 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 13/175 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQL--GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60 A Q + G ++LV P L EN+G + R L V P P S + Sbjct: 113 AASQRVTARSGRSVVLVCPALFNPENLGALIRLGDVMGAVGLV-VGPGCPDPLSRRVTRV 171 Query: 61 SANAD---CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 S A V+++ V + L + D A S L P + +RI Sbjct: 172 SMGASLAFPVVEASNVAAALDYLAGLGDHLLAAAVC---EPAGPSALKPGATVVPF-DRI 227 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V ++ G E GL + ++ + + + P SLN++ A ++++ Sbjct: 228 TWPDRVALLLGSEAHGLEPCWVQRADQLTTIVMRPGADSLNLAVATGILLYHLTR 282 >gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 277 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 22/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 QL+N +I+ + N+G + R L L + + + +S Sbjct: 120 QLKNQNNPFLIVAEAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLF 179 Query: 65 -DCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 VI+S LK+ + + AT A I + Sbjct: 180 TVPVIESQGAETLQWLKQ--KGISILAAT---------------PHAKQELADIDLTGPL 222 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E+ GL+ + + ++ + P+ + SLN++ A ++++E + Sbjct: 223 AIAVGTEQLGLSPQWMEQADIQVRIPMYGIADSLNVAMATTILLYEALRQR 273 >gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4] Length = 196 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 21/192 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F + Q+ L +P+ ++S++ A +D+VR Sbjct: 22 KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPALSGKTSAS-ARKWVDTVR 80 Query: 73 V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L + A H + AT+ +P + + + II G E Sbjct: 81 HQDRDSLMSTLRASGHQVLATS----------CSPVAKPVADYDLT---RPTAIIMGNEH 127 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 G++ E + + + + P+ + S N+S A +++ E +V+ T Sbjct: 128 SGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVAGMYAKPTY----TD 183 Query: 190 GELLSFLDYLEI 201 E + L Sbjct: 184 EEFEARLAQWIE 195 >gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000] Length = 278 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 11/170 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L AKG +++L +NIG + R+ F + L + S ++ A Sbjct: 117 ELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVD 176 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV NL A+ +L + +A A + + Q ++ G Sbjct: 177 KAPYARVV-NLSRALEELA----------DLGWRAVALAGEAEQSLDAVLDSQPTVLVLG 225 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G+ +A+ P+ F SLN+S A + ++E + V Sbjct: 226 SEGEGVRRLVAEHCDALGKIPMPGGFESLNVSAAAAIALYEASKVRAVDE 275 >gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 11V1-d] gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 03V1-b] gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2062A-h1] gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2053A-b] gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 60-B] gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 11V1-d] gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 03V1-b] gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2053A-b] gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2062A-h1] gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 60-B] Length = 170 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 16/160 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L++ +A T ++ + + + E +N +FG+E GL Sbjct: 61 HDSLEDFLA--------TLQSNDEMYLISKFSSKSYTDVEYTDPTKNYYFVFGKETTGLP 112 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P++ + N++ +V ++++E + Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQ 152 >gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753] Length = 270 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 10/154 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G V R + + L S K S A + + + A+ Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMA-LVETMPPAVN 184 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + P A + + +FS ++ ++ G E GL E I Sbjct: 185 ALE--------QKGFVTMAAVPDREAEPITQVLFSSPSIVLV-GNEGNGLKPETIRACQR 235 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ P+ SLN S A L++WE M S ++ Sbjct: 236 RVTIPMLGRAESLNASVAASLLMWEMMRASGEAA 269 >gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414] Length = 323 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 26/174 (14%) Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S PVI++ + N+G + R L + R + +A A ++ Sbjct: 158 SVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGA---LE 214 Query: 70 S---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV NL A+ +L +IY T +V + Sbjct: 215 NFSVARVV-NLSRALEELKEAGFWIYGTATTGSEPLHTVKF--------------SGPIV 259 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL+ + ++S P+ PSLN S A + ++E +++ Sbjct: 260 LVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRSLNT 313 >gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC] Length = 265 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 22/158 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81 + N+G + R + L +P + SS + ++S L E + Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRSSLGTVFTLP---IWSATLDEVL 181 Query: 82 ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + ++AT+ P+ + + E Q + ++FG E+ GLT+ + Sbjct: 182 QTIAEEKWQVFATS------------PRASTMYFCE--NYNQPLALVFGSEKDGLTSHWL 227 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + A IS P+ SLN+S AV + +E + ++ Sbjct: 228 KGNFAKISLPMLGQVDSLNLSTAVSAVAYEVIRQRWLA 265 >gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella capsiferriformans ES-2] Length = 247 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 +L Q N+G R+ F + ++ P+D A + A + + V + Sbjct: 100 VLDGIQDPHNLGACLRSADAFGVH--AVIAPKDRAVGITATVEKVACGAAETVPYITVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ A + I+ G E GL Sbjct: 158 LARTLRELKDQGIWVVGAAG--------------EAKQDLHSFKHTGPLAIVLGAEGEGL 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ P+ SLN+S + + ++E Sbjct: 204 RRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQR 243 >gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni S44] gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni S44] Length = 164 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 23/177 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 I+LV P++ N G V R N + L L+ P G+ E A D +V + Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++A T ++ A + A ++FG E G Sbjct: 62 SWDALLETCQPQRERMFAMTT---HSSSPAHAMEFKAGDW-----------LVFGSESKG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L E A + P+ SLN+S AV + V+E + + + Sbjct: 108 LPPEVRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164 >gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv] gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis H37Rv] gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra] gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu001] gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu010] gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis SUMu011] Length = 260 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+ + N G V R + L R P ++ V V ++ Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AIADL + AT E A+ +R+ + + +FG E GL+ Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E AL++ + ++ SLN++ A + ++E Sbjct: 219 AEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256 >gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia frederiksenii ATCC 33641] Length = 246 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246 >gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 232 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 19/204 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + +++ + N+ + R+ + L V+ + + + ++ A Sbjct: 14 LASRQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLYAVSSKKSIHTTQNAAAGAGRWTN 73 Query: 68 IDSVRVFSNLKEAI--ADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + L + + + AT T +R+ I+ Sbjct: 74 LHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFT---------------LPTAIV 118 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQ 183 G E G++ E I ++ I+ P+ + SLN+S A L+++E + S+ + + + Sbjct: 119 LGAEWEGVSAEAIQAADMAITIPMYGMVESLNVSVAAALILFEAERQRSLKGMYRTRRLE 178 Query: 184 NTPATKGELLSFLDYLEISLEERG 207 + K L L E+G Sbjct: 179 ESLYRKLLFELSYPRLSRQLREKG 202 >gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946] gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 344 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + L S + ++ L D N+G + R+ +F L LV+ S A ++ Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243 Query: 62 -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+ V +AI+ F A + + V + L+ Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELP-AR 291 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ G+ER GL++ + +S SLN+S A +++ E Sbjct: 292 MVLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 297 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 12/146 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + RA+ + L++P P ++ S + R+ EA+A + Sbjct: 154 NLGAIFRAVAALGV-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLEP-WPEALAGV- 210 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R + P A+ + + ++ G E GLT + S+A + Sbjct: 211 -------RAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGAGLTRAALDASDARV 263 Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170 P+ SLN++ A + WE Sbjct: 264 VIPMRRGVDSLNVAAATAVACWELGR 289 >gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria meningitidis 053442] Length = 234 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 130 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------RA 176 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233 >gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5948] Length = 248 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] Length = 282 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 15/175 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + V +L + N G V R + L + + KA +S + Sbjct: 112 EILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLF 171 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ A+A L + A ++ + L G Sbjct: 172 HLPVAVGVP-VERAVAGLREAGVRVLAADGAGEDDLDTELDAGTM----------GGPTA 220 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 221 WVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 275 >gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 271 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 15/157 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 V+++ Q N+G + R F + VN + K S+ + +D R Sbjct: 127 VVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYNPKVVRSAMGSMFHVDVVRERK 186 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + EA+ R V P V ++ I+ G E G+ Sbjct: 187 KEEVLEALN-----------KRGFALYVTTP--YGDVDISKLSVDDRFAIVIGNESKGVD 233 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + + SLN + A ++++E + Sbjct: 234 VAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270 >gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 263 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 26/167 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ + L + N+G + R + + L+ S + ++ + Sbjct: 111 DIDPNSNAVWVALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVF 170 Query: 67 VIDSVRVFSNLKEA-IADLHF----IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + V +EA +AD + T TA + + P Sbjct: 171 ALP---VVKCTREAFLADRSRWTGSVVGTLLTATHNHRTADYRRP--------------- 212 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ G E+ GLT + A + + P+ SLN+S A +M++ Sbjct: 213 -TLILMGTEQSGLTPDIAAACDTHVKIPMRGRADSLNLSVATGIMIY 258 >gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 255 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 11/166 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + PY + +++L N+G + R + L +EK S Sbjct: 93 VYPYIKGSLEKLQKNIVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDCYNEKVVRS 152 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + +++ ++ +E I L R +K + + V + + Sbjct: 153 SMGS--ILNMNILYMEEEELITFL---------KREGYKIEVTALDKDSVSYTEMKLTER 201 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+FG E G++ + + + I P+ + SLN++ A ++++ Sbjct: 202 NAIVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIILY 247 >gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase llmg_1343 gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 169 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G +AR N T L L+ P S+K + D V + Sbjct: 4 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIV-- 58 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + D A + V E + ++ +FGRE GL E Sbjct: 59 YHKNLQDFMNSIA----DGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 114 Query: 137 I-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + I P+N SLN+S ++V+E ++ Sbjct: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152 >gi|213029186|ref|ZP_03343633.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 69 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +ID++ VF L +A+ D+ F ATTAR+R F +P E +L E+ ++ Sbjct: 1 GSGDIIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAA 60 >gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] Length = 196 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G +AR N T L L+ P S+K + D V + Sbjct: 31 IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIV-- 85 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + D A + V E + ++ +FGRE GL E Sbjct: 86 YHKNLQDFMNSIA----DGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 141 Query: 137 I-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 + + I P+N SLN+S ++V+E ++ Sbjct: 142 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 179 >gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] Length = 198 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76 V+ + N G + R + KA SSA + I R + Sbjct: 51 VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 110 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + I AT+A + + A L + +FG E GL Sbjct: 111 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 158 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A ++ + P+ SLN++ A + ++E + Sbjct: 159 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 198 >gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4] Length = 247 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila UWE25] gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 148 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 17/158 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL PQ+ +N G + R T L +V+P ++ + + V V + Sbjct: 3 IILFQPQIPQNAGNIVRTCAVTG-TDLMMVHPLGFSTHDRWLKRA--GLDYWEGVSV--S 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 E + + N S A L + + +IFG E GL + Sbjct: 58 FIENLENY---------LENQQASFYFFSSKATTLYTEVSYAADSFLIFGSETSGLPSIF 108 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E N + P+ P LN++ + + ++E Sbjct: 109 QE-KWGNRFVKIPMKPKVRCLNLATSAGIALYEAWRQQ 145 >gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649] gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649] Length = 272 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 16/152 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEA 80 + N+G + R + + V+P W + S + S + + Sbjct: 132 EKPGNLGAMLRTADAAGVDAVIAVDPVTDWGNPNVVRGSKGTVFSIPVASATLGETIDWL 191 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + ATT P + + + G V I G E++GLT+E + + Sbjct: 192 REGGIRLIATT------------PDTETLHTDADLTGG--VAIAVGTEKFGLTDEALRAA 237 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P++ SLN S A ++V+E + Sbjct: 238 DLRVRIPMHGQVNSLNASAAAAIVVYEAVRQR 269 >gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. Y4.1MC1] Length = 245 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 97 ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLA 156 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++S+ + ++ G E G+ Sbjct: 157 RTMDELKERGVWIVGTDAKAKEDYRSL--------------DGTMPLALVIGSEGKGIGR 202 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + +I P+ SLN S A L+++E E Sbjct: 203 LILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245 >gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514] gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513] gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514] gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus Ab9] gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561] gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513] Length = 254 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 23/167 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVI 68 KG II + Q N+G + R F + + +N + K +S + ++ Sbjct: 105 KGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIV 164 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ++ LK+ + ++AT + R L V + G E Sbjct: 165 TASQILLKLKQ--RGIK-VFATHLKARK--------------LVHECNISDKVAFVLGNE 207 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G++ + L + + P+ SLN+S A + ++E ++ Sbjct: 208 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQRLIK 252 >gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens ATCC 13124] gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens B str. ATCC 3626] Length = 289 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + R+ + +S A + +V + Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI +L NN A E F G GII G E G++N Sbjct: 200 NINNAIEEL---------KANNLWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN S A +M++E +++ I+ Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289 >gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens str. 13] gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str. 13] gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens CPE str. F4969] gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens D str. JGS1721] Length = 289 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + R+ + +S A + +V + Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI +L NN A E F G GII G E G++N Sbjct: 200 NINNAIEEL---------KANNVWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN S A +M++E +++ I+ Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289 >gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus N315] gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus Mu3] gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315] gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2] gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122] gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH9] gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JH1] gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M876] gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781] gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9763] gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus A9719] gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9635] gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300] gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224] gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A5937] gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus ED98] gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C101] gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus C427] gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus aureus subsp. aureus D139] gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M899] gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus subsp. aureus Btn1260] gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A10102] gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus C160] gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A8117] gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus subsp. aureus H19] gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus ST398] gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus A017934/97] gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus 04-02981] gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M1015] gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 58-424] gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus M809] gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819] gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796] gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp. aureus CGS03] gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp. aureus CGS00] gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11] gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21172] gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21193] Length = 248 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 244 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + A +SA A I RV + Sbjct: 97 IILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN- 155 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 TT + + + A + + +G++ G E G++ Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN S A ++++E + Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241 >gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna ACS-171-V-Col3] gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna BVS033A4] Length = 244 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 13/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + A +SA A I RV + Sbjct: 97 IILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN- 155 Query: 77 LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 TT + + + A + + +G++ G E G++ Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN S A ++++E + Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241 >gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 17/164 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R + + + R + +SA A + +V + Sbjct: 98 ILILDEIMDPHNLGSIIRTADAVGVDGIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ L+ + ++ G E G+ Sbjct: 158 ISQTIDKLKEKGVWVAG--------------ADMKGKQLHFEADFKGALALVIGGEGSGI 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E I + Sbjct: 204 SRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQRISAE 247 >gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101] gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens SM101] gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens C str. JGS1495] gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens E str. JGS1987] gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium perfringens NCTC 8239] Length = 289 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + R+ + +S A + +V + Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI +L NN A E F G GII G E G++N Sbjct: 200 NINNAIEEL---------KANNVWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P+ SLN S A +M++E +++ I+ Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289 >gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491] gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76] gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399] gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385] gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M01-240013] gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76] gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M04-240196] Length = 261 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 28/172 (16%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFL--- 165 Query: 71 VRVFSNLKEAIADLH--------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++ ADL ++AT R L E Sbjct: 166 SEIYPQ-----ADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTA 208 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 209 WVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260 >gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus DSM 10642] Length = 224 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 20/153 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +N+G V R F + + + R +E S A + RV NL +I Sbjct: 87 QDPQNLGAVLRTAEFFGCSGVVIPKRRAAQVTETVVEVSQGAAFHLKISRV-ENLANSIK 145 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + ++ P + ++ G E G++ Sbjct: 146 KIKKYGFLVVGAEIGGKDLRSVKFTP---------------PLALVVGGEDRGISQPVKK 190 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ PSLN+S A ++++E + Sbjct: 191 MCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRH 223 >gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C] gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389] Length = 241 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 IL +NIG + R+ FN+ + L P D P+E + A ++ +++ + Sbjct: 99 ILDQITDPQNIGAIIRSAAAFNIDAIIL--PLDNSPNENGT-IAKAACGTLELIKIIKVT 155 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL I L ++ T EA +++ S + +IFG E G Sbjct: 156 NLNSCINYLKKHGFWVIGLTG-------------EANDYFTDKLISD-KIALIFGSEDKG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P++ SLN+S A ++ ++ Sbjct: 202 MRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHSLWDH 241 >gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L A +++L N+G R + +V PRD + A+ ++ A Sbjct: 89 LTQQAAPLLLVLDGVTDPHNLGACLRCADAAGVHA-VIV-PRDRAAPLNATAKKVASGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +RV + A T R +N V EA L + +G + + Sbjct: 147 ETVPLIRVTN------------LARTLRLLQEHNVWIVGTAGEADHHLYQSKLTG-PLAL 193 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVRQRWQK 245 >gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L] gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012] gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus Q1] gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CNEVA-9066] gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A1055] gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Western North America USA6153] gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Kruger B] gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Vollum] gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Australia 94] gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI] gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Ames] gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC 10987] gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. 'Ames Ancestor'] gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241] gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. Sterne] gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family [Bacillus cereus E33L] gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0488] gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0193] gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0442] gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0389] gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0465] gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0174] gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis Tsiankovskii-I] gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W] gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187] gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820] gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus Q1] gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB102] gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. CDC 684] gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis str. A0248] gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus cereus biovar anthracis str. CI] gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 247 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46] Length = 248 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925] gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum BKT015925] Length = 263 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 11/159 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + + R+ + +SA A + +V + Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKV-A 174 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL +I D+ A + F G V ++ G E G++ Sbjct: 175 NLNRSIDDI---------KEKGIWVYGADMAGESYCFQTNFKGA-VALVIGSEGRGISKL 224 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ P+ SLN S A +M++E ++ + Sbjct: 225 TKEKCDVLVKVPMVGNITSLNASVAAGIMMYEVLKQKME 263 >gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 303 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 11/181 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + + +L + N G V RA + + L + KA S+A + Sbjct: 122 EEVLDGGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGSL 181 Query: 66 CVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------ 118 + V + +++ E A A + ++ ++ + +G Sbjct: 182 FHLP-VVLGADVGELAAACRARGIGILAADGYGSLNLDTLQDESAR-RRLTGAGPSSTYA 239 Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 Q +FG E GL+ EE+AL++ ++ PV SLN+ A + ++ + V + Sbjct: 240 LEQPTAWLFGNEAQGLSEEELALADHRVAVPVYGSAESLNLGTAATVCLYASARSQQVPA 299 Query: 177 E 177 Sbjct: 300 A 300 >gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133] Length = 248 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 V+IL + N+G + R + + + R ++ +S A I+ V V Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGA---IEHVPVIR 153 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL + I DL ++ T A N +++ + + ++ I+ G E Sbjct: 154 VTNLAKTIDDLKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEG 199 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G++ + I P+ SLN S A LM++E E Sbjct: 200 QGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8] gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8] Length = 263 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 PQL + P +L+ D Q NIG + R + + L S KA Sbjct: 104 PQLP-VPEQPEFVLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A V+ V L A+ + YAT + + + L+ Sbjct: 163 AQFVLPIVERVD-LINALQEFDGNSYATAMQGESLYAQDLS---------------APTA 206 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172 + G E GL + +A ++ I+ P+ SLN A + ++E M + Sbjct: 207 FVIGNEGAGLRKQTMAATSKRITIPMANTALGSVESLNAGAAAAVCLFERMRQA 260 >gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC 7420] Length = 306 Score = 62.4 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVRVFSNLK 78 Q N+G + R + L L +P ++ + + + ++ Sbjct: 160 QDPGNLGTIIRTATAAGVDGLWL-SPDSVDLENPKVLRASAGQWFRLPISANANLSQVVR 218 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 ++ A + AT K+ L+ E + I+ G E GL++E Sbjct: 219 QSQAQGVQVVAT------LPKAPLSYWEIDWRI--------PTLILLGNEAAGLSSELTV 264 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L++ + P+ SLN++ A L+V+E + + + Sbjct: 265 LADQAVQIPLGQDVESLNVAIAAALIVYEALRQRVGGTG 303 >gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis] Length = 195 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G +AR FN+ QL LV R + + +D ++ L E DL Sbjct: 11 HNLGTLARCATAFNVRQLCLVGSRQF-----NTFGAHGSSEYVDFCH-YNTLDECCQDLK 64 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T + A ++ F G N + G E GL +++AL ++ + Sbjct: 65 DNKGCTVVGVEII-------DGAQPVHRFPFRG-NTAFMLGNEGQGLNEKQLALCDSFLY 116 Query: 146 FPVNPL-FPSLNISQAVLLMVW 166 P SLN++ A +++ Sbjct: 117 IPQYGAGTASLNVAVAASIVLH 138 >gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293] gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 198 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 50 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 109 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 110 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 155 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 156 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 191 >gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp. ATCC 51142] Length = 219 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + + +L + N+ + R + + +N D +P+ S + Sbjct: 13 EVLEKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT---FSQVSQGS 69 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQ 119 + N++ AI L FK A L ++ Q Sbjct: 70 DKWIFLHTHPNIQTAINHL---------KSKKFKIY------AAHLTDKSVDYRDIDYTQ 114 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E+WG++ E +L + I P+ + SLN+S A ++++E + Sbjct: 115 PTALLLGAEKWGVSEEAASLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLQKK 171 >gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus ureae ATCC 25976] Length = 247 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 20/174 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L ++IL N+G R + +V P+D + AR + A Sbjct: 89 LSQKQNPFLLILDGVTDPHNLGACLRTADVAGV-DAVIV-PKDKSAQLTSTARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R ++N V EA + + +G + Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 247 >gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3] Length = 275 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 29/157 (18%) Query: 27 NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79 N+G + R A N LV P P +A S + ++ + + Sbjct: 134 NVGAIFRSAAALNM---DAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190 Query: 80 ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ A + R+ + + + + + I+ G E GL Sbjct: 191 GSAQLHALGFKTAAMALSDRS-------------VSIDDAALAAEPKLAIVLGTEGDGLA 237 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 N IA + + P++ SLN++ A + W+ Sbjct: 238 NSTIAACDYTVKIPMSHGVDSLNVAAASAVAFWQLGR 274 >gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5] gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum indicum S5] Length = 228 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 26/163 (15%) Query: 16 VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN------ADCVI 68 I+L Q N+G + R+ F + + + S+ +SA V+ Sbjct: 82 CIVLADRVQDPGNLGAIIRSAAAFG-ADVVITEHQSAPISDTVIKASAGNIYHTRVGRVV 140 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ R KE N F +V E + ++ + ++ G E Sbjct: 141 NAARYVEKAKE----------------NGFWTVALDGEGESLFRLKL--DGKILLMVGNE 182 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + + ++ S P+ P SLN S A + ++E Sbjct: 183 GSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225 >gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni CNB-2] gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni CNB-2] Length = 164 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 23/177 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75 I+LV P++ N G V R N + L L+ P G+ E A D +V + Sbjct: 4 IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++A T ++ A + A ++FG E G Sbjct: 62 SWDAFLETCQPQRERMFAMTT---HSSSPAHAMEFKAGDW-----------LVFGSESKG 107 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L E A + P+ SLN+S AV + V+E + + + Sbjct: 108 LPPEVRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164 >gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON] gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis 50-1 BON] Length = 249 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R + + R + +SA A I V + ++ Sbjct: 111 PHNMGAIIRTAECMGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLK 170 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D +I R R + +G+I G E G+ + Sbjct: 171 KDGLWIMGADMRGR----PCRSMDLKGP-----------IGLIIGGEGSGIRRLVKEKCD 215 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++S P++ SLN S A ++++E + Sbjct: 216 VLLSIPMSGHIASLNASVAAGMLMYEISMQRL 247 >gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding [Faecalibacterium cf. prausnitzii KLE1255] Length = 260 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 15/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79 Q N+G + R+ F + L + + K +S A VI++ + + Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEA----GAMPD 174 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 AI T R + A ++ + + V ++ G E GLT+E IA Sbjct: 175 AI--------TQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAA 226 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + P+ SLN A +++W E S+ Sbjct: 227 CSSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260 >gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 97 ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLA 156 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++S+ + ++ G E G+ Sbjct: 157 RTMDELKERGVWIVGTDAKAKEDYRSL--------------DGTMPLALVIGSEGKGIGR 202 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + +I P+ SLN S A L+++E E Sbjct: 203 LILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245 >gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1] Length = 158 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 27/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 ++L +P+ N+G VAR +L L+ P ++ + + V + Sbjct: 13 VVLFEPEKAGNVGNVARTCSVLG-AELHLIRPFGFHLHDREFRRAV--MDYLQGVTLHEY 69 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + D ++A + A + R + ++FG E G Sbjct: 70 AGWSDFQAQLPDAARVFAFST--------------HATEYHTRAGFKRGDYLLFGPESRG 115 Query: 132 LTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + L +A+ + P SLN+S AV +E Sbjct: 116 LP---VWLRDALPKLKLPQPGRGRSLNLSVAVGAAAFEAGRQ 154 >gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941] Length = 237 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 17/163 (10%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVID 69 + P++ +L N+G V RA +V P+D + A +SA A + Sbjct: 84 ENPLVAVLDGVTDPRNLGAVLRAAD--GAAASGVVVPKDRAAGVTPAAVKASAGASEHVR 141 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV +NL+ A+ R + V A + E SG V ++ G E Sbjct: 142 LARV-TNLRRAVD----------RMKEEGLWVYAAEPGGENYAEADLSG-PVALVLGSEG 189 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + ++S P+ SLN+S A ++++E Sbjct: 190 RGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQR 232 >gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 251 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + +N ++IL N+G + R N+T + + R + + Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S A + RV + L + D F I+ T ++ Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 195 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G + ++ G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251 >gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces limnophilus DSM 3776] Length = 271 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANAD 65 Q ++IL Q N+G + R + L P G + +A SSA A Sbjct: 115 FQAQLPALLVILDGIQDSFNLGAIIRCAEALGAGGIVL--PEKGQSGVNSQAARSSAGAV 172 Query: 66 CVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + L AI L I A T ++ + +V+ P + Sbjct: 173 NFLP-IYRVPALDRAIDQLKSRGMKILAATEKSEQSLWNVVIP--------------APL 217 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G+++ ++ + + P+ SLN + A +++ E S+ Sbjct: 218 CLIIGNEGKGVSSALLSACDIQVRIPMAGQTSSLNAAVAAGILLAEIQRQSL 269 >gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316] gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316] Length = 249 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + +N ++IL N+G + R N+T + + R + + Sbjct: 89 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 148 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S A + RV + L + D F I+ T ++ Sbjct: 149 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 193 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G + ++ G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 194 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 249 >gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 515] gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae COH1] Length = 251 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + +N ++IL N+G + R N+T + + R + + Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S A + RV + L + D F I+ T ++ Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 195 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G + ++ G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251 >gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272] gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273] Length = 198 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 50 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 109 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 110 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 155 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 156 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 191 >gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72] Length = 254 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 23/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70 +++L Q N+G R +V P+D + A ++ A + Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAH--AVVAPKDRAVGLNATAAKVASGAADTVPY 158 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V +NL A+ ++ ++ A ++ + + G Sbjct: 159 ITV-TNLARALREMQEAGVWVVGAAG--------------EAEKSVYQVDQRGPLAWVLG 203 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + + P++ SLN+S A + ++E Sbjct: 204 AEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGICLFEARRQR 249 >gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH1134] gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264] gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 247 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGTMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 156 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + +++ + Sbjct: 6 IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADLQIHKD 64 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +A L ++A T F V + ++FG E GL Sbjct: 65 FDACMAALPGARVFAFTTHTDKWFTDVEF--------------QEGDVLLFGTEPTGLPP 110 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + P+ P S+N+S A V+E Sbjct: 111 EHVNHPRITEQVRIPMVPARRSMNLSNAASTAVYEAWRQ 149 >gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM 30120] gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM 30120] Length = 167 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I+L +P++ N G + R N + L L++P +K + +D + Sbjct: 2 PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAG-----LD----Y 51 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------ 122 S + I H YA L P R+F+ G Sbjct: 52 SEFAD-IKHHHDYYAF------LESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYRED 104 Query: 123 --IIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL + I P+ S+N+S +V ++V+E Sbjct: 105 DYLMFGPETRGLPPYVLDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQ 157 >gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum SS14] gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp. pallidum str. Chicago] Length = 319 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 22/193 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVF 74 V++L N+G + R+ F + L + + R + + + +R Sbjct: 119 VVLLDRVGDAHNLGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLR-C 177 Query: 75 SNLKEAIADL----HFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +N +E + + A+ R+ ++L+P+E V ++ G E Sbjct: 178 TNAQEVLEMCAGKMTRVGASPHAFRSLTRLSNILSPEE-------------AVILVLGNE 224 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL+ A + + + SLN++QA L + ++ + + TP Sbjct: 225 ETGLSEHLTAHCDHLCRIAGSGQVESLNVAQAGALFLSTIVQLRQSPQDYTQGHRATPRA 284 Query: 189 KGELLSFLDYLEI 201 + + LE Sbjct: 285 QERVHRC-GQLEE 296 >gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 224 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 74/194 (38%), Gaps = 23/194 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82 N+ + R+ + ++ V+ R + +++A ++ V + ++ ++ Sbjct: 19 AHNLSAIIRSCDAVGIHEIHAVSYRKNIFDRQ--TAAAGTTRWVE-VTLHQSITSGLSMI 75 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + A+ + +F+S+ + +I G E G++ E + Sbjct: 76 AGRGMQILAASGSSKNVDFRSIDYTR--------------PTALILGAEWDGVSTEALEA 121 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL-LSFLDY 198 ++ IS P++ + SLN+S A ++++E + + + L + Sbjct: 122 ADHHISIPMHGMIESLNVSVAAAVILFEAERQRTAAGMYSRPMLEKESFDRLLFENAYPR 181 Query: 199 LEISLEERGYFRPV 212 L L E+G P Sbjct: 182 LGRILREKGLPYPE 195 >gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430] Length = 344 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + L S + ++ L D N+G + R+ +F L LV+ S A ++ Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243 Query: 62 -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+ V +AI+ F A + + V + L+ Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELP-AR 291 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ G+ER GL++ + +S SLN+S A +++ E Sbjct: 292 MVLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] Length = 156 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + +++ + Sbjct: 6 IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLADLKIHKD 64 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ D ++A T F V + ++FG E GL Sbjct: 65 FDACMEALPD-ARVFAFTTHTEKWFTDVEY--------------QEGDVLLFGTEPTGLP 109 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + P+ P S+N+S A V+E Sbjct: 110 EEHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQ 149 >gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410] Length = 248 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842] Length = 247 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman] gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp. aureus COL] gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30] gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus A9765] gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754] gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA131] gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus MRSA177] gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus 21189] Length = 248 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + ++ T A N +++ + + ++ I+ G E G+ Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + I P+ SLN S A LM++E E Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus radiotolerans SRS30216] Length = 321 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + V+ L N+G V R++ F + + R + A + Sbjct: 160 MDLLDRAADSGRPALVVALDGVTDPRNLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKT 219 Query: 61 SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 SA A R +NL AI + F+ A E ++L + Sbjct: 220 SAGAAARTPVAR-ATNLVRAIEEYQKAGLFVVGLDA-------------EGDVLLPQLKL 265 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ G E GL+ + ++S P+ F SLN A + ++E + Sbjct: 266 ADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGVAAGIALYEVARHR 321 >gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 247 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V P+D + AR + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 156 Query: 76 NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A T R ++N V EA + + +G + ++ G E G+ Sbjct: 157 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +IS P+ SLN+S A + ++E + + + Sbjct: 204 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 247 >gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396] gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396] Length = 238 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 15/160 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ + +V P+D + AR + A V +RV + Sbjct: 92 VLDGVTDPHNLGACLRSANAAGVHA-VIV-PKDKSAPLNAAARKVACGAAEVTPLIRV-T 148 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + + ++ A + +V I+ G E G+ Sbjct: 149 NLARTLKHIQ----------TYGVWLVGAAGEAEQSLYQADLKGSVAIVMGAEDKGMRRL 198 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +++++ P+ SLN+S A + ++E + Sbjct: 199 TRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQRQAG 238 >gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159] Length = 248 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL + N G + R N+T + + R + +S A I R Sbjct: 100 NPLLLILDELNDPHNFGSILRTADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIAR 159 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +NL +A+ L +I+ T + SG + +I G E Sbjct: 160 V-TNLGQALDKLKAAGFWIFGT--------------DMNGTPSTQWNTSG-KLALIIGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+++ + +++ P+N SLN S A ++++E N Sbjct: 204 GRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens] Length = 1088 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 16/170 (9%) Query: 11 SAKGP-VIILVD-PQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANAD 65 A GP ++L + +N+G V R F +V D + + R S +A Sbjct: 138 PATGPSTVVLCERTNNLDNVGAVFRNGAAFGAG--AVVFDGRSADPYYRKSIRVSGGHAL 195 Query: 66 CVI--DSVRVFSNLKEAIADLHFIYA-----TTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + ++ A A H + A T+AR+ +V AP + Sbjct: 196 AIPFTRRGSIADVVQAAKASGHVVCALVTPPTSARSTAVDDAVGAPVPINEWRADD--RP 253 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + V ++ G E GLT+E L++ ++ P+ S+N++ A + + E Sbjct: 254 ERVAVLMGAEGPGLTDEAQRLADVRLTIPMANAVDSVNVATACSIALHEL 303 >gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17] gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 64 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 169 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 170 IIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W] gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550] gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15] gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2] gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185] gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676] gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 161 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 13 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 72 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 73 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGTMPIGLVIGSEGKGMSR 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 119 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154 >gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 217 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + +L ++ R G +K + A +D + F ++ I Sbjct: 44 HNTSAVMRSCEVFGIQELNVIEERYGKSIDKEIAM--GAQKWVD-INTFDSVTNCIE--- 97 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + +N+ P E L E + + FG ER GL+ E + ++ + Sbjct: 98 -----SLKNKGYQIIATTPHEN-DCLLEDFDISKPSALFFGTERDGLSEEILKQADGFLK 151 Query: 146 FPVNPLFPSLNISQAVLLM 164 P+ SLNIS + ++ Sbjct: 152 IPMVGFTESLNISVSAAII 170 >gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 30/181 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P+L++ S + VIIL NIG + R+ F + L + ++ + Sbjct: 79 SQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVDALVV---KERHSPSETS 135 Query: 59 SSSANADCVIDSVRVF--SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN 112 + A ++S+ V +NL A+ L F YA R+ + P Sbjct: 136 VIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKLTEIRFP-------- 187 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECME 170 V + G E G+++ + +S P+ + F S+N+S A + ++ Sbjct: 188 ------NKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMFRFYS 241 Query: 171 N 171 Sbjct: 242 A 242 >gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 286 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R Sbjct: 133 VALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPLARA--- 189 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNE 135 EA A A + ++ V + +SG V ++ G E+ GL ++ Sbjct: 190 -DEA--------AFLAWREHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDK 240 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ P SLN++ A +M++E ++ +S Sbjct: 241 LAEACDRLVRIPQAGRADSLNLAVATGVMLYEIRRTALPASHGTP 285 >gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2] Length = 245 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 23/171 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L +K +++L N+G R + +V P+D + R + A Sbjct: 91 LDKESKPLLLVLDGITDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 VI ++V +NL + L +I T K++ I Sbjct: 149 EVIPLIQV-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYD-----------IKLDGPT 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEIVRQR 244 >gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 247 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 161 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 13 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 72 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 73 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 118 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 119 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154 >gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] Length = 203 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 28/172 (16%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A G ++L Q N+G V R+ + + L S K + A + Sbjct: 51 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFL--- 107 Query: 71 VRVFSNLKEAIADLH--------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++ ADL ++AT R L E Sbjct: 108 SEIYPQ-----ADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTA 150 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +FG E G+ + ++ + P++ SLN++ A + ++E M Sbjct: 151 WVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 202 >gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411] gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC 43734] gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411] gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC 43734] Length = 171 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 24/152 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P++ N G R + L L P +K + + V V Sbjct: 16 VVFDRPEIPPNTGNAIRMCAGTGAS-LHLAGPLAFKFDDKHVRRAGLDYHELADVHVHEG 74 Query: 77 LKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + EA+A + ++A TA+ F V ++FG E Sbjct: 75 IDEALAHVTDPARGSGRVFAFTAQTGTWFTEVDY--------------QPGDVLLFGPEP 120 Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159 GL +E +A A + P+ P S+N+S Sbjct: 121 TGLADEVLADPRVTAKVRIPMLPGRRSMNLSN 152 >gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1] gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342] gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201] gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42] gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 175 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 27 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 86 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 87 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 132 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 133 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168 >gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 228 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 22/153 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N+G + R+ + + + + +D + E +S+ A + V + Sbjct: 85 VLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKD-FKQEGVLRASSGAMLGMPFCVVHN 143 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + I +L ++ T+ + ++ + SG+ + G E G Sbjct: 144 PL-DVINELKQSDFTLFGTSMQGKDL---------------QNALSGKK-ALFLGSEGHG 186 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 L+N+ +A + ++ P+ F SLN+ A ++ Sbjct: 187 LSNKILAKMDYNLTIPMKREFDSLNVGVAGAIL 219 >gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM 13031] Length = 180 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R + ++ L P ++ ++ A + L Sbjct: 40 NVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAWEYHADPL--------- 90 Query: 87 IYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A +A R K L E + + + ++ G E GL NE + L + ++ Sbjct: 91 -VALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLELCDEVLE 149 Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170 P SLN++ A + ++E + Sbjct: 150 IPQYGTKHSLNVAVASGIALFEFVR 174 >gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus subsp. aureus JKD6159] Length = 248 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 V+IL + N+G + R + + + R ++ +S A I+ V V Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGA---IEHVPVIR 153 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL + I DL ++ T A N +++ + + ++ I+ G E Sbjct: 154 VTNLAKTIDDLKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEG 199 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G++ + I P+ SLN S A LM++E E Sbjct: 200 QGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247 >gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 248 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 20/164 (12%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A PV++L +P+ N G V R F T + D W R + Sbjct: 98 ARLAHTPRTAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG-- 155 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + L+ A + L + + + Sbjct: 156 ---LHFATAVERLEVA---------------DLPAGPLFALDPEGDDIRSTKLPDDAVLA 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 FG ER GL+ E A ++ ++S P+ P S N++ +V + ++ Sbjct: 198 FGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMTLYHW 241 >gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 257 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 16/164 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL NIG + R FN+ L L P + PSE A +++ A ++ + V Sbjct: 107 IVILDQVTDTHNIGSILRTSACFNVNALVL--PHNHSPSENASIAKAASGALDIVPLIYV 164 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132 + I T + A + I S + IIFG E G+ Sbjct: 165 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSLEKKRVIIFGSEEKGM 213 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P++ + SLN+S A + ++ + S+ Sbjct: 214 RRLVKENCDYLLKIPISNVIDSLNVSNAAAIGLYSIYIKTNASA 257 >gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24] gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24] gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24] Length = 282 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 15/175 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + V +L + N G V R + L + + KA +S + Sbjct: 112 EILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLF 171 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----G 122 + ++ A+A L R VLA A + G + Sbjct: 172 HLPVAVGVP-VERAVAGL----------REAGVRVLAADGAGEDDLDTELDGGTMRGPTA 220 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 221 WVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 275 >gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 169 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 46/175 (26%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P N G +AR N T L L+ P +K + D V+V Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TVLHLIKPLGFSTDDKHMRRA--GLDYWDKVKVV 59 Query: 75 -----SNLKEAIADLHFIY-----ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + + DL +Y AT R+ + + Sbjct: 60 YHDDLPSFIQTVPDLKHLYIVSKFAT----RDYTDVDYT-------------ESGDHYFL 102 Query: 125 FGRERWGLTN------EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172 FG+E GL E+A I P N +LN+S + ++++E + Sbjct: 103 FGKETTGLPEPFMRKYPELA-----IRIPQNDQNIRALNLSNSAAIIIYEALRQQ 152 >gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2] Length = 147 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 22/141 (15%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSN 76 N+G + R+ F + LV PR P ++ S + R+ + Sbjct: 8 HHINVGAIFRSAAAFGV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWPAGVDS 66 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+E L F A A + +A ++ A ER I+FG E GL Sbjct: 67 LRE----LGFHVAALA----LEQDSVAIRDFAANAPER------TAIVFGTEGDGLRRST 112 Query: 137 IALSNAIISFPVNPLFPSLNI 157 IA ++ + P++ SLN+ Sbjct: 113 IAACDSTVMIPMSGGVDSLNV 133 >gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3] gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271] Length = 175 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 27 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 86 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 87 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 132 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 133 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168 >gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens NRL30031/H210] Length = 249 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P +++L N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P +V Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SV 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + +IS P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249 >gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium salmoninarum ATCC 33209] Length = 336 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 23/178 (12%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVID 69 P+I+ L N+G + R++ F Q +V P R + A +SA A + Sbjct: 174 NSPLIVALDGITDPRNLGAIIRSVSAFA-GQAVIV-PERRSVGLTASAWKTSAGAAVRVP 231 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R NL A+ F+ + + L + + V I+ Sbjct: 232 VAR-AGNLNRALESFKGMGYFVLGLDG-------------DGDVSLPALAVAKEPVCIVV 277 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 G E GL+ + I+S P++ SLN S AV + ++E S + Sbjct: 278 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEIARQRSGGSAEQGNPS 335 >gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. HGF5] Length = 250 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + L R + +SA A + RV + Sbjct: 103 LDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQ 162 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + ++ T V+ + L + V I+ G E G+ Sbjct: 163 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNENKGMGRL 209 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++++E + Sbjct: 210 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246 >gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102] gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102] Length = 249 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P +++L N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ SEK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249 >gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 212 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 64 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 169 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus Ueda107] Length = 249 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 29/181 (16%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 L + P +LV N+G R+ + ++ P+D + AR + Sbjct: 88 SLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAGVH--AVIAPKDKSAGLTPVARKVAC 145 Query: 63 NADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A V+ + R L+E + A +++ +++ L Sbjct: 146 GAAEVLPFIPVTNLARTLKKLQE--KGIWLFGAAGEASQSLYQTRLT------------- 190 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ G E GL + ++ P+ SLN+S A + ++E + V+ Sbjct: 191 --GPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVRQRQVAP 248 Query: 177 E 177 Sbjct: 249 A 249 >gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 245 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + + R + +SA A + RV + Sbjct: 97 ILILDEIEDPHNLGSILRTADCTGVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARV-T 155 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + I L A + F + ++ G E G+ Sbjct: 156 NLAQTIEQL---------KEKGIWVAGTDVNQAEDVYRSNFRM-PIALVIGNENKGVGRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ P++ SLN S A ++++E S Sbjct: 206 VKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVARQRSSS 245 >gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 24/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L N +++L N+G R +V P+D + AR + A Sbjct: 89 LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV +NL + +L ++ T A + Sbjct: 147 ETVPLIRV-TNLSRTLRNLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244 >gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 152 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 19/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L++P++ N G + R + L LV P ++ + ++ + Sbjct: 5 IVLIEPEIPNNTGNIGRLALGSG-STLHLVKPFGFEITDTRLKRA--GLDYWQHLNLHYY 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N+++ + +N K ++ + I ++ ++FG+E GL Sbjct: 62 DNIEDFLE------------KNKTKKMVFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPK 109 Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 + + + P+ + SLN++ AV ++V+E ++ Sbjct: 110 SLTSKHQDKLFKIPLYSEHIRSLNLANAVSIVVYEGLKQ 148 >gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri 93-146] gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 230 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 21/184 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R + Q+ V P G S++A ++ + SV+ ++ A+ +L Sbjct: 30 PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-SVKTHRDIAAAVGEL 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + A V I + I+ G+E+ G++ E + L++ I Sbjct: 87 ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204 P+ + SLN+S A L+++E + + ++ P+ E + L Sbjct: 138 IIPMVGMVQSLNVSVASALILYEAQRQR---QQAGMYGRSQPSLNEEQQ------QRLLW 188 Query: 205 ERGY 208 E GY Sbjct: 189 EGGY 192 >gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879] gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879] Length = 160 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 37/169 (21%) Query: 17 IILVDPQLGENIGMVARAM--WN-FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I+LV+PQ+ +N G + R N L L++P EK + ++V Sbjct: 7 IVLVEPQIPQNTGNIGRLCVAANAM----LHLIHPLGFSTKEKDLKRA--GLDYWQHLKV 60 Query: 74 FS--NLKEAIADLHFIYATTARNRNNFKSVLAPKE-------AAIVLNERIFSGQNVGII 124 + NL+ +F P A L + Sbjct: 61 YEWANLE------------------SFWQTYTPDATHFFFSTKAKKLYFEADLKHGAFLY 102 Query: 125 FGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FGRE GL + N I P+ S+N++ + +++E + S Sbjct: 103 FGREDAGLPLHILESFKNQIYKIPMQKGVRSINLATSAGAVLYEAVRQS 151 >gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 3_1_53] Length = 237 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + +++L + N+G + R + + R+ + S A Sbjct: 79 EAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKHRNVRLTPTVAKVSTGAI 138 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V V +NL +AI L ++ T +F++ +E + + Sbjct: 139 DTV-KVSVVTNLAQAIKYLKKQGYWVVGT------DFENSRDYREGQYDV--------PL 183 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E +G+++ + + P+ SLN S A +++++ Sbjct: 184 VLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 234 >gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56'] gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56'] Length = 152 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 14/154 (9%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P++ +N G +AR + L L+ E++ + +D + L+ Sbjct: 2 LVEPEIPQNTGNIARLAAAT-QSPLHLLGRLGFRIDERSVRRAG-----LDYWHLV-TLE 54 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + HF R+ + + A ++FG+E GL E +A Sbjct: 55 QQLDIAHF------RHHHPNARLRLFSAVAPRSYLDADFRPGDALVFGKESVGLDPELLA 108 Query: 139 LS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P SLN++ AV ++++E + Sbjct: 109 RMPDDVFGIPTLGPVRSLNLANAVSIVLYEALRQ 142 >gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum ATCC 700975] Length = 158 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + +++ + Sbjct: 8 IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLADLKIHKD 66 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ D ++A T F V + ++FG E GL Sbjct: 67 FDACMEALPD-ARVFAFTTHTEKWFTDVEY--------------QEGDVLLFGTEPTGLP 111 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + P+ P S+N+S A V+E Sbjct: 112 EEHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQ 151 >gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM 2638] gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM 2638] Length = 161 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L +P++ N G +AR + TQL L+ P S+K + V+ V+ Sbjct: 12 IVLFEPEIPPNTGNIARLCAGTD-TQLHLIEPLGFSISDKHLKRA--GLDYWPKVKLSVW 68 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N +E + + T+A+ + + G + ++ G E GL Sbjct: 69 KNWQEYKENAKPQRLVTTSAKRGTHLFEF------------KFLPGDH--LVLGPETRGL 114 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P SLN+S + +++++ + Sbjct: 115 PEWMFDEFKHAVNIPTTDNVRSLNLSTSAGIILYQALS 152 >gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase) [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82 N+ + R+ + V WP + + S + ++ + N+ +A Sbjct: 31 HNLSAIVRSADAVGCHHVHAV-----WPENQKWLTNNTSGGSKNWLE-THLHKNIDDA-- 82 Query: 83 DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 AT R RN +LA A+ E I + II G+E+ G++ + + + Sbjct: 83 ------ATAMRARNPDIQILATHLSTDAVDFRE-IDYTKPTAIIVGQEKTGISEQALKHA 135 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A L+++E ++ Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171 >gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 246 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 17/166 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G +++L + +N+G + R + + + R +E SA A + RV Sbjct: 95 GLLLVLDGIEDPQNLGSLLRTADAAGVHGVIIPERRAVGLTETVAKVSAGAVEYVPVARV 154 Query: 74 FS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L+ +++ T + A L + ++ G E Sbjct: 155 TNIARTLEMLKERGYWVVGTH--------------QEADELYYEARLTGPLAVVIGSEGR 200 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ + + P+ SLN + A ++++E + Sbjct: 201 GMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQRSAGA 246 >gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 272 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R+ F + +V+PR P ++ S + R S +L + + Sbjct: 138 NVGALFRSAAAFGVDG-VVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDL-DLLR 195 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F A A + V + + ++ G E GL+ ++ ++ Sbjct: 196 SAGFAVAALALTED------------SVALGSFAVPERLALLLGTEGDGLSRRALSGADL 243 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P++P SLN++ A + +WE Sbjct: 244 VVRIPMDPRVDSLNVAAASAVALWETRRA 272 >gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC 35037] Length = 242 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 63/170 (37%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + A+ + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKAEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9301] Length = 334 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 20/165 (12%) Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +++ P+I+ N+G + R+ F+ + + R + +A A Sbjct: 182 KHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALEH 241 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV NL A+ +L + + + S+ +E A ++ + Sbjct: 242 LHVSRVV-NLNRALEELKKNGFLVVGLSG---DGQISISNFQEKAPLV-----------V 286 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + G E G++ + I+S P+ SLN S A + ++ Sbjct: 287 VVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLYHL 331 >gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 11/158 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N G + R+ F L +++ A ++ R+ + Sbjct: 142 VVVLDQVTDPHNFGAILRSAAVFGAGALITTERNSPSLGGVLAKAASGALELVRVARI-T 200 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL AI +L + V+ + V ++ G E GL Sbjct: 201 NLVRAIEEL----------KELGFEVVGLDGEGEASLPDLKLSPRVALVLGAEGAGLRRL 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + P SLN+S A + ++E ++ Sbjct: 251 TREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRRNL 288 >gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815] gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum STM815] Length = 247 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + +GP ++LV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T EA L E G Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGIWVVGTAG-------------EATASLYETKLDG 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRAVKK 247 >gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605] gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605] Length = 158 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 25/151 (16%) Query: 34 AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAIADLHFIYAT 90 +L LV P SE + + SV V ++L EA++ ++A Sbjct: 25 TCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSP-ARVFAF 82 Query: 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----F 146 TA A L + ++FG E GL +E L++ I+ Sbjct: 83 TA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--DEATLADTHITGQVRI 126 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 P+ SLN+S A + V+E + Sbjct: 127 PMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 157 >gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1] gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 09V1-c] gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LactinV 09V1-c] Length = 170 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L++ +A L A + S + K + E +N +FG+E GL Sbjct: 61 HDSLEDFLATLQ------ANDEMYLISKFSSKSYTDI--EYTDPTKNYYFVFGKETTGLP 112 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + P++ + N++ +V ++++E + + Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEQSHH 162 >gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 253 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 13/174 (7%) Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P P + + P + L N G V R + + L +L +KA S Sbjct: 92 PAPPGEETPPEVPFIFALDGLGDPGNFGTVCRTLRSTGLDELWYTKGSIDPYGDKAIRSG 151 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +R F NL+ + A AR K L Q Sbjct: 152 LGVQFAL-KLRCFENLE-------TLRAAAARF-GYDKVFLTDPHQGESCFTAPDLFQRS 202 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E G+ ++A + ++ P+ + SLN +QA + ++E + + Sbjct: 203 VVVIGGEANGVN--DLAAARR-VTIPMPGNYESLNAAQAATVFLFEYVRRLTTA 253 >gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium azorense Az-Fu1] Length = 247 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 18/161 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +++L +N+G + R ++ + L R +E +S A + + Sbjct: 96 KGILLVLDHITDPQNVGSIMRTAEILGVSGIILPKERSSPINEVVVKASTGAVFYLPIAK 155 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V S L++ ++ A + N + P + ++ G E Sbjct: 156 VGSLRNTLEKFKKKGGWVVAV-EKGGKNIHEIDFPF--------------PLALVVGSEG 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G++ + ++ + S P+ S N+S A + +WE + Sbjct: 201 KGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEVFK 241 >gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 169 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + I D++ +Y + +++ V E + +FG+E Sbjct: 60 YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107 Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172 GL + I P N +LN+S + ++++E + Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEVLRQQ 152 >gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp. HTCC2170] Length = 176 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 10/162 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +++L + + NIG V R F + ++ L P + R ++ A + Sbjct: 19 KTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTALGATESV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 L E I +L + + + + + +LNE I ++FG Sbjct: 79 SWEYRKDTL-ELIKELQ--------ADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E G++ E ++ S+ ++ P SLNIS + +++W+ Sbjct: 130 EVKGVSQEVVSASDVVLEIPQFGTKHSLNISVSAGIVIWDFW 171 >gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758] Length = 288 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 26/168 (15%) Query: 18 ILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 IL + Q N+G + R A N + L++P P +A S I + Sbjct: 129 ILENVQNPTNVGAIFRSAAALNM---EAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIR 185 Query: 75 SNLK-----------EAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + +AIA+L Y T A + + E + + Sbjct: 186 DSNEMRCKREVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKE--------EKLA 237 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +I G E GL NE IAL + + P+ SLN++ A + W+ + Sbjct: 238 VILGNEGEGLENETIALCDYTVKIPMTHGVDSLNVAAASAVAFWQLGK 285 >gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102] Length = 480 Score = 62.0 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G V R+ + L R + A +A A + RV + +L E + Sbjct: 280 PHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSL-EKL 338 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 D + + E + L + SG V ++ G E GL+ Sbjct: 339 KDAGYRVIGLAG-------------EGDVTLPDVDLSGPLV-LVTGSEDQGLSLLTRRHC 384 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++ P+ + PSLN S A L V+E + + Sbjct: 385 DQLVRIPLRGVTPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 429 >gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586] gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586] Length = 380 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LVN S A ++ A+ V L +A+A Sbjct: 243 PHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEGGAEHV--KAISAEGLVDALAQ 299 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I T++ V P I+ G+E GL++ Sbjct: 300 FRAAGYTIVTTSSHKGTTLSQVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 345 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLNIS A +++ E Sbjct: 346 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 377 >gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243] gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA] Length = 283 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 34/163 (20%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ + LV P P +A S + R+ Sbjct: 136 NVGAIFRSAAALGI-DAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTG 194 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L E + +A T ++ + P A + + ++FG Sbjct: 195 GWAPDGVPLLHE-LGFKTAAFALT----DDSVPLDDPALNAE---------ERLALVFGT 240 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL ++ IA + + P+ SLN++ A + W+ Sbjct: 241 EGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 176 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 19/170 (11%) Query: 6 PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 + + K P+I++ V NIG V R F + +L L P + ++ Sbjct: 15 EEFKEQEKLPLIVVLDNVRSMH--NIGSVFRTADGFAIEKLYLCGITARPPHREIEKTAL 72 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQ 119 A + F +AIA L + + ++ ++AA + + Sbjct: 73 GATQSVAWAH-FETTVDAIASL----------KADGYHIIGIEQAAGSTMLNTYKPTYSK 121 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +IFG E G+++E +A + I P S NI + +++W+ Sbjct: 122 KYALIFGNEVNGVSDEVMAQIDECIEIPQFGTKHSFNIVISAGIVLWDFF 171 >gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506] Length = 284 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 26/177 (14%) Query: 7 QLQNSAKGPVIILV---DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L+ A P +LV + N+G V R + LV S +A ++ Sbjct: 124 PLERLAPKPNEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMG 183 Query: 64 ADCVIDSVRVFSNLKEA-----IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + S + EA A + T +++ + Sbjct: 184 SIF----AVPVSRVGEAAFIEWRAGCRAPLIGTHMSGATDYRKPDY-------------A 226 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E+ GLT+ + ++ P SLN++ A +M++E + Sbjct: 227 SKGSVLVMGNEQAGLTDALANACDTLVRIPQVGRADSLNLAVATGVMLFEARRGILE 283 >gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803] gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992 gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803] Length = 153 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 16/157 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75 +LV+PQ+ N G +AR T+L LV P ++ + V + Sbjct: 5 VLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFELGDRYLKRA--GLDYWPYVDLHYHN 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + +E I H+ R ++L V ++ G E GL Sbjct: 62 SCEEFIT--HW--------RGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQM 111 Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 LS ++ P+ + SLN++ + + ++E Sbjct: 112 MRDLSTQLLCIPMPHSEVRSLNLASSAAIALFEAGRQ 148 >gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 261 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 21/163 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSE--KARSSSANADCVIDSVR 72 ++L Q N+G V R+ + Q+ L W S+ +A + A +++S Sbjct: 117 TVVLDRLQDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAE 176 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +L +LA A + G + G E G+ Sbjct: 177 V-GDLDA-----------------LGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGV 218 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +A + P SLN++ A + ++E + + Sbjct: 219 GKALLARCSETRRIPQPGGQESLNVAAAAAICLYESLRQRGSA 261 >gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 269 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 27/174 (15%) Query: 7 QLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +L+ K P ++LV P+ NIG + R NL + + NP+ + SS Sbjct: 113 ELKFKNKNP-LVLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGC 171 Query: 65 DCVIDSVRVFSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V + N E IA L F A TA S P Sbjct: 172 --VFTNPIATGNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTP-------------- 215 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ E + + I P+ S+N+S + ++++E Sbjct: 216 --SAIVVGTEATGLSEEWLENATQNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 267 >gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 2503V10-D] gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 3008A-a] gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2052A-d] gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 143-D] gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 1401G] gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 2503V10-D] gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 2052A-d] gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners LEAF 3008A-a] gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners UPII 143-D] gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners SPIN 1401G] Length = 170 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 16/160 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L++ +A L A + S + K + E +N +FG+E GL Sbjct: 61 HDSLEDFLATLQ------ANDEMYLISKFSSKSYTDI--EYTDPTKNYYFVFGKETTGLP 112 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P++ + N++ +V ++++E + Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQ 152 >gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 297 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 9/169 (5%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++ + +L + N G V RA + + L + KA S+A + Sbjct: 122 ESVLDAGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRSTAGSL 181 Query: 66 CVID---SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----- 117 + V ++L EA + L + A L Sbjct: 182 FHLPVVLGAEV-AHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDSAYDL 240 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G +FG E GL+ E+ L++ ++ PV SLN+ A + ++ Sbjct: 241 GGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLY 289 >gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus 03BB108] Length = 247 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKGRGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii] gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii] Length = 153 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 12/163 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV PQ+ +N G VAR+ T L LV P K + D+V V Sbjct: 1 IVLVHPQIPQNTGNVARSCAATG-TPLHLVGPLGFELDNKKLKRA--GLDYWDNVAV--- 54 Query: 77 LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A+ +A + V E + + ++FG E GL + Sbjct: 55 ---ALHSTWDHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDW-LVFGAETSGLPPQ 110 Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ P+ + S+N++ A + ++E + +E Sbjct: 111 VRPVTVRYARIPIRDTHVRSINLAVAAGIGLFEAVRQLDAGAE 153 >gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 12/153 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +N+G +AR + +F + L +E A +S+ A + V + Sbjct: 94 VVLDRVTEPQNLGAIARTVESFGGVGILLPEKNSAPINEIALKASSGALFHL-MVSRVPS 152 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E++ + + + E I + +G+I G E G+ Sbjct: 153 LNESLITFKKLGGS-----------IYAVETGGKDIRNINFQKPLGLILGSEGKGIEKNL 201 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + LSN I+S P PSLN+S A + +W Sbjct: 202 LKLSNEIVSIPTVGKTPSLNVSVAAGIAIWSMF 234 >gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis] gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis] Length = 216 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 30/149 (20%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVRVFSNLKEAI 81 N+G +AR+ F +T+L LV R + + + S+++ + + R LKE Sbjct: 16 HNVGTLARSATAFGVTELILVG-RRDFNAFGSHGSTSHLRFRHFHSLLNAR--DYLKE-- 70 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + A+ +NE F ++ + G E GL+ +E + + Sbjct: 71 KECDICG-------------VEITDGALPVNEHPFK-KSTAFLLGNEGTGLSAKECEICD 116 Query: 142 AIISFPVNPLFP----SLNISQAVLLMVW 166 + P + SLN++ A +++ Sbjct: 117 FFVYIP---QYGRGTASLNVTVAASIVLH 142 >gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I VRV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 205 IIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301] Length = 246 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 32/173 (18%) Query: 15 PVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADC 66 P+++L V N G +AR+ L + P + +A SSA A Sbjct: 94 PLVVLFDGVTDVR-----NFGAIARSAECAGAHGL--ITPLKNSAPVNAEAIRSSAGALT 146 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I RV S LK A+ + A T ++R + I Sbjct: 147 TIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLLYDADFRR--------------PTVI 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + G E G++ E + L + ++ P+ SLN+S A +M++E + I Sbjct: 193 VMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQRIGPE 245 >gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147] Length = 250 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 23/183 (12%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59 + + + + P +LV N+G R + ++ P+D + Sbjct: 84 HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A + + V + L+E ++ T + P Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLFHYDIP------------ 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +NV + G E G+ +A++S P+ S+NIS + +++ E ++ Sbjct: 190 --ENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETRRQRVLRG 247 Query: 177 EKN 179 E Sbjct: 248 EAG 250 >gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32] gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32] Length = 155 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 19/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ P++ N G R N +L LV P +K + + VRV + Sbjct: 3 RVLFYQPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVRVHA 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L A L +YA TA +A L + ++FG E GL Sbjct: 62 SLVAAWEVLLPAKVYAFTA--------------SATRLYTDVAYTPGDVLMFGPESVGLP 107 Query: 134 N--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E + P+ P SLN++ + V+E Sbjct: 108 AAVQEAPEVTDRVRLPMLPTSRSLNLANTAAITVYEAWRQ 147 >gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21] Length = 150 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFN--LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L +P++ N+G V R + L+ P ++ + A ID V V Sbjct: 2 RIALFEPEIAGNVGNVMRLGACMGAGVD---LIEPLGFPWDDRRVRRA--AMDYIDHVEV 56 Query: 74 -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 F + A A + TT ++++ P + ++FG+E Sbjct: 57 VRHVSFEAFRAARAGQRLVLFTTRATQSSYDFAYRPDDI---------------LLFGKE 101 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+T+ A +A + P+ P SLN++ + L + E + + Sbjct: 102 SAGVTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQT 145 >gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album] Length = 368 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 10/149 (6%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R+ L + +++ + R S A+ +D + ++ + +E +L Sbjct: 183 GNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLD-IELWDSTQECFRNLK 241 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 +R + L E+ V + I+ G E+ G++ E + LS+ S Sbjct: 242 ------SRGYRIVTAHL---ESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGLSDLHCS 292 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIV 174 P+ + SLN+S A +++ + + + Sbjct: 293 IPMRGMVDSLNVSVAAGILMHHAVRDRTL 321 >gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium HTCC5015] Length = 264 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 27/171 (15%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADC----- 66 V++L N+G R+ + ++ P+D A R + A Sbjct: 112 PLVLVLDGVTDPHNLGACLRSANGAGVD--VVIAPKDKSAGLTAVSRKVACGAAEETPFI 169 Query: 67 -VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + R L E L + +R+ ++ L + ++ Sbjct: 170 QVTNLARTLKGLAE--RGLWIVGLADGEDRSLYEGRLD---------------GPMALVM 212 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL + I++ P+ SLN+S A + ++E + S Sbjct: 213 GAEGDGLRRLTRESCDEIVAIPMGGSVSSLNVSVAAGVCLYEVVRQRRAPS 263 >gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis MSMB43] Length = 262 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 AP L ++L Q N+G + R+ + + P + S K S+ Sbjct: 104 APALPARVADTSVVLDGVQDAGNVGSILRSAAAAGVKR-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G + Sbjct: 163 AHFLLD---IHEDID----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 209 VFGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262 >gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Neisseria meningitidis H44/76] gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis CU385] Length = 261 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 157 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 158 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 203 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260 >gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens SK114] Length = 249 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P +++L N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P +V Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLYHCDLPD--------------SV 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249 >gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 305 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 26/164 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--------SVRVFS- 75 N G V R+ + LV + K S+ + + + Sbjct: 155 PGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLFHLPILTMDESTFAQWCHE 214 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L A +Y T R+ P+ +VL +R F+ Q ++FG E GL Sbjct: 215 RGMTLVAA-----DVYGTKERS---------PRTLPVVLAQRTFAQQPTCVLFGNEARGL 260 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ I+S P+ SLN++ + +M+ +S V + Sbjct: 261 ETGMLEQADDIVSIPIYGKAESLNLATSASIMLMSMAMSSHVET 304 >gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB] gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica RCB] Length = 243 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 23/172 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 + ++ + P +LV N+G R + ++ P+D ++ A ++ Sbjct: 86 DVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVH--AVIAPKDRAVGLTDVAAKTAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + V V + L+E ++ T A + Sbjct: 144 GAAETVPYVMVTNLARTLRELQEREIWVIGTAG--------------EAESDLYAAEWPK 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E G+ + ++ P++ SLN+S A + ++E Sbjct: 190 ATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRR 241 >gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 274 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 14/158 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRV 73 P++++ + N+G + R LV +P+ + +S A Sbjct: 126 PILVIEGVEKPGNLGTILRTAEGAGFHT-VLVADPKLDLFNPNVIRASTGALF------- 177 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L+ + ++ IY +N+ +V P+ N + + ++FG E++GL+ Sbjct: 178 --TLEVYLGEIKLIYEILKKNQYRTLAV-TPEATKHYYNADLK--GKIALVFGSEQYGLS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ +S P+ SLN++ + ++++E + Sbjct: 233 TYARNNSDEYVSLPMFGESDSLNLAMSAGIVMYEVIRQ 270 >gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624] Length = 220 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 18/143 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIAD 83 N V R F + ++ + G + + A+ + ++R EA+ Sbjct: 46 HNTSAVVRTCEVFGVQTAHIIEEKYGKRLDSKIAM--GAEKWVTTIRYPHTQPCIEALRG 103 Query: 84 LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I AT P + + + FG ER GL+ E I+ ++ Sbjct: 104 QGYRIVAT------VPPPGATPLQEFDITPKS-------AFFFGTERDGLSQEVISQADE 150 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 ++ P+ SLNIS +V +++ Sbjct: 151 CLTIPMVGFTESLNISVSVAIIL 173 >gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 220 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 58/210 (27%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+P++ N G + R T L LV P +K+ + A +V V+ N Sbjct: 5 VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63 Query: 78 KEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERIFSGQNVG-------IIFG 126 + I T+ F + K L ++ +IFG Sbjct: 64 NQFIEKNGLA-DTSTTPEGVFAHDVGIDAVDKPHLHFLTKKAKKTYTQATYRDGDYLIFG 122 Query: 127 RERWGLTNEEIA-LSNAIISFPVNPL---------------------------------- 151 +E GL+ E +A ++ P+ Sbjct: 123 KESLGLSEELLAKHADECERIPMLQDSVSLVNREDWSQKHDALDGGGQYSHPVLLQQDIC 182 Query: 152 ----------FPSLNISQAVLLMVWECMEN 171 +LN+S A ++++E + Sbjct: 183 GNFIDPNEFSVSALNVSNAAAIVLYEALRQ 212 >gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri 100-23] gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri 100-23] Length = 169 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + I D++ +Y + +++ V E + +FG+E Sbjct: 60 YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107 Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172 GL + I P N +LN+S + ++++E + Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152 >gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae] Length = 272 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 33/181 (18%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + V + V+ N G + R + S KA +SA Sbjct: 108 SAREALKGNPSLVCVAVETGEPGNAGTLVRVADAMGADCVIFAGTTVDPQSPKAVRASAG 167 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---- 119 + + + V R + K + + + G+ Sbjct: 168 S---LFHIPVV------------------REPDMQKVWQILRARNVQMLATAAQGEINLD 206 Query: 120 --------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E GL +E ++ ++ + P+ SLN++ A + ++E ++ Sbjct: 207 TAGELLEKPTAWLMGNEAHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMYESSKS 266 Query: 172 S 172 Sbjct: 267 Q 267 >gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri DSM 20016] gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 169 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L +P N G +AR N T+L L+ P +K + D V++ Sbjct: 5 IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + I D++ +Y + +++ V E + +FG+E Sbjct: 60 YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107 Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172 GL + I P N +LN+S + ++++E + Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152 >gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 270 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 12/150 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ F + + L+ S +A +S + + +R L EA A L Sbjct: 133 PGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLIR----LDEA-AYL 187 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + T R + A + E + G ++ G E+ GL A N ++ Sbjct: 188 DWHRGWTGR--TVGTHLR-----AELQPESVERGSATLLVMGNEQSGLPARIAATCNQLV 240 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174 P+ SLN++ A +M++ ++ Sbjct: 241 RIPMRDGADSLNLAAATAIMLYAVTASAGA 270 >gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614] gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614] Length = 157 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 13/159 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I L P + +N G + R +T + L+ P S+ A + ++ + Sbjct: 2 PDIALYQPDIPQNTGTILRLAACMGVT-VHLIEPAGFPISDSALKRA--GMDYLERAAMV 58 Query: 75 SNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ A D R+ +L K + + ++ GRE G+ Sbjct: 59 RHISFAAFDDWR-------RSERRRLVLLTTKSDLPYADFTFETDDI--LMMGRESSGVP 109 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + AL++A ++ P+ SLN++ + +++ E + S Sbjct: 110 EDVHALADARLTIPMADGMRSLNVAVSTGMVLGEALRQS 148 >gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. Y412MC10] Length = 256 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + L R + +SA A + RV + Sbjct: 109 LDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQ 168 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + ++ T V+ + L + V I+ G E G+ Sbjct: 169 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNENKGMGRL 215 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++++E + Sbjct: 216 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 252 >gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus] Length = 249 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A I +RV + Sbjct: 97 VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + +++ T A N +++ + + I+ G E G+ Sbjct: 157 LANTIETLKDNGYWVVGTEANNSTDYREMDVAM--------------PLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I+ P+ SLN S A LM++E Sbjct: 203 SRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYEVFR 240 >gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT] gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT] Length = 160 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 32/166 (19%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 I+L +P++ +N G + R N ++L L+ P +K+ + V Sbjct: 9 IVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFRIDDKSLKRA--GLDYWPHLDVE 63 Query: 73 VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + + I D + +TT A ++ + I+FGRE Sbjct: 64 VHESFDDMIKKYPDANIYLSTTK--------------EAKYHHDEVKYKTGDFIVFGRES 109 Query: 130 WGLTNEEIALSNAI---ISFPV-NPLFPSLNISQAVLLMVWECMEN 171 GL E + I P+ SLN+S V ++ +E + Sbjct: 110 SGLP--EYIRDRYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQ 153 >gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 278 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 11/174 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 Q A ++IL Q N+G + RA +T + + + + K S+ + Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V +L +A+ R + + A ++ + G + G Sbjct: 176 VPFV-YVEDLADAVR----------RVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGN 224 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E GL++E L++A I P+ SLN + A ++++E + + Sbjct: 225 EANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGQKID 278 >gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 254 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251 >gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis] gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis] Length = 334 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 16/146 (10%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + +V+ R S A+ +D + ++ + +E + Sbjct: 149 GNVSAAFRSADALGFQSVHVVSCDSSKRYRDNRHVSMGAEKWLD-IELWDSTQECFEVLK 207 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + ++ + I+ G E G+++E + LS+ Sbjct: 208 SRGYRIATT----HVGMDAVSIYDM--------DWSCPTAIVVGNENRGISDEALELSDL 255 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 S P+ + S N+S A +++ + Sbjct: 256 HCSIPMKGMVDSFNVSVAAGILMHQA 281 >gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 183 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 27/172 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 ++LV P++ N G +AR ++ L LV P + + S V+ Sbjct: 23 VVLVTPKIPGNTGCIARTCAA---SRVPLHLVAPLGFSLDDAQLKRA--GLDYWKSVCVK 77 Query: 73 VFSNLKEAIADLHFIYATTARNRNN----FKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + A A R + V K A E ++FG E Sbjct: 78 VHDDWD----------AFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAE 127 Query: 129 RWGLTNEEIALSNA---IISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176 GL + + A + P++ SLN+S + + V+E + S Sbjct: 128 TTGLPDAAMEACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQLDGSP 179 >gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. G11MC16] Length = 246 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L + + N+G + R + + R + +S A I RV + Sbjct: 98 VLDELEDPHNLGAIMRTADAVGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLA 157 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E ++ T A +++++S+ + ++ G E G++ Sbjct: 158 RTIDELKERGVWVAGTDAAAKDDYRSL--------------DGTMPLALVIGSEGKGISR 203 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + + P+ SLN S A L+++E E Sbjct: 204 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 246 >gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 220 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 25/176 (14%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L+D N+ + R + + V+ ++++ +V ++ Sbjct: 22 VLLDQVHKPHNLSAILRTCDAVGVPRAHAVS---RHQDFTVHRAASSGTGQWVAVETHAD 78 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERW 130 L A+ A K A L+E+ + ++ G E+ Sbjct: 79 LPAAVR---------AVQGQGMKVY------AAHLSEQAVDYRQVDYTKPCCLLLGAEKE 123 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 G++ E AL++ + P+ L SLN+S A ++++E + + + Sbjct: 124 GVSEEGAALADGHVIIPMFGLGASLNVSVAAAVILFEAQRQRLAAGQYETPRMAEA 179 >gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM 22836] Length = 263 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 14/157 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS 75 IIL + N+G V R +V +P + A SS + + S Sbjct: 118 IILESVEKPGNLGAVLRTADA-AQADAVIVCDPATDIYNPNAIRSSVGCVFTVQTAVCTS 176 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +EA++ L R+RN A + A + + I+ G E GLT Sbjct: 177 --QEALSYL--------RSRNIK--AYAAELNASQWYQDTDFTKPSAIVMGTEADGLTLF 224 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + P+ SLN+S + ++ +E M Sbjct: 225 WLDNADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQR 261 >gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6] gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus veneficus SNP6] Length = 227 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 13/149 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G R F + + R +E SA A + R N+ A+ Sbjct: 91 EDPRNLGAAIRTAEFFGCAGVVIPKRRAVQVNETVVKVSAGAALHVSIAR--DNITNALK 148 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + V+ + + E ++ G E G++ L + Sbjct: 149 ----------KAKKFGIKVIGAELDGENI-ENADLTPPAALVIGGEDRGISQPVRKLCDF 197 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P SLN+S A ++++E ++ Sbjct: 198 LVKIPGRGKVGSLNLSVAAGILMYEFSKS 226 >gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801] gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801] Length = 260 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 60/178 (33%), Gaps = 26/178 (14%) Query: 5 APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 A + P I IL Q N+G + R + + L + + K Sbjct: 95 ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113 SSA A + + L I + AT N + V Sbjct: 155 LRSSAGAWFHVPLIVSCD-LSATIKHYQASGVQVIATLPTATNTYWDVDL---------- 203 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 Q I+ G E GL+ E +L++ +S P+ SLN++ A L+++E Sbjct: 204 ----TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQ 257 >gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42] gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I V+V + Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L E ++ T A R +++S+ + ++ G E G+ Sbjct: 161 RTLDEMKERGIWVVGTDASAREDYRSM--------------DGKMPLALVIGSEGRGMGR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens GS-15] Length = 250 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 11/167 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G ++ L Q N+G + R+ + + R + S+A A I + Sbjct: 95 RGLILALDGVQDPHNLGALIRSAACAGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQ 154 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +NL +A+ +L F A AA L ++ SG NV I+ G E G+ Sbjct: 155 V-TNLAQALDEL---------KEAGFWIYGAADSAASSLYDQDLSG-NVVIVIGSEGEGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + +++ P+ SLN S A ++++E + + S +N Sbjct: 204 RPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEVLRQRLAFSPQN 250 >gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM 1100] gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM 1100] Length = 268 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 15/165 (9%) Query: 10 NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + K P+I++++ + N+G + R + + L +P+ W + +S A + Sbjct: 116 SPGKNPLILVLETVEKPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTV 175 Query: 69 DSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + +A+ L A A + + + G Sbjct: 176 PVFTVAA--ADALNWLQMHKIAILATHLEASYPYFD-----------CDLSGAIAFVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++N + + + P++ S+N+S + ++++E + Sbjct: 223 EANGISNFWVEAAQQRVIIPMHGQVDSMNVSVSTAILLFEALRQR 267 >gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum] Length = 591 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 75/195 (38%), Gaps = 26/195 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-------VNPRDGWPSEKAR 58 L ++A+ ++ L + N+G +AR F + + + S +A Sbjct: 368 ESLGSAARPIIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINPFSGEAY 427 Query: 59 SSSANADCVIDSVRV-----FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAA 108 SS A ++ V + ++ E + + + T++ L Sbjct: 428 RSSRGA---LEHVNISIINTYTETMECLNEFTSNGWELVV-TSSNLELKNNVTLY----- 478 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ + + ++FG E G+ + + S ++ P L SLN++Q+ +++ EC Sbjct: 479 SKGSNKLLGLKPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVILAEC 538 Query: 169 MENSIVSSEKNVKEQ 183 + E +++ Sbjct: 539 WRIQGKNLESPDEKR 553 >gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 275 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 12/153 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVF 74 +L D + N G V RA + L + K SSA + VI + + Sbjct: 120 VLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNASLV 179 Query: 75 SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A+ ++ TT ++ P+ V G +FG E GL+ Sbjct: 180 D-VHGALKMAGIPLFGTTPYADLTLDDLVEPQGPTSV-------GAPHAWVFGNEAQGLS 231 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E+ ++ ++++ P+ SLN++ A + ++ Sbjct: 232 VEDQSMCDSLVRIPMYGRAESLNLAMAATICLY 264 >gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 151 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV+P++ N G + R ++L L++P ++K S V V + N Sbjct: 4 VVLVEPEIPNNTGNIGRLCVGTE-SRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEYQN 62 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E I D ++ ++ + ++ L G ++FG+E GL+ Sbjct: 63 VEEWIQQIPDHSRVFLMSSHSEKSY------------LENEFQDGDW--LVFGKESVGLS 108 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +A ++ P++PL S NI+ +V +V E Sbjct: 109 AAFMARFENHLTIPMSPLIRSFNIANSVAFVVGEAKRQ 146 >gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198] gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198] Length = 154 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 23/161 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L++P++ +N G + R +L L++P EKA + + +R + N Sbjct: 4 IVLIEPRIPQNTGNIGRLCVAAG-ARLHLIHPLGFSIDEKALKRAGMDYWRVLDLREWKN 62 Query: 77 LKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+E HF+ +T A+ + + FGRE G Sbjct: 63 LQEFWESHPFDHKHFLLSTKAKKIYYEAPFC----------------RECFLYFGREDAG 106 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + + P+ S+N++ +V ++++E + Sbjct: 107 IDSGILQTYAKQVYKIPMQKNIRSINLATSVGVVLYEAIRQ 147 >gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 246 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 23/171 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L++ A+ +++L N+G R + +V P+D + R + A Sbjct: 91 LESEAQPLILVLDGVTDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 V+ +++ +NL + L +I T K++ Sbjct: 149 EVVPLIQI-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYDVDLKGP-----------T 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEIVRQR 244 >gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64] Length = 177 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N G + R + +L ++ P K S A ++ ++ Sbjct: 4 IVLFEPEISPNTGNIIRTCFALG-AKLHIIKPIGFDLDPK-YLSRPAAGRLLSDIQHEVH 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + E + + Y T R K+ + + + V I+FG+E G Sbjct: 62 ASYKDFYEKYKNKNIFYLT----RYGLKTYTD-----VDFKKEYKKNKEVWIMFGKESTG 112 Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ S+N++ V ++ +E M Sbjct: 113 IDKEILQTHLENCLRIPMMSEMRSINLANTVAIVGFEIMRQ 153 >gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198] Length = 247 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 18/173 (10%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P +++L N+G R+ + + + R + A+ + A Sbjct: 87 PDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + ++V + L+ + +I T A + + Sbjct: 147 AESVPLIKVTNLARTLRFLQEENVWIVGTAG--------------EADHTLYQSKLTGPM 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + +IS P+ SLN+S A + ++E M I+ Sbjct: 193 ALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMRQRII 245 >gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana] Length = 368 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 24/153 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72 ++LV PQ+ N G +AR + L LV P G+ + AR A D V+ + Sbjct: 84 VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVKAHS 141 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +E R + K ++A + ++ ++FG E GL Sbjct: 142 SWAEFQEYF-----------RLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGL 190 Query: 133 TNEEIALSNA------IISFPVNPLF-PSLNIS 158 E ++ N + P+ + LN+S Sbjct: 191 PPEALSDCNHEPYGGGTLRIPMVETYVRCLNLS 223 >gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis NIES-39] Length = 312 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 18/173 (10%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +T Q +++ PV++ V N+G + R L L R + Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +A A RV + E + +IY T A ++ + + Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVA---GEYQPLY-----------KAD 239 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + ++ G E GL++ + ++S P++ + PSLN+S A + ++E Sbjct: 240 LSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292 >gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 153 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 19/165 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + +P++ N G R T L LV P E + + V V ++ Sbjct: 3 VAFFEPRIPGNTGNAIRMCAGTGAT-LHLVEPLGFELDEARLRRAGLDYHDLAHVVVHAS 61 Query: 77 LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + L ++A T R + + V + ++FG E GL Sbjct: 62 LAALLDALPASRVWAFTTRATDRYTDV--------------AWRDDDVLLFGPEPTGLPA 107 Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +A + P+ P S+N+S A + +E Sbjct: 108 DVLAHPRVTGEVRIPMLPGRRSMNLSNAAAVATYEAWRARGFPGG 152 >gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58] gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58] gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis WUE 2594] gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis H44/76] Length = 250 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis N1568] Length = 250 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + +++P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVISPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58] gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58] Length = 266 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 17/174 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP A L S+ I+ + N+G + R L L++ S ++ + Sbjct: 104 LTPLA-ALDRSSADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162 Query: 61 SANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 S A I R L + T+ A + Sbjct: 163 SMGALFTQSITQARWEEFLPWLRGGAGQLIGTS--------------LKATQDYQEPAYQ 208 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL + A + ++ P+ SLN + A +M +E + Sbjct: 209 SPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSLNAAVATAVMAYELLNQR 262 >gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 254 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251 >gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas suwonensis 11-1] Length = 248 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +++L Q N+G R+ T + + + + R +SA A + V+ Sbjct: 98 KALLLVLDGVQDPHNLGACLRSALAAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQ 157 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L+E +IY V NV ++ G E Sbjct: 158 VTNLARTLRELQKQGVWIYGLAGEVDETLYGVDL--------------KGNVALVLGGEA 203 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + ++ P+ SLN+S A + ++E + Sbjct: 204 DGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFEAVRQR 246 >gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802] Length = 260 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 24/177 (13%) Query: 5 APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 A + P I IL Q N+G + R + + L + + K Sbjct: 95 ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154 Query: 58 RSSSANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 SSA A +I S + + +K A + AT N + V Sbjct: 155 LRSSAGAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDL----------- 203 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 Q I+ G E GL+ E +L++ +S P+ SLN++ A L+++E Sbjct: 204 ---TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQ 257 >gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1] Length = 283 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 34/163 (20%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ + LV P P +A S + R+ Sbjct: 136 NVGAIFRSAAALGI-DAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTG 194 Query: 74 ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L E + +A T ++ + P A + + ++FG Sbjct: 195 GWAPTGVPLLHE-LGFKTAAFALT----DDSVPLDDPALNAE---------ERLALVFGT 240 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL ++ IA + + P+ SLN++ A + W+ Sbjct: 241 EGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283 >gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis] Length = 167 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 17/163 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71 I+L +P++ N G + R N L L+ P G+ + R A D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61 Query: 72 RVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ L+ E ++ + T AR L K N G ++FG E Sbjct: 62 DYYAFLESEGLSPDNVQSPTGARL-----FALTTKGTPAHSNVSYQDGDY--LLFGPETR 114 Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + I P+ S+N+S V ++V+E Sbjct: 115 GLPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157 >gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca] Length = 307 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 18/173 (10%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +T Q +++ PV++ V N+G + R L L R + Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +A A RV + E + +IY T A ++ + + Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVA---GEYQPLY-----------KAD 239 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + ++ G E GL++ + ++S P++ + PSLN+S A + ++E Sbjct: 240 LSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292 >gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str. MIT 9202] gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str. MIT 9202] Length = 160 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 26/164 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76 L +P++ +N G +AR+ FN+ L L+ P +K + V V + N Sbjct: 5 LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRA--GLDYWPLVTVNKYEN 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +A ++ + + K I L + F ++ ++FGRE GL + Sbjct: 62 FEKFLA-----------SKATKRIISFSKRNGIYLKDFKFKQDDI-LLFGREDLGLPDYI 109 Query: 137 IALSNAIISF---------PVNPLFPSLNISQAVLLMVWECMEN 171 I ++ +IS SLN+S A + ++E + Sbjct: 110 IDKTDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQ 153 >gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum] Length = 1145 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 47/188 (25%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----------VNPRDGWPSEKAR 58 N + V++L + NIG + R F + L L VNP +R Sbjct: 317 NVVRPIVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYLSSR 376 Query: 59 SSSANADCVIDSVR----------------VFSNLKEAIADLHFIYATTARNRNNFKSVL 102 + + D + + R + S AI+D Sbjct: 377 GAIEHLDVIPITARNTAINMIKEFAEQKWEIVST-ATAISDKALTL-------------- 421 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 + + + +IFG E G+ LS A ++ P L SLN+SQ+ Sbjct: 422 -----FSEGSALTLGTKPLLLIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAA 476 Query: 163 LMVWECME 170 +++ EC Sbjct: 477 IILAECWR 484 >gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510] Length = 279 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%) Query: 1 MTPYAPQLQNS-----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWP 53 M P L ++ A P++IL N+G + R F L + LV+ P P Sbjct: 106 MAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFFGLPR-VLVSDHPGQALP 164 Query: 54 SEKARSSSANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 SE A + ++ + + + H ++ T + + + Sbjct: 165 SEAAYRVAEGGFEWVALERAPALPAVLKRLRASHRLFGTAL---DQSRPAVDAGALTGWR 221 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + + ++ G E G+ +A A+++ P + SLN++ Sbjct: 222 GK--ADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAA 267 >gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida FTG] Length = 248 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+ A + + P+ SLN+S A + ++E + I Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247 >gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548] Length = 248 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+ A + + P+ SLN+S A + ++E + I Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247 >gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 321 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A ++ +A+ V+IL D N+G + RA+ + L++P P + + Sbjct: 159 PTAAEVLGTARR-VVILEDVNNHTNLGSIFRAVAGLGV-DAVLLSPTCADPLYRRSVRVS 216 Query: 63 NADCVIDSVRVFSNL---KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++ L +A+A++ R L P A+ + +R+ GQ Sbjct: 217 MGEVF---AVPYATLGPWPDALAEV--------RAAGFSVLALTPAPDAVPI-QRLEPGQ 264 Query: 120 NV--GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GLT E + S+ + P+ SLN++ A + WE Sbjct: 265 RARAALLLGAEGSGLTREAMEASDVRLVIPMRRSVDSLNVAAATAVACWELGR 317 >gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM 30120] Length = 245 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P ++IL N+G R+ + +V P+D + A+ + Sbjct: 86 PDLLESTESPFLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +RV + A T R N V EA L + +G + Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHNLYQSKLTG-S 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V ++ G E G+ + +IS P+ SLN+S A + ++E + I Sbjct: 191 VALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRITK 245 >gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia bercovieri ATCC 43970] Length = 246 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRALKA 246 >gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral taxon 786 str. D14] Length = 250 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 21/165 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +SA A + RV Sbjct: 101 ILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLV 160 Query: 75 SNLKEAIADLHFIYAT-TARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ +I T ++S VL V I+ G E G Sbjct: 161 QTMEQLKEAGVWIVGTDVGAKEEMYRSGNVLT---------------GPVAIVIGNENKG 205 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+N SLN S A ++++E + Sbjct: 206 MGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIMYEVLRRRRAEG 250 >gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 265 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81 + N+G + R + L +P + SS + ++S L+E + Sbjct: 125 EKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLGTVFTLP---IWSATLEEVL 181 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T V P+ +++ E Q + ++FG E+ GLT+ + Sbjct: 182 Q--------TLSEEKWQVFVTTPRASSLYFCE--NYNQPLALVFGSEKDGLTSSWLNGDF 231 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + IS P+ SLN+S AV + +E + VS Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVIRQRWVS 265 >gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group] gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group] gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group] Length = 236 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 34/178 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P + N G +AR + L LV V+ V++ + Sbjct: 75 VVLVSPLIPGNTGSIARTCAASAVG-LHLV----------------GVRYVV--VKIHDS 115 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E D ++ K +LA + ++ ++FG E GL Sbjct: 116 WNE-FRDYFM-------KQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSA 167 Query: 137 IALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 + + I P+ + LN+S +V + ++E E A Sbjct: 168 LEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEA 225 >gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda EIB202] gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella tarda FL6-60] Length = 247 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 21/177 (11%) Query: 6 PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 P L P IL N+G R+ + +V PRD + A+ + Sbjct: 86 PDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAGV-DAVIV-PRDRSAQLNATAKKVA 143 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + A T R + + V EA L + +G Sbjct: 144 CGAAENVPLIRVTN------------LARTMRLLQQESIWIVGTAGEADHSLYQSRMTGA 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 192 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAKA 247 >gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia rustigianii DSM 4541] Length = 245 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 20/175 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V P+D + + + Sbjct: 86 PDLLESTESPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A I +RV + A T R N V EA L + SG + Sbjct: 144 GAAENIPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHTLYQSKLSG-S 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 IALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRTAK 245 >gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola ATCC 35405] Length = 258 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL N G + R+ F + + + + E SA A + V V + Sbjct: 112 VVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTN 171 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + T R + + L F + V +I G E G++ Sbjct: 172 -----------LVRTVERLKKEGFWIYGADAGGKALPNLTFPKKTV-LIMGNEGRGMSRL 219 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + I+S P SLN+S A ++++E Sbjct: 220 VEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254 >gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema brennaborense DSM 12168] Length = 262 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 19/163 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDS 70 V++L NIG + R+ ++ L V DG SE +SA A + Sbjct: 114 VVVLDSVTDPHNIGAILRSCDQLGVSLAVLPERRGVKNVDG--SEVISRASAGASAWVP- 170 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + SNL A+ L ++ + + + +I G E Sbjct: 171 ISIASNLVRAVGQLK-AAGFWIYGADSGGTPVTDVDFPP----------RTVLIMGSEGS 219 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + I+S P SLN+S A +++++ S+ Sbjct: 220 GISRLLAEQCDRIVSIPTCGKLDSLNVSVAAGILLYDIYRKSL 262 >gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + +N+G + R+ + + L R S A +SA A I RV NL A+ Sbjct: 107 EDPQNLGALLRSADGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVV-NLVRALE 165 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + E + + ++ GRE GL + + Sbjct: 166 QL----------KEQNIWCVGLDERGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDH 215 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++ P+ SLN+S A ++++E V + Sbjct: 216 LVRIPMAGGVSSLNVSAAGAVVLYEAARQRRVGKPETAP 254 >gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC 7425] Length = 387 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R L + R + +A A RV NL +A+ L Sbjct: 230 PHNLGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVV-NLNQALEQL 288 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +IY A K + + + + V+ ++ G E GL+ Sbjct: 289 KAAGFWIYGMAATA---AKPIYSVEFSGPVV-----------LVVGAEGTGLSLLAQRYC 334 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++S P+ PSLN S A + ++E +S + Q++ Sbjct: 335 DQLVSIPLLGKTPSLNASVATGMALYEIFRQRSSTSVRQPLPQHS 379 >gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135] Length = 269 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+++ NIG + R+ + + L + +A S + ++ V Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDR 181 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L++ A +R+ + P + + ++ G E GL Sbjct: 182 PLEQLKELGFRTAAMALTDRSV--PLDYPP---------LKEEPRLALVMGTEGDGLPEA 230 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I ++ ++ P+ SLN++ A + WE Sbjct: 231 AIEGADYVVRIPMAHGVDSLNVAAASAVAFWELR 264 >gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279] Length = 342 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 19/174 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 V++L N G + R+ + + N R + +SA A + Sbjct: 181 PADRPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHV 240 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +V N+ A+ DL ++ T E A + V ++ Sbjct: 241 PIAQV-PNIARALEDLKSAGFWVGGAT--------------EHAEGICWDAPFEGRVALV 285 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E G++ + + P SLN++QA + +E + + + ++ Sbjct: 286 MGSEGDGISRLVLDTCDFTTKLPQRGATESLNVAQAATALCFEWLRRNQTALDR 339 >gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] Length = 243 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + AR + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia intermedia ATCC 29909] Length = 246 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLESVDMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRLLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRALKA 246 >gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri] Length = 244 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 10/155 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L N G + R FN+ + +++ R + +SA A + RV +NL Sbjct: 99 VLDQISDPHNFGAILRTCDLFNVDGVIILDKRQVDINATVAKTSAGAFNYVPVCRV-NNL 157 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 AI L + F + + +I G E G++ + + Sbjct: 158 TNAIEYL---------KKQGFWIYATSLNTKAQNVSELKYDIPICLIVGNEGTGISAKLL 208 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ I P SLN+S A +++++ Sbjct: 209 KHADFNIYIPTAGHLDSLNVSVASAILIYQIKMLQ 243 >gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240149] Length = 234 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + ++ A Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 130 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 176 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233 >gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 23/178 (12%) Query: 4 YAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 L+ S+K P+I++ + P+ NIG + R L + + NP+ + SS Sbjct: 103 RIENLRLSSKTPLIMIAEAPEKPGNIGALLRTADAAKLDAVIIANPKTDLYNPNIIRSSV 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSG- 118 VF+N TT+ + K+ K A L + + G Sbjct: 163 G--------TVFTN--------SIGTGTTSEIIDFLKN-NNIKIYAAALQDSSSYLAEGF 205 Query: 119 -QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G E GL+ E ++ II P+ SLN+S + ++++E +S Sbjct: 206 KEATAIVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIFEAKRQRQLS 263 >gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium ICC168] Length = 243 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P +++L N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIIPRDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +RV + L+ + + + ++ T A + Sbjct: 146 AESVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTLYQSKLTGP 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVRQR 242 >gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 286 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 15/176 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q+ + V +L + N G V R + L + + KA +S + Sbjct: 117 EQVLAARPKLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRASVGSL 176 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSG---QNV 121 + ++EA+ AR R VLA A L++ + G Sbjct: 177 FHLPVATGVP-VEEAV----------ARLRAAGVRVLAADGAGERDLDQELDQGTLEGPC 225 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 226 AWVFGNEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLYASARAQRSPRG 281 >gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601] gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601] Length = 249 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R + + N R ++ +S A I VRV + Sbjct: 100 ILLDELEDPHNLGSIMRTADAVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNL 159 Query: 76 -NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + D I+ T A+ ++++++ +GI+ G E G++ Sbjct: 160 NKTIDVLKDRGLWIFGTDAKGSSDYRTMDV--------------DMPLGIVIGSEGAGMS 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A ++++E Sbjct: 206 RLVREKCDFLVHLPMKGKVTSLNASVAASILLYEVYR 242 >gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11] gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11] Length = 159 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ N Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + L A + + + A + + ++FG E GL + Sbjct: 63 YAAFLEYL-------ANDSDVEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADL 115 Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + P+ P SLN+S +V ++V+E Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152 >gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 320 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G + R++ F + + R + A +SA A I + Sbjct: 170 PLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAK- 228 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL A+ D R F + + + L + + + + ++ G E GL+ Sbjct: 229 AGNLTRALEDF---------KRAGFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLS 279 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+S P++ SLN A + ++E Sbjct: 280 RLVRETCDQIVSIPMSSAVESLNAGLATGVALYEIARQR 318 >gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 284 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 13/155 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81 N+G R+ + LV P P ++ S + R+ + + Sbjct: 137 NVGAAFRSAAALGI-DAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGL 195 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 LH +TA ++ + + + + + + + II G E GL IA + Sbjct: 196 ERLHACGFSTA-------AMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCD 248 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ SLN++ A + ++ +S S Sbjct: 249 FTVRIPMRHGVDSLNVAAASAVAFYQLCSSSNSSG 283 >gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 254 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251 >gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L P + +N G + R L ++ P S++ + +D V + Sbjct: 3 IALFQPDIPQNTGTILRLCACLGLAA-HIIEPAGFPVSDRHFRRA--GMDYLDQVSITRH 59 Query: 74 --FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +E A + TT K+ ++ ++ ++FGRE Sbjct: 60 VSWPQFEEWRAAQGCRLLLFTT-------KAATDYRDFRYQTSDI--------LLFGRES 104 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+T+ + ++A + P+ P SLN++ + E + Sbjct: 105 AGVTDAVVEAADARLVIPIAPGLRSLNVAMTAAMAAGEALRQ 146 >gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia mollaretii ATCC 43969] Length = 246 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S + P +++L N+G R+ + +V PRD + A+ ++ Sbjct: 86 PALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + ++V + L+ +I T A + Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E G+ + +IS P+ SLN+S A + ++E + + + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRSLKA 246 >gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78] gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78] Length = 273 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 22/157 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLK 78 N+G R + L+ PR P +A S A + R+ +K Sbjct: 131 ANLGAAFRNAAALGV-DAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIK 189 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A A +R+ L +E + ++FG E GLT + Sbjct: 190 QA--GFTLA-AFCLSDRSLTLDALVAREDP-----------RLALLFGSEGPGLTPAALT 235 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + P+ SLN++ A ++ + +NS Sbjct: 236 AADLHVRIPMQAGIDSLNVAAATAVVFYATRKNSPSG 272 >gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri DSM 1131] Length = 249 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 20/173 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L + P +++L N+G R+ + +V P+D + A+ + Sbjct: 86 PDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +RV + A T R N V EA L + +G + Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHNLYQSKLTG-S 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 191 IALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRL 243 >gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni KF-1] Length = 256 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75 +L N+G R + ++ P+D A + ++ A + V + Sbjct: 104 VLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 161 Query: 76 ---NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LKE +I T+ +R+ ++ L ++ G E G Sbjct: 162 LARTLKELKERGIWIIGTSGDADRHLYQMDLT---------------GPTALVLGAEGDG 206 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +A++S P+ SLN+S A + ++E + + ++ Sbjct: 207 MRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQRLAAA 251 >gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 238 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 18/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV+P N+G + R F + + + P + K SS A + + F + Sbjct: 95 IVLVNPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKVVRSSMGALFRLRH-QYFES 153 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKE---AAIVLNERIFSGQNVGIIFGRERWGLT 133 E + N + + + ++FG E GL Sbjct: 154 FSE-------------YQKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFGNEATGLD 200 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +++ +II P + SLN++ AV + + Sbjct: 201 DSYLSVGTSII-IPQSEEVDSLNLTIAVGIGTY 232 >gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1] Length = 352 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + L+ S A ++ A+ V ++ EAI Sbjct: 215 PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLEAIEQ 271 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 I T++ P+ + ++ G+ER GL++ ++ Sbjct: 272 FRSAGYTIVTTSSHEGTPLFKATLPR--------------KMVLVLGQERDGLSDAALSS 317 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ +S SLN+S A +++ E Sbjct: 318 ADLSVSINGTGNVESLNVSVATGVLLAEWWRQ 349 >gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185] gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185] Length = 243 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P+L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PELIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris HaA2] Length = 150 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L P + +N G + R A N + ++ P S++ + +D + + Sbjct: 2 RIALYQPDIPQNTGTLLRFCACLNV---EAHIIEPAGFPTSDRHFRRA--GMDYLDQITI 56 Query: 74 F-----SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 S ++ AD I TT L + + + ++ G Sbjct: 57 VRHDSWSKFEQWRKDADCRVILLTT----KGVTPYLEQRYQSTDV-----------LLLG 101 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 RE G+ +E A ++A I P+ P F SLN++ A L+V E + + Sbjct: 102 RESAGVPDEVAAAADARIVIPMQPGFRSLNVAMAAALVVGEALRQT 147 >gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509] Length = 243 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12] Length = 249 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L ++A G ++LV Q N+G R+ +T + + + + R +S+ A Sbjct: 90 DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIISKDKSVGINATVRKTSSGA 149 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + +L+E +IY + A+ L NV Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E GL + + P+ SLN+S A + ++E + + Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248 >gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 253 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 21/165 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN+S A + ++E + V + Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249 >gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211] gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211] Length = 157 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 19/166 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S P I L +P + +N + R +L ++ P S+K D Sbjct: 5 PSILRPKIALYEPDIPQNTAAIIRTCACLG-AKLEIIEPCGFHLSDKRFKRVVMDYMDWD 63 Query: 70 SVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + ++ + +A + + TT A V +N I+FG Sbjct: 64 KINIYQSSDKFFKAKKNQRIVLMTT---------------KASVSYTEFKFEKNDTILFG 108 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 RE G+ L N + P++ SLNI+ +V +++ E + + Sbjct: 109 RESSGVPESVHQLINDRLKIPMSEDTRSLNIASSVAIILAESLRQT 154 >gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC 51908] Length = 231 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 24/166 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVF--SNLKEAI 81 NI V R + Q+ V WP + R +++ + + +++ + + ++A Sbjct: 32 NIAAVIRTADAVGVHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYHMDDAQQAF 86 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + ATT E A+ E I + II G ER G++ E IA + Sbjct: 87 RAQNMQVLATT------------FSETAVDFRE-IDYTRPTAIILGNERDGVSQEGIAAA 133 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + ++ + Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQRTAAGMYGTRKLDEA 179 >gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 17/161 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L + + N G + R + + R+ + SS A + +V + Sbjct: 115 IIVLDEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTN 174 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ D ++Y N V +I G E G+ Sbjct: 175 LNTTIEKLKKDGIWVYGADMSGENYCFDVDF--------------KGPAALIIGSEGRGI 220 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN S A ++++E ++ I Sbjct: 221 AKLTKEKCDVLVKIPMVGRVSSLNASVAGGILMYEILKQRI 261 >gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 285 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R + + LV S + ++ + + + + Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAK--AT 188 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +A + T + +++SV + V ++ G E+ GL Sbjct: 189 TEAFLAWRGAFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 235 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 A + ++ P SLN++ A +M++E ++ Sbjct: 236 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 276 >gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] Length = 240 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 83 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 143 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLCQSKMTG-RLA 189 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 >gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC 17982] Length = 325 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 16/172 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ ++ L N+G V R+ F + + R + A SA A Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226 Query: 67 VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV L+EA +F+ L + + + Sbjct: 227 RVPVARVTNLVRALEEAKQAGYFVVGLDGGGD-------------APLRGLSLADGPLVV 273 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E GL+ + I+S P+ SLN + A + ++E Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQD 325 >gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 154 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ P++ N G R L LV P S+ + + V V ++ Sbjct: 5 IVFHTPEIPGNTGNAIRLAAVTG-AHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTVHAS 63 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + L + A T +F V ++FG+E GL + Sbjct: 64 LTDLWNHLGERRVIAFTTHTDQSFAEVDYRD--------------GDVLLFGQESTGLPD 109 Query: 135 EEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P+ P SLN++ + + ++E Sbjct: 110 SVVDDDHVDLSVRIPMLPSRRSLNLANSASIAIYEAWRQQ 149 >gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus DSM 2379] Length = 251 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 11/162 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A G +++L Q N+G + R + + + R + A +SA A I Sbjct: 91 REDAAGFLLVLDGIQDPHNLGALIRTAACAGASGVVIPRDRACAITPAAEKASAGAVETI 150 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V +N+ +++ L R+ + EA L E FSG + ++ G E Sbjct: 151 TVAQV-TNIAQSLEKL---------KRSGYWVYGLSGEADASLYEVAFSG-KIALVIGGE 199 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+ +A++S P+ SLN S A + ++E Sbjct: 200 GEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEVAR 241 >gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114] gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114] Length = 159 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V+ N Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + L A + + + A + + ++FG E GL + Sbjct: 63 YAAFLEYL-------ANDSDVEHRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADL 115 Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + P+ P SLN+S +V ++V+E Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152 >gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. syringae B728a] gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 251 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P+ SLN+S A + ++E + + Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250 >gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01] Length = 250 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 21/165 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R Q +V P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T E L + +G V ++ G E G+ Sbjct: 159 LARTLEKLQKKGLWVVGTAG-------------EVEQELYQLDMTGPTV-LVMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN+S A + ++E + + Sbjct: 205 RRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKRQ 249 >gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1] gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1] Length = 279 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 16/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L + N+G + R + + LV + +A ++ + + R+ ++ Sbjct: 133 IALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLSTD 192 Query: 77 LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +A+A + T +++S+ + ++ G E+ GL Sbjct: 193 AFKALAAKWPGMVVGTHLEGSVDYRSLDY--------------SEPALLLMGNEQQGLPA 238 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + A + ++ P SLN++ A + ++E + Sbjct: 239 DMAACCSHLVRIPQVGQADSLNLAVATGIALYEIRRKHL 277 >gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253] gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ECD227] Length = 243 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides ATCC 15264] Length = 265 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 12/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 QL ++ I L + N+G + R + L+ S +A ++ + Sbjct: 112 QLDPASASCWIALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSV- 170 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 AI + A A SV+ + A V I+ G Sbjct: 171 ----------FAVAIVRCT-VEAFLAWRTAWPGSVVGTRLDATVSYREAAYAGPTLILMG 219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E+ GLT+ A + + P+ SLN++ A +M + + + Sbjct: 220 NEQAGLTDGLAAACDVNVKIPMRGRADSLNLAIATGIMAYAVTDAA 265 >gi|239948353|ref|ZP_04700106.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922629|gb|EER22653.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 58 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/35 (57%), Positives = 25/35 (71%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48 P+IILV PQ+GENI ARA+ NF L +L +V P Sbjct: 2 NPIIILVAPQMGENISATARAIKNFGLNELGIVAP 36 >gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10] Length = 265 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 16/174 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 PQL K P ++IL N G + R + + L + A +SA A Sbjct: 104 PQLFEEGKTPFLLILDRLTDVRNFGAICRTAECVGVHAIILPEKGAAPINSDAIKTSAGA 163 Query: 65 DCVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I ++R+ NL A+ L + V + E A L + Q Sbjct: 164 ---IYNLRICKEKNLAHAVDFLQ----------QSGLQVFSASEKAQKLIYDVDFTQPCA 210 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ E + S+ I P+ SLN+S A +++E + + + Sbjct: 211 IVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEAVRQKLSTP 264 >gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P +++L N+G R+ + + + R + A+ + A Sbjct: 87 PDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 147 AESVPLIRVTN------------LARTLRLLQEENIWIVGTAGEADHTLYQSKLTG-PLA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + +IS P+ SLN+S A + ++E M I Sbjct: 194 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQRI 244 >gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2] gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2] Length = 249 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + R + +S A I V+V + Sbjct: 99 ILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ T A + +++S+ + ++ G E G+ Sbjct: 159 LSRTLEEMKGRGIWVVGTDASGQQDYRSL--------------DGNMPLALVIGSEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 205 GRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter subterraneus DSM 13965] Length = 306 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P++++ Q N+G V R+ + R A SSA A + Sbjct: 131 REPPLLVICAGIQDPHNLGAVFRSAEAAGAHGAVVPVHRSAPLGPTAFKSSAGALVHLAV 190 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V A+L+ + R + V+A ++ + ++ G E Sbjct: 191 AQV--------ANLNQVV---RRFKEQGVWVVAADPEGAQPYDQWDWTRPTALVLGSEGR 239 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + + + P+ SLN+S A ++++E Sbjct: 240 GIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQR 281 >gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 275 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 6 PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + S +G +IL Q N+G + R + + + S K +S + Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + R F +L + L I T+ + +L P A S + Sbjct: 173 VFHVPTPR-FQDLAAVVKALRSEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V + G E GL E + + ++S P+ SLN++ A L +W Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267 >gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] Length = 271 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + A +I + N G V R F + L + K SS + Sbjct: 111 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 170 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 + V V L +A+ + SVLA L+ SG + + Sbjct: 171 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 219 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E WGL + AL++ I+ P+ SLN+S A ++++ Sbjct: 220 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 263 >gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog [Clostridium botulinum C str. Eklund] gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog [Clostridium botulinum C str. Eklund] Length = 160 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 36/168 (21%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 I+L +P++ +N G + R N ++L L+ P +K+ + V Sbjct: 9 IVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFRIDDKSLKRA--GLDYWPHLDVE 63 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + I N L+ + ++ + + I+FGRE GL Sbjct: 64 IHESFDDMIK-----------KYPNANIYLSTTKEPKYHHDEVNYKKGDFIVFGRESSGL 112 Query: 133 TNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171 + I I P+ SLN+S V ++ +E + Sbjct: 113 P-------DYIRDKYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQ 153 >gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae Sd197] gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 243 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLCQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580] gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis ATCC 14580] gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580] Length = 249 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + R + +S A I V+V + Sbjct: 99 ILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E ++ T A + +++S+ + ++ G E G+ Sbjct: 159 LSRTLEEMKGRGIWVVGTDASGQQDYRSL--------------DGNMPLALVIGSEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 205 GRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242 >gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator] Length = 1333 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%) Query: 1 MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 + ++ +G +++ LV N+G +AR F + L + N D + + Sbjct: 1168 IESAHREVSQLHEGLIVVASLV--SRPPNLGGIARTCEIFGVKSLVIAN-LDCVKDKDFQ 1224 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIF 116 S +A+ I+ ++V L E + ++ S++ ++ A I L E F Sbjct: 1225 CLSVSAEKWINMIQV--TLHE-LQQYLL------EKKSAGWSIVGAEQTANSINLLEAKF 1275 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ G E+ G+ I L N + P + SLN+ A + +W+ Sbjct: 1276 EKKTI-LVLGNEKDGIPANFIPLFNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329 >gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 16/173 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + P +++L N+G R + + + R + + + A Sbjct: 86 PDFLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDRSAQLNATTKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R +N V EA L + +G V Sbjct: 146 AENVPLIRVTN------------LARTLRLLQESNIWIVGTAGEATHSLYQSKLTG-PVA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E G+ + +IS P+ SLN+S A + ++E M Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIMRQRSAQ 245 >gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 360 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 201 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 260 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI L R R + L ++ E F + ++ G E Sbjct: 261 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 310 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ +AI P++ SLN S A + ++ +++ Sbjct: 311 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 356 >gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P] Length = 168 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 16/163 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR- 72 I+ + ENIGM R +F ++++ + PS + + A I Sbjct: 17 PITIVCDAIRTPENIGMCFRISESFGVSKIYF---HEASPSTENKIVKKTARNTIHQTEH 73 Query: 73 -VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERW 130 +SN KE I TT R + N + + +I + + + + ++ G ER Sbjct: 74 ETYSNFKELI--------TTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERN 125 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+ N I ++ I+ P+ S+N+ ++ + ++E + Sbjct: 126 GVEN--INSADETIAIPMYGKNSSMNVIHSLAITLYEATSQLL 166 >gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC 73102] Length = 363 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 23/182 (12%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + Q ++ +++ N+G + R L + R + Sbjct: 186 LADLIEQSKSVTDPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKV 245 Query: 61 SANADCVIDSVRV--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114 +A A +++ V NL A+ +L +IY T A +V Sbjct: 246 AAGA---LENFTVSRVVNLSRALEELKEAGFWIYGTAASGSEPVHTVNF----------- 291 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E GL + ++S P+ PSLN S A + ++E + Sbjct: 292 ---KGPIVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTPSLNASVAAGMALYEIYRQRSL 348 Query: 175 SS 176 ++ Sbjct: 349 NT 350 >gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 267 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ F + L + K S+ + + V FS+ + A Sbjct: 127 QDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVP-VLPFSDTEAAYT 185 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +I A T L + A + + + G E GL++ Sbjct: 186 FLKQENFWIAAAT----------LDGRPLAEIARRHDLP--KIALAIGNEGNGLSSYARK 233 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++A + P++ SLN + A ++ +E E Sbjct: 234 EADATVYIPISGKAESLNAACAAGILCYEFREAQ 267 >gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39] Length = 219 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 10/157 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 V++L + + NIG + R F +TQL L P + ++ A +D + Sbjct: 67 PLVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDW-KH 125 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132 + + EA+ R + + +LN + Q +IFG E G+ Sbjct: 126 YESTLEAVK--------ALREEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGV 177 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++E + + + I P S NI + +++W+ Sbjct: 178 SDEVMEVIDECIEIPQFGTKHSFNIVISAGIVLWDFF 214 >gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435] gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 249 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 VVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E +++ A N +++ + + + I+ G E G+ Sbjct: 157 LAKTIDELKEHGYWVAGAEADNATDYRDM--------------AADMPLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I P+ SLN S A LM++E Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240 >gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25] Length = 236 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 39 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 92 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G +++ L++ Sbjct: 93 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLADQ 143 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 144 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187 >gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 242 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I RV + L + + + + T ++ G + + Sbjct: 148 HIPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 23/166 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L ++ ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWVIGLAGEANDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTQQ 247 >gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 269 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + LV+PR G P ++ S + R+ + + +A L Sbjct: 132 NVGAIFRSAAALGV-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARL-ESWPDHLAQL- 188 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + + + + + A+ L++ + ++ G E G++ E +A + + Sbjct: 189 -------KEQGFTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAV 241 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + WE Sbjct: 242 KIPMRAGVDSLNVAAASAVAFWELR 266 >gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621] gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603] gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048] Length = 222 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 74 ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 133 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 134 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 179 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 180 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 215 >gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82 N+G +AR + ++ P+ G + A +SA A I R NL + Sbjct: 121 NLGAIARTAECSGVH--AIIVPKKGSAEINPDAIKTSAGALYKIPVCR-HDNLGKVGKFL 177 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + +T E + II G E G++++ I + Sbjct: 178 IDSGIQLVVST---------------EKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRI 222 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S+ + P+ SLN+S + ++++E + ++ Sbjct: 223 SDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259 >gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 230 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 15/157 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 V+IL Q +N G + R+ F + + R + +S+ +V+V Sbjct: 83 VLILDHIQDPQNFGAIIRSANVFGFKHIIIPKDRACDVTPSVLKTSSGG---FKNVKVIK 139 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++L +AI +L +N+ + A + A LN+ F + + II G E G++ Sbjct: 140 VNSLFDAIEEL--------KNKGFWIYASALNQQAKKLNDAKF-NEKIAIIVGNEGSGVS 190 Query: 134 NEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECM 169 + S+ II + SLN+S A ++++ Sbjct: 191 KTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVF 227 >gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve DSM 20213] Length = 332 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 18/165 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +AI L ++ + E F + ++ G E GL Sbjct: 238 LTKAIEGLKERGYYVVGLDGGGDKL-------------VGETGFETDPLVVVLGSEGSGL 284 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +AI P++ SLN S A + ++ +E Sbjct: 285 SRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSRARREGAE 329 >gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 291 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 16/176 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP A +L S + ++ L + N+G V R T + L+ S + + Sbjct: 129 LTPLA-KLDVSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRA 187 Query: 61 SANADCVIDSVRVFS-NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + + + E + T P+ A Sbjct: 188 TMGSIFAVPLAKASEAEFLEWRKGFSGLVAGTHM---EGAVDYREPRYGA---------- 234 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 Q ++ G E+ GLT + + ++ P + SLN++ A +M++E ++ Sbjct: 235 QPTILLMGNEQAGLTPSLARICDVLVRIPQSGRADSLNLAVATGVMLFEARRGALT 290 >gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9312] Length = 160 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 26/166 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 + L +P++ +N G +AR+ FN+ L L+ P +K + V V + Sbjct: 3 VTLFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRA--GLDYWPLVTVNKY 59 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +N K+ +A ++ + + K+ I L + F +V ++FGRE GL + Sbjct: 60 ANFKKFLA-----------SKQTKRIISFSKKNGIYLKDFKFQEDDV-LLFGREDSGLPD 107 Query: 135 EEIALSNAIISFPV------NPLF---PSLNISQAVLLMVWECMEN 171 I S+ +IS + N SLN+S A + ++E + Sbjct: 108 LIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQ 153 >gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 178 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 13/172 (7%) Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P A + AK PV ++L + + +N+G R F + + L P+ ++ Sbjct: 12 PTAGEFAAMAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTA 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQ 119 A+ + + + I LH + ++ + + V+ + R G Sbjct: 72 LGAELTVPWS-YYETTEACIDRLH---------ADGYEVLAVEQVEGAVMLDVFRAAPGV 121 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E G+ + + I P S+N++ + +++W Sbjct: 122 KYALVFGNEVMGVGQSAVDRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFRR 173 >gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus YK9] Length = 264 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 12/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L + N+G + R+ + L + K S+ + + + + Sbjct: 119 VVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLP--VIEA 176 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L E + + + + A + V ++ G E GL+ E Sbjct: 177 DLLELL----------PKAQERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPE 226 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L++ + P+ SLN++ A ++++E + Sbjct: 227 VLELADQSVIIPIRGRAESLNVAMAATVILYEALRQR 263 >gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM 17241] Length = 256 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 22/155 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV---FSNL 77 + N+G + R L + P+ G A +SA A + RV S + Sbjct: 116 EDPHNLGAIIRTAEAAGAHGLII--PKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTI 173 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 KE A +IY A ++ L ++ G E +GL+ Sbjct: 174 KELKARGVWIYGADASGARWDQTDLT---------------GPSALVIGSEGFGLSRLVR 218 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +A++S P+ SLN S A ++++E + Sbjct: 219 ETCDALLSLPMRGEVNSLNASVAAGILMYEAVRQR 253 >gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18] gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha275] gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis OX99.30304] gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M6190] gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M13399] gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M0579] gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis ES14902] gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis 961-5945] gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis G2136] gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M04-240196] gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis NZ-05/33] Length = 250 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + ++ A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491] gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491] Length = 250 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + ++ A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus weihenstephanensis KBAB4] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 99 ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240 >gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974M2] Length = 251 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 18/177 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 I G E G+++ + +I+ P+N SLN S A ++++E N ++ ++ Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKFSHL 249 >gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P +++L N+G R+ + + + R + A+ + A Sbjct: 87 PDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 147 AESVPLIRVTN------------LARTLRLLQEENIWIVGTAGEADHTLYQSKLTG-PLA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + +IS P+ SLN+S A + ++E M I Sbjct: 194 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQRI 244 >gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702] Length = 262 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + Q NIG + R+ F++ + L + K S+ + + + Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAI L T + +SV +E Q ++ G E G+++ Sbjct: 176 TEEAITLLQKGGFTVYSAELSDRSVRLGEEKLP---------QKTAVVIGNEGNGVSDTV 226 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + P++ SLN S A ++ WE + Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259 >gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2] gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2] Length = 238 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 69/160 (43%), Gaps = 15/160 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N+ K +++L + Q N G + R +F + + +E +S ++ Sbjct: 85 NTDKKIILVLDEIQDPGNFGAICRTSKSFQVAGIIFKKNNQIQINETVIKTSLGTVNYLN 144 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRE 128 ++V +NL E + L + N+ +V E +I L++ + +I G E Sbjct: 145 FLKV-NNLSEVLNKL---------KKENYWTVCTALDEKSIPLSKFKTDINKLVVIVGNE 194 Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVW 166 G++ E+ S+ I+ ++ SLN+S + ++++ Sbjct: 195 NKGVS--ELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILY 232 >gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501] gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501] Length = 217 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + L+ R G +K + A +D + + + + Sbjct: 43 HNASAVIRSCDIFGIQDAHLIEERFGNRLDKNIAM--GAQRWVD-IHRYKSTDACVH--- 96 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A ++ V V E + V + FG E+ GL+ I ++A I Sbjct: 97 ------ALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGLIRQADAAIQ 150 Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168 P+ SLN+S A +++ E Sbjct: 151 IPMVGFTESLNVSVAAAIVLREL 173 >gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917] Length = 277 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 22/184 (11%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L +L Q N+G + R ++ +L L+ S K SS+ Sbjct: 101 EALPEPPGHTSFVLALDRVQDPGNLGTLLRTALAADV-ELVLLASGADPLSPKVVRSSSG 159 Query: 64 ADCVIDSVRV-------FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN 112 A + R+ L E + DL + AT AP E Sbjct: 160 AVLTLAQERLGPEERQGVRALAERLQDLRCDGLQVVAT------LVPDASAPVEVLPYW- 212 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ G E GL E +A + ++ P +P SLN++ A + ++ E + Sbjct: 213 -ELDWTRPTALVLGNEGSGLHPELLACCSHGVTLPHSPRVESLNVAAAAVPLLLERRRAT 271 Query: 173 IVSS 176 + + Sbjct: 272 MTAP 275 >gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559] Length = 264 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 20/155 (12%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R N+ + + NP+ + SS VF+N Sbjct: 123 PEKPGNIGALLRTADAANVDAVIIANPKTDLYNPNIIRSSVG--------CVFTN----- 169 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGLTNEEI 137 TT + K A + + Q+ I+ G E GL++E Sbjct: 170 ---QVAVGTTTEIISFLKKQKVNIYCAALQASEHYHLQDFTTATAIVVGTEATGLSDEWR 226 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I P+ S+N+S A ++++E Sbjct: 227 KNATQNIIIPMQGEIDSMNVSVAAGILIYEAKRQR 261 >gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909] gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 2603V/R] gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909] gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae 18RS21] gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae CJB111] gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus agalactiae H36B] Length = 251 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + +N ++IL N+G + R N+T + + R + + Sbjct: 91 LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S A + RV + L + D F I+ T ++ Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKEFWIFGT--------------DMNGTPSHKWNT 195 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G + ++ G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251 >gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium carboxidivorans P7] Length = 276 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N G + R + + + R+ + +S A + ++ + Sbjct: 128 IVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIEHMKIAKI-T 186 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI L A + F G V +I G E G+ Sbjct: 187 NINNAIDKL---------KEQGIWVYGADMNGENYCYDVDFRGA-VALIIGSEGKGILKL 236 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A ++++E ++ Sbjct: 237 TKNKCDVLVKIPMVGNISSLNASVAGGILMYEILKQR 273 >gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R] gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R] Length = 271 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76 V+ + N G + R + KA SSA + I R + Sbjct: 124 VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 183 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + I AT+A + + A L + +FG E GL Sbjct: 184 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 231 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A ++ + P+ SLN++ A + ++E + Sbjct: 232 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 271 >gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 175 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 28/163 (17%) Query: 17 IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SV 71 +LV N G + R + + N + S + + ++ +++ ++ Sbjct: 22 FVLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPYSPDA 81 Query: 72 RVFSNL---KEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + L KE D H I TT+ K + + E A + + ++ Sbjct: 82 DVITTLNGLKE--KDYHLIGLELTTTS------KPLASLNEYAF---------KKIALVL 124 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G ER+G+ + + + + I P+ S+N+SQA + ++ Sbjct: 125 GHERYGICEDVLNILDHITYIPMRGKNSSMNVSQAAAIAAYQL 167 >gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali symbiont] Length = 244 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 16/172 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ ++ A Sbjct: 86 PDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAPLNATAKKVASGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G V Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEYNVWIVGTAGEADHNLYQSKMTGAMV- 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244 >gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 255 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADCVID 69 K +IL N+G + R+ F + + + P D S + + + Sbjct: 100 KEDAVILDRVGNANNLGAIVRSAAFFGIKNIVI--PLDESQSSITTSSYRVAEGGMEFV- 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ ++ + D+ AR + K+ E ++ E+ ++ G E Sbjct: 157 NIYSVRSIPFLLKDMK---GKMARFGTSLKAQKKVSEMKLLCQEK-----PALVVLGNEE 208 Query: 130 WGLTNEEIALSNAIISFP------VNPLFPSLNISQAVLLMVWECME 170 G++ E ++++ P P SLN++QA ++++E + Sbjct: 209 KGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAASVIMYELKK 255 >gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 266 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 28/177 (15%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P AP P+++L +P+ N G V R F + + Sbjct: 114 PPAPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFG----------------ASGVVTT 157 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V A A LHF T R + A A G V Sbjct: 158 GDLDLWHPAVV-----RAGAGLHFA---TPVARRAVPELPAGPLWAFDAEGEDLRGVRVP 209 Query: 123 ----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + FG ER GLT ++ +++ P+ P S N++ +V + ++ + Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHWSLGAGRP 266 >gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640] gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06] Length = 250 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642] gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 253 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 21/165 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN+S A + ++E + V + Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249 >gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MED121] Length = 270 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 23/171 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------ 66 +IIL N+G R+ L + + + + A Sbjct: 117 PPLIIILDGITDPHNLGACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYA 176 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V + R L++ +I+ T A I+ G Sbjct: 177 VTNLARTMKKLQDK---GVWIFGTAG--------------EASQTIYEQDLTIPSAIVMG 219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G+ + ++ P+ + SLN+S A + ++E + IV Sbjct: 220 AEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGICLYEAVRQRIVKKA 270 >gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 21/173 (12%) Query: 6 PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 P L + P IL N+G R+ + +V PRD + A+ + Sbjct: 86 PALLENLDKPPFLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVA 143 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + A T R N V EA L + +G Sbjct: 144 CGAAETVPLIRVTN------------LARTMRFLQEQNIWIVGTAGEADHNLYQSKMTG- 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 PMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320] gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320] gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906] gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis] gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis] Length = 167 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71 I+L +P++ N G + R N L L+ P G+ + R A D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ L A + F L K N G ++FG E G Sbjct: 62 DYYAFLES--EGLSPDNAQSPTGARLF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I P+ S+N+S V ++V+E Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157 >gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis Uo5] Length = 260 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 18/176 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 I G E G+++ + +I+ P+N SLN S A ++++E N ++ N Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKVSN 248 >gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 287 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 17/177 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + + N G V R + L + + KA +S + Sbjct: 116 EEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKAVRASVGSL 175 Query: 66 CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +++ A+ + + A A +R+ + ++ G Sbjct: 176 FHLPVAVGV-SVERAVEGLRAEGVRVLAADGAGDRDLDAEL-----------DKGTMGGP 223 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 224 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPAG 280 >gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. Ch1-1] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T KS+ + Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247 >gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab] gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab] Length = 270 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 22/177 (12%) Query: 4 YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +P + G V V+ Q N+G + R + L L + K +SA Sbjct: 106 ASPPPEALRLGLV---VETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASA 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +V S+L I + A T LAP ++ Sbjct: 163 G-QWFRRPPQVLSDLPAWIQSCRRQGIQVLAAT----------LAPLATCYWDHDLT--- 208 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + G E GL I L++A + P+ SLN++ L+++E + Sbjct: 209 RPTLFLLGNEGAGLQESTIQLADAQVRIPMAAGVESLNVAMTGGLLLYEALRQQRAQ 265 >gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 275 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 6 PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + S +G +IL Q N+G + R + + + S K +S + Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + R F +L + L I T+ + +L P A S + Sbjct: 173 VFHVPTPR-FQDLAAVVKALRAEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V + G E GL E + + ++S P+ SLN++ A L +W Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267 >gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 15/164 (9%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L+N +++L N+G + R+ F + +VN +EKA S+ Sbjct: 102 PSPSPLKNIRS--LLVLNQINDPGNLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSAR 159 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + +L+E L TT + + I + V Sbjct: 160 GATFRLPYRK--GDLQELEEILTHNKLTTWVADVSGTPMQD-----------ITPPEKVA 206 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E G+++ L + ++ P++ SLN++ A +++ Sbjct: 207 LVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNVAVAGAILLH 250 >gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris 28-1] gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 354 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++ L N+G V R+ F + + R + A SA A ++ Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +NL A+ DL A + L + + + ++ G E Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ + I+S P+ P SLN + A + +++ Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350 >gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3] gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28] gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29] gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18] Length = 212 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A I RV + Sbjct: 64 ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ + +++ + +G++ G E G++ Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 169 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205 >gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68] gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F] gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68] gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G V RA + V+ + K S+A + + + + E Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199 Query: 82 ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 D + +Y T R P+ VL ++ ++FG E GL + Sbjct: 200 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+S P+ SLN+ + +M+ Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna ACS-171-V-Col3] gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna BVS033A4] gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328] gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna ACS-171-V-Col3] gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna BVS033A4] Length = 155 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L++P+ N G + R N T+L LV P +K S D V Sbjct: 4 IVLLEPEKPSNTGNIGRTCVLTN---TRLHLVRPFSFRLDDKLLKRS--GMDYWDKVDLV 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ E + + V + A + ++FG+E G+ Sbjct: 59 IHDDIDEFLEYI-----------KGNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGI 107 Query: 133 TNEEIALSNAI-ISFPVNPLF-PSLNISQAVLLMVWECMEN 171 + ++ I P+N SLN++ + ++++E + Sbjct: 108 DKDLVSKHKEHSIKIPMNMEIDRSLNLANSCNIVLFEALRQ 148 >gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 242 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 11/150 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R+ F+++ + L + + A I+ V+V NL +++ Sbjct: 104 NLGAIIRSAAAFDISTIILPENNSIEENGTIAKIAVGALEKINLVKV-KNL---YNTINY 159 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + ++ F + + L E+ F + G E GL N + +I Sbjct: 160 L------KKHEFWIIGLDLNDSNQLTEQTFH-SKTAFVLGSENKGLRNLTRQQCDFLIKI 212 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P++ SLN++ A ++ +E + SI Sbjct: 213 PMSHKTESLNVAGAATIIFYESFKFSIKQQ 242 >gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis ATCC 14018] Length = 331 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI L R R + L ++ E F + ++ G E Sbjct: 232 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ +AI P++ SLN S A + ++ +++ Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327 >gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis 409-05] Length = 331 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI L R R + L ++ E F + ++ G E Sbjct: 232 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ +AI P++ SLN S A + ++ +++ Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327 >gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 354 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++ L N+G V R+ F + + R + A SA A ++ Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +NL A+ DL A + L + + + ++ G E Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ + I+S P+ P SLN + A + +++ Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350 >gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis L2-32] Length = 290 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-----RVFSNLKE 79 N G V R+ + LV+ + K S+A + + V F E Sbjct: 140 PGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMGTDEYFDWCAE 199 Query: 80 ---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ +Y T AR VLA ++ ++FG E GLT + Sbjct: 200 RGLAVYAAD-VYGTDARPPEPLTDVLAVPQSLAQAK---------TVLFGNEARGLTQDV 249 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + I+S P+ SLN+ + +M+ +S V Sbjct: 250 LERVDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289 >gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum acetoxidans DSM 771] Length = 246 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L + N+G + R + + + R + SSA A + RV + Sbjct: 98 IIMLDEITDPHNLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARV-T 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL ++I L N V + + I+ G E GL Sbjct: 157 NLVQSIKILQ----------ENGIWVAGADMEGDKVYWEAPLSGPIAIVIGGEGKGLGRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A L+ +E + Sbjct: 207 VKEKCDFLVRLPMQGKISSLNASVATALLAYEVVRQR 243 >gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202] gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA2] gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL025PA1] gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA2] gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL036PA2] gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA2] gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL086PA1] gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL050PA1] gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL001PA1] gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL027PA1] gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL002PA2] gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL082PA1] gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL045PA1] gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA1] gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA2] gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL005PA3] gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL053PA2] gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL046PA1] gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL103PA1] gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL096PA2] gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL043PA2] gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL092PA1] gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA3] gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL083PA2] gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL087PA1] gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes HL099PA1] gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266] Length = 273 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + A +I + N G V R F + L + K SS + Sbjct: 113 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 172 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 + V V L +A+ + SVLA L+ SG + + Sbjct: 173 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 221 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E WGL + AL++ I+ P+ SLN+S A ++++ Sbjct: 222 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265 >gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 269 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 12/145 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + LV+PR G P ++ S + R L+ DL Sbjct: 132 NVGAIFRSAAALGV-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWAR----LESWPGDLA 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + R + + + + A+ ++E + ++ G E G++ E ++ + + Sbjct: 187 VL-----REQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDLAV 241 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + WE Sbjct: 242 RIPMRAGVDSLNVAAASAVAFWELR 266 >gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris FB024-16] Length = 354 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + ++ L N+G V R+ F + + R + A SA A ++ Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +NL A+ DL A + L + + + ++ G E Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ + I+S P+ P SLN + A + +++ Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350 >gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 243 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIAGLENPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLYQSKMTG-RMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A] gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A] Length = 260 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 25/164 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75 IL Q N+G + R N+ + L + + K +SA A + S Sbjct: 114 ILERLQDPGNLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWF---KAPLVITS 170 Query: 76 NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NLK+ + ++ + AT + N+ + + I+ G E Sbjct: 171 NLKDIVMNYKNQGVN-VVATLPNAKKNYWDLDLTR--------------PTIILLGNEGS 215 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 GL+ + + +++ + P+ SLN++ L+++E + Sbjct: 216 GLSEQLVNMADETVKIPLEQNIESLNVAVTGALILYEAKRQRTL 259 >gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus carboxydivorans Nor1] Length = 248 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q Q + P ++L+ + + N+G + R + + L R S +SA A Sbjct: 88 QAQTKGEAPFLVLLDELEDPHNVGAILRTADATGVHGVLLPKRRSCPLSATVAKTSAGAI 147 Query: 66 CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + R+ L++ ++ A + Sbjct: 148 EYVPVARIGNIVQTLEKLKKAGLWVVG--------------ADMAGDKAYYETDLTGPLV 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SLN S A L+++E + Sbjct: 194 VVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVLRQR 243 >gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 282 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76 V+ + N G + R + KA SSA + I R + Sbjct: 135 VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 194 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + I AT+A + + A L + +FG E GL Sbjct: 195 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 242 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A ++ + P+ SLN++ A + ++E + Sbjct: 243 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 282 >gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 299 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 11/157 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G + R + KA SSA + + V +++ E Sbjct: 148 VETAEPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLP-VSRHTSIPE 206 Query: 80 AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + LH + AT+ V + + E GQ V +FG E GL + Sbjct: 207 VVERLHEQGYVVLATSG-----DGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGLGDW 261 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L++ +S P+ L S N+ A + ++E + Sbjct: 262 Q-DLADVRVSIPMQGLAESFNLVTAAAVCLYETARVA 297 >gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa SC2] gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa SC2] Length = 248 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 20/165 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R + + R + +SA A + RV + Sbjct: 99 ILLDEIEDPHNLGSILRTADCTGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNL 158 Query: 76 --NLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++ T TA + V V I+ G E G Sbjct: 159 GQTIDRLKEEGVWVVGTDVTATDPVFGNGVFT---------------GPVAIVIGNENKG 203 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E + S Sbjct: 204 MGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLRGRQARS 248 >gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris] Length = 166 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71 I+L +P++ N G + R N L L+ P G+ + R A D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ L+ A + F L K N G ++FG E G Sbjct: 62 DYYAFLES--EGLNPDNAQSPTGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I P+ S+N+S V ++V+E Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157 >gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78] gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78] Length = 297 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + N G V R + L + + K +S + + V + Sbjct: 145 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVP-V 203 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +EA+A L + A + +R G +FG E WGL E Sbjct: 204 EEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETR 257 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 AL++A++ P++ SLN++ A + ++ Sbjct: 258 ALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 292 >gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 289 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 12/154 (7%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVI 68 + G +++L N+G V R+ F + + ++ R P S+ A + Sbjct: 122 DPTHGALLVLDQITDPHNVGAVLRSAAAFGI-RAVIMQDRKAPPLFGTVCKSAVGAAERV 180 Query: 69 DSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 VRV L E + + A+ + G + ++ Sbjct: 181 AHVRVTNIADTLLEFSKAGRHVLGLAGEAELDL-------ATALAAPDGKGWGPGLVLVM 233 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E GL + ++ P+ SLN+S Sbjct: 234 GSEDKGLRQRVAECCDQLVRIPMTDTVESLNVSN 267 >gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400] gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans LB400] Length = 247 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T KS+ + Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247 >gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia coli AA86] gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605] Length = 243 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G V RA + V+ + K S+A + + + + E Sbjct: 142 PGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199 Query: 82 ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 D + +Y T R P+ VL ++ ++FG E GL + Sbjct: 200 GDHNLDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+S P+ SLN+ + +M+ Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 174 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 23/168 (13%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------ 64 K P+I+L+ + N+G + R F + ++ S + + ++ N Sbjct: 15 RKFPIILLLDNITSEANLGSMFRLADAFGVEKIVFCGSEPNLQSNRLKRTARNTFKTVQF 74 Query: 65 DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + DSV+ NLK E ++ +++ +F + + + + Sbjct: 75 EFFEDSVKTIKNLKTEGYKNIAIEITSSSNPIGSF---------------SLNEDEKLVL 119 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I G ER G++ E + L + + + S+N++Q+V + ++E + Sbjct: 120 IAGNERHGISAEVLNLCDELYHIEMFGENSSMNVAQSVGIALYEITKA 167 >gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC H10407] Length = 243 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591] gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591] Length = 397 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LVN S A ++ A+ V L +A+A Sbjct: 260 PHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEGGAEHV--KAISAEGLVDALAQ 316 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R +++ ++ I+ G+E GL++ + Sbjct: 317 F----------RAAGYTIVTTSSHKGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVK 366 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLNIS A +++ E Sbjct: 367 VSIDGTGNVESLNISVATGILLAEWWRQ 394 >gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353] Length = 257 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 13/171 (7%) Query: 3 PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P +L + K P L++ Q N+G + R +T + + + K S+ Sbjct: 96 PSIEELLHKEKNPCFFLLENLQDPGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRST 155 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + V + +L E I L + N SV A V ++ + + Sbjct: 156 MGAIFRVPFV-IADSLPEVIFQL----------KQNGVSVYAGHLKGDVFYKQDYRDGS- 203 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT+E AL++ I P+ SLN + + ++++E M Sbjct: 204 AFLIGNEGNGLTDEITALADYKIKIPMKGKVESLNAAVSATILMYETMRQR 254 >gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705] gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705] Length = 294 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G V RA + V+ + K S+A + + + + E Sbjct: 144 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 201 Query: 82 ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 D + +Y T R P+ VL ++ ++FG E GL + Sbjct: 202 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+S P+ SLN+ + +M+ Sbjct: 253 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 282 >gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 197 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254 >gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima CS-328] Length = 304 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 18/173 (10%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +T Q +++ PV++ V N+G + R L L R + Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAVGINATVMK 193 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +A A RV + +L E + +IY T A F+ + ++ Sbjct: 194 VAAGALETFPVARVINLNRSLTELKSAGFWIYGTVA---GEFQPLYNANLTGAIV----- 245 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ G E GL++ + ++S P+ PSLN+S A + ++E Sbjct: 246 ------LVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYEIF 292 >gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus peroris ATCC 700780] Length = 242 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRSVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + +I+ T ++ SG + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWIFGT--------------DMNGTPCHKWNTSG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P++ SLN S A ++++E N + Sbjct: 193 IIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNRL 242 >gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein [Propionibacterium acnes HL063PA1] Length = 273 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + A +I + N G V R F + L + K SS + Sbjct: 113 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 172 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 + V V L +A+ + SVLA L+ SG + + Sbjct: 173 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 221 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E WGL + AL++ I+ P+ SLN+S A ++++ Sbjct: 222 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265 >gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 177 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 15/167 (8%) Query: 7 QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K P+I+++D N IG V R F + ++ L P++ ++ A Sbjct: 16 EFKAVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTALGAT 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVG 122 +D V L + + + VL+ ++A F+ + Sbjct: 76 ESVDWEYVEDTL-------TLV----KKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYA 124 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E G+ E I S+ I P SLNIS +++W+ Sbjct: 125 IVMGNEVKGVQQEVINASDFCIEIPQLGTKHSLNISVTTGVVIWDLF 171 >gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 235 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 13/161 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R + ++ V + R ++ + + N+ +A+A+L Sbjct: 30 PHNVSAVVRTCDAVGIHRVHTVWEKKYQFR---RGTAMGSQQWVRQTN-HDNINDAMAEL 85 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + V + A+ + I + I+FG+E++G ++E A+++ I Sbjct: 86 --------KGQGMQVLVTHLSDTAVDFRD-IDYTKPTAILFGQEKYGASDEAKAIADQDI 136 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 P+ + SLN+S A L+++E ++ N ++ Sbjct: 137 VIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNTQQLPE 177 >gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N] gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N] Length = 246 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ + GP IL N+G R + ++ PRD + + + Sbjct: 87 EVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNSTVQRVAC 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + ++E ++ T + A I + Q Sbjct: 145 GAADTVPYITVTNLARTMRELKERGVWLVGT--------------DDQASHDMHAIDARQ 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 191 PMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter tundripaludum SV96] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 31/169 (18%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + Q N G R + + + + ++ A Sbjct: 101 VLDNVQDPHNFGACLRTADATGVHGVIITKDNATGITPTVCKVASGA------AETVP-- 152 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----------IIFGR 127 +Y T +R KE I + ++ G Sbjct: 153 ---------VYQVTNLSRTLRWL----KEQGIWVMGAAGEATQTAYQTDFTVPLALVVGA 199 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E GL + ++ P+ SLN+S A ++++E + +++S Sbjct: 200 EGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQRLLAS 248 >gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum PRL2010] gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB 41171] Length = 332 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 10/162 (6%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +P + +A+ I L +N+G V R+ F + L R + A SA A Sbjct: 166 SPSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGA 225 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I RV NL +AI + R R + L ++ E F + ++ Sbjct: 226 AAHIPVARVV-NLTKAIE--------SMRERGYYTVGLD-GGGDKLVGETGFETDPLIVV 275 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL+ +AI P+ + SLN S A + ++ Sbjct: 276 LGSEGKGLSRLVRESCDAIAGIPITSMVESLNASVAAGISLY 317 >gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25] Length = 227 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G +++ L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178 >gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus pyogenes MGAS315] gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 96 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVCVTPVVSKTSTGAVEHI 155 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + A +I+ T P + + + ++ Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551] gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 259 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 17/166 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K ++ A Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166 Query: 68 IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V + A LH + AT++ R+ V G+ VG +FG Sbjct: 167 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + +++ IS P SLN++ A + ++E + Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256 >gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 20/150 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G V RA + V+ + K S+A + + + + E Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199 Query: 82 ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 D + +Y T P+ VL ++ ++FG E GL + Sbjct: 200 GDHNMGVWAADVYGT---------EECKPESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+S P+ SLN+ + +M+ Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF] gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 273 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 22/157 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLK 78 N+G R + L+ PR P +A S A + R+ +K Sbjct: 131 ANLGAAFRNAAALGV-DAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIK 189 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A A +R+ L +E + ++FG E GLT + Sbjct: 190 QA--GFTLA-AFCLSDRSLTLDALVAREDP-----------RLALLFGSEGPGLTPAALT 235 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + P+ SLN++ A ++ + +N Sbjct: 236 AADLHVRIPMQAGIDSLNVAAATAVVFYATRKNGPSG 272 >gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis NCTC 12261] Length = 242 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKGEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735] gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302] gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735] Length = 179 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 14/172 (8%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P V++L D + N+G V R+ F + + L P+ + ++ + Sbjct: 16 EFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNV 121 + + F +EA+ LH F + E + +L E + + + Sbjct: 76 DSVAW-KYFERTEEAVEALHH--------DGYFVYSIEQVEGSTMLQELTIDKPLTSKGY 126 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G+ + I +S+ + P SLN+S +++WE + + Sbjct: 127 AVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVRKML 178 >gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia hollisae CIP 101886] Length = 245 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 15/167 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L +++L N+G R + +V P+D + AR + A Sbjct: 90 LDGKENPLLLVLDGVTDPHNLGACLRNADAAGVCA-VIV-PKDKSAQLNATARKVAVGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ VRV + A V EA + + +G + I+ Sbjct: 148 EVVPLVRVT----------NLARTMRALQERGIWFVGTAGEATHDVYDAKLTG-PLAIVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 197 GAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 267 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 12/172 (6%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ N V + V N G + R + S K +SA Sbjct: 108 SAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAG 167 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + R N+K+ + L R + ++A V Q Sbjct: 168 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVDLAEADLSQPTAW 216 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +FG E GL E + ++ + P+ SLN++ A + ++E + S Sbjct: 217 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQEQS 267 >gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 154 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 31/171 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P++ N G R + L LV P SE + + SV V ++ Sbjct: 4 VLFYSPRIAPNTGNAIRMVAGTGCA-LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRERW 130 L A SVL P S VG ++FG E Sbjct: 63 LGAA------------------WSVLMPARVFAFTAHAATSFAGVGYEPGDVLMFGPEPT 104 Query: 131 GLTNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL +E L++ I+ P+ SLN+S A + V+E + Sbjct: 105 GL--DEATLADPHITGQVRIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGA 153 >gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens DSM 19672] gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens DSM 19672] Length = 156 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 + L +P++ +N G +AR ++ +L L+ S+K + + V + Sbjct: 5 VALFEPEIPQNTGNIARLCAGTDV-ELILIGKLGFSLSDKYLKRA--GLDYWEYVTLHKV 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L++ + N ++ K E S + I FG E GL Sbjct: 62 DTLEQFFSQF---------PDNIYEYAFLSKFGEKYYTEIPLSDNIITI-FGNESSGLP- 110 Query: 135 EEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E+ + + P+N S N+S +V +++++ + Sbjct: 111 -EMIRDRFMDRLYRIPMNDKIRSQNLSNSVAIVLYDILRR 149 >gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 252 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 23/154 (14%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRV 73 V N G V R + L + K +SA + I D+ V Sbjct: 104 VGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADV 163 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + LK+A VLA V + + +FG E GL Sbjct: 164 VTQLKDA-----------------GLQVLATVLGGSVSLDEVDLSGPTAWLFGPEAHGLP 206 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E AL+ A + P+ SLN++ A + +++ Sbjct: 207 AEVAALATAGVEIPMTGGAESLNVASAAAICLYQ 240 >gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703] gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703] Length = 290 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-----RVFSNLKE 79 N G V R+ + LV+ + K S+A + + V F E Sbjct: 140 PGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMGTDEYFDWCAE 199 Query: 80 ---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ +Y T AR VLA ++ ++FG E GLT + Sbjct: 200 RGLAVYAAD-VYGTDARPPEPLTDVLAVPQSLAQAK---------TVLFGNEARGLTQDV 249 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + I+S P+ SLN+ + +M+ +S V Sbjct: 250 LERVDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289 >gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3] Length = 363 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 16/167 (9%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++S G ++ L N+G V R+ F + + R + A +SA A + Sbjct: 207 RSSPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARL 266 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R + L A F+ A ++ + ++E + + ++ Sbjct: 267 PVARATNLARTLVSYAAGGQFVVGLAA-------------DSEVSIDELTMATDPLVLVI 313 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + + P+ SLN A + + E Sbjct: 314 GSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAGITLAEIARRR 360 >gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P + L + G V++L Q N+G R++ + D + + K + Sbjct: 107 PLSRTLDDLGPGLVLVLDGLQDPGNLGTAIRSLEAMGGGGAVVAGGVDPY-NPKVVRGAM 165 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + V+ + +A+A L R + + + + + + Sbjct: 166 GSLFRLPVVKRP--IGDALAGL----------RAAGRRIYLAEAGGALAPWAVDLARGAA 213 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++ G E G + E AL++ ++S P+ SLN A L+ +E M ++ + Sbjct: 214 VVVGSEAAGPSPEARALADGVVSIPMAGPTESLNAGVAASLLAYEAMRQQGAAAPPALSH 273 >gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +E+ Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQRVLKNEE 249 >gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 255 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 197 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254 >gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402] Length = 238 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 21/148 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R F++ Q+ L N ++K S A+ + ++ NL + I+ Sbjct: 105 QDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHL--SCIYGNLTQLIS 162 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L + + N N +I + + G E G+ E +A Sbjct: 163 QLQEKGVVVIGSALENGKN--------------IAQINRYSKMAFVVGNEGNGMNPEVLA 208 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+N SLN++ A +M++ Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGGIMMY 235 >gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL1A] Length = 442 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 +N+G + R+ L L R + +A A + RV + +L++ Sbjct: 281 PQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLK 340 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + +E + L+E F G V ++ G E G++ L + Sbjct: 341 DEGYTVVGLA-------------EEGSSTLSEIKFQGPLV-VVVGSEDKGISLITRRLCD 386 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ++ P+ + SLN S A + ++E + + S Sbjct: 387 QLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRSISGQDPSPRL 431 >gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A] gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. NATL2A] Length = 416 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 +N+G + R+ L L R + +A A + RV + +L++ Sbjct: 255 PQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLK 314 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + +E + L+E F G V ++ G E G++ L + Sbjct: 315 DEGYTVVGLA-------------EEGSSTLSEIKFQGPLV-VVVGSEDKGISLITRRLCD 360 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ++ P+ + SLN S A + ++E + + S Sbjct: 361 QLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRSISGQDPSPRL 405 >gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503] gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503] Length = 243 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 13/170 (7%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 A L+N GP+++L +NIG + R F+ + + R P + + Sbjct: 84 PSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFS-AKAVIAQDRRTPPLGGPLAKA 142 Query: 62 A-NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A A + + V N+ A+ + R + + + Sbjct: 143 ATGAVECVPFIPVV-NISRALEAI----------REKHIPIFGLAGEGALSLRDTAPTRT 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GL A+ + +++ P++P SLN++ A + ++ Sbjct: 192 CALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYHLGR 241 >gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli O157:H7 str. 1125] gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] Length = 240 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 83 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 143 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 189 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 >gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82 N+G +AR + ++ P+ G + A +SA A I R NL + Sbjct: 121 NLGAIARTAECSGVH--AIIVPKKGSAEINPDAIKTSAGALYKIPVCR-HDNLGKVGKFL 177 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + +T E + II G E G++++ I + Sbjct: 178 IDSGIQLVVST---------------EKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRI 222 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S+ + P+ SLN+S + ++++E + ++ Sbjct: 223 SDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259 >gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 166 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L +P++ +N G + R F+ L L+ P + K + + Sbjct: 6 INKLSIALYEPRIPQNTGNIGRTCLAFDF-DLHLILPLGFEINNKRLKRA--GLDYWKYI 62 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L E+ A N + + KE I L++ F + ++FGRE G Sbjct: 63 NL--ELHESFAHYSKFI-------NPSRIIGFSKEGGIPLSKIEFQSND-SLLFGREDLG 112 Query: 132 LTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166 L + + + + P+ + SLN+S A + + Sbjct: 113 LPSHVKNKCDFMATIPMPGKSNSKNDNGVRSLNLSVACGIASF 155 >gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236] Length = 230 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ + R + Q+ WP+ + + SA V+ +++ AIA Sbjct: 30 PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHTHIAGAIA 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L ++++ + A+ E I + I+ G+E+ G++ E +AL++ Sbjct: 85 HL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 I P+ + SLN+S A L+++E ++ + Q+ + + + Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYQRTQSVLSENEQQRLLFE 189 >gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp] gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 21/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R Q +V P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA L + +G V ++ G E G+ Sbjct: 159 LARTLEKLQKKGLWVVGTAG-------------EAEQELYQLDMTGPTV-LVMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN+S A + ++E + Sbjct: 205 RRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKG 248 >gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ] Length = 164 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 29/152 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R NL +L L++P SEKA + DS+++ Sbjct: 15 IVLNAPEIPGNTGSIGRTCAALNL-ELILIHPLGFDISEKAVRRA--GLDYWDSIKISEY 71 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVGIIFGRE 128 R+ ++F PKE + + + +IFG E Sbjct: 72 ----------------RDFDHFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSE 115 Query: 129 RWGLTNEEIAL-SNAIISFPV-NPLFPSLNIS 158 GL + +A SN + FP+ N SLN++ Sbjct: 116 SVGLPKDLLAKFSNRQVCFPILNKEIRSLNLA 147 >gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B] gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B] Length = 236 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 39 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 92 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 93 EL---------KAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLADQ 143 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 144 DIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187 >gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 217 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R F + Q + R G + + A +D V + N + I Sbjct: 40 HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVD-VFRYDNTQHCID--- 93 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R + P + A LN+ S + FG E+ GL+ + ++ ++ + Sbjct: 94 -----SLRAKGYQIVATTPHKDAYFLNDFDIS-KKSAFFFGTEKEGLSEQVLSQADTFLK 147 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS AV +++ Sbjct: 148 IPMVGFTESLNISVAVAIVL 167 >gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG] gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF] Length = 296 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + N G V R + L + + K +S + + V + Sbjct: 144 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVP-V 202 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +EA+A L + A + +R G +FG E WGL E Sbjct: 203 EEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETR 256 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 AL++A++ P++ SLN++ A + ++ Sbjct: 257 ALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 291 >gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis alpha153] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCVLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi str. Ikeda] Length = 266 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 11/150 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R+ FN++ + L + + A I+ V+V NL +++ Sbjct: 128 NLGAIIRSAAAFNISTIILPENNSIEENGTIAKIAVGALEKINLVKV-KNL---YNTINY 183 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + + F + + L E+ F + + G E GL N + +I Sbjct: 184 L------KKYGFWIIGLDLNNSNQLTEQTFH-SKMAFVLGSENKGLRNLTRQQCDFLIKI 236 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P++ SLN++ A ++ +E + SI Sbjct: 237 PMSHKTESLNVAGAATIIFYESFKFSIKQQ 266 >gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN] gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923] gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae] gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923] Length = 158 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P++ N G R L LV P S + + SV V ++L EA Sbjct: 13 PRIPPNTGNAIRTAAVTGCA-LHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 71 Query: 82 ADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L ++A + A L + ++FG E GL + L Sbjct: 72 NALSPARVFAFST--------------LANTLFTDVSYQAGDVLMFGPEPTGL--DAATL 115 Query: 140 SNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 ++ I+ P+ SLN+S A + V+E Sbjct: 116 ADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 151 >gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1] Length = 218 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + + ++ R G ++ + A +D + +++ ++ I Sbjct: 43 HNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAM--GAQKWVD-IHRYNDTQQCID--- 96 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T + + P E + L++ + Q FG+E+ GL+ E ++ ++ + Sbjct: 97 -----TLKKQGYRIIATTPHEDSQYLHDFDIT-QKAAFFFGKEKEGLSEEVLSQADEFLK 150 Query: 146 FPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPA 187 P+ SLNIS + + + E + E+ A Sbjct: 151 IPMVGFTESLNISVSAAITIQEVTTKLRNSDIPWQFTEEEVLA 193 >gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619] gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida W619] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 + +++L N+G R T +V P+D + R + A Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGAT--AVVVPKDKSATLTPVVRKVACGAAE 149 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 VI V V + L++ ++ T EA + ++ +G V + Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I G E G+ + ++ P++ SLN+S A + ++E + Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAKR 248 >gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22] Length = 361 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ +F + +V S A ++ ++ + L + Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I +T++ N PK + ++ G+ER GL++ I+ S+ Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SLN+S A +++ E Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 292 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---FSNLKEAI 81 N+G + R + + L +PR P ++ S A I R+ + L+E Sbjct: 142 GNVGAIFRCAAALGVDGIIL-SPRCADPLYRRSVKVSMGAVFAIPYARMGNWYDGLEE-- 198 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 R L P + A + + + + V ++ G E GL++ + ++ Sbjct: 199 ----------IRAAGFQTLALTPDQDATPM-DTVEMRERVALLLGSEGDGLSSRWLREAD 247 Query: 142 AIISFPVNPLFP-----SLNISQAVLLMVWECMENSIVSSEKNVK 181 + P++P SLN+ A + M + V + Sbjct: 248 EQVCIPMSPTAMASGVDSLNVVAAAAIACHGLMRGTAVPQGRRQP 292 >gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp. novicida GA99-3549] gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244 >gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112] gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis subsp. novicida FTE] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244 >gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM 13941] gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM 13941] Length = 496 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 19/167 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK----EA 80 EN+GM R + + + + ++ A I + ++L +A Sbjct: 345 PENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIP-IYTCADLPTWVGQA 403 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A + T N +++ ++ II G E GLT+ +A+ Sbjct: 404 RARGIHVVGATG---NVERTLYDADLPLPLM-----------IIVGNETEGLTDATLAVC 449 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 ++++ P+ P SLN+ A +++++ + + + T A Sbjct: 450 SSLVRIPMAPGQDSLNVGVAAGVILYDIVRRRLCDRHLAPTKNPTTA 496 >gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phytofirmans PsJN] Length = 247 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L ++ T KS+ + Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247 >gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 301] gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073] gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei Ss046] gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89] gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536] gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1] gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli E24377A] gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS] gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SMS-3-5] gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1] gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88] gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a] gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 55989] gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39] gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026] gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B str. REL606] gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9] gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354] gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088] gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli H736] gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli CFT073] gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655] gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T] gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli UTI89] gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli 536] gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS] gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E24377A] gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC 8739] gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli SMS-3-5] gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4196] gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4113] gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 53638] gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4076] gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4401] gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4486] gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4501] gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC869] gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC508] gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A] gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11] gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22] gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E110019] gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171] gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae 1012] gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 101-1] gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4206] gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4045] gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4042] gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. EC4115] gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli] gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli] gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. TW14588] gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989] gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1] gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88] gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39] gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a] gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026] gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82] gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43] gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA] gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 83972] gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952] gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of 23S rRNA 2'-O-ribose G2251 methyltransferase [Escherichia coli BL21(DE3)] gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str. REL606] gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)] gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1] gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15] gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella flexneri 2002017] gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042] gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli O55:H7 str. CB9615] gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088] gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1412] gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354] gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli IHE3034] gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli FVEC1302] gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 196-1] gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 185-1] gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 200-1] gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 175-1] gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 198-1] gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 69-1] gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 84-1] gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 45-1] gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 115-1] gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 182-1] gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 116-1] gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 21-1] gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 187-1] gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 119-7] gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 107-1] gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 124-1] gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 78-1] gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 146-1] gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli NC101] gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W] gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972] gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli UM146] gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 145-7] gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W] gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli DH1] gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 85-1] gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 110-3] gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 153-1] gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 16-3] gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC 9905] gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli WV_060327] gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli EC4100B] gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11] gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520] gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482] gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120] gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252] gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263] gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489] gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863] gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007] gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 57-2] gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 60-1] gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS 117-3] gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167] gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli O157:H7 str. 1044] gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736] gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718] gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA206] gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA143] gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA271] gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli TA280] gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591] gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299] gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9] gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71] gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] Length = 243 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida Fx1] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244 >gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 228 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82 N+ + R + V WP ++ + S + +D + N+ +A Sbjct: 31 HNLSAIVRTADAVGCHHVHAV-----WPEKQKWLTNNTSGGSKNWLD-THLHKNIDDA-- 82 Query: 83 DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A + R N +LA E A+ E I + II G+E+ G++ + + + Sbjct: 83 ------AASIRAHNPDVQILATHLSEDAVDFRE-IDYTKPTAIIVGQEKTGISEKALEYA 135 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A L+++E ++ Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171 >gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae] Length = 255 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 17/181 (9%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + +G +ILV N+G R L ++ P+D + + + Sbjct: 88 ELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPTVQKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A VI V V +NL + L + V EA L ++ +G + Sbjct: 146 GAAEVIPLVAV-TNLAATLKKLQ---------QRGLWIVGTAGEAEQELYDQDMTGPTI- 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +I G E G+ + ++ P+ SLN+S A + ++E + V ++ + K+ Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAKTSSKK 254 Query: 183 Q 183 + Sbjct: 255 K 255 >gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum marinum IMCC1322] gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum marinum IMCC1322] Length = 307 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 9/166 (5%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + P + L + N+G + R+ + L++ S +A +S A Sbjct: 150 AVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA-- 207 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 I +V + F+ T N + + A++ + +SG + I+ G Sbjct: 208 -IFNVEIVQ-----CNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALM-ILMG 260 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E+ GL + L +I P+ SLN++ A + ++E + N Sbjct: 261 NEQAGLPPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306 >gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli SE11] gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 243 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris] Length = 167 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71 I+L +P++ N G + R N L L+ P G+ + R A D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ L+ A + F L K N G ++FG E G Sbjct: 62 DYYAFLES--EGLNPDNAQSPTGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I P+ S+N+S V ++V+E Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157 >gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51] gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51] Length = 248 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 23/178 (12%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 ++ + P +ILV N+G R T +V P+D + R + Sbjct: 87 EEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVA 144 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A VI V V + L++ ++ T EA + ++ +G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTG 191 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V +I G E G+ + ++ P++ SLN+S A + ++E + Sbjct: 192 PLV-MIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAKR 248 >gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1] gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1] Length = 268 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 30/165 (18%) Query: 18 ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ILV P+ NIG + R N+ + + NP+ + SS VF+ Sbjct: 121 ILVAEAPEKPGNIGALLRTADAANIDAVFIANPKTDLYNPNIVRSSVG--------CVFT 172 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVGIIFGR 127 +TA S L K+ AI S + I+ G Sbjct: 173 T--------QIAMGSTA----EIISFLQEKDIAIYCAALTASEHYHLQNYQKATAIVVGT 220 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL++E + S I P+ S+N+S A ++++E Sbjct: 221 EATGLSDEWLNNSTQNIIIPMQGKIDSMNVSVAAAIVIFEAKRQR 265 >gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7 str. G5101] Length = 243 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR 15-3] Length = 282 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 33/169 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 I L + N+G + R + + L+ S + ++ + Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSIPLYRCNES 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ F I T + P + F + ++ Sbjct: 188 TFLNWSTHFR---------GMIVGT---------HLKGPVDY----RTIDFKNGPIILLM 225 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E+ GL++ + N + P SLN++ A +M++E + + Sbjct: 226 GNEQQGLSDVLVNHCNNLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274 >gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1001] Length = 247 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 25/178 (14%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L + G +ILV N+G R ++ PRD + A ++ Sbjct: 87 ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144 Query: 63 NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + V +NL A+ +L +I T A Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWIVGTAG--------------EATKSLYETELD 189 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V I+ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSAKK 247 >gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP3-BS71] gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP6-BS73] gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1087-00] gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae OXC141] gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA04375] gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41301] Length = 242 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae R6] gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family [Streptococcus pneumoniae R6] gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200] Length = 253 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 99 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253 >gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910] Length = 176 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 8/158 (5%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 VIIL + + N+G R F + ++ L P + ++ A +D Sbjct: 25 PLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGATESVDWSHE 84 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ADL N + ++ ++ + I + +I G E G++ Sbjct: 85 ADT-NTAVADLK-------SNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E + + + P SLN+S +++WE + Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWEFAKA 174 >gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 282 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N+G + R+ F L S S++ A ID + V Sbjct: 134 VLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASGALEHIDQIEV-K 192 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL EA+ LH A R AP E E+ F+G+ + ++ G E GL + Sbjct: 193 NLAEALGQLHE-----AGFRTMGLDSDAPAE-----LEKSFAGEKIALVLGAEGKGLRQK 242 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + SLN+S A + ++ Sbjct: 243 TRETVTTLARLDMPGAIHSLNVSNAAAISLY 273 >gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55] Length = 361 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ +F + +V S A ++ ++ + L + Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I +T++ N PK + ++ G+ER GL++ I+ S+ Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SLN+S A +++ E Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae D39] gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP11-BS70] gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68] gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae Hungary19A-6] gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC1873-00] gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae SP195] gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae MLV-016] gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17570] gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA41317] gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47368] Length = 242 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola ACS-139-V-Col8] Length = 266 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R+ + + + R + +S A I VRV +NL Sbjct: 120 ILDGIEDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRV-TNL 178 Query: 78 KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + L +I+AT + A S + +I G E G++ Sbjct: 179 GQVVDQLKTKGVWIFAT---------------DMAGQDIRSWNSQGPIAVIIGNEGQGVS 223 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + ++ I+ P+ SLN S A ++++E I Sbjct: 224 KKLLDHADQTITIPMVGHVQSLNASVAASIIMYEVASKRI 263 >gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC 29256] Length = 249 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249 >gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7] gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7] Length = 238 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 21/148 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R F++ Q+ L N ++K S A+ + ++ NL + I+ Sbjct: 105 QDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHL--SCIYGNLTQLIS 162 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L + + N N +I + + G E G+ E +A Sbjct: 163 QLQEKGVVVIGSALENGKN--------------IAQINRYSKMAFVVGNEGNGMNPEVLA 208 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+N SLN++ A +M++ Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGSIMMY 235 >gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 289 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 27/192 (14%) Query: 7 QLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L ++ P V +L + N G V R + + + K +SA Sbjct: 107 SLADALSPPPTLVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAG 166 Query: 64 A---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ- 119 + V+ R F L A+ + LA A + G Sbjct: 167 SLFHVPVVAGTR-FETLIGALRECGLTV-------------LAADGAGEHTLDAALDGGL 212 Query: 120 ---NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +FG E WGL E + + ++ P+ SLN++ A + ++ ++ Sbjct: 213 LDRPTAWVFGNEAWGLPEEILRAVDHVVRVPIYGRAESLNLATAAAVCLY---ASARAQR 269 Query: 177 EKNVKEQNTPAT 188 PA Sbjct: 270 AGRAVPGAAPAD 281 >gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 33 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 90 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 91 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 136 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 137 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 193 >gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 224 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 21/155 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 I+L D Q N+G + R + + + L +EK SS + V++ Sbjct: 76 IVLDDIQDPGNLGTMIRLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRLHVMEKK 135 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + L+ N+ ++ + V + + +FG E G Sbjct: 136 EILEYLQT----------------ENYHVLVTTLQRDSVAYTEMQLKEKNAFVFGNEGHG 179 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E + L+ I P++ SLN++ A ++++ Sbjct: 180 VSKEFLELAEQKIIIPISGQAESLNVAMAAGIILF 214 >gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum PSI07] Length = 249 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62 +L + +GP ++LV N+G R ++ P+D A + ++ Sbjct: 87 ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T EA L + F G Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA-------------DEAEQDLYQADFKGA 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ + ++S P+ SLN+S A + ++E + K Sbjct: 192 -IALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAK 249 >gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099] gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099] Length = 274 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R + + LV S + ++ + + + + Sbjct: 120 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAK--AT 177 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +A + T + +++SV + V ++ G E+ GL Sbjct: 178 TEAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 A + ++ P SLN++ A +M++E ++ Sbjct: 225 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 265 >gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1] Length = 269 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 15/149 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG V R+ L+ P P ++ S + + + + I +L Sbjct: 131 NIGAVFRSAAALGF-DAVLLTPSSSDPLFRRSVRVSMGTVFQLPWTYLENGSPDYIGELR 189 Query: 86 ---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F+ A A R+ K + P+ + S + ++ G E GL +E I + Sbjct: 190 NAGFVTAAMALRRDTIK-INDPR---------LASVDRLAVLLGTEGEGLKDETIDSCDY 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 I P++ SLN++ A + W+ ++ Sbjct: 240 TIKIPMSHGVDSLNVAAASAVAFWQLGKH 268 >gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27] Length = 260 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 15/167 (8%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A V++L+ + N+G + RA L LV S + +S A + Sbjct: 107 AAPLVLVLLGLEKPGNLGAILRAADGAG-ADLVLVAEGVDLFSPQVIRNSTGAVFALPVY 165 Query: 72 RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +EA AR ++A L V + G E Sbjct: 166 PVAE--EEA-----------ARFLEEQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDK 212 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + + P+ SLN++ L+++E + + Sbjct: 213 GLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259 >gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145] gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145] Length = 230 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 18/154 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82 N+ V R + ++ W S K R ++ + + +V S L A+ Sbjct: 31 HNLSAVVRTADAVGVHEMH-----AIWLSSKMRVSGGTALGSQNWV-NVHHHSQLSPAVE 84 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + + V + A+ E I Q I+ G+E+ G T E + +++ Sbjct: 85 QI--------KQQGMQVVVTHLSDQAVDFRE-IDYTQPTAILLGQEKHGATEEALKIADH 135 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ + SLN+S A +M++E + Sbjct: 136 HVKIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 169 >gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU 1054] gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia HI2424] Length = 260 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K S Sbjct: 103 PAHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160 Query: 62 ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ + +++ EA+A+ V Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae] Length = 244 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 22/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R+ + +V P+D + A+ + A + +RV + Sbjct: 99 ILDGITDPHNLGACLRSAEAAGI-DAVIV-PKDKSAQLNATAKKVACGAAESVPLIRVTN 156 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ + +I T EA L E +G + ++ G E G+ Sbjct: 157 LARTLRQ-LQQHIWIVGTAG-------------EANHTLYESKLTGA-IALVMGAEGEGM 201 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ + SLN+S A + ++E + Sbjct: 202 RRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVRQR 241 >gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 182 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 9/154 (5%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K I+L + N G + R ++ P K ++ AD ++ R Sbjct: 26 KQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTAMGADKMVP-CR 84 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + A+ T R + A + + I+FG E G+ Sbjct: 85 VMPDSATAVR--------TLREEGYRMILAAECMPGSRFAWEMKYEFPLAIVFGNEALGV 136 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + L + ++S P+ S+N+ + +++ Sbjct: 137 APETLELVDGLVSLPMFGEKSSINVGNSAAAILY 170 >gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307] gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307] Length = 279 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 14/177 (7%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 AP + ++ L Q N+G + R + ++ L D W + R+S+ A Sbjct: 111 APSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAA 170 Query: 65 DCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + S++ +L +A A A R+ + P Q + Sbjct: 171 LEL--SMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPD-----------WHQPSLL 217 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + G E GL + ++ P + SLN++ A +++ E + E Sbjct: 218 LLGNEGSGLDPALVQQGVTALTIPHHAAVESLNVAVAAGVLLLERVRQGHDRRESAA 274 >gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp. RED65] Length = 246 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 29/176 (16%) Query: 10 NSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 +S P +LV N+G R + ++ P+D A + A Sbjct: 90 DSLDEPAFLLVLDSVTDPHNLGACLRTADAAGVHG--VIAPKDKAVGLTATVSKVACGAA 147 Query: 66 C------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 V + R L+E + ++Y T A + Sbjct: 148 ESVPFYQVTNLARTMKELQE--RGI-WLYGTAG--------------EASESVFKTDLKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G E GL + +I+ P+ SLN+S A + ++E + S Sbjct: 191 PIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEAVRQRQSS 246 >gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 7803] Length = 229 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72 +LV+ + N+ + R+ + + V+ PR S++ + + +R Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTF------NSTAQGSQRWVP-LR 76 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + A+ L ++R A + F+G + G E+WGL Sbjct: 77 DHATIASAVHHL--------KDRGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 T E L + + P+ + SLN+S A +++E + + + PA + Sbjct: 128 TEEATGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGVAPHNGEGIPAEQ 184 >gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65] Length = 229 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 12/148 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ F + +L +V P D + + R + + + +V+ ++ +AI Sbjct: 30 PHNLSAIIRSCDAFAVNELNVVWPYDDY--QTFRGRAMGSQQYV-NVKTHKDVSQAIQGF 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + A+ + I + I+ G E+ G++ + + L + I Sbjct: 87 --------KQQGYQIVAAHFCDQAVPHYD-IDYTKPTAIVMGAEKNGVSAKAMDLVDHSI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ + SLN+S A L++ E M Sbjct: 138 IVPMEGMVQSLNVSVAAALILSEAMHQR 165 >gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK] Length = 234 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ + R + ++ V WP E R S A A ++ + N+ +AI Sbjct: 30 PNNVSAIIRTADAVGVHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T + + + AI + + + IIFG E+ G+T E +A+++ Sbjct: 84 --------THLKAQGMQVLATNLSDTAIDFRD-VDYTKPTAIIFGGEKNGITAEALAMAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + ++ P Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179 >gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + L + + ++ L D N+G + R+ +F L LV+ S A ++ Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243 Query: 62 -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+ V AI+ F A + + V + L+ + Sbjct: 244 EGGAEHV-----------RAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKM 292 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G+ER GL++ + +S SLN+S A +++ E Sbjct: 293 V-LVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB] Length = 249 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 19/159 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL N+G + R+ F + L R + +SA A I RV + Sbjct: 97 VLILDGILDPHNLGALIRSAHCFGANGIILPERRAASVTGTVIKTSAGAARHIPIARV-A 155 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL A+ +L +I+ AR +SV P VG++ G E G Sbjct: 156 NLARALDELKTKGFWIFGADARA---DQSVSDPDYQGA-----------VGLVMGGESKG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + +IS P+ SLN+S + +++ E Sbjct: 202 LRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIRR 240 >gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184] gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184] Length = 260 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K S Sbjct: 103 PAHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160 Query: 62 ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ + +++ EA+A+ V Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476] Length = 286 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81 N+G + R+ N+ LV P P +A S + R+ ++ + + Sbjct: 145 NVGAIFRSAAALNV-DAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVHDWPGQGL 203 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 LH + TA ++ ++ + + + + + + ++FG E GL+ IA + Sbjct: 204 ERLHALGFKTA-------AMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 + P++ SLN++ A + WE Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283 >gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC 14685] Length = 250 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129] gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252 homolog gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae M129] Length = 242 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + Q N G + R + + + +S ++ +N Sbjct: 98 VMLHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFY-QNLVQVTN 156 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L AI L + ATT R K + ++RI ++ G E GL Sbjct: 157 LSYAITTLQKHGFWTVATTLDERLKPKDYR-----QVDFDKRI-------LLVGNEDKGL 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ + P+NP SLN+S AV ++++ Sbjct: 205 NALLLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 240 >gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ + A ++L D Q N+G + R F + + K ++ + Sbjct: 97 PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVVQATMGS- 155 Query: 66 CVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + ++ +++L+ I R V + E G+ I+ Sbjct: 156 --LSRTQIHYTDLESFI-------------RTVRLPVFGALLDGTSIYE-TRWGKEGLIL 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G++ + + L + ++ P SLN++ A + E Sbjct: 200 MGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARM 246 >gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ + A ++L D Q N+G + R F + + K ++ + Sbjct: 97 PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVVQATMGS- 155 Query: 66 CVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + ++ +++L+ I R V + E G+ I+ Sbjct: 156 --LSRTQIHYTDLESFI-------------RTVRLPVFGALLDGTSIYE-TRWGKEGLIL 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G++ + + L + ++ P SLN++ A + E Sbjct: 200 MGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARM 246 >gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae] Length = 169 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P++ N G R L LV P S + + SV V ++L EA Sbjct: 24 PRIPPNTGNAIRTAAVTGCA-LHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 82 Query: 82 ADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L ++A + A L + ++FG E GL + L Sbjct: 83 NALSPARVFAFST--------------LANTLFTDVSYQAGDVLMFGPEPTGL--DAATL 126 Query: 140 SNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171 ++ I+ P+ SLN+S A + V+E Sbjct: 127 ADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 162 >gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] Length = 243 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +I P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC 3083-94] gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC 3083-94] Length = 243 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +RV + + N V EA L + +G + ++ Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 195 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf. novicida 3523] Length = 248 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSSPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L ++ ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGIWVIGLAGEADDSLYSMNLED--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244 >gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC 796-83] gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 240 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 83 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +RV + + N V EA L + +G + ++ Sbjct: 143 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 191 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 192 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239 >gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143] Length = 253 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 99 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253 >gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC 49176] Length = 279 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 19/155 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L D N+G + R +T + + + K S+ + + +L Sbjct: 140 VLEDTADPGNLGTIMRTAEAAGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPF-TYVEDL 198 Query: 78 KEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 KE I +L YAT + ++K + II G E GL+ Sbjct: 199 KETIKELKKSGISFYATHLKGEKSYKDIKY--------------SGRSAIIVGNEARGLS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +E L++ + P+ SLN + A LM++E Sbjct: 245 DEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279 >gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 267 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 12/169 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ N V + V N G + R + S K +SA Sbjct: 108 SAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAG 167 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + R N+K+ + L R + ++A V Q Sbjct: 168 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVDLAEADLSQPTAW 216 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GL E + ++ + P+ SLN++ A + ++E + Sbjct: 217 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 264 >gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)] Length = 159 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 66/165 (40%), Gaps = 20/165 (12%) Query: 38 FNLTQLRLVNPRDGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 + +L +V+ R +P + S +A V+VFS+ +E + L Sbjct: 1 MGVEKLYVVDSRKLFPDDWEQLRQRKSLLKPSVSAIK-WTFVKVFSSTEECLDHLE---- 55 Query: 90 TTARNRNNFKSVLAPK---EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 V +P + ++L + ++ + + + FG E G++ I S A + Sbjct: 56 ----KYRYTSIVTSPHIKGQNNVLLQDGDYTQKRLAVWFGNESRGISEIAIKRSEACVQI 111 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + SLN++ + ++++E + ++N + + + Sbjct: 112 EMAGMIESLNLATSTGIVLYEVTKQRRAYQQQNKRGRRVDPPVVQ 156 >gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 17/166 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + L + R S +SA A + RV +L++ Sbjct: 106 EDPHNLGALLRSADGAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQ 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ R P A N + ++ G E GL + Sbjct: 166 MKRANIWVLGLDERG--------TPDYTAFDFN------SDCVLVLGSEGTGLHDLTKKT 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + ++ P+ SLN+S A ++++E + +K Sbjct: 212 CDHLLRIPMAGSVSSLNVSVAGAVVMYEALRQRSQPLPSALKPVKP 257 >gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 244 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIAALDNPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AENVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025] Length = 248 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL + N G + R N+T + + R + +S A I R Sbjct: 100 NPLLLILDELNDPHNFGSILRTADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 159 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +NL +A+ L +I+ T + SG + +I G E Sbjct: 160 V-TNLGQALDKLKAAGFWIFGT--------------DMNGTPSTQWNTSG-KLALIIGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+++ + +++ P+N SLN S A ++++E N Sbjct: 204 GRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii Sb227] gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 243 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +RV + + N V EA L + +G + ++ Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 195 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii] Length = 270 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 10/167 (5%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S G V++L ++ NIG + R + LV+ G +++ ++ V Sbjct: 112 ESLSGDVVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRG-YVFS 170 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + EA+A R+ + V+ + + + E + + ++FG E+ Sbjct: 171 LPIVLATRDEALAFF--------RDGGM-RPVVFEADGKLSIGELDGIDERLVLVFGSEK 221 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G + E ++ +S P+NP SLN+S + + + ++ Sbjct: 222 TGPSGEFAGVATESVSIPMNPAAESLNVSVSAGIALHRRARRNLSRP 268 >gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 235 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 15/149 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N+G + R +F +V+ ++K S+ + I +R+ L AI Sbjct: 101 QDPGNLGTIIRTAHSFGF-DAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMP--LDVAI 157 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A + + V A N + + ++ G E G+++ + L + Sbjct: 158 AQI----------KAWNIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCD 207 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + + F SLN++ A ++ + + Sbjct: 208 GTVKIETS-QFESLNVAIASAIICYTLRK 235 >gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 333 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL N+G + R + + R + +SA A + RV + Sbjct: 186 IIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAGAIEYVPVARVTN 245 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ T ++ I + ++ G E G+ Sbjct: 246 IAQTIDYLKEQNLWVVGT--------------DQSGEKSFYEIDLKGPIALVIGSEGEGM 291 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN + A ++++E ++ Sbjct: 292 GKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQR 331 >gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 313 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 154 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 213 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI L R R + L ++ E F + ++ G E Sbjct: 214 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 263 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ +AI P++ SLN S A + ++ +++ Sbjct: 264 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 309 >gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 151 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 25/164 (15%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80 P++ N G R ++L LV P G+ E ++ A D + + V +L A Sbjct: 5 PEIPGNTGNAIRLAAITG-SELHLVEP-FGFELEDSKLRRAGLDYHDLAVLHVHPDLPSA 62 Query: 81 IADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A L + A T+ + S + A + ++FG E GL E Sbjct: 63 WAALAPERVLAFTS---DGEASYTDIEYQAGDV-----------LMFGPESVGLPAE--V 106 Query: 139 LSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ ++ P+ P SLN++ A + V+E + Sbjct: 107 KTDPHVTSRVRLPMLPGLRSLNLANAASIAVYEAWRQHGFPGAQ 150 >gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans AK-01] gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans AK-01] Length = 158 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+LV+P++ N G + R L L+ P + + VR+ + Sbjct: 5 IVLVEPEIHWNTGNIGRTCLGAG-ADLHLIKPLGFSLDSSHVKRA--GLDYWEKVRLHTW 61 Query: 76 -NLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + E +A+ +N +++L K A + + ++ G E GL Sbjct: 62 GSFDE----------FSAKMQNAPDETLLFSKLGARPFWDMPSHMTRLFLVLGAETRGLP 111 Query: 134 NEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ SLN+S ++++E M Sbjct: 112 QGVLDQYPGNVYHVPITNEIRSLNLSTTAGIVLYESMRG 150 >gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii M21/2] Length = 275 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 29/157 (18%) Query: 27 NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79 N+G + R A N L+ P P +A S + ++ + + Sbjct: 134 NVGAIFRSAAALNM---DAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190 Query: 80 ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ A + R+ + + + + + I+ G E GL Sbjct: 191 GSAQLHALGFKTAAMALSDRS-------------VSIDDAALAAEPKLAIVLGTEGDGLA 237 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 N IA + + P++ SLN++ A + W+ Sbjct: 238 NSTIAACDYTVKIPMSHGVDSLNVAAASAVAFWQLGR 274 >gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae CGSP14] Length = 253 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 99 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 158 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253 >gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54] gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CCRI 1974] gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS69] gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC3059-06] gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54] gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 70585] gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV200] gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus pneumoniae BS455] gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP14-BS292] gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae SP-BS293] gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458] gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457] gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4] gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae TIGR4] gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae TIGR4] gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC 700669] gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae JJA] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937] Length = 244 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 22/175 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + L+ +I T A + Sbjct: 144 GAAETVPLIRVTNLARTLRFLQEQNVWIVGTAG--------------EADHTLYQSKLTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 PLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244 >gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8] Length = 260 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 29/174 (16%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--- 68 A V++L+ + N+G + RA L LV S + +S A + Sbjct: 107 AAPLVLVLLGLEKPGNLGAILRAADGAG-ADLVLVAEGVDLFSPQVIRNSTGAVFALPVY 165 Query: 69 -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ R L+E +L + AT P+ + G V Sbjct: 166 PVAEGEAARF---LEE--HNLPLVAAT-------------PEGERLYWEGDYRGG--VAF 205 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E GL + + P+ SLN++ L+++E + + Sbjct: 206 LLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259 >gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 372 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + +V+ + R S A+ +D + ++++ +E + Sbjct: 187 GNVSAAFRSADALGFQSVHVVSCDSSKRYKDNRHVSMGAEKWLD-IELWNSTQECFEVLK 245 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + I+ G E G+++E + LS+ Sbjct: 246 SRGYRIATTHVGMDAVSIYDMDWTCP------------TAIVVGNENRGISDEALELSDL 293 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+ + S N+S A +++ Sbjct: 294 HCSIPMKGMVDSFNVSVAAGILMH 317 >gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae CDC0288-04] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENSLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera] Length = 369 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + +V+ + R S A+ +D + ++++ +E + Sbjct: 184 GNVSAAFRSADALGFQSVHVVSCDSSKRYKDNRHVSMGAEKWLD-IELWNSTQECFEVLK 242 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + I+ G E G+++E + LS+ Sbjct: 243 SRGYRIATTHVGMDAVSIYDMDWTCP------------TAIVVGNENRGISDEALELSDL 290 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+ + S N+S A +++ Sbjct: 291 HCSIPMKGMVDSFNVSVAAGILMH 314 >gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKNAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T ++ P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +E+ Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAER 249 >gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. CCGE1003] Length = 247 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 28/185 (15%) Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSE 55 P A L G +++L N+G R ++ PRD + Sbjct: 80 PLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNA 137 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVL 111 A ++ A + + V +NL A+ +L +I T+ A Sbjct: 138 TAAKVASGAADTVPYITV-TNLARALRELKEAGVWIVGTSG--------------EATKS 182 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V I+ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 183 LYETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQ 242 Query: 172 SIVSS 176 V Sbjct: 243 RSVKK 247 >gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 267 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVI 68 ++IL + NIG + R + + L N + + S + I Sbjct: 110 NSLILILDGIEKPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKIFI 169 Query: 69 DSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + + S L+E + I T + + A L + + N+ IIFG Sbjct: 170 EKMGSIISWLQE---NKVKIVGT-----GFYNH-----QKAKNLYKTKLNYSNLAIIFGS 216 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++N ++N II+ P+ SLN+S A+ ++++E + Sbjct: 217 ENKGISNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIYEIIRQR 261 >gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14] Length = 250 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L P IL N+G R+ + +V PRD + A+ + Sbjct: 86 PDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +RV + A T R N V EA L + +G Sbjct: 144 GAAENVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLYQSKMTG-R 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 260 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 119 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 176 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 177 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 227 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 228 EALADEKLYIPIKGRAESLNAAVAAGIMIY 257 >gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 25/167 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLV-----NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + NIG + R FN++ + +V N R +++ + +A+ S+L Sbjct: 78 EHDLNIGSIVRTGNAFNVSGVHIVGKKKWNRRGALVTDRYLNVHHHAE--------VSSL 129 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 E AR + + E + + E + +IFG+E GL+ E + Sbjct: 130 VE-----------WARENDYQLVAVDNMEGSTPIAETALP-ERAVLIFGQESNGLSAELL 177 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 A +++ + P S+N++ A + + + + + + Sbjct: 178 AAADSAVYIPQYGSTRSMNVAAAAAISMHMWIMQHGPRNAPAPESRP 224 >gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 294 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L Q N+G + R + + L+ S K ++ A + Sbjct: 144 IVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEGIAV 203 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + + A + ++ Q + I+FG E G++ Sbjct: 204 MELMDFVRSERVTLCAAA------------CDDGACMHYAADLRQPLVIVFGNEANGVS- 250 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EE+ ++ I P+ SLN+S AV +++E M Sbjct: 251 EELLAASEHIYIPMCGSAESLNVSAAVAAVLYEAMRQR 288 >gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 361 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ +F + +V S A ++ ++ + L + Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I +T++ N PK + + G+ER GL++ I+ ++ Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSAD 328 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SLN+S A +++ E Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2] Length = 243 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIATLDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071] gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071] Length = 266 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 28/177 (15%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P P+++L +P+ N G V R F + +V D P A + Sbjct: 114 PPEPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASG--VVTTGDLDPWHPAVVRAG 171 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A LHF T R + A A G V Sbjct: 172 -------------------AGLHFA---TPVARRAVPELPAGPLWAFDAEGEDLRGLRVP 209 Query: 123 ----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + FG ER GLT ++ +++ P+ P S N++ +V + ++ + Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHWSLGAGRP 266 >gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral taxon 014 str. F0314] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249 >gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354] Length = 160 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 31/162 (19%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P I+LV+P++ N G V R ++ +L L++P ++ + Sbjct: 2 AIPSPSIVLVNPEIAGNTGAVGRTCVALDM-ELVLIHPLGFTITDTRLKRA--GLDYWQH 58 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVG 122 +R L E R+ F +P+ + L E ++ Sbjct: 59 IR----LAEF------------RSWEAFFEERSPRADQLFLFEEYAPRDFYQPEYPEDAY 102 Query: 123 IIFGRERWGLTNE--EIALSNAIISFPV-NPLFPSLNISQAV 161 ++FGRE GL E E + +S P+ + SLN++ V Sbjct: 103 LVFGRETKGLPPEIVEAHRAQM-VSLPMKSDKVRSLNLANTV 143 >gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1] gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1] Length = 246 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 17/157 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 IIL + + N+G + R + + R + +S A + RV + Sbjct: 97 IILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNL 156 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + E +I+ T A+ +++ ++ + ++ G E G++ Sbjct: 157 ARTVDELKERGVWIFGTDAKGTQDYR--------------QLDGVIPLALVIGSEGKGIS 202 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 203 RLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239 >gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 254 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIY 251 >gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis] gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis] Length = 342 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 25/165 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNP-RDGWPSEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P ++KA +S A V Sbjct: 185 ILVLEGIQDPGNLGTLVRSAVAFRWGGIFLL----PGCCDPFNDKALKASRGASF---QV 237 Query: 72 RVFS----NLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + S +L EA+ D + + A + P + + ++ Sbjct: 238 PIVSGSWHHL-EALKDEFQMKMLAGHPASDDEQ-----TPVSELSQGFADSLADIPICLV 291 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E GL+ + + ++S P+ + SLN++ A + ++ Sbjct: 292 LGNEGQGLSEKSLQECQ-LVSIPMARNYESLNVAVAGGIFLYMLQ 335 >gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 361 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ +F + +V S A ++ ++ + L + Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I +T++ N PK + + G+ER GL++ I+ ++ Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSAD 328 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SLN+S A +++ E Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 268 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 22/150 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLKE 79 N+G + R+ + LV PR P ++ S + R+ + L+E Sbjct: 133 NVGAIFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPGSVTRLQE 191 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A + A + + LA +E + + ++ G E GL +A Sbjct: 192 A---GWTVAAMALADDSVTLDELAAREP-----------ERLALVMGTEGDGLGTRTVAA 237 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + P+ SLN++ A + ++ Sbjct: 238 CDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267 >gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 252 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 22/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + L ++ +G II G E G+ Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPT--IIMGAEGKGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ P+ SLN+S A + ++E + V + Sbjct: 204 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 248 >gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708] Length = 323 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 26/174 (14%) Query: 11 SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S PVI++ N+G + R L + R + +A A ++ Sbjct: 155 SVTDPVIVVADGITDPHNLGAIIRTAEAIGSQGLVIPQRRASGITSTVVKVAAGA---LE 211 Query: 70 S---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV NL A+ L +IY T A +V + Sbjct: 212 NFPVARVI-NLSRALEQLKEAGYWIYGTAAAGSEPIHTVKF--------------SGSTV 256 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL+ + ++S P+ PSLN S A + ++E +++ Sbjct: 257 LVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYEIYRQRSLNT 310 >gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2] Length = 311 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 19/168 (11%) Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A+ P+++ L N+G + R+ F + + R + A +SA A I Sbjct: 156 DRAEAPLLVALDGITDPRNLGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARI 215 Query: 69 DSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +V NL AI +L F+ + + L E FS + I+ Sbjct: 216 KVAQVV-NLARAIDELKKQNVFVVG-------------LDMDGEVELPELTFSRDPLCIV 261 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + I+S P+ SLN A + ++E Sbjct: 262 VGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIAAAVSLYEVARTR 309 >gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + NIG + R+ + F L L + R+SSA A + + + + Sbjct: 86 VILDEVTDVGNIGAIVRSAYAFGADGLILSGMKTCNLEAILRTSSAAAFELP--IALVPS 143 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 K+ + +L I T L + V +++ +I G E GL+ + Sbjct: 144 TKDMLNELKQIGFT-----------LYGADMDGVDVQKVTFAPKRALIMGSEGKGLSPKV 192 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++S + F SLN+S A ++ Sbjct: 193 KERLDTVVSIKMARAFDSLNVSAAAAILC 221 >gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 237 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + ++ ++IL + Q N G + R+ F + + + +E +S A Sbjct: 80 ENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPERNSVRINETVVKTSTGAI 139 Query: 66 CVIDSVRVF--SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V+V SN E + + + +Y A + Q V Sbjct: 140 EYVPIVKVTNLSNTIEKLKKIDYWVYGAAG--------------EAESSSAEEQYPQKVV 185 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GL + + +I P+ SLN+S A +++ E + Sbjct: 186 LVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILLSEIAK 233 >gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805] Length = 370 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 23/167 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78 N+G + R+ + L R + +A A + RV LK Sbjct: 177 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 236 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A + + E E + + ++ G E GL+ Sbjct: 237 DA---GYRVVGLA--------------EEGDQTLEEVDLDGPLVVVTGSEDQGLSMLTRR 279 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + +I P+ + PSLN S A L ++E + + Sbjct: 280 HCDHLIRIPLRGITPSLNASVATALCLYEVARRGWMKGLRGQNPSPQ 326 >gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 12/163 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++ L N+G + R+ F + + R + A +SA A I + Sbjct: 164 KPLIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQ 223 Query: 73 VFSNLKE--AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + ++ A D + + + P+ A + + I+ G E Sbjct: 224 TVNLTRQLKAYQDAGCMVVGL-----DMEGDITLPELGAPD----GLADGPLVIVVGAEG 274 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + I+S P+ SLN A ++++ E Sbjct: 275 GGLSRLVQETCDQIVSIPMANSVESLNAGVAASVVLYAVAEAR 317 >gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 285 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R + + LV S + ++ + + + + Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAK--AT 188 Query: 77 LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +A + T + +++SV + V ++ G E+ GL Sbjct: 189 TEAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 235 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 A + ++ P SLN++ A +M++E ++ Sbjct: 236 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 276 >gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6] Length = 242 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N++ + + R + ++ A + R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + + + + T ++ G + +I G E Sbjct: 154 VTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342] Length = 361 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ +F + +V S A ++ ++ + L + Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAERVEPITGDSFIDTLDQFR 282 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I +T++ N PK + ++ G+ER GL++ I+ S+ Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ SLN+S A +++ E Sbjct: 329 LSVAINGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 235 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V + R ++ + + + +A+A+L Sbjct: 30 PHNVSAIVRTCDAVGIHRVHTVWEKKYQFR---RGTAMGSQQWVRQTN-HDGINDAMAEL 85 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + V + A+ + + + I+FG+E++G T+E AL++ I Sbjct: 86 --------KGQGMQVLVTHLSDTAVDFRD-VDYTKPTAILFGQEKYGATDEAKALADQDI 136 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 P+ + SLN+S A L+++E ++ N ++ Sbjct: 137 VIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNTQQLPE 177 >gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23] gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1] gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa M23] gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L ++A G ++LV Q N+G R+ +T + + + + R +S+ A Sbjct: 90 DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + +L+E +IY + A+ L NV Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E GL + + P+ SLN+S A + ++E + + Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248 >gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. 1-1C] Length = 280 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 33/169 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 I L + N+G + R + L+ S + ++ + Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ F I T + +++++ F + ++ Sbjct: 188 TFLNWSTHFK---------GMIVGTHLKGSVDYRTID-------------FKNGPIILLM 225 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E+ GL++ + + + P SLN++ A +M++E + + Sbjct: 226 GNEQQGLSDVLVNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274 >gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710] Length = 261 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTANAMGVH--AVIAPKDKSAGLNATVSKVACGA 157 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 158 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 203 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260 >gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] Length = 259 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 14/145 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIAD 83 EN+G +AR+ + L PR +A S + V ++ ++ + I + Sbjct: 123 ENVGSIARSAAALGVDSYLL--PRQSPHPYGRRALRVSMGYVSKL-KVHIYEDISQTIQE 179 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L ++ ++ A L ++ S Q ++ G E G++ E + + + + Sbjct: 180 L---------KKDGYRIYAAEVTPDATLLSQVKSPQKWVLLMGHEGKGISQEVLDICDEV 230 Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168 +S + P S N+S A +M+++ Sbjct: 231 LSIEMAPGVKSFNVSVAASIMMYQL 255 >gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 19/181 (10%) Query: 1 MTPYAPQLQNSAKGP--VIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SE 55 + P A ++ +GP +IL V Q N+G + R+ F T L P P ++ Sbjct: 97 LVPPAHSVEKMLEGPGEALILIAVGLQDPGNLGTLIRSAEAFGATG-VLTTPGTVSPWNQ 155 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 KA +SA + + + E + + K + A K+ A+ + E Sbjct: 156 KAMRASAGSVFRLPVAVATPDAMETLE------------QQGIKLLAAMKDDAVAIGEAD 203 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + I+ G E GL + + L++ ++ P SLN + A ++++E Sbjct: 204 LTVGS-AILIGNEGAGLNEDWLRLADQRVTIPCPGWVESLNAAVAGSILLYEASRQRGAR 262 Query: 176 S 176 + Sbjct: 263 T 263 >gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 290 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 10/155 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL D Q N+G + R + + +EK + + + V Sbjct: 143 VILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLP---VLQT 199 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A+ + + + L+ + + + VGII G E G++ Sbjct: 200 --GALEKTVLFL-----KEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSM 252 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + + P+ SLN+S A +++++ Sbjct: 253 ADLCDDLYKLPMYGHAESLNVSVAAGILMYDIARA 287 >gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 196 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L KG +++ + N+ + R+ F + + L +P +SS++ V Sbjct: 17 LARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHLYYTTSAFPVLGQKSSASARKWV 76 Query: 68 I-----DSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + D+ ++ L D +F + AT R K + A +A Sbjct: 77 MRTRHSDATSMYRGL----KDQNFQVLATGFSERA--KPLTAWDLSAP-----------T 119 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +I G E G + E +++ I P+ + SLN+S A ++++E Sbjct: 120 AVILGNEHNGASPELAQVADGEIYIPMMGMVQSLNVSVAAAIILYEAWRQRWAKG 174 >gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS 92-3] Length = 255 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 98 PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 157 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 158 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 204 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 205 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 254 >gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 23/180 (12%) Query: 7 QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 +L ++ +G +++L N+G R + ++ P+D + + ++ Sbjct: 86 ELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVGAH--AVIAPKDRAVGINATVQKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L++ ++ TT + A Sbjct: 144 GAAETVPYITVTNLARTLRQLQERDIWVVGTT--------------DDAEESLYEPDYSG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 V + G E G+ + +++ P+ SLNIS A + ++E I+ ++ Sbjct: 190 GVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARRQRIMKMRQD 249 >gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon] gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1] Length = 249 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L ++A G ++LV Q N+G R+ +T + + + + R +S+ A Sbjct: 90 DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + +L+E +IY + A+ L NV Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E GL + + P+ SLN+S A + ++E + + Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248 >gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira defluvii] Length = 246 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +++L + N+G + R + + + R + +SA A + V Sbjct: 90 TPLLVLLDGVEDPHNLGAILRTAEASGVQGVFIPERRAVGLTSVVAKASAGAVDYMP-VG 148 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL I R ++ V A A + V ++FG E G+ Sbjct: 149 RVPNLSRLIE----------RLQDAGIWVYALDAEAPKAYTELDFSGPVALVFGGEGTGV 198 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + P+ SLN+S + ++++E + + K + Sbjct: 199 RPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQRREGAGKKL 246 >gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio aespoeensis Aspo-2] gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio aespoeensis Aspo-2] Length = 266 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ +I L Q N+G++AR ++ L + + + A SSA A + Sbjct: 112 PDAPLPLIIALDQVQDTGNVGVLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKL 171 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGR 127 + NL A+ D N ++ + LN + ++ G Sbjct: 172 PVAK-AGNLAAALKDCA----------NYDYTLYYAQTGEGSLNAYEAELKTPAVLVLGN 220 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ L + +S P F SLN++QA ++V E Sbjct: 221 EEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQAGAVLVSEFSRR 264 >gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50] Length = 251 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 34/169 (20%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72 + IL + + N+G + R + + R + +SA A V+ Sbjct: 103 IFILDEIEDPHNLGAIVRTANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTN 162 Query: 73 VFSNLKE--------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + E A AD+ L R +G++ Sbjct: 163 LAKTIDELKKRGMWFACADMD-----------------------GELMYRCNLTGPMGLV 199 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ + ++S P++ SLN S A ++ +E + + Sbjct: 200 IGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVLGYEVVRQRM 248 >gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44] gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni CNB-2] gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44] Length = 256 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 21/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75 +L N+G R + ++ P+D A + ++ A + V + Sbjct: 104 VLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE +I T+ + K + ++ G E G+ Sbjct: 162 LARTLKELKERGIWIIGTSG---DADKHLYQMDLTGP-----------TALVLGAEGDGM 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A++S P+ SLN+S A + ++E + + ++ Sbjct: 208 RQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQRLAAA 251 >gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech586] Length = 244 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + A +++L N+G R+ + +V PRD + A+ + A Sbjct: 89 LASHATPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVACGAA 146 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +RV +NL + L +I T A + + Sbjct: 147 ETVPLIRV-TNLARTLRFLQEQNIWIVGTAG--------------EADHTLYQSKLTGPL 191 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + +IS P+ SLN+S A + ++E + V Sbjct: 192 ALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRAV 244 >gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5] Length = 260 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 A L ++L Q N+G + R+ + P + S K S Sbjct: 104 AQPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162 Query: 64 ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + +++ +A+A V V Sbjct: 163 AHFLLS---IHEDVEPDALAG------------RLDVPVALTDSHGAQAVYDCDLAGPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola DSM 245] Length = 248 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 11/165 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ ++IL + NIG + R + L+ R + +SA A + Sbjct: 94 PRNSAPLLVILQGLEDPHNIGAIIRTAEAAAADAVVLIEGRGAPVNAAVHKASAGA---L 150 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +R+ + L I V A A + ++ G E Sbjct: 151 SHMRICK-----VKSLVRIM---EYLHERGFRVYAADMDAELNYTDADLKGPTALVLGAE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL+ E + + + P+ SLN+S ++++E M + Sbjct: 203 GSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILLYEAMRQRL 247 >gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 265 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 12/151 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++LV +N+G + R F + + KA S A I Sbjct: 122 VVVLVGISNHDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTD 181 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A + A R + L+P+ S + + G E GL Sbjct: 182 T-----AGFTAMLA----ERGFEQFALSPR--GRTDIRDAKSAGRLALYLGTEGEGLPES 230 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +A + + F SLN++ A + + Sbjct: 231 LLARLQT-VRITMAEGFDSLNVAAASAIALH 260 >gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 10/167 (5%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + S V +L + + N+G + R ++ L K ++ Sbjct: 99 REQAESKLPLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQ 158 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L E + +L ++ L +A L E+ F + + Sbjct: 159 EYLAWEE-APKLLECLEEL--------KDEGYRIVALETAASASDLFEK-FESEPTAFVL 208 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G ER+GL E + + + + P+ SLN+ + +E M Sbjct: 209 GNERFGLDPEVLKIIDEVRIIPLRGRKNSLNVGVTAAVAGFEWMRQW 255 >gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus hydrogenoformans Z-2901] Length = 237 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 19/163 (11%) Query: 15 PVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P+ ILV + +N+G + R+ F + + + R + +SA A + R Sbjct: 87 PLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVAR 146 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V L+ ++ A+++ + + ++ G E Sbjct: 147 CTNVAETLRYLKEKGAWVVGADAKSKASLWDTDF--------------KLPLALVIGGEN 192 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GLT+ + + +S P+ SLN S A L++ E + Sbjct: 193 VGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235 >gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 151 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 13/153 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L P + N+G R F++ +L ++ P ++A +A + + ++ Sbjct: 5 LFQPDIPHNVGACIRLSACFDV-ELHVIQPTSFNFDDRAMKRAALDYGPLSHMTRHADW- 62 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A R+R + VL AA L + +F +V ++FG+E G + A Sbjct: 63 DAFQ----------RDRAPGRLVLFTTRAAEPLTDFVFQPDDV-LLFGKESAGSPDYVHA 111 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++A I P+ P SLN+S + + + E + Sbjct: 112 AADARIYIPIRPEARSLNLSVSAGIGLHEALRQ 144 >gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 332 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 10/169 (5%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + R R + L ++ E F + ++ G E Sbjct: 232 ARVV-NLNKAIQ--------SLRERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G++ +AI P++ SLN S A + ++ ++++ Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAAKTE 330 >gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 201 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 37/195 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L + N+ + R+ F + + L ++ +PS A SSS +A ID R Sbjct: 26 TLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPSL-ANSSSGSAKKWIDLTRH-- 82 Query: 76 NLKEA---IADLH----FIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +EA I L I T TAR ++ + II Sbjct: 83 --REAGPMIQGLRGRGMQIVGTGFSPTAR------PIMDIDFT-----------RPTAII 123 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E G+ + I P+ + SLN+S A +++E M + + + Sbjct: 124 LGNEHRGMDPDVKIHVPDEIYIPMFGMVQSLNVSVAAATILYEAMRQRLAAGMYD----Q 179 Query: 185 TPATKGELLSFLDYL 199 +P E Sbjct: 180 SPLDTDEFEDVYADW 194 >gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis] Length = 236 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 28/148 (18%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IA 82 NIG + R F ++++ LV R + + ++ + + R F L++A + Sbjct: 14 HNIGTLVRTATAFGVSEVILVG-RKDFN-----AFGSHGSTLHLNFRHFYTLQQAHQYLK 67 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D +++ + + AI ++E F ++ + G E GL+++E+ + + Sbjct: 68 D-----------KDSDICGVEIADGAIAVHEHPFK-KSTAFLLGNEGTGLSSKEMEICDY 115 Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166 + + SLN++ A +++ Sbjct: 116 FVYI---SQYGCGTASLNVTVAASIVLH 140 >gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CMR15] Length = 249 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 23/179 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 +L + +GP ++LV N+G R ++ P+D + ++ Sbjct: 87 ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T + A R Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQDLYRADFKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ +A++S P+ SLN+S A + ++E + V K Sbjct: 191 PIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249 >gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus denitrificans BC] gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans BC] Length = 248 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64 + A +++L N+G R ++ P+D A + ++ A Sbjct: 93 EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGISATVAKVASGA 150 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + L E ++ T+ A ++ V Sbjct: 151 AETVPYFMVTNLARTLGELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247 >gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 268 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANA 64 ++ + ++ L Q N+G + R ++ + L PR + AR S+A A Sbjct: 109 AVEQAPLPIILALDQVQDPGNVGTLCRTLYALGGAGIIL--PRHNSAYLGPAARRSAAGA 166 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV +NL A+ D T + A + ++ Sbjct: 167 LEHLPVARV-TNLGHAL-DSAEEAGLTIYGAGGQNGPASVDAFAEPVR------LPAVLV 218 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G E GL + ++ P+ F SLN++QA +++ Sbjct: 219 LGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILL 259 >gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 225 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 11/156 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG V++L N G + RA F + LV P A +++ Sbjct: 79 KGSVVLLDRIFDPMNYGAIIRAANCFGIKT-ILVGLDRQAPITSAVCKASSG-------T 130 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +F + + ++ A + + N + A V + + + II G E G+ Sbjct: 131 IFYT--DIVGAVNTATAL-KKLQENGYTAYAADVNGKVELKDVEFAEKSIIIMGSEGKGI 187 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ I P+N SLN+SQ+ ++++E Sbjct: 188 RPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEY 223 >gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. M334] Length = 253 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N++ + + R + ++ A + R Sbjct: 105 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTATGAIEHVPIAR 164 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + + + + T ++ G + +I G E Sbjct: 165 VTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIALIIGNEG 209 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 210 KGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253 >gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 253 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 21/178 (11%) Query: 1 MTPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPS 54 M P A L++ A P +L+ N+GM+ R + + + V D Sbjct: 89 MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 148 Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + + + +A + + + E + + + + A + A Sbjct: 149 KASAGVAFHAPVL--RAQTAGHAAELLTEAGY-------------PLYALEAGAQESIYE 193 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + G E GL+ + ++ P+ SLN++ A ++ +E + + Sbjct: 194 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRT 251 >gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591] gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591] Length = 244 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 24/176 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L + P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PGLLAALATPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV +NL + L +I T A + Sbjct: 144 GAAETVPLIRV-TNLARTLRFLQEQNIWIVGTAG--------------EADHTLYQSKLT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E G+ + +IS P+ SLN+S A + ++E + V Sbjct: 189 GPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRAV 244 >gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098] Length = 196 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 21/190 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + ++L + N+ + R+ F + ++ L +P R +SA+A Sbjct: 17 LAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLYYTDTPFPVL-GRKTSASARKW 75 Query: 68 IDSVRVFS--NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++SVR L+ ++ + I ATT K + + II Sbjct: 76 VESVRHRDRQELETSLRAQNMQILATTFTP--TAKPLRTWDFT-----------RPTAII 122 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E G+ E I++++ + P+ + S N+S A +++ E + + Sbjct: 123 MGNEHSGVNEELISMADGELYIPMYGMIQSFNVSVASAIILSEACRQREAAGFYDSPRLE 182 Query: 185 TPATKGELLS 194 EL Sbjct: 183 P----DELER 188 >gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F + + L +P ++SS++ V Sbjct: 22 KNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPKLGSKSSASAKKWV--KTI 79 Query: 73 VFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + I D + + AT+ + A L F+G + II G E Sbjct: 80 YHQSANKLIRMLKEDNYKVIATSCTS------------QAQPLLSHNFTG-STAIIMGNE 126 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 G+ E L ++ + P+ + S N+S A +++ E + + N Sbjct: 127 HAGVPPELTGLVDSELYIPMYGMVQSFNVSVAAAIILAEASRQRLSAGMYNTP 179 >gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198] gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198] Length = 167 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71 I+L +P++ N G + R N L L+ P G+ + R A D + Sbjct: 4 IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ L+ A + F L K N G ++FG E G Sbjct: 62 DYYAFLES--EGLNPDNAQSPSGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I P+ S+N+S V ++V+E Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157 >gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551] gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum MolK2] gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62 +L + GP ++LV N+G R ++ P+D A + ++ Sbjct: 87 ELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T + A + Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQNLYQADFKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249 >gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626] gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626] Length = 220 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 56/209 (26%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +LV+P++ N G + R T L LV P +K+ + A +V V+ N Sbjct: 5 VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63 Query: 77 --LKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGR 127 E +AD+ + A + N +V P+ + + Q +IFG+ Sbjct: 64 NQFVEKNGLADMPNVSADDFTHDVNDGAVDKPRLHFLTKKAKKTYTQATYRDGDYLIFGK 123 Query: 128 ERWGLTNEEIAL-SNAIISFPVNPL----------------------------------- 151 E GL+ E +A ++ P+ Sbjct: 124 ESLGLSEELLAKYADECERIPMLQDSVSLVNREDWSQKHDALDGEDQYSHPVLLQQDICG 183 Query: 152 ---------FPSLNISQAVLLMVWECMEN 171 +LN+S A ++++E + Sbjct: 184 NFIDPNEFSVSALNVSNAAAIVLYEALRQ 212 >gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916] Length = 548 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 23/167 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78 N+G + R+ + L R + +A A + RV LK Sbjct: 334 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 393 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A + + E + L E G + I+ G E GL+ Sbjct: 394 DA---GYRVVGLAG-------------EGDVTLAEADLEG-PLAIVTGSEGQGLSLLTRR 436 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + +I P+ + PSLN S A + ++E + K Sbjct: 437 HCDQLIRIPLRGVTPSLNASVATAMCLYEVARRGWMKDLKGQAPSPP 483 >gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1] Length = 260 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 IL + + N+G + R + + R + +SA A +V + Sbjct: 114 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 173 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E + D +A + L + ++G++ G E G++ Sbjct: 174 SKTIEE-LKDRGMWFACA--------------DMDGELMYKCNLTGSLGLVIGNEGSGVS 218 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++S P+ SLN S A ++ +E + + Sbjct: 219 RLVKEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRM 258 >gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC 29799] Length = 284 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 29/156 (18%) Query: 27 NIGMVARAMWN--FNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE---- 79 N+G + R+ LV P P +A S I R+ + + Sbjct: 142 NVGAIFRSAAALHM---DAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEK 198 Query: 80 ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ A + +N S+ P A + I+ G E GL+ Sbjct: 199 GLSRLNALGFKTAAMALS----DNSVSIDDPALMAED---------KLAIVLGTEGDGLS 245 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + IA + + P++ SLN++ A + W+ Sbjct: 246 HTTIAHCDYTVRIPMSHGVDSLNVAAASAVAFWQLR 281 >gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614] gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614] Length = 275 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 20/173 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ S + L + N+G + R + + LV + +A ++ + Sbjct: 118 RDIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSL 177 Query: 66 CVIDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + ++ F +L + A + P A VL Sbjct: 178 FHVPLAKLGKDEFKSLAA-----TWPGTVAATHLKGSVDYRTPDYAEPVL---------- 222 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E+ GL ++ A +I P SLN++ A + ++E + Sbjct: 223 -LVMGNEQKGLEDDMAAACPTLIRIPQVGQADSLNLAVATGVALYEIRRKHLE 274 >gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 199 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + L+ S A ++ A+ V ++ +AI Sbjct: 62 PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLDAIEQ 118 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R S++ A + + + ++ G+ER GL++ ++ ++ Sbjct: 119 F----------RKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLS 168 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 169 VSIDGTGNVESLNVSVATGVLLAEWWRQ 196 >gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002] gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002] Length = 219 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 42/196 (21%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 Q + + + +L++ NI + R + + +A Sbjct: 11 QTLDRRQPDLTVLMEDVHKPHNISAIIRTCDAVGV-------------------MAVHAM 51 Query: 65 -----DCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 V+D+ + E DL A + K A L++R Sbjct: 52 NQVADGDVLDTYSQVAQGSEKWVDLNRHPDVTVAI------DQLHQQNFKIYAAHLSDRA 105 Query: 116 FS------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 Q I+ G ERWG+++ L + I P+ + SLN+S A ++++E Sbjct: 106 VDYRTIDYTQPTAILMGAERWGVSDTAAELVDGHIIIPMLGMVQSLNVSVAAAVILFEAQ 165 Query: 170 ENSIVSSEKNVKEQNT 185 + + + + Sbjct: 166 RQRLQAGFYDQPRLDP 181 >gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311] gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. CC9311] Length = 589 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 18/173 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ + L R + +A A + RV + +L+ Sbjct: 355 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 414 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + E + E + + I+ G E GL+ + Sbjct: 415 SSGYRVIGLA--------------EEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCD 460 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 +I P+ + PSLN S A L ++E + K + + T+ +L Sbjct: 461 QLIRIPLRGVTPSLNASVATALCLYEVARRGWMKGLKG-QNPSPRITRPQLAG 512 >gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis M01-240355] Length = 234 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 73 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 130 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 176 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233 >gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703] gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703] Length = 349 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V NL +A++ Sbjct: 212 PHNLGGIVRSCAHFGVNG-VLVRDASQLESGAAVRTAEGGAEHV--KAIQSDNLIDALSQ 268 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R +++ I+ G+E GL++ + Sbjct: 269 F----------RKAGYTIVTTSSHKGTALYDTQLPARTVIVLGQESDGLSDGAWQQGDMK 318 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLNIS A +++ E + Sbjct: 319 VSINGTGNVESLNISVATGILLAEWWRH 346 >gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180] gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 257 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + A +I+ T P + + + ++ Sbjct: 165 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 209 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 210 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005] gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str. Manfredo] Length = 248 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 96 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + A +I+ T P + + + ++ Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591] gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131] Length = 248 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 96 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + A +I+ T P + + + ++ Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae SCF1] Length = 243 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4] Length = 326 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCV 67 Q++ +++L + +N G + R+ + +V+ R+ P A S ++ A V Sbjct: 165 QSNRSPVILVLDEIHDPQNFGAILRSAHFLGCSA-VVVSDRNTAPLSPAVSRASVGALEV 223 Query: 68 I---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123 + D + NL E + A + + V+ V + ++ GQ + Sbjct: 224 MVANDKLMKARNLHEML----------AVSGDFGWRVVGASSGPNSVTSTKLSDGQPTIL 273 Query: 124 IFGRERWGLTNEEIALSNAIISFP---VNPL--FPSLNISQAVLLMVWECMEN 171 + G E GL ++ P + SLN+S A ++++E + + Sbjct: 274 VMGNEHRGLRKHIRQCCQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326 >gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 259 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K ++ A Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166 Query: 68 IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V + A LH + AT++ R+ + + VG +FG Sbjct: 167 LNVVEHC-TFESVHARLHVPLLATSSHARHAVFDMPL--------------NKPVGWVFG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + +++ IS P SLN++ A + ++E + Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256 >gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 269 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 33/173 (19%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + V + V N G + R LV+ A + + Sbjct: 111 SVLTGRPKLVAVCVGTNDPGNAGTIIR-----------LVD----ALGADAVIFAGDTVD 155 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------- 118 +S +V + ++ + AR R+ ++ + A + L G Sbjct: 156 -PESPKVVRSSAGSLFHVPV-----ARERDVNGAIGQLRAAGLKLAATTMGGEVSLDDPG 209 Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 Q +FG E GL ++ +A ++ +S P+ SLN+S A + +WE Sbjct: 210 NALDQPTAWLFGNEAHGLPDDVLAAADYRVSIPIKGSAESLNLSTAASICLWE 262 >gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 151 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 68/162 (41%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I+L +P++ N G + R + L LV P ++K + + +++ Sbjct: 5 IVLFEPEIPNNTGNIGRLSLASG-STLHLVKPFGFELNDKRVKRA--GLDYWQHLDLKIY 61 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ E +D F + +A+ N+ + N+ +FG+E G Sbjct: 62 DSITHFFEVHSDKKFAF-LSAKAEKNYYEIDYED--------------NMFFVFGKESVG 106 Query: 132 LTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 L + N++ P+ + SLN++ AV +++++ +++ Sbjct: 107 LPASVVEKHKNSLYKIPLFSEHIRSLNLANAVSIVIYDAIKS 148 >gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis F0421] Length = 255 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 NIG + R+ F + +V P+ SE SA A + + V ++ Sbjct: 118 PHNIGAIVRSADQFGV-DAVIV-PQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQ 175 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + ++Y A K + P Q +I G E G+ Sbjct: 176 CKKEGFWVYGADASGEPIGK-LSFP--------------QKTLLILGSEGSGIARLLKNC 220 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +++I+ P SLN+S A ++++E + Sbjct: 221 CDSLIAIPTRGKLDSLNVSVAAGILLYEIRRS 252 >gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3] gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3] Length = 228 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 72/181 (39%), Gaps = 17/181 (9%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 M+P + N + + +L++ N+ + R + + R+ ++ Sbjct: 1 MSPERFARITNMLNHRQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVH--ATRETKTTK 58 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ + + + N+++AIA R + + AI E + Sbjct: 59 VCGVTATGSQNWV-KIHTHENIEDAIA--------ALRAQGMQIIATNLSDTAIDFRE-V 108 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G+E+ G++ + +AL++ + P+ + SLN+S A L+++E + Sbjct: 109 DYTKPTAILMGQEKTGISAQALALADQDVIIPMLGMCQSLNVSVASALILYEAQRQRENA 168 Query: 176 S 176 Sbjct: 169 G 169 >gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08] Length = 271 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L + +I + N G V R F + L + K SS + Sbjct: 112 KLPDEDVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 171 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGI 123 + + L +A+ H R SVLA L+ SG+ + Sbjct: 172 HLPVIVGVE-LADAVEWAH--------QREM--SVLAADGGGHSLDAVARSGRLKRPIAW 220 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E WGL + AL++ ++ P+ SLN+S A ++++ Sbjct: 221 LMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLY 263 >gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 156 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + V++ + Sbjct: 6 IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQIHKD 64 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 EA+ ++A T F V + +V ++FG E GL Sbjct: 65 FDACMEALPG-ARVFAFTTHTDKWFTDV-------------EYQDGDV-LLFGTEPTGLP 109 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +E + + P+ P S+N+S + V+E Sbjct: 110 DEHVNHPRITDQVRIPMVPARRSMNLSNSASTAVFEAWRQ 149 >gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 262 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + Q NIG + R+ F++ + L + K S+ + + + Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAI L T + + ++ L E Q ++ G E G+++ Sbjct: 176 TEEAITLLQ-KGGFTVYSAELS-------DRSVKLGEEKLP-QKTAVVIGNEGNGVSDTV 226 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + P++ SLN S A ++ WE + Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259 >gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 262 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + Q NIG + R+ F++ + L + K S+ + + + Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +EAI L T + + ++ L E Q ++ G E G+++ Sbjct: 176 TEEAITLLQ-KGGFTVYSAELS-------DRSVKLGEEKLP-QKTAVVIGNEGNGVSDTV 226 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + P++ SLN S A ++ WE + Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259 >gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 179 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Query: 4 YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A +L+ S K PV ++L + + N+G + R + ++ L P ++ ++ Sbjct: 15 SAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEIDKTAL 74 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A V+ L +AI L + L E + + + + Sbjct: 75 GAQDVVKWEYSADPL-DAIDRL--------KAEGVRICGLEIAENSRLYTAIVKEEFPIC 125 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G+ +E ++ ++++ P + SLN++ A + ++E + Sbjct: 126 LVVGNEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173 >gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815] gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815] Length = 266 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 20/178 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 L ++L Q N+G + R+ + P + S K S+ A Sbjct: 106 PLPERVTHGCVVLDGVQDAGNVGSILRSAAAAGIGH-VFCAPGTAYAWSSKVLRSAMGAH 164 Query: 66 CVIDSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ ++ +++ I L A T V Sbjct: 165 FLL---QIHEDIEAPTLIQLLDVPVAIT-------------DSHGAEAIYETDLSGPVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG E G++ ++ P SLN++ A + ++E + + Sbjct: 209 VFGNEGAGVSQPWRDAVTYRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRGKGARTAR 266 >gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 237 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 30/163 (18%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + N+G + R+ F + + L R + +S A I + S+ + Sbjct: 94 LDRIEDPHNLGAIFRSADAFGVAGIVLPKDRSATITNTVVKASTGAVFYIPFS-IVSSFR 152 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGRER 129 A+ KEA L G+++ G++ G E Sbjct: 153 LALKKF--------------------KEAGGWLIGLESGGKSISNYSFPFPLGLVAGSEG 192 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + L + ++ P+ SLN+S AV + ++ + Sbjct: 193 KGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQ 235 >gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198] gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198] Length = 251 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 23/152 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFSN 76 IL NIG + R+ + + + L R G+ E +S A ++ V N Sbjct: 109 ILHGITDTGNIGSIFRSAYCLGVDGIVLCGVR-GFSIEGVLRTSVGA--ILQMPFCVVEN 165 Query: 77 LKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + I +L AR RI Q + G E GL Sbjct: 166 ILDVIHELKNEKTLCLGADARGEEEG---------------RIAGVQKWALFLGSENTGL 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ ++ + I++ ++ F SLN+ A ++ Sbjct: 211 PSQVLSKLDRILAIKMHRGFNSLNVGVAAGIL 242 >gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLFQSKMTG-RMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49] Length = 179 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 10/161 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + +IIL + + NIG V R F + ++ L P + + ++ A + Sbjct: 23 TKTPLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAW 82 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRER 129 N ++ I + +N + E ++ L + + + ++FG E Sbjct: 83 -EHVENTEDLI--------VSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEV 133 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+ + S+ +I P SLNIS + ++VW+ + Sbjct: 134 KGVQQTVVTESDVVIEIPQYGTKHSLNISVSTGVVVWDFFK 174 >gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602] Length = 367 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 12/150 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ +F + + + +P R++ A+ V N E + Sbjct: 230 PHNLGGIMRSCAHFGINGMMVQDPAQLESGAAVRTAEGGAEHV--KAISADNFLEVLETF 287 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ + + ++ G E GL++ + + Sbjct: 288 ----------RKAGYTIVTTSSHKGTALGKAQLPAKMVLVLGEESDGLSDSAWQQGDLSV 337 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174 S SLN+S A +++ E + Sbjct: 338 SIGGTGKVESLNVSVASGILLAEWWRQNQA 367 >gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498] gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C] Length = 158 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GMDYLERASLERH 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L D T R + +L A I+ +N ++FGRE G+ + Sbjct: 62 L-----DWQSFIDTMQR---FNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ P+ P SLN++ +V ++ E + Sbjct: 114 YKAADYALTIPMLPHARSLNLAISVAMVTGEALRQ 148 >gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis] Length = 186 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 32/153 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R++ ++ V + K S++ A I V+ ++ Sbjct: 60 KDPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSASGAHFYIP---VYEDI----- 111 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI----A 138 + L F + ++ G ER GL+ + + Sbjct: 112 --------------------SWNRMLDYLPHDFFRDTEIVLVVGSERTGLSEQALRFGEQ 151 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ LN + A L+ +E + Sbjct: 152 HAGKRLHIPMTNDKFCLNSAVAATLIAFEIRKQ 184 >gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 271 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q G ++ + N+G + R + + +P W + S Sbjct: 118 QPDGPGLYVVAEHLEKPGNLGAILRTADAAGVDAVIAADPVTDWGNPNVVRGSKG----- 172 Query: 69 DSVRVFSNLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 VF ++ A A L F+ R P VL+ ++ V I Sbjct: 173 ---TVF-SVPVATAPTPEVLDFLAG-----RGMTLVATTP--HTEVLHTQVDLTGPVAIA 221 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E+ GLT + + + P+ SLN++ + ++V+E + + Sbjct: 222 VGAEKTGLTASALEGATHRVRIPMVGRANSLNVATSAAIVVYEAVRQRL 270 >gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b] gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b] Length = 244 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 16/172 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLESIENPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R V EA L + + Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEYQIWIVGTAGEADHTLYQSKLPAA-LA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRQA 244 >gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818] gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 27/162 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+LV+PQ+ +N G + R + + L L++P +K + +++V+ Sbjct: 6 IVLVEPQIPQNTGNIGRLCVATD-SILHLIHPLGFSVEQKELKRA--GLDYWQNLQVYEW 62 Query: 76 -NLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 NLKE I + HF ++T A L + Q + FGRE Sbjct: 63 QNLKEFWEKHPINERHFFFST----------------KAKKLYYQADFSQGGFLYFGRED 106 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + +A S P+ S+N++ +V ++E + Sbjct: 107 RGLDSS-LAESARAYRLPMVKGIRSVNLATSVGAALYEGLRQ 147 >gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO] gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae TMO] Length = 233 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 19/166 (11%) Query: 9 QNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + G I+L VDP N+G + R ++ + + R + SA Sbjct: 77 ETYLDGDFIVLLDHIVDP---HNLGAIIRTCVGAGVSAIVITKDRSAKITPAVVKVSAGT 133 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I V + +N I T + +N V L E F V I+ Sbjct: 134 VFRIP-VVIVTN----------IVYTIEKLKNKGYWVYGADMNGKNLYEEGFI-SPVAIV 181 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E GL+ + +IS P+ SLN+S + ++++E Sbjct: 182 FGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISR 227 >gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC 484] Length = 335 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 20/169 (11%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVID 69 V+ L N+G V R+ F LV P R + A SA A + Sbjct: 182 RPALVVALDGVTDPRNLGAVLRSAGAFGAHG-VLV-PERRAAGVTASAWKVSAGAAARVP 239 Query: 70 SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV L+ F+ + + E F+ + ++ G Sbjct: 240 VARVTNLVRTLQAYKEAGVFVVGLDGGGDQS-------------VAELAFAEDPLVLVVG 286 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E GL+ +AI S P+ SLN A + ++E + Sbjct: 287 SEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEVARRRGEA 335 >gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091] Length = 250 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 17/161 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G + L Q N+G + R + L+ +EK S+ +A + ++ + Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSA---LCNIPI 173 Query: 74 FS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F L E + T + N K I + II G E Sbjct: 174 FEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHT-----------ISYPKRTMIILGNEGN 222 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G++ E I + + I+ P+ SLN+S A L +++ E Sbjct: 223 GVSREIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQ 263 >gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 17/161 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G + L Q N+G + R + L+ +EK S+ +A + ++ + Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSA---LCNIPI 173 Query: 74 FS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F L E + T + N K I + II G E Sbjct: 174 FEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHT-----------ISYPKRTMIILGNEGN 222 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G++ E I + + I+ P+ SLN+S A L +++ E Sbjct: 223 GVSREIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQ 263 >gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017] Length = 153 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 20/161 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71 ++LV P++ N G +AR T+L LV P G+ A D + + Sbjct: 3 RVVLVYPEIPPNTGNIARTCAAT-QTELHLVEPL-GFEISNRYLKRAGLDYWPFVKLQTH 60 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ ++ R + +SV K + + ++ +IFG E G Sbjct: 61 ASWAAFEQV------------RQQQGGRSVSFSK-SGTHSYLQFQFCEDDWLIFGSESSG 107 Query: 132 LTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 L + + S+A++ P+ + SLN+S + + ++E Sbjct: 108 LPPDILQDSSAVLRIPMAHEQVRSLNLSVSAAVGLFEARRQ 148 >gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC 25986] Length = 302 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 21/170 (12%) Query: 8 LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L + GP V++L N G + R+ + + N R + + +SA A Sbjct: 139 LDRAGDGPALVVVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAV 198 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +V N+ A+ DL ++ + R + AP E V Sbjct: 199 MHLPIAQV-PNIARALDDLKAAGFWVSGASERAEGSCWD--APFE------------GRV 243 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E G++ + + + P + SLN++QA + +E + Sbjct: 244 ALVMGSEGDGISRLVLEKCDFLTKLPQRGMTESLNVAQATTALCFEWLRR 293 >gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 177 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 16/161 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++L + + N+G + R F + Q+ L P+ + ++ A ++ + Sbjct: 24 PVAVVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPPNREIEKTALGATQSVNW-KH 82 Query: 74 FSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + +AI D + I A + ++L E G+ +IFG E Sbjct: 83 YPSTLDAIHQLRVDGYLIIA---IEQAVDSTMLNQFEP--------IPGEKYALIFGNEV 131 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+ +E + + I P S NI + +++W+ Sbjct: 132 NGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILWDFFS 172 >gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 SA+ I L +N+G V R+ F + + L R + A SA A + Sbjct: 172 SARPLFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRSASVNAAAWKVSAGAAAHMPI 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + R + L + ++ E F + ++ G E Sbjct: 232 ARVV-NLTKAIE--------ALKERGYYSIGLD-GGGSKLVGETGFETDPLVVVLGSEGK 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ +AI S P+ SLN S A + ++ Sbjct: 282 GLSRLTREACDAIASIPITSAVESLNASVAAGIALY 317 >gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 261 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 13/154 (8%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G + R + L + K +SA + I ++ V Sbjct: 114 VEISEPGNAGTLIRIADAMGAAAVILAGHSVDPYNGKCLRASAGS---IFNIPVV----- 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137 A+AD H R VLA + G +FG E GL+ E Sbjct: 166 AVADTHAAI---VSLRGAGLQVLATAVDGETSLDDADPLLGVATAWLFGPESHGLSAEIA 222 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P++ SLNI+ A + +++ Sbjct: 223 GAADHRVRIPMSGRAESLNIAAAAAICLYQSARA 256 >gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Achromobacter xylosoxidans A8] Length = 245 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 65/171 (38%), Gaps = 19/171 (11%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ + +GP ++IL N+G R + ++ PRD + + + Sbjct: 87 EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + V + A T R+ ++ ++ + A +I + Q + Sbjct: 145 GAADTVPYLMVTN------------LARTMRSLKDRGVWLVGTDDQATDSMHQIDARQPM 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243 >gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1] Length = 255 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 197 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254 >gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Neisseria meningitidis 8013] Length = 250 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249 >gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1] Length = 247 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + + + R + +S A I RV + Sbjct: 100 LDELEDPHNLGSIMRTADASGVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQ 159 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + E ++ T A+ ++++ R+ + ++ G E G+ Sbjct: 160 TIDELKERGVWVAGTDAKGADDYR--------------RLDGTLPICLVIGSEGKGIGRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A ++++E Sbjct: 206 IRDKCDFLIKMPMVGHVTSLNASVAASILMYEVYR 240 >gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 257 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69 +GPV+IL Q N+G + R + L++ RD P + SA A I Sbjct: 105 PNEGPVLILDRIQDPGNLGNLLRTAECMGVKH-VLMSDRDTSPITPVVEKVSAGAIHHI- 162 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +NLK + F+ +N + + +E + E + + +I G E Sbjct: 163 QIYRVANLK---HGIDFL------KKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEG 213 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G+ + ++ + P+ SLN+ A + + Sbjct: 214 EGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 249 >gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis MCLD] Length = 175 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L P++ N G + R+ + N +L ++ P + A + D + S Sbjct: 4 IVLYQPEISPNTGNIIRSCFATN-AKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHS 62 Query: 76 NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 N E + YAT + +FK + + +++ ++FG E Sbjct: 63 NYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRD-------------NNEDIFLMFGTE 109 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ ++ N + P+ SLN++ +V+++++E + Sbjct: 110 STGIPKSILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQ 153 >gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis HUB-1] gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma hyorhinis HUB-1] Length = 175 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L P++ N G + R+ + N +L ++ P + A + D + S Sbjct: 4 IVLYQPEISPNTGNIIRSCFATN-AKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHS 62 Query: 76 NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 N E + YAT + +FK + + +++ ++FG E Sbjct: 63 NYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRD-------------NNEDIFLMFGTE 109 Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ ++ N + P+ SLN++ +V+++++E + Sbjct: 110 STGIPKSILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQ 153 >gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 178 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 19/149 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N+G + R + ++ + P ++ ++ A + R F++ EA+ Sbjct: 40 NVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPW-RHFADPLEALSVLKG 98 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ++ + S L P + +VL + G E G+ +E +A + Sbjct: 99 EGCK-VFGLEIAENSRSYSSLQPDDYPLVL------------LVGNEVDGIGDELLARCD 145 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P SLN+S A + ++EC+ Sbjct: 146 GVLEIPQYGTKHSLNVSVAAGVALFECVR 174 >gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 233 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69 +GPV+IL Q N+G + R + L++ RD P + SA A I Sbjct: 81 PNEGPVLILDRIQDPGNLGNLLRTAECMGVKH-VLMSDRDTSPITPVVEKVSAGAIHHI- 138 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +NLK + F+ +N + + +E + E + + +I G E Sbjct: 139 QIYRVANLK---HGIDFL------KKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEG 189 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G+ + ++ + P+ SLN+ A + + Sbjct: 190 EGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225 >gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 251 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 14/167 (8%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68 AK +++L + N+G R+ + Q +V PR + A ++ A + Sbjct: 97 PAKPLLLVLENVTDPHNLGACLRSADAAGV-QAVIV-PRRNAAGLTPVACRTAVGAAESL 154 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + NL + L R+R V E + +++ ++ G E Sbjct: 155 AYYEI-GNLASLLDQL--------RDRGV-WVVGTALEERSESLFTFQAPESLAVVMGAE 204 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 GL + ++ P+ SLN+S A +M+++ V Sbjct: 205 GSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQRSVE 251 >gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM 271] gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM 271] Length = 181 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 24/173 (13%) Query: 6 PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + K PV IIL + + N+G + R + ++ + P ++ ++ A Sbjct: 18 EEYNAAEKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGA 77 Query: 65 DCVIDS------VRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + + V +KE IA T +R + P Sbjct: 78 QETMAWEYFAHPLEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFP------------- 124 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I G E G+ ++ + + I+ P SLN+S A + ++E + Sbjct: 125 ---LCLILGNEVQGIDDDILEQCDHILEIPQFGTKHSLNVSVAAGVALFEMVR 174 >gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032] gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter turicensis z3032] Length = 257 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ +F + +V S A ++ ++ + + +A+A Sbjct: 120 PHNLGAIVRSCAHFGVKG-VVVQDASLLESGAAVRTAEGGAEHVEPIT-GDSFSDALAQF 177 Query: 85 H---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + TT+ ++ P A + + + ++ G+E G++ A ++ Sbjct: 178 RAAGYAIVTTSSHKG------TPLFKATL-------PKKMVLVLGQESEGISEATQANAD 224 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 225 LSLSIDGTGNVESLNVSVATGVLLAEWWRQ 254 >gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxidans DMS010] gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga thiooxydans DMS010] Length = 246 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 29/177 (16%) Query: 6 PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61 L S P + IL Q N+G R ++ P+D + A S Sbjct: 87 MTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGAH--AVIAPKDRASGLTATAVKIS 144 Query: 62 ANADCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + A + +V + L++A ++ T+ ++ + L + Sbjct: 145 SGAAERVPFAQVTNLSRLMRELQDA---GVWLVGTSG-------------DSELSLFQAE 188 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G ++ I+ G E G+ + ++ P+ SLN+S A + ++E Sbjct: 189 LKG-SMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYRQR 244 >gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 285 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 12/153 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V N G + R + K +SA + I R N+K+ Sbjct: 143 VLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVAR-DPNIKD 201 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + R++ VLA V Q +FG E GL E + Sbjct: 202 VL----------GKLRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDE 250 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN++ A + ++E ++ Sbjct: 251 ADMRVRIPILGRAESLNLATAASICLYESVKQQ 283 >gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19] gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1] gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11] gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291] gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae FA19] gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11] Length = 250 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 292 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G V RA + V+ + K S+A + + + + E Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199 Query: 82 ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 D + +Y T R P+ VL ++ ++FG E GL + Sbjct: 200 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKTVLFGNEARGLEPD 250 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+S P+ SLN+ + +M+ Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280 >gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU, predicted [Rhodopirellula baltica WH47] Length = 156 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 23/168 (13%) Query: 12 AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--- 67 + P ++L P++ +N G + R +L +V P EK + D Sbjct: 1 MQPPAHVVLYQPEIPQNTGNIGRTCVAVG-AKLWIVEPASFQFDEKRLRRA-GLDYWQYL 58 Query: 68 -IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V + L E + F + + + R V G ++FG Sbjct: 59 DWEPVPSWDVLCERLNPERFFFFSKSAKRT-------------VWEAEFALGD--VLVFG 103 Query: 127 RERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 RE GL + + + P+ SLN+S + ++E +I Sbjct: 104 RETSGLPASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTI 151 >gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4] gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1] gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169] gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1] gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1] gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1] gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8] gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7] gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72] gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1] gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E] Length = 290 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R + + L + + S A VI + V + Sbjct: 134 VLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPITPTVAKVSVGASEVIPVISVTNLA 193 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L++ FI+ T KS E G V II G E G+ Sbjct: 194 RTLEKMKKSGVFIFGTA-----LDKSAKPAFECDF--------GGKVAIIMGSEGDGMRR 240 Query: 135 EEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMENS 172 + + ++ P+ + SLN+S A ++++E M Sbjct: 241 LTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281 >gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp. R2A62] Length = 260 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 15/167 (8%) Query: 8 LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + P ++L+ N+G V R+ F + + ++ + +++ A Sbjct: 103 LGEEGRAPRVVLLDRVTDPHNVGAVLRSAEVFGASAVVAMSRHAAPETGALAKTASGALE 162 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGI 123 VRV NL +A+ + VL A G+ V + Sbjct: 163 RQPYVRV-RNLADAME----------TLKGMGYIVLGLDGEAEGTIGAALEGKRDRPVAL 211 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + G E GL + +A++ F SLN+S A + ++ E Sbjct: 212 VLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNAAAVALYASRE 258 >gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno] gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno] Length = 220 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R F + Q + R G + + A +D V +++ + I Sbjct: 43 HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVD-VFRYNDTQSCID--- 96 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T R + P + A LN+ + + FG E+ GL+ + ++ ++ + Sbjct: 97 -----TLRTQGYQIVATTPHKNAYFLNDFDIT-KKSAFFFGTEKEGLSAQVLSQADTFLK 150 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS AV +++ Sbjct: 151 IPMVGFTESLNISVAVAIVL 170 >gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 251 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 21/166 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ L ++ P+D + R + A VI V V + Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + + ++ +G + +I G E G+ Sbjct: 158 LARTLEKLQQRGLWVVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P+ SLN+S A + ++E ++ Sbjct: 204 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQRGAKAKT 249 >gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 22/173 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVI----DSVRVFSNLKE 79 N + R + V P+ G P+ A S SA+ + D+V L+ Sbjct: 30 PHNFSAILRTCDAVGVLTAHAVPPKSGVLPTFDATSGSAHKWVAVQRQPDAVTAVRQLQA 89 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A + + AT R+ P + ++ G E+WG+++E + Sbjct: 90 A--GMQ-VLATHLSQRSLD--YREPDYT-----------RPTCVLLGAEKWGVSDEAAEI 133 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 ++A I P+ + SLN+S A +++E + + + + PA L Sbjct: 134 ADANIVIPMFGMVQSLNVSVAAATILFEAQRQRLSAGMYDTPQL-APAELDRL 185 >gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 269 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 25/168 (14%) Query: 17 IILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+LV P+ NIG + R N+ + + NP+ + +S + Sbjct: 118 ILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRASVGCVFTVPIA--V 175 Query: 75 SNLKEAI-----ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + E I D + + A +A K E F+ +N I+ G E Sbjct: 176 GSTTEVIDYLKKKDFNIYCAALSA-----SKPYY----------EVPFAEKNTAIVVGTE 220 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT E + S I P+ + S+N+S A ++++E + + + Sbjct: 221 DEGLTQEWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKKMRLTAK 268 >gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] Length = 260 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 27/173 (15%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L A +++L + N+G + R + L+ R P ++ Sbjct: 108 PTLPPQA--LLVVLHGLEKPGNVGAILRTVDGVG-ADGVLILGRGADPYSPNVIRASQGS 164 Query: 66 CV------IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 D + L+E + T R +++ L Sbjct: 165 VFTVPLRQQDEAEALAWLEE--EGFTLVACTPDAPRTFWQADLT---------------G 207 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E GL E + +S P+ SLN++ A ++++E + Sbjct: 208 RVALLLGTEHEGLP-EHWRRHESAVSIPMRGQADSLNVATAAAVVLYEALRQR 259 >gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C300] Length = 253 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 99 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + T ++ G + + Sbjct: 159 HVPIARVTNLSQTLDKLKDQGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253 >gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica KT99] Length = 251 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 27/164 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69 IL N+G R + +V PRD + + A V+ + Sbjct: 106 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 163 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +L++ + +I A + ++ I G E Sbjct: 164 LARTMKSLQD--KGI-WIVGAAG--------------EAEQDLYKADLKGSLAIAMGSED 206 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL ++++S P+ SLN+S A + ++E + + Sbjct: 207 KGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGVCLFEAVRQRL 250 >gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991] Length = 241 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 12/161 (7%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K P+ + L + + N+G + R + + + R + S A + Sbjct: 89 KTPLFVMLDELEDPHNLGAILRTCDCVGVDGVIIGKHRGVKLTPTVAKVSTGAIDTVKVA 148 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V +NL + + L + F V + + ++ G E +G Sbjct: 149 -VVTNLAQTLKGL---------KKEGFW-VAGADFDNSQDYRQASYDMPLVLVVGSEGFG 197 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + + P+ SLN S A +++++ Sbjct: 198 ISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQR 238 >gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032] gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032] Length = 267 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 16/148 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83 N+G + RA+ + L++P P ++ S + ++ + + D Sbjct: 128 NLGAIFRAVAALGV-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYAKLDPWPTALAQVRD 186 Query: 84 LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F + A T L P + A ++ G E GLT +A S+ Sbjct: 187 AGFTVLAMTPAPDAVPIQRLTPAQRA-----------RAALLLGAEGAGLTQAAMAASDV 235 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 + P+ SLN++ A + WE Sbjct: 236 RVVIPMRRGVDSLNVAAATAVACWELGR 263 >gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 185 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71 I+L +P++ +N G +AR N L L+ P +K + + + Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFHLDDKHLKRAVLDYGGEV---EI 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129 R +L+ + A +N + L K A + ++ +FGRE Sbjct: 59 RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL + ++ + P++ + N+S + ++++E + + Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168 Query: 189 KGE 191 K + Sbjct: 169 KDD 171 >gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella violacea DSS12] gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella violacea DSS12] Length = 251 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 27/175 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANA 64 +++N+ ++IL N+G R + +V PRD + + A Sbjct: 95 EVENTETPFLLILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGA 152 Query: 65 DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V+ + R +L++ +I A + Sbjct: 153 AEVVPLFQVTNLARTMKSLQDK---GVWIVGAAG--------------EAEHNLYKADLK 195 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ I G E GL ++++S P+ SLN+S A + ++E + + Sbjct: 196 GSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGVCLFEAVRQRL 250 >gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] Length = 157 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 39/170 (22%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N G + R N T+L L+ P +K + V++F Sbjct: 7 IVLLNPEIHVNTGNIGRTCVLTN---TKLHLIKPLGFELDDKKIRRA--GLDYWKDVKLF 61 Query: 75 ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 N++ + +ATT + + N I+ Sbjct: 62 VWENWEHFWRENIEN--GNAKIYFATTKTKQRYT---------------DVKFNDNDYIM 104 Query: 125 FGRERWGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FG E G+ E + SN I+ P+ PL SLN+S AV ++++E + Sbjct: 105 FGPESRGIPEEILNRYKESN--ITIPMLPLGRSLNLSNAVAIVLFEALRQ 152 >gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000] gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251 2'-o-methyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 23/179 (12%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62 +L + +GP ++LV N+G R ++ P+D + ++ Sbjct: 87 ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T + A R Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQDLYRADFKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ + ++S P+ SLN+S A + ++E + V K Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249 >gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] Length = 249 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 23/154 (14%) Query: 24 LGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDSVRVFSNL 77 N V R+ L + +V P G AR S + S L Sbjct: 48 HPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLHRYRDPRMA--VSRL 105 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +E + + I ATT P ++E + FG E GL++ + Sbjct: 106 RE---EGYRIIATT--------PHRTP----TPVDEFDVTRGKCAFFFGGELPGLSDAVL 150 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ P+ SLNIS +++ ++ Sbjct: 151 EAADEYLTIPMYGFVESLNISVTAGIVLHNVVQR 184 >gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 14/151 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV P++ N G + R NL +L L+ P EK+ + V + Sbjct: 8 IVLVTPEIPWNTGAIGRTCVALNL-ELILIKPLGFSLDEKSVRRA--GTDYWKHVNL--T 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + ++ AR + + +E + ++FG E GL Sbjct: 63 LYD-----DWVAFIEARKPTRDQ-LYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSL 116 Query: 137 IA-LSNAIISFPV-NPLFPSLNISQ-AVLLM 164 + L + + P+ + SLN++ A ++ Sbjct: 117 LDGLEDRVFHLPMLSDKVRSLNLANVATAVI 147 >gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 248 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73 ++IL + Q N G R+ + + + + P+D + + + A + V Sbjct: 99 ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155 Query: 74 FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +NL AI L +I ++ S+ +V I+ G E Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEANDSLYSMNLAD--------------SVAIVAGAEG 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A + + P+ SLN+S A + ++E + Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244 >gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3] Length = 260 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K S Sbjct: 103 PTHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160 Query: 62 ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ + +++ EA+A+ V Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16] Length = 263 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L + + N+G + R + + R ++ +S A I VRV + Sbjct: 117 VLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLA 176 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E + T A +++ + ++ G E G++ Sbjct: 177 RTMDELKKQGLWFAGTDAAAEGDYR--------------EADYNLPLCLVIGSEGKGISR 222 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++S P+ SLN S A L+++E Sbjct: 223 LIKEKCDFLVSIPMKGRVTSLNASVAASLLMYEVFH 258 >gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter xylosoxidans C54] Length = 245 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ + +GP ++IL N+G R + ++ PRD + + + Sbjct: 87 EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNSTVQRVAC 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + V + A T R+ ++ ++ + A RI + Q + Sbjct: 145 GAADTVPYLMVTN------------LARTMRSLKDRGVWLVGTDDQATDSMHRIDARQPM 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245 >gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans BC] gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans K601] gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans BC] gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans K601] Length = 258 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 29/170 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L A+ P ++L Q N+G + R+ F Q+ + S K + Sbjct: 105 PAQQAL--DAQSPTVVLDRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGM 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + R+ L + D+ + AT++ + P Sbjct: 163 GAHFAL---RLVEGLD--VQDIDRLRVPLLATSSHQGDWLHRAQLPW------------- 204 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G I G E G++ + ++ I P SLN+ A + + Sbjct: 205 -PCGWIMGHEGQGVSPDLQRRASRHIRIVQPGGEE--SLNVGAAAAICLH 251 >gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter sanguinis PC909] gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1] gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter sanguinis PC909] gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1] Length = 173 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 23/165 (13%) Query: 16 VIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSV 71 I LV +P++ +N G + R ++ +L L+ P EK+ + A+ V +D V Sbjct: 2 AIHLVQFNPEIPQNTGNIMRTCAATDI-KLHLIKPMGFTLDEKSIKRA-GANYVNEVDYV 59 Query: 72 RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V+ N E + F + T R K+ + ++ I+ G E Sbjct: 60 -VYENWDEFVEKNKGGKFCFCT----RYGQKNHTEMDFSNPE--------EDYYIVLGAE 106 Query: 129 RWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ E + P+ SLN+S ++ +E + Sbjct: 107 SCGIPKEILRPYFENCFRIPMTNKVRSLNVSNVAAILAYEALRQQ 151 >gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii TW07627] Length = 243 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + AR + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTN-- 156 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + +G + ++ G E G+ Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALVMGAEGEGMRRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera] Length = 205 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 56/183 (30%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV PQ+ N G +AR +S+ + + + Sbjct: 66 VVLVSPQIPGNTGTIARTCA----------------------ASAVGLHLIEEGEK---- 99 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A T R L IFG E GL E Sbjct: 100 ---------RLLAFT--KRGTNIHSDFSYRKGDWL------------IFGSETCGLPPEA 136 Query: 137 IALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 + I P+ + LN+S +V + ++E + + +T ++K Sbjct: 137 LLDCKSEALGGGTIQIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPSTDSSK 196 Query: 190 GEL 192 L Sbjct: 197 SFL 199 >gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis F0359] Length = 271 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 25/173 (14%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62 P++ N P++ L Q N+G + R A N L +P + K S+ Sbjct: 112 PEVANER--PILYLEAIQDPGNLGTILRTAAAANVGAVFL---SPDCVDLYNGKTVRSAM 166 Query: 63 NA---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A V+ +V +L+ A + + A L ++ Q Sbjct: 167 GAIFKVPVVQNV----SLERISAFCD----------EKKRILTGTLLGANKLYTQVDWRQ 212 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I FG E GL+ ++ P+ SLN++ +V +++++ E + Sbjct: 213 PTVIAFGNEGNGLSQACAEACRQALTIPMKSHTESLNLATSVAVVLYKAWEEA 265 >gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX] gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX] Length = 275 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 V++L + N G V R+ + + + K +SA + + Sbjct: 112 DRPRLVVVLSHVRDPGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLP- 170 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFG 126 V V ++E T R+ ++LA + V IFG Sbjct: 171 VVVGVRIEEV----------TGFLRDAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFG 220 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E WGL E +AL++ +S P+ SLN++ A + ++ Sbjct: 221 NEAWGLPQETLALADETVSVPIYGRAESLNLATAAAVCLY 260 >gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella equigenitalis MCE9] Length = 245 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 + + P + IL N+G R + ++ P+D + + + Sbjct: 87 DVLDVINEPALLLILDGVTDPHNLGACLRTADAAGVH--AVIAPKDRSVGLNSTVQRVAC 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+ +I TT +A I + Sbjct: 145 GAADTVPYIMVTNLARTLRSLKERGIWIIGTT--------------DATEKSVYDIDAKL 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 191 PTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLRQR 243 >gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 237 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 25/203 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N V R F + + +V R + + +AD + ++R ++ AI DL Sbjct: 59 PHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTR--HADKWL-TLRQQPDIVTAIQDL 115 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A+ + S L E I L + I Q ++FG E G++ E I +++A Sbjct: 116 Q------AKGYRVYASYLG--EGTIRLCD-IDVSQPTALLFGNEHSGVSQEAIRVADATF 166 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE-ISL 203 P+ S NIS A L +++ E + + + + E + +L Sbjct: 167 MIPMYGFVQSFNISVAAALALYDVTERARRQAG-----ERYYLSFQEKKELYEKWMWQTL 221 Query: 204 EERGYFRPVEKKKKMLDDLYSIF 226 +++M L F Sbjct: 222 -------NPRTRERMKARLGRSF 237 >gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 155 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 32/166 (19%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I+L++P+ N G + R N ++L LV P +K S D V Sbjct: 4 IVLLEPEKPSNTGNIGRTCVLTN---SRLHLVRPFSFRLDDKLLKRS--GMDYWDKVDLV 58 Query: 73 VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + ++ E + D F T A N + +FG+ Sbjct: 59 IHDDMDEFLEYIKGNDRVFYVETFATNYYHELEYQD----------------GDFFVFGK 102 Query: 128 ERWGLTNEEIA-LSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171 E G+ + + + I P+N + SLN++ + ++++E + Sbjct: 103 ESSGIDKDLVDKHKDHSIKIPMNMTIDRSLNLANSCNIVLFEALRQ 148 >gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC BAA-286] Length = 263 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ S +IIL + N+G + R + + +P + A SS Sbjct: 108 DLQLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSVGCLF 167 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + V S+ ++A+ L R+ A + A + I+ G Sbjct: 168 TVKTA-VCSS-RDALDFL----------RHKKIKSFAAELQASQWYQDTDFSIPSAIVMG 215 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GLT+ + ++A I P+ SLN+S + ++ +E M Sbjct: 216 TEADGLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQR 261 >gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L] gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L] Length = 259 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 17/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNL-KE 79 Q N+G + R L L + + K +S + L + Sbjct: 120 QDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHLPTLVAQ 179 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A A + AT A V I I+ G E GL + + Sbjct: 180 AQAQGIQVVAT--------------VPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKT 225 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ ++ P+ P SLN++ A LM++E Sbjct: 226 ADQQVNIPLMPGVESLNVAIAAALMLYEAKRQR 258 >gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella rochalimae ATCC BAA-1498] Length = 280 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 33/169 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 I L + N+G + R + + L+ S + ++ + Sbjct: 128 IALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ F I T + +++++ F + ++ Sbjct: 188 TFLNWSTHFK---------GIIVGTHLKGSVDYRTID-------------FKNGPIILLM 225 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E+ GL++ + + + P SLN++ A +M++E + + Sbjct: 226 GNEQQGLSDVLVNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274 >gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae F62] Length = 250 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 16/150 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA---IA 82 N+G + R++ LV+PR P ++ S + R+ EA + Sbjct: 132 NVGAIFRSVAGLG-ADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRI-PEWDEAAPLLR 189 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A EA + + + V ++ G E GL+ E+A ++ Sbjct: 190 DAGFEIAALA----------LADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADR 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++ P+ SLN++ A + +W S Sbjct: 240 VVAIPMLHGVDSLNVASASAVALWALRVRS 269 >gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 268 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 16/150 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R L L++ S +A ++ A I + R L Sbjct: 129 PGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWEDFLVWLRQ 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + T+ R + P+ ++ G E GL + + Sbjct: 189 GEGDLIGTSLRA---TQDYQEPRYQTP-----------SFVLVGNEAQGLPDSYEDACDH 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN++ A +M +E + Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQ 264 >gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC 25996] Length = 249 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 22/176 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G+ + ++S P+ S+N+S + +++ E ++ +E Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAE 248 >gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM 266] Length = 180 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 9/144 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R + ++ L P ++ ++ A + + EAIA Sbjct: 40 NVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRW-EYCESALEAIA---- 94 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 T + R L E + + + +I G E G+ +E + + +I Sbjct: 95 ----TLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRECDEVIEI 150 Query: 147 PVNPLFPSLNISQAVLLMVWECME 170 P SLN++ A + ++E + Sbjct: 151 PQYGAKHSLNVAVAAGVSLFEFIR 174 >gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 243 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM 18170] Length = 268 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 11/155 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++++ NIG + R+ + + L + +A S + +I + Sbjct: 125 IVVIHGVTDTTNIGAIFRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWTWADA 184 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ L F A A + ++ + P + + ++ G E GL + Sbjct: 185 PLA-ALRRLGFRTAALALSDDSV-PLDTP---------ALKQEPRLALVMGTEGDGLPHA 233 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 IA ++ + P+ SLN++ A + WE Sbjct: 234 TIAEADYTVRIPMAHGVDSLNVAAASAVAFWELRR 268 >gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora DSM 43833] Length = 322 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G +AR+ F + + PS ++ ++ A S Sbjct: 168 PLIVALDGVTDPRNLGAIARSAAAFGAHGIVV-------PSRRSVGVTSGAWKT--SAGT 218 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + L A A + A + V +A + + + + ++ G E GL+ Sbjct: 219 LATLPVARA-SNLTQTLKAYRKEGLFVVGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLS 277 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN A + ++E Sbjct: 278 RLVRETCDMLARIPMGERVESLNAGVAAGIALYEIARRR 316 >gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + L+ S A ++ A+ V ++ +AI Sbjct: 224 PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLDAIEQ 280 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R S++ A + + + ++ G+ER GL++ ++ ++ Sbjct: 281 F----------RKAGYSIVTTSSHAGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLS 330 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 331 VSIDGTGNVESLNVSVATGVLLAEWWRQ 358 >gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115] gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115] Length = 148 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 29/162 (17%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L +P+ N+G VAR +L L+ P ++ + ++ V + + Sbjct: 4 VLFEPEKAGNVGNVARTCSVLG-AELHLIRPFGFRLHDREFRRAV--MDYLEGVTLHEHA 60 Query: 77 ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ ++A + A L + Q ++FG E GL Sbjct: 61 SWTAFQASLPAGARVFAFST--------------HATELYTQAGFQQGDYLLFGPESRGL 106 Query: 133 T---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + P SLN++ A + +E Sbjct: 107 PAWLRDALPK----LKLPQPGGGRSLNLAVAAGVAAFEAGRQ 144 >gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. JDR-2] Length = 251 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + + R + +SA A + RV + Sbjct: 105 ILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLA 164 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + ++ T +A + + I+ G E G+ Sbjct: 165 QTIDRLKEEGVWVAGT--------------DVSAPQDVYKTKFDLPLAIVIGNEGKGMGR 210 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P++ SLN S A ++++E + Sbjct: 211 LIKEKCDFLVKLPMHGRLNSLNASVAAGVLMYEVVRQR 248 >gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 19/169 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + +G + L Q N+G + R+ F + + + ++A Sbjct: 125 PVPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGGVE 184 Query: 67 VIDSVRVFSNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I V +NL A+ + T+ E A + + Sbjct: 185 DIPFA-VETNLNRALKLSRRVGLWNLGTS--------------EHAEKSVWEVDQKRPWM 229 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I+ G E+ GL + + I P SLN+S A +++ + Sbjct: 230 IVVGNEQKGLRRLVLEHCDQICQVPPLGETSSLNVSVAAGILLAALRRS 278 >gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 220 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82 N V R F + Q + R G + + A +D R + A Sbjct: 43 HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVDVFRYNDTQSCIDALRA 100 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I ATT P + A LN+ S + FG E+ GL+ + ++ ++ Sbjct: 101 QGYQIVATT------------PHKDAYFLNDFDIS-KKSAFFFGTEKEGLSEQVLSQADT 147 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 + P+ SLNIS AV +++ Sbjct: 148 YLKIPMVGFTESLNISVAVAIVL 170 >gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 168 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 25/173 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P N G +AR L L+ P +K + D V+V Sbjct: 5 IVLFEPLFPANTGNIARTCA--GTDTVLHLIKPLGFSTDDKHMKRA--GLDYWDKVKVVY 60 Query: 75 -SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L + + H A+ R+ + + +FG+E Sbjct: 61 HDDLVAFLDSIDLDHLYIASKFAERDYSEVDYTI-------------AGDHYFLFGKETT 107 Query: 131 GLTNEEIALS-NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL + I P + +LN+S ++++E + + V Sbjct: 108 GLPEGFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVH 160 >gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 287 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 33/181 (18%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------- 64 A+ + L + N+G + R + L+ S + ++ + Sbjct: 128 AEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMGSIFSVPLY 187 Query: 65 ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ F I T + +++++ F Sbjct: 188 RFDESAFLNWSTHFK---------GMIVGTHLKGSIDYRTID-------------FKNGP 225 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 V ++ G E+ GL + + + P + SLN++ A +M++E + + + Sbjct: 226 VILLMGNEKQGLPDILANCCDKLARIPQSGRADSLNLAVATAIMLYEIRRSYLTLEPRKA 285 Query: 181 K 181 Sbjct: 286 A 286 >gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 266 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 12/153 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V N G + R + K +SA + I R N+K+ Sbjct: 124 VLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVAR-DPNIKD 182 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + R++ VLA V Q +FG E GL E + Sbjct: 183 VL----------GKLRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDE 231 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN++ A + ++E ++ Sbjct: 232 ADMRVRIPILGRAESLNLATAASICLYESVKQQ 264 >gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101] gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum IMS101] Length = 234 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 26/183 (14%) Query: 1 MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 +TP + LQ + +IL D N V R+ +F + + +V ++ + Sbjct: 17 ITPARREKILSVLQQRTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTIT 76 Query: 56 KARSSSANADCVID----SVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAA 108 ++ + +D + + + +N +E + L ++ A T +K + Sbjct: 77 QSVTI--GSDRWLTLYRYNEQSINNTEECLKRLKNEGYVIAAT----TPYKEHIT----- 125 Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E + V ++FG E GL+ ++ + P+ S NIS + L ++ Sbjct: 126 ---IEELSVNTKVALMFGSEINGLSEYAKNNADVSVKIPMVGFSESFNISVSAALCLYNL 182 Query: 169 MEN 171 M Sbjct: 183 MSR 185 >gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter turicensis z3032] gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter turicensis z3032] Length = 243 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638] gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638] Length = 244 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L P IL N+G R+ + +V PRD + A+ + Sbjct: 86 PDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRAAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + +++ + +I T A + Sbjct: 144 GAAENVPLIRVTNLARTMRQLQEENIWIVGTAG--------------EADHTVYQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 RLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 277 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 16/176 (9%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P ++ + A+ +L + N+G + R+ + L+ P P ++ S Sbjct: 111 PSVREVCSGARRIA-VLENVMNPTNVGAIFRSAAALGM-DAVLLTPDCSNPLYRRSIRVS 168 Query: 62 ANAD----CVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + + + + L + T A + + V ++R+ Sbjct: 169 MGTVFQIPWTWLTAKETQHFPSYVRFLKSLCFGTAA--------MALTDSSIPVSDQRLA 220 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +I G E GL+ +A + + P+ SLN++ A + WE S Sbjct: 221 GEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVDSLNVAAASAVAFWELCRCS 276 >gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 265 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 12/150 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R+ L L + + ++S + + A Sbjct: 126 EKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMCFSLPIA------EAASQ 179 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T + N ++L+ A L + + +I G E++GL+ E + S+ Sbjct: 180 D------TINYLKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSI 233 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN++ A L+++E + Sbjct: 234 NVKIPMLGKADSLNVATATTLLLYEAVRQR 263 >gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797] gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797] Length = 158 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 18/158 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 ++L P + +N G + R +L LV P K + + Sbjct: 11 VVLYQPDIPQNTGNIGRTCVAVG-AKLWLVRPLGFQLDAKHLRRA--GMDYWQHLNWEAV 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E + L +R +K L V + + GQ +FG E GL Sbjct: 68 DSLAEVQSQLQ--------DRTWWK--LTKFATRYVWDAELEPGQ--VFLFGSESNGLPP 115 Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ + P++ SLN++ +++E + Sbjct: 116 RILEEDPDSNLKLPMHQEVRSLNLASTATAVMYEAVRQ 153 >gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea] gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea DSS12] Length = 232 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 18/162 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R + Q+ V WP + R +++ + + +++ + + +A+ Sbjct: 32 NIAAVIRTADAVGIHQVHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-MDDAVQA 85 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R ++ A+ E I + II G E G++ E IA ++ Sbjct: 86 F--------RAQDMQILATNFSADAVDFRE-IDYTRPTVIILGNEHDGVSPEGIAAADQH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 I P+ + SLN+S A L+++E V+ ++ + Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQRQVAGMYGTRKLDD 178 >gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis ZM4] gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ZM4] gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 268 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 16/150 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R L L++ S +A ++ A I + R L Sbjct: 129 PGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWEDFLVWLRQ 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + T+ R + P+ ++ G E GL + + Sbjct: 189 GEGDLIGTSLRA---TQDYQEPRYQTP-----------SFVLVGNEAQGLPDSYEDACDH 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN++ A +M +E + Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQ 264 >gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 161 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 60/153 (39%), Gaps = 11/153 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +IL Q ENIG++ R + ++ +++ S + + ++ +A+ + ++ Sbjct: 15 KEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTRSAENNL-NII 73 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +EAI N K V I+ G E+ G+ Sbjct: 74 FVNSWEEAINHF----------EKNTHFYALEKTNKSVDYTTFEYHFPCVIVCGNEKDGV 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +N+ + + + SLN++ A +++ Sbjct: 124 SNKALEKCTNHLHINMYGKNTSLNVAIATGILL 156 >gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Thiomonas sp. 3As] Length = 242 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV---FSNLKE 79 N+G + R + L + P+D + ++ A + + V +L E Sbjct: 104 PHNLGAILRTADAAGVH-LVI-APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGE 161 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T EAA Q ++ G E G+ Sbjct: 162 LQDRGLWVMGT--------------DEAATDDVYAANWTQPAVLVMGAEGAGMRRLVRET 207 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E + Sbjct: 208 CDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis DSM 14884] Length = 263 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 29/178 (16%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L PV++ V+P+ N+G + R + + Sbjct: 104 PRLEALDPPPHAPVLVAVNPEKPGNLGAILR----------------SADAAGAGAVVAV 147 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARN--------RNNFKSVLAPKEAAIVLNER 114 +++ + S+ + F T A + R + ++A A Sbjct: 148 GGVDLMNPNVIRSST-----GVVFTLPTAAASSEAALDWVRARGRRLVAASPHAETSYWE 202 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + V I G E GL E + ++ + P+ SLN+S + L+++E + Sbjct: 203 VDLTGAVAIAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLYEALRQR 260 >gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB 8327] Length = 221 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 15/189 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ + Q+ ++ R +++ ++A A V+V ++D Sbjct: 31 PHNLAAIIRSCDAVGIHQVHAISRRSSIRTKQ--HTAAGASR---WVKV------GLSDS 79 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R V + A+ I + I+ G E G + E + L++ + Sbjct: 80 IVPVGEKIREAGMQILVATYRPDAVDFR-SIDYTRPTAIVMGEELTGPSEEAMNLADHFV 138 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFLDYLEIS 202 P+ + SLN+S A L+++E + + + + A L L Sbjct: 139 YIPMFGMVESLNVSVAAALILFEAQRQRKAADLYDSRHFSD-AEFERLLFEYAYPRLSAV 197 Query: 203 LEERGYFRP 211 L E+G P Sbjct: 198 LREQGKPYP 206 >gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084] Length = 277 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + L L P P + +A +S + +A D Sbjct: 137 NVGALFRSAAALGVDALLL-APTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFD-- 193 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R LA E A+ L++ + V + FG E GL+++ ++ + Sbjct: 194 -----ALRADGFTSVALALDECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSA 248 Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168 P++ SLN++ + + WE Sbjct: 249 IIPMSRGVDSLNVAASSAVAFWEL 272 >gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109] gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109] Length = 163 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 38/172 (22%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L +PQ+ N G +AR F + L L+ P +++ + V Sbjct: 4 IAPLRIALFEPQIPPNTGNIARTSAAFRVP-LTLIEPLGFKVDDRSVRRA--GLDYWPHV 60 Query: 72 R--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------- 122 + + SN E F++ L P++ I + R S + Sbjct: 61 QLSITSNFAE------------------FQAELRPEQRLIGCSRRGGSSLSSFTFQRGDV 102 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166 ++FGRE GL ++I++ P+ SLN+S A L+ + Sbjct: 103 LLFGREDTGLPEPVREACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154 >gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLYQSKMTG-PLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118] gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118] Length = 256 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 21/166 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 + +++L N+G R + ++ P+D A + ++ A + Sbjct: 106 EALILVLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPY 163 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + L E +I T+ + A + V ++ G Sbjct: 164 FMVTNLARTLNELKERNIWIIGTS--------------DVAPKTIYQADLKGPVALVLGA 209 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 210 EGDGMRALTAKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQRM 255 >gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 268 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ V++L +N+G + R F + L KA S A + + Sbjct: 118 PARAMVLVLCGIANHDNMGGIYRNAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPT 177 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R+ + E+IAD + AT L+P +A + + ++ G E Sbjct: 178 ARL--SRDESIAD--LLDAT-----GFEGLALSP--SADEILATLKPAARTAVLLGTEGP 226 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ + +A + I P+ F SLN++ +++ Sbjct: 227 GLSPDVMARARRI-GIPMANSFDSLNVATTSGIVLHHLR 264 >gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 249 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L ++A G ++LV Q N+G R+ +T + + + + R +S+ A Sbjct: 90 DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + +L+E +IY + A+ L V Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLEGEAETSL--------YALDLR------GKV 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E GL + + P+ SLN+S A + ++E + + Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248 >gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia K12] Length = 242 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV---FSNLKE 79 N+G + R + L + P+D + ++ A + + V +L E Sbjct: 104 PHNLGAILRTADAAGVH-LVI-APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGE 161 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T EAA Q ++ G E G+ Sbjct: 162 LQDRGLWVMGT--------------DEAATDDVYAAKWTQPAVLVMGAEGAGMRRLVRET 207 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E + Sbjct: 208 CDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240 >gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3] gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3] Length = 286 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L + N+G + R + + LV S + ++ + R ++ Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVAR--AS 192 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++E + A++ + AT +++ + +G+ V ++ G E+ G Sbjct: 193 VEEFLSWKKSANVS-VVATHLAGSVDYRKIDY-------------AGKPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E ++ + P SLN++ A +M++E + + + Sbjct: 239 LPPELAGRADQLARIPQQGRADSLNLAIATAVMLFEARRHLLELAP 284 >gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 21/178 (11%) Query: 1 MTPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPS 54 M P A L++ A P +L+ N+GM+ R + + + V D Sbjct: 70 MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 129 Query: 55 EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + + + +A + + + E + + + + A + A Sbjct: 130 KASAGVAFHAPVL--RAQTAGHAAELLTEAGY-------------PLYALEAGAQESIYE 174 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + G E GL+ + ++ P+ SLN++ A ++ +E + + Sbjct: 175 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRT 232 >gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH 8501] Length = 216 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 25/175 (14%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L + N+ + R + + +N D +P+ S + + + Sbjct: 24 VLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT---FSQVSQGSDKWTFLHTHPD 80 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERW 130 +K AI T +++ A E+ Q I+ G E+W Sbjct: 81 IKTAI--------TYLKSKKINI-------YAAHFTEKSLDYRDIDYTQPTAILLGAEKW 125 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 G++ E L + I P+ + SLN+S A ++++E + + + Sbjct: 126 GVSEEAANLVDGNIIIPMLGMVQSLNVSVAAAVILFEAQRQRLAGKMYDTSRLDP 180 >gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 292 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 12/148 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ N+ LV PR P ++ S + R L+ ADL Sbjct: 155 NVGAIFRSAAALNV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWAR----LESWPADLQ 209 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 T + LA +E ++ L E + + +I G E GL+ +A + + Sbjct: 210 -----TLHELGFKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTV 264 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 P++ SLN++ A + WE S Sbjct: 265 MIPMSHGVDSLNVAAASAVAFWETRPRS 292 >gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470] Length = 269 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 23/167 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 PQL N G ++L Q N+G + R + + L SEK SS + Sbjct: 110 PQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGS- 168 Query: 66 CVIDSVRVFSNLK-EAIADLHFI-----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++ + ++ +L E + ++ T+ N++ + + G Sbjct: 169 -IL-RLPIYHDLDIEFLKEIKSFSKVPFIGTSLSASQNYRH-----------AKFVTEG- 214 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E G++ E + L++ + P+ SLN+S ++++ Sbjct: 215 --VFIFGNEGSGISPEILDLTDWNVFIPMAGTVESLNVSSTAAIILF 259 >gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans K601] gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus denitrificans K601] Length = 248 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64 + A +++L N+G R ++ P+D A + ++ A Sbjct: 93 EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGISATVAKVASGA 150 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + L E ++ T+ A ++ V Sbjct: 151 AETMPYFMVTNLARTLGELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247 >gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter piechaudii ATCC 43553] Length = 245 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 19/173 (10%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ + +GP ++IL N+G R + ++ PRD + + + Sbjct: 87 EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + V + A T R ++ ++ + A +I + Q + Sbjct: 145 GAADTVPYLMVTN------------LARTMRGLKDRGVWLVGTDDQATDSMHKIDARQPM 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245 >gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus lacrimalis 315-B] gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 234 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G +AR+ FN + + R+ ++ +S A ++ +V +NL + I Sbjct: 99 EDPHNLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGAVDNVNICQV-TNLSQTIE 157 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + F + A + + FSG V II G E G+++ I S+ Sbjct: 158 KL---------KKAGFW-IYAALLEGDNIKDVDFSG-KVAIIIGNEGKGISDNLIKASDF 206 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 + P F SLN S A ++++E + Sbjct: 207 KVKIPNLSEFDSLNASVAAGIIMYEVIR 234 >gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2] gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M] Length = 260 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 +P L ++L Q N+G + R+ + P + S K + Sbjct: 104 SPPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAGMG 162 Query: 64 ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + ++ EA+A AR V Q V Sbjct: 163 AHFLLS---IHEDVAPEALA---------AR---LDVPVALTDSHGAQAIYDCDLSQPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ ++ ++ P SLN++ A + ++E + Sbjct: 208 WVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638] gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638] Length = 365 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + L+ S A ++ A+ V I V ++E Sbjct: 228 PHNLGAMMRSCAHFGVKG-VLLQDAAIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFR 286 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I T++ P+ + ++ G+ER GL++ ++ ++ Sbjct: 287 KAGYSIVTTSSHTGTPLFQATLPR--------------KMVLVLGQERDGLSDAALSTAD 332 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 333 LSVSIEGTGKVESLNVSVATGVLLAEWWRQ 362 >gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1] gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1] Length = 260 Score = 59.3 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 29/170 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P AP LQ P ++L Q N+G + R+ F Q+ + G S K + Sbjct: 104 PEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGM 161 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIY----ATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + L A+ D+ + AT++ + P Sbjct: 162 GAHFALH---LVEGL--AVDDIDALALPLLATSSHGGDLLHRARLPW------------- 203 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G I G E G++ + +I P SLN+ A + + Sbjct: 204 -PCGWILGHEGQGVSEALQQRATHLIRIAQPGGEE--SLNVGAAAAICLH 250 >gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827] Length = 249 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 24/179 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P S P +++L N+G R+ + +V P+D + A+ + Sbjct: 86 PDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + RV + L+ + + + +I T A + Sbjct: 144 GAAESVPLFRVTNLARTLR-LLKEYNVWIVGTAG--------------EADHTLYQSKLT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E G+ + +IS P+ SLN+S A + ++E + S Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQRAEKSA 247 >gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12] Length = 263 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 10 NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA--- 64 + + P+++L+ N+G + R+ F + R P A + +++ A Sbjct: 108 PADRPPLVVLLDRVTDPHNVGAILRSAEVFGAAA-VISTARSAAPETGALAKTASGALER 166 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + ++E A + + + L R + + + ++ Sbjct: 167 QPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTIGTAL-----------RDLTDRPIALV 215 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E GL ++ N ++ P F SLN+S A + ++ C Sbjct: 216 LGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260 >gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 271 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 11/154 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + Q N+G + R L + L + K S+ + +D + V + Sbjct: 127 VLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVD-IFVEKDF 185 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + I + + A + + FS + ++ G E GL ++ Sbjct: 186 ERVIEAFRL---------KDIPTAAAVINGGTEIRQYDFS-KGCAVVIGNEGRGLMHDHA 235 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ ++ SLN + A + +WE Sbjct: 236 EMCSHKVTIAMHGHIDSLNAATAATIFLWEMTRQ 269 >gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 269 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 24/160 (15%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R ++ + + NP+ + SS + E I Sbjct: 125 PEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GTTAEVI 182 Query: 82 ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L + A TA K + + I+ G E GLT+E Sbjct: 183 DFLKAKNISSYCAALTA-----SKPYY-----------EVSFSEASAIVVGTEDQGLTDE 226 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + S I P+ + S+N+S A ++++E +++ Sbjct: 227 WLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRVMT 266 >gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter chlorophenolicus A6] Length = 329 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 28/168 (16%) Query: 17 IILVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71 + L N+G + R++ F +V P R + A +SA A + Sbjct: 181 VALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAAVRVPVA 235 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 R SNL A+ F+ + + L + + + V I+ G Sbjct: 236 R-ASNLNSALKQFKNMGIFVLGLDG-------------DGDVSLPDLSLATEPVCIVVGS 281 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E GL+ + I+S P++ SLN S AV + ++E Sbjct: 282 EGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQRAAK 329 >gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] Length = 242 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 34/172 (19%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR-------LVNPRDGWPSEKARSSSAN 63 + G + L D + N+G + R F++ Q+ + NP+ S ++ Sbjct: 93 NLSGLTVALDDVKDPGNLGTIIRLCDWFDVKQIICSTETVDVFNPKCVQAS-----MASL 147 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +D V NL+E + D TTA + + E + + Sbjct: 148 GRVQVDYV----NLEEFLQDASSKIFTTA-------------MNGVSIYETNLPDHGI-L 189 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPS---LNISQAVLLMVWECMENS 172 + G E G++ E + L N I S P PS LN++ A +++ E ++ Sbjct: 190 VMGNESAGISEEIMKLGNKI-SIPQYGSQPSTESLNVAMATAVVLGEWRRST 240 >gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 17/149 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F + +V P A+S+S + V NL EA+ Sbjct: 144 PHNVGAIVRTAAAFGVAG--IVTTARHAPGATGVLAKSASGGLEHVP--FVTVRNLAEAL 199 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +L R + L A + + + + I+ G E GL + Sbjct: 200 IELG--------ERGFTRVGLDSD--APESLDALTVARPLVIVLGAEGKGLRERTRGCCD 249 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + P + SLN+S A + ++ Sbjct: 250 VLARIPFSGAIRSLNVSNAAAITLYALGR 278 >gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4] Length = 227 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + + SA A ++ V ++ AI+ Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLAHTSAGARNWVE-VDTHDSIDTAIS 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L +++ V + A+ + I + II G E+ G ++ L++ Sbjct: 84 EL--------KSQGMQVLVTNLSDTAVDFRD-IDYTKPTAIILGSEKVGASDRAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYQREESALP 178 >gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 254 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L D N+G + R + L N + K + S + ++ ++ ++ Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AIA L A + + S+L P A V +I G E G++ E Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFVPVAQVALIIGNEAHGVSPEI 221 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL++ + P+ SLN + A +M++ Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIY 251 >gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 322 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 + + +A+ P+I+ L N+G V R+ F +T + + R + A SA A Sbjct: 162 ERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVNAAAWKVSAGA 221 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + L E F+ + L + + + Sbjct: 222 AARVPVARETNLVRALGELKEAGCFVVGLDGGGD-------------VSLRDLDLATGPL 268 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL+ + I+S P++ SLN + A + ++E + Sbjct: 269 VVVTGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAEA 322 >gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ] gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma phagocytophilum HZ] Length = 258 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSAN 63 Q + + +++L + N+G V R FN+ + L +P + KA S+ Sbjct: 101 QTEAAPTSTILVLDEVTDVHNVGAVLRTAACFNVDAVVLTEHNSPSESCGMAKA---SSG 157 Query: 64 ADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ V + L+ ++ Y A V + Sbjct: 158 AIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDASGGTCLHQVEF--------------SER 203 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +I G E G+ + + ++ P++ SLN+S A + ++ Sbjct: 204 RVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMYSVF 252 >gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia proteamaculans 568] gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia proteamaculans 568] Length = 243 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + L+ ++ T A + Sbjct: 144 GAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG--------------EADHTLFQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242 >gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 218 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ +F + +L ++ + ++ + A +D V+ S+ K I +L Sbjct: 43 HNTSAVIRSCESFGVQELHVIEEVNVKRIDREIAM--GAQKWVD-VQRHSSAKHCIENL- 98 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R + +P + A L E + I FGRE GL++ + +++ I Sbjct: 99 -------RKQGYKIVATSPHKDAHRL-EDFDITEKAAIFFGRETEGLSDTVLDMADDFIY 150 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS + + + Sbjct: 151 IPMVGFTESLNISVSAAITL 170 >gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32] gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32] Length = 249 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 22/172 (12%) Query: 3 PYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P+ SA P ++L +P+ NIG V R L+ + D W R S Sbjct: 94 PAWPESARSADRASPAVLLENPRNLGNIGAVIRVAAGLGLSSVYSTGTVDPWHPTVIRGS 153 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + L A + + A I L E + Q+ Sbjct: 154 AG-----LHYALPVRRL--------------AGIHEAEGPIYSLDPAGIDLREAVIP-QD 193 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + FG ER G++ E S+ ++S P+ S N++ +V + + + +S Sbjct: 194 ALLAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMAAYHWVLSS 245 >gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 217 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + + ++ + P + + A +D R S + +L Sbjct: 44 HNTSAVVRSCDVFGIQNIHVI--EEKIPRRIDKEIAMGAQKWVDINRYTSTTT-CLKNL- 99 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + ++ V L E + FG E+ GL+ E + ++A + Sbjct: 100 --------KKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMREADATVK 151 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS + +++ Sbjct: 152 IPMVGFTESLNISVSAAIIL 171 >gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus stomatis DSM 17678] Length = 244 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 12/160 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL N+G + R + + R + +SA A + +V + Sbjct: 97 IILDGITDPHNLGSIIRTADAVGAHAVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTN- 155 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 I T + N + A ++ G +G++ G E G++ Sbjct: 156 ----------IVNTIKTLKENGLWIAAVDMDGHTFYQQNL-GGPLGLVVGSEGEGISRLV 204 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +S P++ SLN S A ++++E S Sbjct: 205 KQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNASK 244 >gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909] gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1] Length = 248 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 26/155 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFSNLKE 79 Q N+G + R+ F + L + +EK S+ A +++ NL+E Sbjct: 113 QDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLPILNQ-----NLEE 167 Query: 80 AIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A+ L IY T+ N + + +E + I G E G++ E Sbjct: 168 AVTSLKEQGVRIYGTSL---QNGRPLNEIEETM-----------KMAFILGNEGSGVSKE 213 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++L++ I ++ SLN+S A ++++ + Sbjct: 214 LLSLTDGNIFIEMSENIESLNVSIAGSIIMYRFRQ 248 >gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 244 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL N+G + R + + R + +SA A + +V Sbjct: 97 IILDGITDPHNLGSIIRTADAVGAHGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNI 156 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +K+ + +I A + + + ++ G E G++ Sbjct: 157 VNTIKQLKEEGLWIAA---------------VDMGGDAFYQTNLTGPLALVVGSEGEGIS 201 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +S P++ SLN S A ++++E Sbjct: 202 RLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNAKK 244 >gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 174 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++G N G + R+ + L +L ++ P K A A ++ + Sbjct: 4 IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLDPKHLKRPA-AGILLSEIEHEIH 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + N E + + T R K + I + +++ +FGRE G Sbjct: 62 KNWQNFSEKYGQKNLFFIT----RYGQKLY-----TEVDFYTEIETKKDIFFVFGRESTG 112 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ SLN++ V+++ +E Sbjct: 113 IPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFHRQ 153 >gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 217 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 23/168 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + + ++ + +P R + A + SV ++ KE I+ + Sbjct: 44 HNTSAVIRSCDVFGIQNIHVI--EEKFPKRIDREIAMGAQKWV-SVNRHASAKECISHVR 100 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 I AT+ P + ++ L + + + + FG ER+GL+ E I ++ Sbjct: 101 EMGYQIVATS------------PHDDSLHLGDFDIT-KKSALFFGTERYGLSQEIIDEAD 147 Query: 142 AIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSSEKNVKEQNTP 186 + P+ SLNIS + ++ + E M V + N +E+ Sbjct: 148 CTLKIPMYGFTESLNISVSAAIILQSLAEKMRKDDVKWQLNEQEKEAL 195 >gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + A+ + A + +RV + Sbjct: 76 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 133 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + G + ++ G E G+ Sbjct: 134 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 182 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 183 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 219 >gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406] gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406] Length = 176 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 14/166 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +I+L + + N+G R F + ++ L P+ + ++ A + Sbjct: 19 KTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGATESV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNVGIIF 125 + + + N +L+ ++ + + I +IF Sbjct: 79 EW-----------EHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIF 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E +G++ E I LS+ I P S N+S +++WE Sbjct: 128 GNEVYGVSEEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRR 173 >gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 248 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 23/179 (12%) Query: 7 QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62 +L +S +G +++L N+G R + ++ P+D A ++ Sbjct: 86 ELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAH--AVIAPKDRSAGINATVEKVAS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L++ ++ T ++ KS+ P Sbjct: 144 GAAETVPYITVTNLARTLRQLKERDIWVVGTA---DDSDKSLYEPDY-----------AG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + +++ P+ SLNIS A + ++E ++ + Sbjct: 190 GTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARRQRLMKIRQ 248 >gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894] Length = 357 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ +F + +V S A ++ ++ + + +A+A Sbjct: 220 PHNLGAIVRSCAHFGVKG-VVVQDASLLESGAAVRTAEGGAEHVEPIT-GDSFSDALAQF 277 Query: 85 H---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + TT+ ++ P A + + + ++ G+E G++ A ++ Sbjct: 278 RAAGYAIVTTSSHKG------TPLFKATL-------PKKMVLVLGQESEGISEATQANAD 324 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 325 LSLSIDGTGNVESLNVSVATGVLLAEWWRQ 354 >gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 242 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N++ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 247 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + + R + +S A + RV + Sbjct: 100 LDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSR 159 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + E +I T A+ ++++ + G + ++ G E G++ Sbjct: 160 TIDELKDRGVWIVGTDAKESDDYR--------------NLDGGMPLTLVIGSEGKGMSRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ SLN S A L+++E Sbjct: 206 IREKCDFLVQLPMVGHVTSLNASVAASLLMYEVYR 240 >gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753] Length = 255 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 14/168 (8%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L + P ++V + N+G + R + + R + +SA A Sbjct: 94 ALADERGEPPFLIVADELNDPHNLGAILRTAECTGAHGVIIPKRRSAGLTYTVGKASAGA 153 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV SNL A+ DL + R + + E +G ++ Sbjct: 154 LEYVPVARV-SNLAAALEDL--------KKRGLW--IYGADMEGTPWCEAELTG-PAALV 201 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + I+S P+ SLN S A ++++E M Sbjct: 202 IGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGVLMYEFMRQR 249 >gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 155 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 25/170 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+ P++ N G R +L LV P G+ A+ A D + V V Sbjct: 3 RILFHTPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60 Query: 75 SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ EA+ +YA T+ I ++FG E G Sbjct: 61 KSIEAAWEALQP-ERVYAFTS--------------DGETSYADISYLPGDVLLFGPESVG 105 Query: 132 LTNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L E+ + + P+ P SLN++ A + V+E + + K Sbjct: 106 LP-AELKNDPHVTSRVRLPMLPSLRSLNLANAASIAVFEAWRQNGFAGAK 154 >gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 270 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 22/153 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79 N+G + R L LV S +A +S A + +V + L Sbjct: 129 PGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASMGA---LFTVPIVKTEWQPFLDW 185 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + +++ ++ G E G+ + A Sbjct: 186 LRQGPGQLVGLSLDTETDYR--------------SADYTAPTFLLTGNEAQGMPADYAAA 231 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN + A +M +E + Sbjct: 232 CDVLVKIPMLGKADSLNAAVATAVMAYEVLAQQ 264 >gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis C4D1M] Length = 247 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 20/181 (11%) Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSE 55 P A L G +++L N+G R ++ PRD + Sbjct: 80 PLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNA 137 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 A ++ A + + V +NL A+ +L V EA L E Sbjct: 138 TAAKVASGAADTVPYITV-TNLARALREL---------KEAGVWIVGTAGEAKKSLYETE 187 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G V I+ G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 188 LDG-PVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVK 246 Query: 176 S 176 Sbjct: 247 K 247 >gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48] gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas entomophila L48] Length = 247 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +++L N+G R T + + + + R + A VI Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVVIPKDKSASLTAVVRKVACGAAEVI 151 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V V + L++ ++ T EA + ++ +G V +I Sbjct: 152 PLVAVTNLSRTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-MIM 197 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 198 GAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM 15053] Length = 263 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 15/159 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRV 73 +++L + Q N+G V R +T + + + + K S+ + + + Sbjct: 115 ILVLDNLQDPGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAK- 173 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L EA+ R + + A ++ + + G E GL Sbjct: 174 --DLTEAVR----------RMKESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLR 221 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E AL++ I P+ SLN + A ++++E Sbjct: 222 EEVAALADTYIRIPMEGEVESLNAATAAAVLMFEAARQR 260 >gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 259 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 23/165 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDS 70 KG ++L Q N+G + R F ++QL + K ++ A VI Sbjct: 111 KGVRVVLDGVQDPGNLGTIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGSLARVVISY 170 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V + S L+E TT E + +E+I ++ G E Sbjct: 171 VDIKSLLQE----------TT------LPIYGGVLEGVSLYSEKIEEDSY--LVVGNEGN 212 Query: 131 GLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECMENS 172 G++ E IA+ I+ P + SLN++ A +++ E M + Sbjct: 213 GISEEIIAILTHKITIPQYGASQKTESLNVATATAILLSEVMRTT 257 >gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum CMR15] Length = 259 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K ++ A Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166 Query: 68 IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V + A LH + AT++ R+ + + VG +FG Sbjct: 167 LNVVEHC-TFESVHARLHVPLLATSSHARHAVFDMPL--------------NKPVGWVFG 211 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G++ + +++ IS P SLN+ A + ++E + VS Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVGAAAAICLFEAVRQRRVS 259 >gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 258 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 20/170 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S PV++L +P+ N+G V R F + + D W RS + + Sbjct: 108 PSRSAPVVVLDNPRNLGNVGAVVRLAAGFGVAGVVTTGDIDPWHPNAVRSGAG-----LH 162 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L + + L +A + + + FG ER Sbjct: 163 FATAVERL---------------TSDDLPPGPLYALDAEGEDIRSVVIPDDALLAFGSER 207 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G++ E + +++ P+ P S N++ +V + ++ + Sbjct: 208 HGISPEVRKRATRLVALPMRPQVSSYNLATSVAMALFHWGGPVQAPPAQP 257 >gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219] Length = 235 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 13/151 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+L + Q N+G + R +F + + K +S A +F Sbjct: 95 VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGA--------IF- 145 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ DL + ++ K + + +I L +++ ++ I+ G E G+ Sbjct: 146 SIPVFREDLKNVI--SSLQERGIKVLGTSLQQSIPL-KKVKKEDDIAILLGNEGQGVKGN 202 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + L + I ++ F SLN++ A ++++ Sbjct: 203 LLELCDEITRIEMSG-FESLNVAVAGAILMY 232 >gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel] gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel] Length = 262 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 21/145 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV---FSNLKEAI 81 N+G + R+ F++ + L P PSE S+ A ++ VRV ++ Sbjct: 121 NVGAIVRSAACFDVDAVIL--PEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLK 178 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + ++ Y I + II G E G+ + Sbjct: 179 QNGYWCYGM--------------DVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCD 224 Query: 142 AIISFPVNPLFPSLNISQAVLLMVW 166 ++ P++ SLN+S A ++++ Sbjct: 225 HLVKIPMSARINSLNVSNAAAIVLY 249 >gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii Ech703] gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii Ech703] Length = 244 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L + P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +RV + A T R N V EA L + +G Sbjct: 144 GAAESVPLIRVTN------------LARTLRFLQERNVWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E G+ + +IS P+ SLN+S A + ++E + + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRL 243 >gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01] gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 227 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VDTHDSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYEREESALP 178 >gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 11/153 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + RA + L +EK SS + I ++ + Sbjct: 110 VLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGS---IFNMNIV--Y 164 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 E + + F+ +K ++ E + I + IIFG E G+++ + Sbjct: 165 MEELQLIQFL------KEKKYKFLVTALENNSIEYTDITLSEKNAIIFGSEGNGVSDNFL 218 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +++ + P+ SLN++ A +++++ E Sbjct: 219 KVADETVIIPIYGSAESLNVAMASGIILYKVRE 251 >gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 254 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 10/101 (9%) Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L+EA+ A R+ +VLA + E +FG E GLT + Sbjct: 164 TLQEAV----------AALRSAHLAVLAADASGTTDVETAPLAAPSAWVFGTEAQGLTAD 213 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E+AL++A++ P+ SLN++ A + ++ V Sbjct: 214 ELALADAVVRVPLRGHAESLNVAMAATVCLYASSRAQHVPG 254 >gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 25/164 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAI 81 + N+GM+ R + L PR G P ++ V + L +A+ Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIIL--PRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDAL 179 Query: 82 ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L IY + A + + G E G+ + Sbjct: 180 QQLRQANYTIYGLSGT--------------ATSTLYNLSFSPFSVFVLGNETEGINRDHH 225 Query: 138 ALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENSIVSSEKN 179 L + +S P+ FP SLN++ A ++ +E + N Sbjct: 226 NLIDTWVSIPI--EFPAESLNVASAAAVVCFELKRQHLEQHSSN 267 >gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62] Length = 157 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 +LV P++ N G + R+ L +L L+ P EK+ + V + + Sbjct: 9 VLVTPEIPYNTGAIGRSCVALGL-ELILIKPYGFSLDEKSVRRA--GTDYWKHVDLSEYD 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + R + + +E + ++FG E GL Sbjct: 66 SWADFLE-----------TRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPA 114 Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173 + + + P+ + SLN++ +++ M ++ Sbjct: 115 SVLDGMEDRMFHLPMLDTRVRSLNLANVATAAIYQAMRGTL 155 >gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae P1031] gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA17545] Length = 242 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 242 >gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP19-BS75] gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae INV104] gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Streptococcus pneumoniae GA47901] Length = 242 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 242 >gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92] Length = 238 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + + V P++G+ + R ++ +D + S R +++ AI+ Sbjct: 30 PRNLSALVRNCDAVGIHSIHTVVPKEGYRT--YRGTAKGSDYYVKS-RAHESVENAIS-- 84 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R + + AI E F+ Q ++ G E+ G+++ +S+A + Sbjct: 85 --VV----RQQGMKVVAAHFSDKAIDYREFDFT-QPCALLMGAEKQGVSDVAAQMSDAHV 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P+ + SLN+S A +++ E + + Sbjct: 138 VIPMMGMVSSLNVSTAAGIILVEAQHQRLKAG 169 >gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis Nb-231] Length = 256 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 15/168 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 +L Q N+G R + ++ PRD + ++ A I Sbjct: 102 VLDQVQDPHNLGACLRTAAGAGVQ--AVITPRDRAVGLTPTVYKAATGAVQHIP------ 153 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + T + R ++ E A V + + ++ G E GL Sbjct: 154 -----LFQVTNLARTLRKLREAGMWLIGAAEQADVTLYEVDLSGPLVLVMGAEEAGLRRL 208 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 A + +I P+ SLN+S A ++++E + + K + Sbjct: 209 TRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQRMHGFTKPPLRE 256 >gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818] Length = 717 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 13/182 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI + R F + + ++ R S AD + V + + + +A L Sbjct: 43 GNISAIQRTCDAFGVHDFHTIRRFPMDRMKQHRHVSKGADKWL-RVHRWGSTGDCMAHLR 101 Query: 86 ---FIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + A TA + ++ A+ L Q +FG E G++ + + ++ Sbjct: 102 QHGYRIAVTAVADDSSSNHASVTDLHALEL------DQPTAFVFGNEVAGISTQALEEAD 155 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 ++ P+ +LN+S A ++ + V ++ + L L Sbjct: 156 VLVQIPLVGFVSALNVSVAAGCVLHHATLQRRRFQGDDGGVISEDEALARMTTELLLRSL 215 Query: 200 EI 201 Sbjct: 216 GE 217 >gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 150 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 25/163 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV- 73 I L +P++ N+G V R + L+ P W + R ++ ID V + Sbjct: 2 RIALFEPEIAGNVGAVLRLGACLGAA-VDLIEPMGFTWDDRRVRRAAM---DYIDHVTIA 57 Query: 74 ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F + I + TT + + P + ++FG+E Sbjct: 58 RHADFDAFRATIGAQRLVLFTTKSAESVYDFAFRPDDI---------------LLFGKES 102 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ A I P+ P S+N++ + L + E + + Sbjct: 103 AGVPAPVSDACTARIRIPMRPEVRSMNLAMSAGLALGEALRQT 145 >gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681] Length = 248 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74 I+L + + N+G + R +V P R + +SA A + RV Sbjct: 99 ILLDEIEDPHNLGSILRTADCTGAHG-VIV-PKRRSAAVTVTVSKTSAGAVEYVPVARVN 156 Query: 75 S---NLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + + ++ T TA + V V I+ G E Sbjct: 157 NLGQTIDRLKEEGVWVVGTDVTATDPVFGNGVFT---------------GPVAIVIGNEN 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G+ + ++ P+ SLN S A ++++E + Sbjct: 202 KGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLRGRQARG 248 >gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 229 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++L Q N G + R F + + + R + S+ A I +R Sbjct: 80 PNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKNRACEVTPTVLKISSGAFTEIKIIR 139 Query: 73 V---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V F LKE +N F + + + +I G E Sbjct: 140 VGSLFDTLKEL-------------QKNGFWIYSSTLDDKATKLHKTKFATPTCLIVGNEE 186 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+++ I S+A++ SLN++ A ++++E + Sbjct: 187 SGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEATK 227 >gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M] Length = 275 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 13/172 (7%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T ++ + A V + V+ N G + R + L + K +S Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQ 119 A + I V V + A+ R VLA + I Sbjct: 170 AGSIFAIP-VIVAPDTSAAL----------GALRGAGLQVLASVLDGEKSLDDIDQLLEA 218 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL+ E A ++ + P++ SLN++ A + +++ Sbjct: 219 PTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARA 270 >gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A] Length = 181 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 13/171 (7%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + K P V++L D + N+G + R+ F + + L P+ + ++ + Sbjct: 16 EFKEAKKLPLVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAEIHKTALGGE 75 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNVG 122 ++ + F+ ++AI LH ++ + + E ++ L + + Sbjct: 76 DSVEW-KYFTRTEDAIVALH--------DQGYYVYCVEQVEGSVKLQDLSKILTPHSLYA 126 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 II G E G+ + LS+ I P SLN+S +++WE + + Sbjct: 127 IIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWEFAKAYL 177 >gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae ATCC 29220] Length = 243 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIAALDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +I P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279] Length = 210 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 28/193 (14%) Query: 1 MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPS- 54 MTP + N + + +L++ N + R+ + + + + G P+ Sbjct: 1 MTPERLARIRAVLNKRQPDLTVLMERVHKPHNFSAILRSCDAVGVLEAHAIPAKHGIPNL 60 Query: 55 EKARSSS-----------ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103 E+A S + A V +++ ++ A A L AR + + Sbjct: 61 EEAEDLSLKGKTFNETSGSAAKWV--GLQLHADTASAFAHLK------ARGFQVLAAHFS 112 Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 + V + + I+ G E+WG++ E L++A I P+ + SLN+S A + Sbjct: 113 ER---AVDYRQADYTRPTCILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAV 169 Query: 164 MVWECMENSIVSS 176 +++E + + Sbjct: 170 ILFEAQRQRLQAG 182 >gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 294 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P Q A+GP ++ LV + N G V R + + K +SA Sbjct: 117 PLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAG 176 Query: 64 ADCVIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +D VR L EA+ I ATT ++ + A Sbjct: 177 SLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAA----------P 226 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +FG E GL +E ++A + P++ SLN++ A + ++ + Sbjct: 227 TAWLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSARAQRAPRATHD 286 Query: 181 KEQNTPAT 188 + ++ Sbjct: 287 TAGESASS 294 >gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor] Length = 220 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 21/145 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G +AR+ F + ++ +V RD + S A + R F++L A+A + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASL--ALARAY 69 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R + E A + F ++ +FG E GL+ +E + + + Sbjct: 70 L-----KEERGCDICGVEITEDAKPVTAHPFH-RSTAFLFGNEGTGLSQKECDICDFFVY 123 Query: 146 FPVNPLFP----SLNISQAVLLMVW 166 P + SLN++ A +++ Sbjct: 124 IP---QYGGGTASLNVTVAASIVLH 145 >gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1] Length = 258 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 24/169 (14%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 ++ +I+L + +NIG +AR+ ++ L L PR G R+ + Sbjct: 102 KESTLDALGNHIIMLDEISNTDNIGSIARSAAALDVGSLLL--PRQGPHPYARRALRVSM 159 Query: 65 DCV--IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + + R + N+KE I A ++ V P + A Sbjct: 160 GHIGKLKFHR-YDNIKETIQKLKKMGYRIFAAEVTKDSTPLSQVRVPGKWA--------- 209 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E+ G+++E +AL + +++ + S N++ A +M++ Sbjct: 210 -----LLMGHEQLGISDEILALCDEVVTIEMEEGIKSFNVAVAASIMMY 253 >gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10] gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10] Length = 148 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 23/162 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSV 71 I+ P + +N+G R F +L ++ P ++K +A A + Sbjct: 2 RIVFFQPDIPQNLGAAMRVAACFG-AELDIIEPCAFPLTDKGIRRAAMDYQAAISPLRHA 60 Query: 72 --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + EA A + TT + P + ++FGRE Sbjct: 61 SWKAYQASAEASAG-RLVLFTTRGAGKLWDFSFRPDDR---------------LLFGRES 104 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ ++ + + P+ SLN++ + + + E Sbjct: 105 AGVPDDVHDAATCRVKIPIREGMRSLNVTVSAGIALAEASRQ 146 >gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse] Length = 157 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFSLSDRNLKRA--GMDYLEYASLNRH 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + D +T ++ + +L A +I+ +N ++FGRE G+ + Sbjct: 62 I-----DWQSFMST---MKHFNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ P SLN++ +V + E + Sbjct: 114 HEAVDHSLKIPMQPHARSLNLAMSVAITTGEALRQ 148 >gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301] Length = 178 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 11/147 (7%) Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P A + K PV ++L + + +N+G R F + ++ L PS ++ Sbjct: 12 PSAEEFAAMEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTA 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120 A+ + S + IA L R + E A++L+ R G Sbjct: 72 LGAEMTVPWSYCASTVG-CIAQL--------RAEGYAVYAVEQVEGAVMLDAFRAAPGVK 122 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFP 147 ++FG E G+ E + + + P Sbjct: 123 YALVFGNEVDGVGQEAVDRCDGAVEIP 149 >gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58] gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58] Length = 286 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L + N+G + R + + LV S + ++ + R ++ Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVAR--AS 192 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++E + A + + AT +++ + +G+ V I+ G E+ G Sbjct: 193 VEEFLSWKKSAHVS-VVATHLAGSVDYRKIDY-------------AGKPVVILMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E ++ + P SLN++ A +M++E + + + Sbjct: 239 LPPELAGKADQLARIPQQGRADSLNLAIATAVMLFEARRHLLELAP 284 >gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1] gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida GB-1] Length = 248 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 + +++L N+G R T +V P+D + R + A Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 VI V V + L++ ++ T EA + ++ +G V + Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-V 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQAKR 248 >gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34] Length = 241 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ + R + ++ V WP E + S A A ++ + ++ EA+ Sbjct: 30 PNNVSAIIRTADAVGVHKVHAV-----WPKENMKVLSHTSAGARNWVE-LDTHDSMVEAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T +++ + AI + + + +I G E+ G+T E +A+++ Sbjct: 84 Q--------TLKDQGMQVLATNLSDTAIDFRD-VDYTKPTAVILGGEKNGITAEALAMAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + ++ P Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179 >gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica DFL-43] Length = 300 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV 73 V+IL N+G + R+ F LV + P E +++ A +ID + V Sbjct: 149 VVILDQVTDPHNVGAIMRSAVAFGAG--ALVTTQRHSPQESGVLAKAASGALEMIDHIEV 206 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL AI D+ TT + S + E G + ++ G E GL Sbjct: 207 -RNLASAIEDIKAQGFTTVGLDSEGPSPI----------EAGLKGARIAMVLGAEGKGLR 255 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + + SLN+S A + ++ + Sbjct: 256 QKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQ 292 >gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 21/160 (13%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ + + + + + +++ N Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +AI+DL +Y TT +++ QN + G E+WGL Sbjct: 81 TIKAISDLKNKGFKLYGTTLNSKSVDYRNFD-------------YSQNTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +NE I++ + I P+ + SLN+S A ++++E + Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167 >gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH] Length = 227 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 35/220 (15%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADC 66 L N ++L D +N R + L+ + ++ + + + ++ Sbjct: 37 LNNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKWID 96 Query: 67 VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +I V F NL N +K V + + E + I Sbjct: 97 IIKYKCVKAAFDNL----------------KGNGYKIVATSLDNKAISLEDFPIDAKLAI 140 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 FG E GL++ + ++ + P+ S N+S AV ++ + + SS + + ++ Sbjct: 141 FFGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSVAVAIVFYSLISRLKKSSIRYLLDE 200 Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223 + E + + Y+R + K + +++L Sbjct: 201 D---------------EKLVLKLDYYRKIIKNYQAIEELK 225 >gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM 14977] gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM 14977] Length = 258 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 14/170 (8%) Query: 5 APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A +L++ P +LV + + N+G + R+ + +V + +S Sbjct: 98 ARRLEDLPTRPRRVLVAVEIEKPGNLGAMLRSADASGADAVLVVGEAVDPENPNVIRAST 157 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 L A D A A R ++A A + Sbjct: 158 G---------TVFTLPLAAVDHD---AARAWLRERGLQIVAAAPRARRVYWEADLSGPTA 205 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL + ++ + P+ + SLN S + L+++E + Sbjct: 206 FVVGAEDRGLPPGWLEAADLAVRIPMEGVADSLNASVSAALLLYEGLRRQ 255 >gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 243 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + +IS P+ SLN+S A + ++E + I Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRI 243 >gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN] gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae] gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923] Length = 259 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 21/176 (11%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL----RLVNPRDGWPSEKA 57 T + + V+ V+ N G V R + V+P +G Sbjct: 96 TTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYTVDPYNG------ 149 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + ++A + V ++ +A YA R VLA + Sbjct: 150 KCLRSSAGSIFSITVVVAS--DA-------YAAVTELRAAGLQVLATMVDGETSLDEAKP 200 Query: 118 --GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ +FG E GL+ E ++ + P+ SLN++ + +++ Sbjct: 201 LLGKPTAWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSRA 256 >gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217] Length = 268 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%) Query: 10 NSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + K P+I++ + P+ NIG + R + L NPR + SS + Sbjct: 113 DLPKNPLIMVAEAPEKPGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVGGLFTV 172 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + +E I L + ++ + E+ ++ G E Sbjct: 173 PVAT--GSTQEVIDFL----------KQKNIAIYTAILQEAISYEKQDFTTASALVVGTE 220 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ A + I P+ S+N+S A ++++E Sbjct: 221 ADGLSEAWRAAAKQNIIIPMQGRLDSMNVSVAAAILIFEARRQR 264 >gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM 12168] Length = 250 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ F + + + P D S + + ++ VRV+ +++ A+ Sbjct: 113 NLGAIVRSAAFFGIRNIVI--PLDEAQSSVTTSSYRVAQGG---MEYVRVY-SVRSAVRL 166 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + R + + AP L G+ ++ G E G++ + + Sbjct: 167 LQDMSGKMVRFGTDVRGA-APVSNMARLRA----GKAALVVLGNEEAGISPLIRENCDHL 221 Query: 144 ISFPV-NPLFPSLNISQAVLLMVWECME 170 I P N SLN++QA ++++E + Sbjct: 222 IIIPAVNAAVESLNVAQAASIILYELAK 249 >gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 256 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 20/164 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + PV++L +P+ N G V R F T + D W R + + Sbjct: 112 RTPRAAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 166 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L+ A + L + + + + FG E Sbjct: 167 HFATAVERLEVA---------------DLPPGPLFALDPEGDDIRGLKLPDDAVLAFGSE 211 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 R GL+ A ++ ++S P+ P S N++ +V + ++ S Sbjct: 212 RSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLYHWSAGS 255 >gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans OS217] gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] Length = 233 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 18/152 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R+ + Q+ V WP R +++ + + +++ + +EA Sbjct: 32 NIAAVIRSADCVGIHQIHAV-----WPDIDMRVSGNTASGSQQWVKTIKHYR-FEEAEQ- 84 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 A N N + + V I + I+ G ER G + E IA ++ Sbjct: 85 --------AFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAAASQH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I P+ + SLN+S A L+++E ++ Sbjct: 137 ILIPMIGMVQSLNVSVAAALVMYEAQRQRQLA 168 >gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf. prausnitzii KLE1255] Length = 275 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 17/149 (11%) Query: 27 NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79 N+G + R A N LV P P +A S + ++ + + Sbjct: 134 NVGAIFRSAAALNM---DAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 IA LH + TA + +SV + + + + + I+ G E GL + IA Sbjct: 191 GIAQLHSLGFKTAAMALSDRSV-------SIDDSALSAEPKLAIVLGTEGDGLAHSTIAA 243 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + P++ SLN++ A + W+ Sbjct: 244 CDYTVKIPMSHGVDSLNVAAASAVAFWQL 272 >gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296] Length = 292 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 12/145 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ N+ LV PR P ++ S + R L+ ADL Sbjct: 155 NVGAIFRSAAALNV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWAR----LESWPADLQ 209 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 T + LA +E ++ L E + + +I G E GL+ +A + + Sbjct: 210 -----TLHELGFKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTV 264 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P++ SLN++ A + WE Sbjct: 265 MIPMSHGVDSLNVAAASAVAFWETR 289 >gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia thailandensis TXDOH] Length = 262 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 A L ++L Q N+G + R+ + Q P + S K S+ Sbjct: 104 ASALPERVSDTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 162 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++D + ++ A T R L A + + +G V Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E G++ + ++ P SLN++ A + ++E Sbjct: 209 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262 >gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium nitrogenifigens DSM 19370] Length = 304 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 13/144 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75 +IL N+G + R F++ + + R P + +++ A V+ VRV Sbjct: 139 VILDQVTDPHNVGAILRTCAAFDVAAM-ITQDRHAPPESGTLAKAASGALEVVPWVRVV- 196 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ + + + E + +G V ++ G E GL + Sbjct: 197 NLSRALE---------SIAEAGYWRIALDGEGKAEFPSALPTG-PVALVLGAEGEGLRHN 246 Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159 + +++ P++ SLN+S Sbjct: 247 VLQHCDSVARLPISRAIESLNVSN 270 >gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N++ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275] Length = 244 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 12/161 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + R + +SA A + +V + Sbjct: 96 IIILDEITDPHNLGSIIRTADAVGAHAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTN 155 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I T + + A V ++ +G +G++ G E +G++ Sbjct: 156 -----------IVNTIKMLKEEGLWIAAADMDGGVFYKQDLTG-PLGLVVGSEGFGISRL 203 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++S P+ SLN S A ++++E Sbjct: 204 VKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQRTSGK 244 >gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. WH 5701] Length = 547 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 15/165 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ L L R+ + +A A + RV NL +I L Sbjct: 284 PHNLGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVV-NLNRSIEQL 342 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++ V +E + L E G V ++ G E GL+ + +I Sbjct: 343 ---------KDAGYRVVGLAEEGNVSLMEADLDGPLV-VVTGSEAQGLSMLTRKHCDQLI 392 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 P+ PSLN S A L+++E + + N PA + Sbjct: 393 RIPLRGATPSLNASVATALLLYEIARRGWMKNISG----NAPAPR 433 >gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 240 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 21/152 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F Q+ + ++K ++ A + NLK+AI Sbjct: 106 QDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGA--LFQMNVCVMNLKDAIV 163 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +Y T R+ E + + G E G+ +E + Sbjct: 164 FLKHQGVDVYGTCLRD--------------ASSIETYQVKDKMAFVMGNEGQGVCDEILE 209 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + P+ SLN+ A + ++ + Sbjct: 210 LCQHRLYIPI-QTVESLNVGIASAITMYHFQK 240 >gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G V R+ + LV + K ++ + + V + + A DL Sbjct: 156 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 212 Query: 85 -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + A V P +L R + ++FG E GLT E + Sbjct: 213 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 268 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165 +S P+ SLN+ + +M+ Sbjct: 269 CAMSVSIPIYGKAESLNLGTSAAVML 294 >gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN] gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN] Length = 168 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 19/170 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 I+L +P N G +AR L L+ P +K + D V+V Sbjct: 5 IVLFEPLFPANTGNIARTCA--GTDTVLHLIKPLGFSTDDKHMKRA--GLDYWDKVKVVY 60 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + + ++ V E + +G + +FG+E GL Sbjct: 61 HDDLVAFLDSIDL---------DHLYIVSKFAERDYSEVDYTIAGDHY-FLFGKETTGLP 110 Query: 134 NEEIALS-NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + I P + +LN+S ++++E + + V Sbjct: 111 EGFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVH 160 >gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D] gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12D] Length = 250 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 21/171 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70 +++L N+G R ++ P+D + ++ A + Sbjct: 95 TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T + A + + I+ G Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPIAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E G+ +A++S P+ SLN+S A + ++E + + K Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAK 249 >gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi] gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi] Length = 307 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 46/218 (21%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVID------ 69 +L D Q +N+ + R + F + L +++ D +K ++ + A I+ Sbjct: 51 VLEDVQSSQNVSAIIRTVECFGMNDLHIISNPDSMSDKKGISKGVAKGATDWINIKQYQN 110 Query: 70 SVRVFSNLKEAIADLHFIYATTA---------------------------RNRNNFKSVL 102 S F LKE + I T+ R+ + V Sbjct: 111 SDECFKELKEK-HNCRIIV-TSPYSIPQLVLGQKRNSWREDQHPSVYNNLRDEITERHVR 168 Query: 103 APKEAAIV------LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 P I LN + + ++FG E G++N I ++A ++ P+ S N Sbjct: 169 VPHYIGIENVPIDLLNSDNDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGFTESFN 228 Query: 157 ISQAVLLMVW---ECMENSIVSSEKNVKEQNTPATKGE 191 + + L + E N + +SE + + E Sbjct: 229 VHVSTALTTYYLNEKFRNYLKNSETKSLAEKYMLSPEE 266 >gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia kristensenii ATCC 33638] Length = 365 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 12/152 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 226 PHNLGGIMRTCAHFGINGVLLQDPAVLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 283 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 284 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 333 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S SLN+S A +++ E + + Sbjct: 334 SIGGTGKVESLNVSVATGILLAEWWRQNTLRP 365 >gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis C-1013-b] Length = 232 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 17/172 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T + +L K V++L Q N G + R+ F + + + + +E SS Sbjct: 75 TAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSS 134 Query: 62 ANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A +D V+V + + + +Y A +N + P Sbjct: 135 TGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYP-------------- 180 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ G E G+ + + I+ + SLN+S A +++ E + Sbjct: 181 EKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIILSEMSK 232 >gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31] gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31] Length = 278 Score = 58.9 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 11/164 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L A+G +++L +NIG + R+ F + L + + ++ A Sbjct: 117 DLGTPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVD 176 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 I RV NL A+ +L + +A A +++ G+ ++ G Sbjct: 177 KIAYARVV-NLSRALEELA----------DLGWRAVALAGEAQQTLDQVLDGRPTVLVLG 225 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ +A+ + F SLN+S A + ++E + Sbjct: 226 SEGEGVRRLVSEHCDAMGKIAMPGGFESLNVSAAAAVALYEASK 269 >gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564] Length = 242 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P++ SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNRL 242 >gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 243 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L + P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + G + Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 243 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +RV + + N V EA L + +G + ++ Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 195 MGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 255 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 94 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 197 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254 >gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 29/171 (16%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P AP LQ P ++L Q N+G + R+ F Q+ + G S K + Sbjct: 103 APEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAG 160 Query: 62 ANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A + + L + D+ + AT++ + P Sbjct: 161 MGAHFALH---LVEGLS--VDDIDTLRLPLLATSSHGGDLLHRACLPW------------ 203 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G I G E G++ + +I P SLN+ A + + Sbjct: 204 --PCGWILGHEGQGVSEALQQRATHLIRIAQPGGEE--SLNVGAAAAICLH 250 >gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945] Length = 250 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 262 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 21/164 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71 V++L N+G R +V P+D A + ++ A + + Sbjct: 113 PLVLVLDGVTDPHNLGACLRVAD--GAGACAVVAPKDHAVGLNATVAKVASGAAETVPYL 170 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + +L E + T+ + K++ V ++ G E Sbjct: 171 MVTNLARSLGEMKERDIRVIGTS---DDATKTIYDVDLRGP-----------VALVLGAE 216 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + ++ P+ SLN+S A + ++E + Sbjct: 217 GHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLYEALRQR 260 >gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica ATCC 23970] Length = 261 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 157 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + ++E +I T ++ P + Sbjct: 158 AETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYHCNLPD--------------SA 203 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ +EK Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260 >gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens] Length = 241 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 17/187 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R+ + +++ +K R S + +D ++SN + I Sbjct: 64 GNVSAVCRSADALGFQSVHVISNETKKRYKKNRKVSMGTEKWLD-AELWSNTSDCID--- 119 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T R R +V + + + + FG E G + E I S+ Sbjct: 120 -----TLRQRGYRIAVTHIAPDTVSIYDM-DWTIPTAVFFGNEFMGASEEAIKQSDVRCC 173 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY------- 198 P+ + S NIS A +++ + I+ S + E L + Sbjct: 174 IPMAGMVESFNISVAAGIIMHHAARDRIIRSGVHGDISPEDRRILEAEFCLRHNRHTVPL 233 Query: 199 LEISLEE 205 L+ LE+ Sbjct: 234 LDRLLEK 240 >gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205] Length = 307 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 15/171 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P A L +A+ V+IL D N+G + RA+ + L++P P ++ S Sbjct: 145 PTATDLLATARR-VVILEDVNNHTNLGSIFRAVAGLGV-DAVLLSPTCADPLYRRSVRVS 202 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN- 120 + + +A+A++ R L P A+ + +R+ GQ Sbjct: 203 MGEVFAVPYAMLGP-WPDALAEV--------RAAGFTVLALTPAPDAVPI-QRLEPGQRS 252 Query: 121 -VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E GLT E + S+ + P+ SLN++ A + WE Sbjct: 253 RAALLLGAEGSGLTREAMEASDVRVVIPMRRGVDSLNVAAATAVACWELGR 303 >gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus italicus DSM 15952] Length = 278 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + + N G + R + + + R + +S A + RV +N Sbjct: 128 IILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIARV-TN 186 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ L + + T A N++S + +I G E G+ Sbjct: 187 LSQAVQTLKERGFWTFGT-AMEGTNYRSWNT--------------QGAIALIIGNEGRGM 231 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +++ P+ SLN S A L+++E Sbjct: 232 SEGLKKSVDELLTIPMVGHVQSLNASVAAGLLMYEAFMQR 271 >gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003] Length = 262 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 16/171 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 L + I+L Q N+G + R+ + Q P + S K S A Sbjct: 106 PLPETVGQTCIVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ ++ ++ A T R V+ A + + SG+ + +F Sbjct: 165 FLL---QIHEDVD----------AQTLIERLAVPVVITDSHGAEAIYDCDLSGE-LAWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G++ + ++ P SLN++ A + ++E +S Sbjct: 211 GNEGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQRRAAS 261 >gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis HAW-EB3] Length = 231 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 18/162 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R + Q+ WP R +++ + + ++R ++ EA Sbjct: 32 NIAAVIRTADAVGIHQVH-----AIWPDLDMRVSGNTASGSQQWVKTIR-HDHMDEAQTQ 85 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R + E A+ E I + II G ER G++ E IA ++ Sbjct: 86 F--------RAQGMQILATNFSEDAVDFRE-IDYTRPTAIILGNERDGVSPEGIAAADQH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 I P+ + SLN+S A L+++E + + + Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQREAAGMYGQRRLDE 178 >gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae SP23-BS72] Length = 169 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 15 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 74 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 75 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 119 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 120 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 169 >gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus K5030] gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 10329] Length = 227 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP +SA A ++ V ++++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178 >gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 223 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ + + + + + +++ N Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 AI+DL +Y TT + + QN + G E+WGL Sbjct: 81 TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +NE I++ + I P+ + SLN+S A ++++E + Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167 >gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320] gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320] gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 21/152 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80 N+G + R+ +F + +++P A R++ A+ + ID+ L++ Sbjct: 229 PHNVGAIMRSCAHFGVKG--VISPDSSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQF 286 Query: 81 I-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A + TT+ ++ + + + + +I G+E+ GL++ + Sbjct: 287 KQAGYTLV--TTSSHKGSVP------------LAKAQLPEKMVLILGQEKDGLSDSTLKQ 332 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I SLN+S A +++ E Sbjct: 333 GDMSIYIGGTGHIESLNVSVASGVLLAEWWRQ 364 >gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. AS9601] Length = 223 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ + + + + + +++ N Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 AI+DL +Y TT + + QN + G E+WGL Sbjct: 81 TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +NE I++ + I P+ + SLN+S A ++++E + Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167 >gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + A+ + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + G + ++ G E G+ Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 247 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 17/155 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + + R + +S A I RV + Sbjct: 100 LDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAR 159 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + E +I T A+ +++ R +G++ G E G+ Sbjct: 160 TIDELKEKGVWIAGTDAKGSEDYR--------------RFDGTMPLGLVIGSEGKGMGRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I P+ SLN S A L+++E Sbjct: 206 IRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYR 240 >gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 227 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82 N+ + R L ++ WP +SA A ++ V ++++ AI Sbjct: 30 PNNVSAIIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178 >gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254] gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254] Length = 157 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 39/170 (22%) Query: 17 IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L++P++ N G + R N T+L L+ P +K + V++F Sbjct: 7 IVLLNPEIHVNTGNIGRTCVLTN---TKLHLIKPLGFELDDKKIKRA--GLDYWKDVQLF 61 Query: 75 ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 N++ ++ +ATT + + N I+ Sbjct: 62 VWENWEHFWQENIEN--SNAKIYFATTKTKQRYT---------------DVKFNDNDYIM 104 Query: 125 FGRERWGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FG E G+ E + SN I+ P+ PL SLN+S AV ++++E + Sbjct: 105 FGPESRGIPEEILNKYKESN--ITIPMLPLGRSLNLSNAVAIVLFEALRQ 152 >gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116] Length = 227 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VDTHDSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYEREESALP 178 >gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus AQ3810] Length = 231 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP +SA A ++ V ++++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L++ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178 >gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826] gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus 13826] Length = 226 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 24/153 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L NIG +AR+ + L +V + SS+ A I +F + Sbjct: 87 VLYGISDVGNIGAIARSAYALGCEGLVIV--TKSVNMQGVLRSSSGAAYEIPIA-IFEDG 143 Query: 77 ---LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L E + F +YAT + + E F+G+ ++ G E G+ Sbjct: 144 LSLLNE-LKQCGFRLYATAS--------------NGKNIKEMKFAGKR-ALVMGSEGEGI 187 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + +A + + + + SLN+S A ++ Sbjct: 188 PQKALAKCDECVGIKLKDGWDSLNVSAAFAIIC 220 >gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisB5] Length = 150 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 25/164 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I L P + +N G + R NL + ++ P S++ + +D V + Sbjct: 2 RIALYQPDIPQNTGTLLRFCACLNL-EAHIIEPAGFPTSDRHFRRA--GMDYLDQVTILR 58 Query: 74 FSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + AD I TT L + + + ++ GRE Sbjct: 59 HDSWSKFVQWRKEADCRVILLTT----KGVTPYLEQRYQSTDV-----------LLLGRE 103 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ +E A ++A + P+ P SLN++ A L+V E + + Sbjct: 104 SAGVPDEVAAAADARVLIPMQPKMRSLNVAMAAALVVGEALRQT 147 >gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus A6] Length = 269 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 16/147 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R+ ++ LV+PR G P ++ S + R+ S +L + + Sbjct: 132 NVGAIFRSAAALDI-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPQDL-QVLK 189 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A +R+ ++ G E G++ E +A + Sbjct: 190 DHGFTVA----ALELTGDARDVDAVAATNPDRL------ALVLGTEGAGMSPETLAAVDL 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 + P+ SLN++ A + WE Sbjct: 240 AVKIPMRNGVDSLNVAAASAVAFWELR 266 >gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 247 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + + R + +S A I VRV + Sbjct: 100 LDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMAR 159 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + E +I T A+ + +F+ + +G++ G E G+ Sbjct: 160 TIDELKERGVWIAGTDAKGKQDFRQM--------------DGTMPLGLVIGSEGKGMGRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +I+ P+ SLN S A L+++E Sbjct: 206 IRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240 >gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02] gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18] gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140] gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1] gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679] gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae 35/02] gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria gonorrhoeae SK-92-679] Length = 250 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R + ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P + Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + ++S P+ S+N+S + +++ E ++ ++K Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249 >gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4] Length = 246 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 17/149 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R + + R + +S A I RV + + E Sbjct: 105 PHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELK 164 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ++ T A+ + +++ + + + ++ G E G++ + Sbjct: 165 ERGIWVTGTDAKGKQDYRQM--------------DASMPLCLVIGSEGKGMSRLVKEKCD 210 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P+ SLN S A L+++E Sbjct: 211 FLVQLPMRGHVTSLNASVAASLLLYEVHR 239 >gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 273 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 20/157 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R+ + + + + A SS + V ++ E I Sbjct: 129 EKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSSTG--VLFSMPTVTASSDEVIK 186 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + ATT L + I+ G E++GL+ + ++ Sbjct: 187 WIRQKGIRTIATT--------PHTDILYTDTDLR------GPLAIVMGSEQFGLSEKWLS 232 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + P+ SLN++ A L+ ++E + Sbjct: 233 ACDTKVLIPMAGQADSLNVAMATLITLFEAVRQRPSP 269 >gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens TC1] gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter aurescens TC1] Length = 330 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 23/170 (13%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANADC 66 P+ + L N+G + R++ F +V P R + A +SA A Sbjct: 177 NAPIFVALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAAV 231 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125 + R +NL A+ +N VL V L + + + V I+ Sbjct: 232 RVPVAR-AANLNNALKQF----------KNMGIYVLGLDGDGDVSLPDLTVATEPVCIVV 280 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL+ + I+S P++ SLN S AV + ++E V Sbjct: 281 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRAVK 330 >gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria IOP40-10] Length = 260 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 18/169 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 L ++L Q N+G + R+ + P + S K S A Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163 Query: 65 DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ + +++ +A+A V V Sbjct: 164 HFLLS---IHEDVEPDALAG------------RLDVPVALTDSHGTQAVYDCDLAGPVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301] gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301] Length = 261 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 19/155 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L S KA A V+ V + + E Sbjct: 122 QDPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDN 181 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 YAT + + L Q + G E GL + IA ++ Sbjct: 182 FNGNSYATAMHGESLYAQDLT---------------QATAFVIGNEGAGLRKQTIAAADK 226 Query: 143 IISFPVNPLFP----SLNISQAVLLMVWECMENSI 173 I+ P+ SLN A + ++E ++ Sbjct: 227 SITIPMTESQFGSVESLNAGAAAAICLFERKRQAL 261 >gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi E3_33 E1] Length = 278 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 29/180 (16%) Query: 8 LQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L A GP ++ L Q N+G V R + LV P+D + +SA Sbjct: 117 LDQLAGGPALVILLDRCQDPHNLGSVIRTAEAAGASA-VLV-PKDRSVRLTGTVVKASAG 174 Query: 64 AD------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A V++ R +LKEA ++ + ++ Sbjct: 175 AALRFPVISVVNVKRALDDLKEA---GFWVVGLAGESSEP--------------LGKLAW 217 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 Q + G E GL + + P++ SLN A L +E S + Sbjct: 218 DQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYEWARRFHFSGD 277 >gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 280 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 3/151 (1%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + + N G V RA + L S K S+A + + V L Sbjct: 124 VLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTGVP-L 182 Query: 78 KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNE 135 + +A L T A + + + A E + + +FG E WGLT + Sbjct: 183 DQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGLTED 242 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E L++A++ P+ L SLN++ A + ++ Sbjct: 243 ERGLADAVVRVPIRGLAESLNLATAATVCLY 273 >gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1] gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1] Length = 177 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L S + P ++L P++ +N G + R +L +V P EK + D Sbjct: 17 SLPLSVQPPAHVVLYQPEIPQNTGNIGRTCVAVG-AKLWIVEPASFQFDEKRLRRA-GLD 74 Query: 66 CV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + L E R N + + A Sbjct: 75 YWQYLDWEPVPSWDALCE---------------RLNPERFFFFSKFAKRTVWEAEFALGD 119 Query: 122 GIIFGRERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++FGRE GL + + + P+ SLN+S + ++E +I Sbjct: 120 VLVFGRETSGLPASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTI 172 >gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32] Length = 268 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151 R R + P+ +I L R + V ++FG E GLT +A ++ + P+ Sbjct: 188 RARGFAVAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAG 247 Query: 152 FPSLNISQAVLLMVWECMEN 171 SLNI+ A + +E Sbjct: 248 VDSLNIATAAAVAFYELARG 267 >gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 278 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 11/174 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 Q A ++IL Q N+G + RA +T + + + + K S+ + Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V +L A+ R + + A ++ + G + G Sbjct: 176 VPFV-YVEDLAGAVR----------RVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGN 224 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E GL++E L++A I P+ SLN + A ++++E + Sbjct: 225 EANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGHKID 278 >gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae 342] gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55] Length = 243 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V + R L+EA +I T A + Sbjct: 146 AENVPLIRVTNLARTMRLLQEA---NVWIVGTAG--------------EADHTLFQSKMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 252 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 17/148 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + NIG + R F + + L + S K S+ + I +V+S++ + Sbjct: 122 KDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRSTMAS---IFRTKVYSDIN--LM 176 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D+ RN FK + A + E+ + ++ G E G++ E + + + Sbjct: 177 DI----------RNGFKIICA-DLKGKNIREKTDWDDTI-VVIGSEAQGVSKEILEICDE 224 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 + P++ SLN + A L ++E + Sbjct: 225 AVLIPMDKNIDSLNAAVAASLFMYEMTK 252 >gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 314 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 16/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L N+G V R+ F + + R + A +SA A + RV + Sbjct: 167 IVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAGAAARVPVARVTN 226 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE + + A + + L V ++ G E GL Sbjct: 227 LTRTLKELQEEGLMVIGLAA-------------DGDVELPSSQMLDGPVVVVIGSEGKGL 273 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++S P++ SLN A + ++ Sbjct: 274 SRLVGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQR 313 >gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 279 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 33/173 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 I L + N+G + R + L+ S + ++ + Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPETVRATMGSIFSVPLYRFSES 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ F I T + +++SV + ++ Sbjct: 188 AFLNWSTHFK---------GIIIGTHLKTSVDYRSVD-------------LKKGPIILLM 225 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E+ GL + + ++ P N SLN++ A +M++E + Sbjct: 226 GNEQQGLPDVLADRCDQLVRIPQNGRADSLNLAIATAVMLYEIRRPYLTLEPT 278 >gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70 +++L N+G R ++ P+D + ++ A + Sbjct: 95 TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T + A + I+ G Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPTAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E G+ +A++S P+ SLN+S A + ++E + + K Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAK 249 >gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 294 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 64/175 (36%), Gaps = 19/175 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ I L + N+G V R + L+ S + ++ + Sbjct: 132 LKPKNNDVYIALDRVRDPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFS 191 Query: 68 IDSVRVFSNLKEAI---ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +V + + D+ + T + +++++ ++ + V + Sbjct: 192 MPLYKVTE--ADFLNWRKDISGLVVGTHLKGAVDYRTI-------------PYANKPVVL 236 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+ GL + + + P SLN++ A +M++E +++ E+ Sbjct: 237 MMGNEQQGLPDSLADTCDKLARIPQAGRADSLNLAIATGVMLYEIRRDALTLDER 291 >gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14] gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14] Length = 241 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 34/173 (19%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V P++G + +SA A ++ + ++ EA+ L Sbjct: 30 PNNVSAIIRTADAVGVHKVHAVWPKEGM--KVLSHTSAGARNWVE-LDTHDSMVEAVQAL 86 Query: 85 H----FIYAT----TA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + AT TA R+ + K II G E+ G+T Sbjct: 87 KDQGMQVLATNLSDTAIDFRDVDYTKP--------------------TAIILGGEKNGIT 126 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E +A+++ I P+ + SLN+S A L+++E + ++ P Sbjct: 127 AEALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179 >gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium narugense DSM 14796] Length = 244 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 26/153 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVN----PRDGWPS--EKARSSSANADCVIDSVRVF--SNLK 78 NIG VAR LV P+ A +S + + S+ V SNL+ Sbjct: 105 NIGAVARTAQASG-----LVGGIILPKHRSLDITPAAIKASTGS---LLSIPVVRLSNLR 156 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + DL + SV+ ++ V + + + +FG E L++ + Sbjct: 157 YFVKDL----------KRRGVSVIGVEKRGSVRYDMLKYDLPICCVFGSESKSLSDVFLR 206 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P++ F SLN+S A ++++E Sbjct: 207 DLDQNVYIPMSNDFNSLNLSVASSILLYEIFRQ 239 >gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea F0287] Length = 220 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82 N V R F + Q + R G + + A +D R + A Sbjct: 43 HNTSAVVRTCEVFGVQQAHSIEGRFGKRIDAKIAM--GAQKWVDVFRYNDTQSCIDALRA 100 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I ATT P + A LN+ S + FG E+ GL+ + ++ ++ Sbjct: 101 QGYQIVATT------------PHKDAYFLNDFDIS-KKSAFFFGTEKEGLSQQVLSQADT 147 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 + P+ SLNIS AV +++ Sbjct: 148 YLKIPMVGFTESLNISVAVAIVL 170 >gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 185 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 24/183 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71 I+L +P++ +N G +AR N L L+ P +K +A + + Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAALDYGGEV---EI 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129 R +L+ + A +N + L K A + ++ +FGRE Sbjct: 59 RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL + ++ + P++ + N+S + ++++E + + Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168 Query: 189 KGE 191 K + Sbjct: 169 KDD 171 >gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74] Length = 176 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 14/147 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAIAD 83 N+G V R F +L L P ++ A + V + AD Sbjct: 39 NVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAWEHVTDVTALVKQLQAD 98 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + A + + + +P+ + + G E G+ +E I ++ + Sbjct: 99 GWLVAAVEQADGSTSLADFSPE-----------PNKPYAFVLGNEVTGVCDEVIQAADLV 147 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170 + P SLNI+ ++ W+ ++ Sbjct: 148 LEIPQFGTKHSLNIAVTAGIICWDFLQ 174 >gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 243 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + A+ + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + G + ++ G E G+ Sbjct: 157 ----------LARTMRMLREENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + A+ + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + G + ++ G E G+ Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium NaphS2] gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium NaphS2] Length = 160 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 19/167 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLR--LVNPRDGWPSEKARSSSANADCVID-SVRV 73 ++L P++ N G +AR QLR L++P +K + D D V+ Sbjct: 10 VVLYQPEIPANTGNIARLC---GAAQLRLHLIHPLGFSVDDKHLKRA-GLDYWPDIDVQH 65 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N + +H N + + A + + + ++FGRE GL Sbjct: 66 HANFDAFLDGMH----------ENARLFCFSR-HASTVYPQAKVNRGDYLLFGRETLGLP 114 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 EI + P+ SLN+S V ++ + + + N Sbjct: 115 -LEIRNAYPCYRVPIWGKVRSLNLSTTVGIVSYHYLHEMGLFGAPNA 160 >gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola At-22] Length = 243 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P ++IL N+G R+ + + + R + A+ + A Sbjct: 86 PDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145 Query: 65 DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V + R L+EA +I T A + Sbjct: 146 AENVPLIRVTNLARTMRLLQEA---NVWIVGTAG--------------EADHTLFQSKMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 264 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV++L +P+ N+G V R F T + D W R+ + + Sbjct: 111 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 165 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L + L + + + ++FG ER Sbjct: 166 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 210 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G++ E A + ++S P+ P S N++ +V + ++ + E Sbjct: 211 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 264 >gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 248 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 96 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + + +I+ T P + + + ++ Sbjct: 156 PIARVTNLSQTLDKLKSRGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247 >gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 268 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ N + + V N G + R + K +SA Sbjct: 109 SAGKILNGKPKLISVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAG 168 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + R N+K+ + L R + ++A V Q Sbjct: 169 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVELADADLSQPTAW 217 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GL E + ++ + P+ SLN++ A + ++E + Sbjct: 218 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 265 >gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme DSM 15981] Length = 275 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 22/174 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARS 59 P + A+ +L + NIG + R A N L+ P P +A Sbjct: 111 PAVEAVCRGARRIA-VLENVMNPTNIGAIFRSAAALNM---DAVLLTPACSNPLYRRAIR 166 Query: 60 SSANADC-----VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 S ++ + E ++ L F A A + + + + P+ A Sbjct: 167 VSMGTVFQVPWTFLEGTEWPQHGMELLSGLGFKTAAMALSDESVR-IDDPRLMAED---- 221 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + +I G E GL E IA + + P+ SLN++ A + W+ Sbjct: 222 -----RLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSLNVAAASAVAFWQL 270 >gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 159 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 24/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-------ANADCVID 69 I L +P++ N G + R N L L+ P EK + A+ D Sbjct: 4 IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKD 62 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L+ H I+A + + ++FG E Sbjct: 63 YAAFLDYLENESEGEHRIFAC--------------TTKTTGHHTTPSYQKGDVLLFGPET 108 Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL E I + P+ SLN+S +V ++V+E Sbjct: 109 RGLPAELIEGLPMEQRVRIPMMADSRSLNLSNSVAIIVFEAWRQ 152 >gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 257 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + + +I+ T P + + + ++ Sbjct: 165 PIARVTNLSQTLDKLKSRGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 209 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +I+ P+N SLN S A ++++E N Sbjct: 210 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 316 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 12/163 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+L ++ L N+G + R++ F + + R + A +SA A Sbjct: 159 PELPGI--PLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 I + +NL + D R F L E + L + + + + I+ Sbjct: 217 ARIPVAQ-CTNLTRTLEDY--------RKAGFFVIGLDM-EGDVELPDLELANEPIVIVV 266 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E GL+ + I+S P++ SLN A + ++E Sbjct: 267 GSEGKGLSRLVRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309 >gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245] Length = 219 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 33/222 (14%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L +++ + N+ + R+ + ++ V+ R + R ++A Sbjct: 14 LLRRQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFT---RHNAAAGSSK 70 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFG 126 ++ ++ +++ R R++ VLA ++ I +I G Sbjct: 71 WVNINLYHDIESVYR----------RLRDDGMQVLAAASTEKSVDFREIDYTLPTALILG 120 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E G++ + I+ ++ I P+ + SLN+S A ++++E ++ Sbjct: 121 AEWDGISEDAISGADRCIGVPMFGMVESLNVSVAGAVIIYEAQRQRLLKGMYGSPAL--- 177 Query: 187 ATKGELLSFL---------DYLEI------SLEERGYFRPVE 213 T+ ++ L ++L L++ G+ E Sbjct: 178 -TQTQMNRLLFEHTYPRLSEHLHEKGIDYPRLDDDGFILSPE 218 >gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 12/162 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + ++ V P++G +SA A ++ + ++ EA+ Sbjct: 30 PNNVSAIIRTADAVGVHKVHAVWPKEGM--RVLSHTSAGARNWVE-LDTHDSMVEAVQ-- 84 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 +++ + AI E + + II G E+ G+T E +++++ I Sbjct: 85 ------ALKDQGMQVLATNLSDTAIDFRE-VDYTKPTAIILGGEKNGITAEALSMADQDI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 P+ + SLN+S A L+++E + ++ P Sbjct: 138 IIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179 >gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13] Length = 147 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 22/152 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLKE 79 N+G + R+ +F + + L +P R++ A+ + D + V ++ Sbjct: 10 PHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRK 69 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A + TT+ ++ + + ++ G+ER GL++ Sbjct: 70 A----GYTIVTTSSHKGTP-------------LAQAKLPSKMVLVLGQERDGLSDSAWQQ 112 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLN+S A +++ + Sbjct: 113 GDMSVSIGGTGKVESLNVSVATGILLADWWRQ 144 >gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans 36D1] Length = 247 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + R + +S A I RV + Sbjct: 97 ILILDELEDPHNLGSILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARV-T 155 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL + IA L +I T A +++ + + + ++ G E G Sbjct: 156 NLSQTIAGLKQQGLWIAGTDASGTTDYRQM--------------DADLPLCLVIGSEGKG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ + +I P+ SLN S A L+++E Sbjct: 202 MSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEVYR 240 >gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 170 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I L +P + N G +AR L L+ P +K + DSV + Sbjct: 5 IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++L++ +A DL+ +Y + +++ V + +G++ +FG+E Sbjct: 61 HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 109 Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL + I P + +LN+S + ++++E + Sbjct: 110 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 153 >gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 251 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 23/176 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + ++IL N+G R+ + +V P+D + + ++ A Sbjct: 93 LADKKDPLLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDHSAPLNATVKKVASGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V +NL + L +I T ++ + Q++ Sbjct: 151 ETVP-LIVVTNLARTLRLLKEHNIWIVGTAG----------DAEQNLYQWKIQ----QSM 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E G+ + +IS P+ SLN+S A + ++E +S+ Sbjct: 196 ALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLFEVTRQRNLSNH 251 >gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 175 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I L +P + N G +AR L L+ P +K + DSV + Sbjct: 10 IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 65 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++L++ +A DL+ +Y + +++ V + +G++ +FG+E Sbjct: 66 HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 114 Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL + I P + +LN+S + ++++E + Sbjct: 115 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 158 >gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1] gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1] gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1] Length = 170 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I L +P + N G +AR L L+ P +K + DSV + Sbjct: 5 IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 60 Query: 74 FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++L++ +A DL+ +Y + +++ V + +G++ +FG+E Sbjct: 61 HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 109 Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL + I P + +LN+S + ++++E + Sbjct: 110 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 153 >gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group] Length = 329 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 24/174 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P P +EKA ++ A + Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 222 Query: 72 RV---FSNLKEAIA--DLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V +S+L +A D+ + ++ N + VL+ L + + S ++V ++ Sbjct: 223 VVSGNWSDLHALMAKPDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 276 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E GL+ E + +++ P+ F SLN+S A + ++ +E+ Sbjct: 277 LGSEGNGLSAETLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 329 >gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58] Length = 266 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 21/178 (11%) Query: 4 YAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + S + PV +I+ + N+G + R + + L +P + S Sbjct: 103 STQEFLASRRNPVPFYLIIEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRS 162 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + + ++L E + + R + V +P+ + E + Sbjct: 163 SLGTVFTLP--VLCASLPEVLQLI--------RKESWEVYVTSPRAKKLYFEETFLA--P 210 Query: 121 VGIIFGRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+FG E+ GL E I+ P+ SLN+S +V + +E + +VS Sbjct: 211 TAIVFGSEKDGLMQPWFHERFK---EITLPMRGKADSLNLSTSVAAIAYEVLRQRMVS 265 >gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria bacilliformis ATCC BAA-1200] Length = 276 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 22/177 (12%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L N + P +++L N+G R + ++ P+D + + A Sbjct: 115 LDNLREPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 172 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L E +I T ++ P +V Sbjct: 173 AETVPYITVTNLARTLCELKEYGIWIIGTDTGGESDLYHTDLPD--------------SV 218 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E G+ + +++ P+ S+N+S + +++ E ++ +E Sbjct: 219 AWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETRRQRVLRAEA 275 >gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 267 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 24/158 (15%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R N+ + + NP+ + SS + + E I Sbjct: 125 PEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GSTTEVI 182 Query: 82 ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L + A TA FK + + I+ G E GLT E Sbjct: 183 DFLKAKGINSYCAALTA-----FKPYY-----------EVSFEEASAIVVGTEDQGLTEE 226 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + S I P+ + S+N+S A ++++E + Sbjct: 227 WLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRV 264 >gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 103 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%) Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 VI + + ++LK + D H I T + VL G+ + ++ Sbjct: 9 EVIRAQKFVASLKR-LRDSHRIVGTALGSGKPVAEVLN------------RPGKPIALLL 55 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E GL +A + I++ P + SLN++ +++ E + Sbjct: 56 GNEEDGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100 >gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5] Length = 266 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 32/175 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G V++L Q N+G + R+ + L + K S+ + + Sbjct: 113 NGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHL---- 168 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---------- 122 L+ + + +E L + GQ Sbjct: 169 --PVLE----------------GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW 210 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ E AL + I P+ SLN + A ++++E + ++E Sbjct: 211 IVIGSEGRGVSPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265 >gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri ATCC 29473] Length = 372 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ + K + L + N+G + R +F + + L +P R++ A+ Sbjct: 216 LQQAPKQDCVLALEEVGNPHNLGAIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEH 275 Query: 67 VID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + F ++ + + + TT+ ++ + + ++ Sbjct: 276 IKAINADDFLSVLDTFRNAGYTIVTTSSHKGTS-------------LSKAELPAKMVLVL 322 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+E GLT+ + +S SLN+S A +++ E + Sbjct: 323 GQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQ 372 >gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis AD011] Length = 292 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G V R+ + LV + K ++ + + V + + A DL Sbjct: 139 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 195 Query: 85 -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + A V P +L R + ++FG E GLT E + Sbjct: 196 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 251 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165 +S P+ SLN+ + +M+ Sbjct: 252 CAMSVSIPIYGKAESLNLGTSAAVML 277 >gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM 16992] Length = 333 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + + R + L A ++ E F + ++ G E Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ ++I P++ + SLN S A + ++ Sbjct: 282 GLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC 51908] Length = 245 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 27/164 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69 IL N+G R + +V PRD + + A V+ + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 158 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +L+E + + A + + +K+ L + I G E Sbjct: 159 LARTMKSLQE--KGVWIVGAAGEADSDLYKTDL---------------KGPLAIAMGAED 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL ++I S P+ SLN+S A + ++E + + Sbjct: 202 KGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEAVRQRL 245 >gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 23/174 (13%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 +L ++ GP ++IL N+G R ++ P+D + A S+ Sbjct: 86 ELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAMKVSS 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + +++ +I T+ +A L E F+G Sbjct: 144 GASDTVPYITVTNLARTMRDLKERGVWIIGTS-------------DDAEKGLYEGDFTG- 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + +++ P+ SLN+S A + ++E + Sbjct: 190 PTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQRL 243 >gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3] Length = 272 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%) Query: 1 MTPYAPQLQNS--AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEK 56 M P L++ + P ++L++ + N+G + R + LV + + Sbjct: 103 MKPKLKALEDFPVKQNPFLLLIESVEKPGNLGALLRTADGSGVDG-VLVLESQIDLYNPN 161 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 SS + + +EA A A A +N Sbjct: 162 VIRSSLGCCFSLPIAMC--SREEAYAFCKERKIAIHAAVLSNASVYYDTVNYPS------ 213 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E GL ++ +N +IS P++ SLN+S A ++++E Sbjct: 214 ----STAILLGSEDKGLDPYWVSHANHLISIPMHGEADSLNVSAAGAVLLYEVSRRR 266 >gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis HN019] gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9] Length = 301 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G V R+ + LV + K ++ + + V + + A DL Sbjct: 148 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 204 Query: 85 -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + A V P +L R + ++FG E GLT E + Sbjct: 205 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 260 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165 +S P+ SLN+ + +M+ Sbjct: 261 CAMSVSIPIYGKAESLNLGTSAAVML 286 >gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified eubacterium SCB49] Length = 248 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 23/176 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 L+ +IL N G + R + +V + G P S A +SA A Sbjct: 90 TLETETTPLFLILDQISDVRNFGAILRTAECTGVHA-VIVQKKGGAPVSGDAVKTSAGAI 148 Query: 66 CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 I ++V ++K+AI + + I AT + + L Sbjct: 149 FNIPIIKV-DHIKDAIFYLQGSGVTTIAATEKSEKTIYDQTLT---------------TP 192 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V I+ G E G++ + L + S PV SLN+S A +++E + I + Sbjct: 193 VAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYEIVRQRITKA 248 >gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 250 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 30/178 (16%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVAR----------AMWNFNLTQLRLVNPRDGWP 53 ++G V++L N+G + R M +D Sbjct: 92 ALEDALEKSRGTVLLLDQVTDPRNVGAILRSAAAFGAAAVVM-------------QDRNA 138 Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 + + + A +D+V V +++ T + + + A L Sbjct: 139 PPETGAMARAAVGALDTVPVV-------REVNLARTITVLQKAGYWVMGLDGTAKTELAA 191 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ G E GL + + ++ P+ P SLN+S A + ++E Sbjct: 192 AKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAAIALYELSRG 249 >gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912] Length = 271 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 26/181 (14%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 M +A + ++ L Q N+G V R +T L P S KA Sbjct: 109 MPGFAVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTG-VLCGEDTADPFSPKAVR 167 Query: 60 SSANADCV--IDSVRVFSNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 SS A I R+ + + E + + R ++ Sbjct: 168 SSMGAAFTVPIRQGRLVNMIGEWHAKGVEPVETAVGEGVRYDRWNWNI------------ 215 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 V I+ G E G++ E L + P+ SLN++ A L+++E + Sbjct: 216 ------PVMIVLGNEGRGISPEVRHLCRGKVHIPMPGGGESLNVAVAAALLLYEARRHRG 269 Query: 174 V 174 Sbjct: 270 A 270 >gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia odorifera DSM 4582] Length = 243 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 24/174 (13%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L S P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + +RV + L+ + +L+ ++ T A + Sbjct: 144 GAAENVPLIRVTNLARTLR-LLQELNVWVVGTAG--------------EADHTLYQSKMT 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +I P+ SLN+S A + ++E + Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena XCL-2] Length = 244 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T L+ + + L + Q N+G + R +T + + + R + Sbjct: 82 TDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTAVVIPKHNSVGVNATVRKVA 141 Query: 62 ANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + V + +KE ++ E L + F G Sbjct: 142 CGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAG-------------ETNTTLYQLDFKG 188 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 VG++ G E GL + + + P+ SLN+S A ++++E + S Sbjct: 189 A-VGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQRLQS 244 >gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S] gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S] Length = 156 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 21/171 (12%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN---PRDGWPSEKARSSSANADCVI 68 A+G I L P++ N+G + R F++ V+ P S+ + A Sbjct: 2 ARGMRIALYQPEIAGNVGAILRLAACFSVP----VDIIMPTGFAFSDAKLKRA--AMDYG 55 Query: 69 DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 S V +N + A R R + ++ A + + ++ G Sbjct: 56 ASADVTRHANFE----------AFDVRRRAEGRRLMLMSSHASQRLPDVEFRADDILLMG 105 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G+ N L++ + P+ P F SLNI+ + + V E + + + Sbjct: 106 SESAGVPNAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156 >gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 169 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 15/167 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75 +L +P++ +N G + R N T+L L+ P G+ ++A A D + +D R++ Sbjct: 5 VLYEPEIPQNTGNMMRTCMATN-TKLHLIQPL-GFSLDEAHLRRAGMDYMKELDY-RLYE 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N + T NN+ + + A + ++ ++ G+E G+ Sbjct: 62 NWDDF---------TKQNPSNNYYYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPKA 112 Query: 136 EIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +A + + P+ SLN+S ++V+E + V+ Sbjct: 113 ILAKQLDHCMRLPMVANARSLNLSNCAAIIVYEVLRQLDYPGLSPVE 159 >gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sputigena Capno] Length = 245 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 23/153 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAIADL 84 N G + R ++ + + P+ G S A +SA A + +V NL +A+ L Sbjct: 110 NFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 166 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + ATT +L ++ + I+ G E G++ + + Sbjct: 167 QGSGIRVVATT----EKTNQLLYAEDFTV----------PTAIVMGAEDVGVSPAVLKVV 212 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ P+ SLN+S A + ++E ++ + Sbjct: 213 DSKAKLPMVGDISSLNVSVACAVFLYEVVKQRL 245 >gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM 16992] Length = 290 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVFSN 76 N G V R+ + + LV+ + K S+A + + D Sbjct: 140 PGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAGSLFHLPILTMGTDDFFAWCDT 199 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ +Y T +R + V+A E ++FG E GLT E Sbjct: 200 HELAVYAAD-VYGTDSRQPESLTDVIAMPETLA---------GAKAVLFGNEARGLTKEV 249 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ I+S P+ SLN+ + +M+ +S V Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSSVMLLSLAMSSHVER 289 >gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group] gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa Japonica Group] gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group] gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group] Length = 340 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 24/174 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P P +EKA ++ A + Sbjct: 180 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 233 Query: 72 RV---FSNLKE--AIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V +S+L A +D+ + ++ N + VL+ L + + S ++V ++ Sbjct: 234 VVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 287 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E GL+ + + +++ P+ F SLN+S A + ++ +E+ Sbjct: 288 LGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 340 >gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida KT2440] Length = 248 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 + +++L N+G R T +V P+D + R + A Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 VI V V + L++ ++ T EA + ++ +G V + Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I G E G+ + ++ P+ SLN+S A + ++E + V Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQVKR 248 >gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group] gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group] Length = 329 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 24/174 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P P +EKA ++ A + Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 222 Query: 72 RV---FSNLKE--AIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V +S+L A +D+ + ++ N + VL+ L + + S ++V ++ Sbjct: 223 VVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 276 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G E GL+ + + +++ P+ F SLN+S A + ++ +E+ Sbjct: 277 LGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 329 >gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 5701] Length = 229 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 62/188 (32%), Gaps = 20/188 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L ++L N+ + R+ + + +V+ + + + + + Sbjct: 15 LDRRMADLTVVLEAVDKPHNLSAILRSCDAVGVLEAHVVSLKGRPRTFNSTAQGSQKWVP 74 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + R ++E + L +Y T + ++ Sbjct: 75 L---RPHERVEEVLGQLKQQGFRLYGT-----QLGTDAVDYRQCDFT--------GPTAF 118 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G E+WGL+ A+ + + P + SLN+S A ++++E + + Sbjct: 119 LLGAEKWGLSEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQRQAEGLVPEAGE 178 Query: 184 NTPATKGE 191 PA E Sbjct: 179 GLPAGARE 186 >gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris FB024-16] gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris FB024-16] Length = 153 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 18/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +I P++ N G R T L +V P + + + ++ + Sbjct: 4 VIFYQPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDFEDTKLKRAGLDYHDLAHLQRHPD 62 Query: 77 LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L + A + IYA T SV ++FG E GL Sbjct: 63 LDDCFAAIPGKIYAFTGHTEVMLPSVHF--------------QDGDALMFGPEDTGLPVP 108 Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + P+ SLN++ + + ++ Sbjct: 109 VMDDPRVTSRVRIPMLEGRRSLNLAISAAVGLY 141 >gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63] Length = 252 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L + + N+G + R + + + R S +SA A + RV + Sbjct: 108 VVVLDEVEDPHNLGAIIRTAECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTN 167 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L E ++Y +E FSG I+ G E G+ Sbjct: 168 IAVTLDELKEKGVWVYG--------------ADMDGTDYDECDFSGA-CAIVIGNEGKGI 212 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + I S P+ SLN S A +++++ M+N Sbjct: 213 SRLVREKCDVIASLPMKGQINSLNASVAAGILMYKAMKNR 252 >gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus SJ] Length = 268 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 14/166 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + ++L + + N+G + R + ++ L + K S+ D Sbjct: 109 KINDEPNPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTDK 168 Query: 67 VIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I S+L +A+ + R ++ A L E + + I+ Sbjct: 169 WIKWSYWESSLDCIDALKE-----------RGASIYAFETEKNAKAL-EEVREIRECAIV 216 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G ER+GL + S+ I+ ++ SLN+ + ++ Sbjct: 217 LGNERYGLNESVLNRSDEILKIRLDGKKNSLNVGTCGAIAMYHMAR 262 >gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145] gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145] Length = 174 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL P++ N G + R + +L ++ P K A ++ ++ Sbjct: 4 IILYQPEICPNTGNIIRTCFALG-AKLHIIKPTSFDLHPK-YLRRYGAGRILSDIQHEIH 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + + + Y T R K+ + V ++FGRE G Sbjct: 62 ASYDDFENKYKNKNIFYIT----RYGLKTY-----TEQNFKKAYDQSGEVWLMFGRESTG 112 Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + N + P+ S+N++ V ++ +E M Sbjct: 113 IDKNILHKNINNCLRIPMVSEMRSINLANCVCIVGFEVMRQ 153 >gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016] gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 256 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + Q N G + R + + + R+ + SSA A + +V + Sbjct: 105 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 164 Query: 76 --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + + +IY N V ++ +I G E G+ Sbjct: 165 LNTIIEKLKKENIWIYGADMTGENYCFDVDF--------------NSSIALIIGSEGKGI 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E ++ I S Sbjct: 211 SKLTKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 254 >gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555] gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555] Length = 280 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + Q N G + R + + + R+ + SSA A + +V + Sbjct: 129 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 188 Query: 76 --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + + +IY N V ++ +I G E G+ Sbjct: 189 LNTIIEKLKKENIWIYGADMTGENYCFDVDF--------------NSSIALIIGSEGKGI 234 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E ++ I S Sbjct: 235 SKLTKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 278 >gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3] gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans Sphe3] Length = 329 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 29/174 (16%) Query: 12 AKGPVII-LVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANAD 65 A P+ + L N+G + R++ F +V P R + A +SA A Sbjct: 175 ANAPLFVALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAA 229 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R SNL A+ F+ + + L + + V Sbjct: 230 VRVPVAR-ASNLNNALKQFKNMGIFVLGLDG-DGDVSLPDLT------------LATEPV 275 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E GL+ + I+S P++ SLN S AV + ++E Sbjct: 276 CIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRAAK 329 >gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5] Length = 243 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 27/183 (14%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKAR 58 + ++ V+I N G +AR+ L + P + +A Sbjct: 80 LADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAHGL--ITPLKNSAPVNAEAI 137 Query: 59 SSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 SSA A I RV L+ + AT E + L Sbjct: 138 RSSAGALTAIPVCRVGSIRNTVKLLQ--TEGFQIVAAT---------------EKSRKLL 180 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G++ E + L + ++ P+ SLN+S A +M++E + Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240 Query: 173 IVS 175 I Sbjct: 241 IAE 243 >gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 264 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 21/174 (12%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP P ++L Q N G + R+ + Q+ S K + Sbjct: 106 TPEMPT-PPRLTQSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAG 164 Query: 62 ANADCVIDSVRVFS--NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A +++ +F +L + + + AT++ A + Sbjct: 165 MGAHFLLE---IFEGVDLSDLLGRADIPVIATSS--------------HAEKQLYELDLR 207 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q V +FG E G+ ++ +A + IS P SLN++ + + +E + Sbjct: 208 QPVAWLFGHEGQGVADDLLARATHRISIPHLGDIESLNVAASSAVCFFEQLRQR 261 >gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 277 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 14/153 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + + N G + RA + + L + K S+ + I V ++L Sbjct: 127 ILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVA-VGADL 185 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTN 134 E ++ AR VLA A L +GQ +FG E GL + Sbjct: 186 PEVVS--------CARAAGLR--VLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPD 235 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E + L + ++ P+ S+N++ A + ++E Sbjct: 236 EWLGLVDRAVAVPIYGRAESMNLATAASVCLYE 268 >gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 263 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G V R + LV S + ++ + + + + + E + Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ATIPEFL--- 184 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A SV+ A V ++ + I+ G E+ GL E A + + Sbjct: 185 -------AWRETWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 237 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 P+ SLN+S A +M++ Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259 >gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD 2210633] gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus Peru-466] gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AN-5034] gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ4037] gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus K5030] Length = 247 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 23/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L +++L N+G R + + + R + + A V Sbjct: 90 LAQHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEV 149 Query: 68 I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + R L+E + + T A + + Sbjct: 150 VPLIRVTNLARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G+ + +I P+ SLN+S A + ++E + + + Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247 >gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202] Length = 318 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 18/173 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q G ++ L N+G + R+ F + + + R + A +SA A Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214 Query: 69 DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV SNL +A+ +A T + V EA + + ++ Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E GL + + S P++ SLN S A + ++E + +SE Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRVSASE 317 >gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 226 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 28/180 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-----IDSVRVFSNLKE 79 N+ V R+ F ++ + L WP +SS + + +D+ + NL Sbjct: 54 PHNVSAVLRSCDAFGVSDVHLYYTTSQWPDLGKKSSGSAMKWIRLIRHVDAATMVGNLVG 113 Query: 80 AIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 H +A R V+ II E G + Sbjct: 114 GGGSAHDGGQILRTGFSATAR----PVMDFDFTIP-----------TAIILSNEHRGTSP 158 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGE 191 E AL + P+ + SLN+S A ++++E + + + + ++ A + E Sbjct: 159 ELAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQRKRAGLYDAPSFSDEELAALRAE 218 >gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 274 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 12/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L S +I+L + N+G + R + + NP + SS Sbjct: 117 DLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSIGC-- 174 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + ++ +E T A ++ + A + A I+ G Sbjct: 175 LFSNPIAVASNEE----------TLAYLKSKSVQIFAAELTAFKQYYNTDFTSASAIVIG 224 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GLTN + ++ I P+ + SLN+S +V ++ +E + Sbjct: 225 AEVNGLTNFWLDNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQR 270 >gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259] Length = 254 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 31/184 (16%) Query: 7 QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62 ++ S +GP ++IL N+G + R+ F ++ P+D A ++ Sbjct: 91 EVLESIEGPPLLVILDGVTDPHNLGAILRSADAFGAH--AVIAPKDNAVGINATVEKVAS 148 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118 A + + V + ++E ++ A A + E+ SG Sbjct: 149 GAADTVPYLMVTNLARTIEELKEHDIWVIA------------------ADMDGEQPLSGI 190 Query: 119 ---QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V + G E G+ + + P+ SLN+S + L ++E + Sbjct: 191 DVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLYETARQRGHA 250 Query: 176 SEKN 179 S + Sbjct: 251 STRQ 254 >gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 175 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 37/171 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P + N G +AR L L+ P K + + V++ Sbjct: 10 IVLFEPLMPANTGNIARTCA--GTDTILDLIEPLGFKLDNKHLKRA--GLDYWNKVQINY 65 Query: 74 FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 NL E + + F+ + A PK Q+ ++FG+E Sbjct: 66 HQNLPEFLKTVENPKNLFLVSKFANQDYTDPDYSDPK-------------QDYYLLFGKE 112 Query: 129 RWGLT------NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL N E I P + +LN+S + ++++E + Sbjct: 113 TTGLPEPFMRKNPE-----KAIRIPQDDDHIRALNLSNSCAIVIYEVLRQQ 158 >gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 276 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L N+G + R+ F L S +++ A ID + V Sbjct: 127 VLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEHIDHIEV-R 185 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL AI +LH T + L E+ G+ + ++ G E GL + Sbjct: 186 NLANAIEELHAAGFLTVGLDSEGPQRL----------EKTLQGKKIALVLGSEGKGLRQK 235 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 A+ + SLN+S A + ++ + S Sbjct: 236 TRETVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAEGS 276 >gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii ATCC 35580] Length = 274 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 18/169 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD- 65 +L + K V++L N G + R+ F++ + L R + SA A Sbjct: 119 ELASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAA 178 Query: 66 --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ + + ++E + +++ A P + Sbjct: 179 WVPLLYTANLVRTVEELKRNGFWVFGADA-QGEPLPHTKFPD--------------KTLL 223 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E G++ ++ + P + SLN+S A ++++E Sbjct: 224 IMGSEGSGISRLLKTSCDSFTAIPTSGKLDSLNVSVAAGILMYEVRRQQ 272 >gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum DSM 180] Length = 247 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVF-- 74 L + Q N+G R + ++ P+D + ++ A + V+V Sbjct: 103 LDEVQDPHNLGACLRTAEAVGVQ--AVIAPKDNAVGLTPVVCKVASGAAETLPYVQVTNL 160 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + +A+ + + A EA+ L +G +G++ G E GL Sbjct: 161 ARVMDALKE------------RGIWLIGAAGEASDELYAADLTG-PLGLVMGAEGSGLRR 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E + Sbjct: 208 LTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245 >gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 246 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 22/163 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 + IL + + N+G + R N + + R + +SA A +V Sbjct: 100 IFILDEIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158 Query: 75 S---NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + ++E L F+ A + + +G++ G E Sbjct: 159 NISQTIEELKKQGLWFVCA----------------DMGGETMYNLNLKGPIGLVIGNEGN 202 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + I S P+ SLN S A ++ +E + + Sbjct: 203 GVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245 >gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 268 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV++L +P+ N+G V R F T + D W R+ + + Sbjct: 115 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 169 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L + L + + + ++FG ER Sbjct: 170 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 214 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G++ E A + ++S P+ P S N++ +V + ++ + E Sbjct: 215 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 268 >gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL + N G + R N+T + + R + +S A + Sbjct: 99 ENPLILILDELNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T ++ +G + +I G E Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E + + Sbjct: 204 GKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKV 248 >gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568] gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568] Length = 366 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 22/171 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + AK V+ L + N+G + R+ +F + + L +P R++ A+ + Sbjct: 213 EAPAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEHIK 272 Query: 69 -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 D + V ++A + TT+ ++ + + + Sbjct: 273 AINADDFLSVLDTFRKA----GYAIVTTSSHKGTP-------------LAQAKLPAKMVL 315 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G+ER GL++ + +S SLN+S A +++ + + Sbjct: 316 VLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLADWWRQNQA 366 >gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium tuberculostearicum SK141] gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium tuberculostearicum SK141] gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 156 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 21/160 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+ +P + N G R + L L+ P +K + + V++ + Sbjct: 6 IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQIHKD 64 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +A+ TT I + ++FG E GL Sbjct: 65 FQACMDALPGARVFAFTT---------------HTDKWFTDIEYQEGDVLLFGTEPTGLP 109 Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E I + P+ P S+N+S + V+E Sbjct: 110 EEHINHPRVTDRVRIPMVPARRSMNLSNSASTAVFEAWRQ 149 >gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3] Length = 272 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 12/160 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++ + L + N+G + R + L+ S +A ++ + Sbjct: 119 SLDPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEAVRATMGSVF 178 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +V + EA A + SV+ + A V + + I+ G Sbjct: 179 ---AVSITRTDPEAFL---------AWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMG 226 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E+ GLT++ A + + P+ SLN++ A +MV+ Sbjct: 227 NEQAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVY 266 >gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus AQ3810] gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 247 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 23/175 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L +++L N+G R + + + R + + A V Sbjct: 90 LAQHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEV 149 Query: 68 I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + R L+E + + T A + + Sbjct: 150 VPLIRVTNLARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G+ + +I P+ SLN+S A + ++E + + + Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247 >gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1] gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1] Length = 149 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 22/166 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + N+G + R F + + ++ P SE+ + ++ + Sbjct: 2 RIALHQPDIAGNVGTILRMAACFGVP-VDIIEPCGFPFSERGLRRA--GMDYAEAAEISR 58 Query: 76 NLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E+ A + TTA + K+ P + ++ G E G Sbjct: 59 HADWAAFESRAAGRIVLLTTAADLTLDKAGFLPDDI---------------VLLGSEGAG 103 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ + P+ P F SLN++ + + + E + + + Sbjct: 104 VPRPVHDRADLRVRIPMRPGFRSLNVAVSAGIALAEALRQTGGWPQ 149 >gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4] Length = 234 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 18/153 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R + Q+ V WP + R +++ + + +++ + + EA A Sbjct: 32 NIAAVIRTADAVGIHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-MDEAAAQ 85 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 E A+ + I + +I G ER G++ E +A+++ Sbjct: 86 FKAA--------GMQILATNFSENAVDFRD-IDYTKPTVVIMGNERDGVSEEGLAIADQQ 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ + SLN+S A L+++E + Sbjct: 137 IIIPMIGMVQSLNVSVASALVMYEAQRQRAEAG 169 >gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] Length = 267 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV++L +P+ N+G V R F T + D W R+ + + Sbjct: 114 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 168 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L + L + + + ++FG ER Sbjct: 169 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 213 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G++ E A + ++S P+ P S N++ +V + ++ + E Sbjct: 214 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 267 >gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901] Length = 247 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +++L N+G R+ + + + +E AR + A + + V Sbjct: 97 PLILVLDGVTDPHNLGACMRSADAAGVHAVVIPKDNSAGLNETARKVACGAAETVP-LVV 155 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +NL A+ L A EA + +G V I+ G E G+ Sbjct: 156 VTNLARALNKLQ---------DAGLWVAGAAGEADADIYSADLTGPRV-IVMGAEGDGMR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN+S A ++++E + Sbjct: 206 RLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEVLRQR 244 >gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-2A] Length = 244 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 M P + + PV +L+ N G + R+ + + + + + Sbjct: 82 MEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAATGVDAVFISSTGSAPLNGDVVK 141 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +SA + +V + + D+ + + + L E + Sbjct: 142 TSAGGAFKVPISKV-----QHLKDVVY------YLKAHDIPTLGITEKSTETLYDSDLKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++FG E G++N + + + P+ SLN+S A ++ +E + Sbjct: 191 PLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYETIRQR 243 >gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402] gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 263 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 19/159 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R + + + R ++ +S A + +RV + Sbjct: 114 IMILDGLEDPHNLGSIIRTADAIGIDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRV-N 172 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N+ +AI L ++ T A+ +++ + + ++ I+ G E G Sbjct: 173 NINQAIDKLKDAGYWVAGTDAKQSVDYRKM--------------TADIDLAIVIGSEGEG 218 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ + +I P+ SLN S A L+++E Sbjct: 219 MSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYR 257 >gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium aromaticivorans DSM 12444] Length = 271 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 11/144 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L N+G + R+ F++ L + S S++ A ++ VRV Sbjct: 125 IVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAPPESGTLAKSASGALEIVPWVRVV- 183 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL A+ + + + + + V + SG V ++ G E GL + Sbjct: 184 NLSRALERM---------SEEGYWRIGLDGDGKAVFPAALPSG-PVALVLGAEGEGLRHN 233 Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159 ++I P+ SLN+S Sbjct: 234 VAQHCDSIARLPIASAIESLNVSN 257 >gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15] Length = 160 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 11/164 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + +N+G R F L L ++ P ++K+ +A + + Sbjct: 8 RIALFQPGIPQNVGACIRLTACFGLG-LDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHD 66 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + A R + + +L + A + F + ++FG E G E Sbjct: 67 SWETFLK---------APERVDGRLLLFTTKGATPFHRFSFEPGDT-LLFGNESRGAPEE 116 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 A ++ I P+ P S+N++ + + E + + E Sbjct: 117 VHAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPEAG 160 >gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ N + + V N G + R + K +SA Sbjct: 109 SAGKILNGKPKLISVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAG 168 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + R N+K+ + L R + ++A V Q Sbjct: 169 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVELADADLTQPTAW 217 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GL E + ++ + P+ SLN++ A + ++E + Sbjct: 218 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 265 >gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM 43021] gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM 43021] Length = 276 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R ++ VLA A + + IFG E WGL E + L++ ++ P++ Sbjct: 185 RLKDAGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADEVVRVPIHGRA 244 Query: 153 PSLNISQAVLLMVWECMENSIVSSEKNVK 181 SLN++ A + ++ + S Sbjct: 245 ESLNLATAAAVCLYASARSQRAGSPAPAP 273 >gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2] Length = 161 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 I+L P++ +N G + R L ++L L++P +++ + S+ V Sbjct: 4 IVLFQPEIPQNTGNIGRMCA---LTQSRLHLIHPLGFTITDRHLRRA--GMDYWFSLDVH 58 Query: 75 SNLKEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + A + T+ A R + + G G++FG E G Sbjct: 59 HHADWA------AFLTSPHAPPRERLW-LFTTHATRRHWDAAFADGD--GLVFGNEGHGA 109 Query: 133 T---NEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++EI + ++ P NP SLN+S A + +E + + S Sbjct: 110 PAWLHDEIGAARR-VTIPHANPDLRSLNLSTAAGIACYEALRQVGMPS 156 >gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 185 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71 I+L +P++ +N G +AR N L L+ P +K + + + Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAVLDYGGEV---EI 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129 R +L+ + A +N + L K A + ++ +FGRE Sbjct: 59 RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL + ++ + P++ + N+S + ++++E + + Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168 Query: 189 KGE 191 K + Sbjct: 169 KDD 171 >gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 333 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + + R + L A ++ E F + ++ G E Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ ++I P++ + SLN S A + ++ Sbjct: 282 GLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519] gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii] Length = 242 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R+ + + R + ++A A + ++V Sbjct: 96 IILDEIEDPHNLGAIIRSAEGAGAHGVIIPKRRSASVNATVEKTAAGAASYMKVIKVTNL 155 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S +++ + +IYA + + + +V ++ G E G++ Sbjct: 156 VSTVEKLKKEGIWIYAL---------------DMDGESYDTVDLKGSVALVVGNEGKGIS 200 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A ++++E + Sbjct: 201 RLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239 >gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + N+G + R + + + R + +SA A + RV + Sbjct: 106 IVMLDEINDPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAGAVEYVPVARV-T 164 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + I L + V+ + + ++ G E GL Sbjct: 165 NLDQTIRQL----------KELGLWVVGADMDGPEVYWDAKLTGPLLLVIGGEGKGLGRL 214 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A L+V+E + Sbjct: 215 IKERCDMLVRLPMAGHVGSLNASVAAALLVYEVIRQR 251 >gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 248 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 15/168 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANA 64 + S ++IL + N+G R + ++ P+D A R + Sbjct: 91 EEVTSEPPLLLILDGVEDPHNLGACFRVADAMGVH--AIICPKDSAVGVNATVRKVACGG 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + A+ ++ T ++ ++ A + + ++ Sbjct: 149 ------AESVPFI--AVTNIGRTIRT---LKDQGLFIIGTDGEAKHNLYQENLKGPIAMV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ L ++++S P+ SLN+S A + + E Sbjct: 198 LGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQR 245 >gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae RM3277] Length = 226 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 18/150 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L NIG + R + +V E +S+ A + V Sbjct: 87 VLYGLSDVGNIGAIVRTAHALGCGGIVVVA--KNLAMEGVLRASSGAAYEANIALVEDGL 144 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + F TA N V Q V ++ G E GL + Sbjct: 145 SLLNELKQVGFKIYATASGGKNAHEVKF--------------DQKVALVMGSEGEGLHKK 190 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +A S+ I+ + + SLN+S A ++ Sbjct: 191 VLAKSDEIVGIKMKNDWDSLNVSAAFAILC 220 >gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis 12822] gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama I] gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis] gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica RB50] gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS] Length = 245 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 ++ + +GP + IL N+G R + ++ PRD + + + Sbjct: 87 EVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + ++E ++ T + A ++ + + Sbjct: 145 GAADTVPYLTVTNLARTMRELKERDVWLVGT--------------DDQAGESMHQVDARR 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 191 SMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243 >gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum 2002] Length = 251 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 22/179 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAH--AVIAPKDRSATLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 V+ + V + L++ +I TT A + + Sbjct: 147 AEVVPYITVTNLARTLRDLKDAGVWIAGTT--------------MEADTDLYHFDAAGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + G E G+ + ++S P+ SLN+S + +++ E ++ E Sbjct: 193 AWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQRVLKGEAKA 251 >gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM 12653] Length = 253 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 23/167 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G +I + Q N+G + R F + + +N + K +S + I Sbjct: 104 EGVYVIADNVQDPGNLGTIIRTADAFGVDAVFTINNSVDIYNPKVLRASMGSIFHIP--- 160 Query: 73 VFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + E + L ++AT + V + I G E Sbjct: 161 VIATANEVLYKLKGKGVKVFATHLKGEKFVHEV--------------EIDKGTAFILGNE 206 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+++ + + I P+ SLN+S A + ++E ++ Sbjct: 207 ARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIK 251 >gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes J139] gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA2] gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL001PA1] gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL044PA1] gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA2] gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA3] gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA3] gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA4] gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL060PA1] gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA2] gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL103PA1] gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp. P08] Length = 318 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 18/173 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q G ++ L N+G + R+ F + + + R + A +SA A Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214 Query: 69 DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV SNL +A+ +A T + V EA + + ++ Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E GL + + S P++ SLN S A + ++E +SE Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317 >gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Conomelus anceps] gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Delphacidae sp.] Length = 239 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 12/148 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R + Q+ + ++ S A ++ +N VR ++++ AI+ Sbjct: 30 PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSNHWV---KVRTHASIENAISTC 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A + + AI +I Q II G+ER G++ + +AL++ I Sbjct: 87 K-----AAGMQILAAHLTN---QAIDFR-QIDYNQPTCIILGQERAGISKQALALADHNI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ + SLN+S A L+++E Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855] Length = 312 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 17/160 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR 72 G V++L Q N+G + R F Q + P G K + A + + R Sbjct: 164 GTVLVLDGIQDPGNVGTLLRTAAWFG-AQAVVAGPGTAGLYGPKVMRAGAGSHWALPLAR 222 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A R R + ++ + + ++ G E GL Sbjct: 223 T-----DAPGPFL------DRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGL 270 Query: 133 TNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM 169 + + + +S P P P SLN++ A ++++E + Sbjct: 271 SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEWL 310 >gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis HAW-EB3] Length = 246 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 27/164 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69 IL N+G R + +V PRD + + A V+ + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 158 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +L++ + + A + + +K+ L ++ I G E Sbjct: 159 LARTMKSLQD--KGVWIVGAAGEADSDLYKTDL---------------KGSLAIAMGAED 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL ++I S P++ SLN+S A + ++E + + Sbjct: 202 KGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEAVRQRL 245 >gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 262 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 18/174 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64 P + G ++++ Q N+G + R+ + Q L V D + + K S+ A Sbjct: 103 PHVAPGKPGLLLVIDAVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLY-APKVVRSAMGA 161 Query: 65 DCVI--DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + + E +A + +YA P+ Q Sbjct: 162 HFRLAMEQDLSWDAIGERLASVDHVYAA------------DPEARMPY--YAADWRQPSA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL++ L+ I+ P+ SLN++ A ++++E + + Sbjct: 208 LLVGNEAHGLSDAARRLATKQIAIPMRGGTESLNVAVAASVILFEALRQRTLGR 261 >gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei F0415] Length = 246 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R + + + R + +S A + R Sbjct: 98 NPLILILDGLTDPHNLGSILRTADATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIAR 157 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + ++I+ T ++ +G + +I G E Sbjct: 158 VTNLSQTLDKLKEAGYWIFGT--------------DMDGTPSHKWNTAG-KLALIIGNEG 202 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+ SLN S A ++++E + + Sbjct: 203 RGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMYEVFRHKL 246 >gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 258 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65 S ++IL D N+G + R N + L +EK ++ + Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + + LKE NN+ + + A + +I + IIF Sbjct: 165 YYLEKSEIINFLKE----------------NNYSIISTYLDKAAISYNKIKLKEKNAIIF 208 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++++ I ++N P+ SLN++ A +++++ E Sbjct: 209 GNEGNGISDDFINITNYKTIIPILSNTESLNVAVATGIILYKFRE 253 >gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213] Length = 292 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIEKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99] Length = 231 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83 NI V R + Q+ V WP + R +++ + + +++ + + D Sbjct: 32 NIAAVIRTADAVGIHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-----MHD 81 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R + + A+ E I + II G E G++ E IA ++ Sbjct: 82 AEAAF----RAQGMQILATNFSKEAVDFRE-IDYTRPTAIILGNEHDGVSAEGIAAADQH 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ + SLN+S A L+++E + Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQRQAAG 169 >gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 252 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 21/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ L ++ P+D + R + A VI V V + Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + + ++ +G + +I G E G+ Sbjct: 158 LARTLEKLQQRGLWVVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN+S A + ++E + V + Sbjct: 204 RRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 247 >gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis 60-3] Length = 247 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57 P L + + P I+L V N G +AR + +V P S A Sbjct: 87 PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVH--AIVIPERDSVSVTADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++SA A + + V ++ + F+ R++ ++ A + Sbjct: 140 VNASAGA---LMRIPVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +GI+ G E+ G++ + +S P SLN+S A +M++E + + Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQQGAT 246 >gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1] gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans SPH-1] Length = 263 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 29/191 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64 + +K +++L N+G R ++ P+D A + ++ A Sbjct: 93 EADGISKPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGVNATVAKVASGA 150 Query: 65 DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V + R + LKE D+ +I T+ + A + Sbjct: 151 AETVPYFMVTNLARTLNELKE--RDI-WIIGTS--------------DDAPKTLYEVDLT 193 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E G+ + +I P+ SLN+S A + ++E + + Sbjct: 194 GPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALRQRGQGTTP 253 Query: 179 NVKEQNTPATK 189 V PA + Sbjct: 254 AV--SAAPADQ 262 >gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51] gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 43/188 (22%) Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P+ P ++ + G V +L N+G + R+ + + L +A Sbjct: 108 PHLPSVEEACAGASRVAVLEGIADSTNVGAIFRSAAALGIDTVLLTPSCCDPLCRRAVRV 167 Query: 61 SANADCVIDSVRV-------------------FSNLKEAIADLHFIYATTARNRNNFKSV 101 S + R+ F + A+ D N S+ Sbjct: 168 SMGTIFQVPWARIGSESSQWPQQGMKSLRKLGFKTVAMALND-------------NAVSI 214 Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 P+ A + + I+ G E GL IA + P++ SLN++ A Sbjct: 215 DDPQLMAE---------EKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVDSLNVAAAS 265 Query: 162 LLMVWECM 169 + W+ Sbjct: 266 AVAFWQLR 273 >gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 185 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71 I+L +P++ +N G +AR N L L+ P +K + + + Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFHLDDKHLKRAVLDYGGEV---EI 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129 R +L+ + A +N + L K A + ++ +FGRE Sbjct: 59 RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL + ++ + P++ + N+S + ++++E + + Sbjct: 109 TGLLETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168 Query: 189 KGE 191 K + Sbjct: 169 KDD 171 >gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM 20544] Length = 271 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 21/167 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID- 69 + K +++L Q N G + R + L S+K ++ + + Sbjct: 118 ARKPLLVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPV 177 Query: 70 ----SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 S + +A A + TA + + G+ I F Sbjct: 178 VTDVSAEEVATFAQA-AGCQLLA--TALDEQAKPHF------------AVDFGKGSLIAF 222 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ EE+ + + P+ SLN+ + ++++E + Sbjct: 223 GNEGGGVS-EELLAAAEKVYIPMYGEAESLNVGVSSAVVLYEAVRQR 268 >gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 255 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 25/153 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R + + + P+ G + +SA A + +V ++K+A+ Sbjct: 119 NFGAIIRTAECTGVDGIII--PKKGAAPVTADTIKTSAGAAFKVPIAKV-DHIKDAVFYL 175 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + AT + N P + I+ G E G++ I Sbjct: 176 QASGISVTVAT---EKTNNTIYDVPF------------KEPCAIVMGSEDRGVSPSVIKA 220 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN+S A + ++E + Sbjct: 221 ADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253 >gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15] Length = 251 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 20/152 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L Q N+G + R + + + + K ++ + + + +L+ Sbjct: 110 LDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGSIFHLP--VIMMSLE 167 Query: 79 EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 EAI DLH FI T R + + +G+I G E G+ Sbjct: 168 EAIQDLHELGVFILGTALRG---AQPYTDVENLGA-----------IGLIIGNEAQGVAP 213 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + + P+ SLN + A ++++ Sbjct: 214 ELLDQCDGRAYIPIRGKAESLNAAVAAGILLY 245 >gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 299 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + + N G V R + + + KA +S + Sbjct: 128 EEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSL 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++EA+ L TA R ++ L++ + G IF Sbjct: 188 FHLPVATGVP-VEEAVDGLR-----TAGARVLAADGAGERDLDEELDDGVL-GAPTAWIF 240 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL AL++ ++ P++ SLN++ A + ++ + Sbjct: 241 GNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPTG 292 >gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries] gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida] Length = 261 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73 V+IL N+G + R+ F+ + L P PSE +S+ A ++ V+V Sbjct: 110 VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 167 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + ++ Y I + II G E Sbjct: 168 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 213 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ + ++ P++ SLN+S A + ++ Sbjct: 214 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 249 >gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000] Length = 154 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 11/164 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + +N+G R F L L ++ P ++K+ +A + + Sbjct: 2 RIALFQPGIPQNVGACIRLTACFGLG-LDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + A R + + +L + A + F + ++FG E G E Sbjct: 61 SWETFLK---------APERVDGRLLLFTTKGATPFHRFSFEPGDT-LLFGNESRGAPEE 110 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 A ++ I P+ P S+N++ + + E + + E Sbjct: 111 VHAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPEAG 154 >gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645] gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645] Length = 269 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 24/166 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + +++L + N+G + R L + R + A +S + ++ Sbjct: 118 RPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRAS------LGTIF 171 Query: 73 VFSNLKEAIADLHFIYATTARN----RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ATTA R + A + V E++ +I G E Sbjct: 172 AVPTFE----------ATTAETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSE 221 Query: 129 RWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + L++ + + P+ + SLN+S ++++E Sbjct: 222 AEGLS--DRWLADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQR 265 >gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542] gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542] Length = 271 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 21/146 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-----FSNLKEA 80 N+G R+ + LV PR P ++ S + R+ L+ A Sbjct: 138 NLGAAFRSAAALGV-DAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIPWPSGIGELQAA 196 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 T + E NE+ IFG E GL E + Sbjct: 197 --------GFTVAALALSDDSVTLDEFVEQKNEK------TAFIFGTEGHGLAQETLEAV 242 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 ++++ P+ SLN++ + ++ + Sbjct: 243 DSVVKIPMAGGVDSLNVAASAAVVFY 268 >gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss] gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14] gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 265 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 22/155 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79 + NIG + R + + L +P + SS A + + +L+E Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQA-----SLEE 180 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA- 138 +A + R + P ++ Q + ++FG E+ GL+ + Sbjct: 181 VLA---LV-----REQEWKIFTTTPSTQTFYFDQNFC--QPLAVVFGSEKDGLSPSWLDG 230 Query: 139 -LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 N I+ P+ SLN+S +V + +E + Sbjct: 231 SFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500] Length = 405 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 15/171 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N G ++L D + EN+G R L++L L + K ++ A+ + Sbjct: 223 KNIPWGISVLLDDCRSSENVGSFYRTCDGSGLSRLYLCGITATPANLKVAKTALGAEFDV 282 Query: 69 DSVRVFSNL---KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------- 118 S L KE I R+ + +L + E + S Sbjct: 283 PWSYSPSALHCVKELKRKGVVIIGIEQTPRS--QPLLESIDKLASEIEIVDSQRQQQQQQ 340 Query: 119 ---QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++FG E GL+ E I + I + SLN++ + ++ + Sbjct: 341 TRYPPICLLFGNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAY 391 >gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella adiacens ATCC 49175] Length = 287 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R + + + R + +S A + VRV + Sbjct: 141 IVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLTATVAKASTGAIEHVPVVRVTN 200 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ A +++ T + K + + I+ G E G+ Sbjct: 201 LTQTIEQLKARGVWVFGTDMNGTDYRKW---------------NTKGPLAIVMGNEGKGV 245 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +++ P+ SLN S A LM++E N Sbjct: 246 SRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNR 285 >gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Puerto Rico] gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Virginia] Length = 251 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73 V+IL N+G + R+ F+ + L P PSE +S+ A ++ V+V Sbjct: 100 VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 157 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + ++ Y I + II G E Sbjct: 158 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 203 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ + ++ P++ SLN+S A + ++ Sbjct: 204 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 239 >gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parasanguinis F0405] Length = 242 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 21/178 (11%) Query: 2 TPYAPQLQNSAK---GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 T A L+ +AK ++IL N+G + R N++ + + R + Sbjct: 80 TDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATNVSGVIIPKHRAVGVTPVVS 139 Query: 59 SSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +S A I RV + L + + +I+ T ++ Sbjct: 140 KTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWN 185 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +G + +I G E G++ + +I+ P+N SLN S A ++++E N + Sbjct: 186 TAG-KLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110] Length = 220 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 13/174 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 Q+ + + IL + N+ + R + + +N D +P+ S + Sbjct: 10 RIRQVLEKRQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGS 69 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + S N+K I L R NF A + I Q Sbjct: 70 DKWVFLHS---HPNIKTGINHL---------KRQNFNIYAAHFTDQSLDYREIDYTQPTA 117 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E+WG++ E L + I P+ + SLN+S A ++++E + Sbjct: 118 ILLGAEKWGVSEEAANLVDGHIIVPMLGMVQSLNVSVAAAVILFEAQRQRLAQK 171 >gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J] gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii 12J] Length = 250 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 21/171 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70 +++L N+G R ++ P+D + ++ A + Sbjct: 95 TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T + A + I+ G Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPTAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E G+ +A++S P+ SLN+S A + ++E + + + Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAR 249 >gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA1] Length = 318 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 18/173 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q G ++ L N+G + R+ F + + + R + A +SA A Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214 Query: 69 DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + RV SNL +A+ +A T + V EA + + ++ Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E GL + + S P++ SLN S A + ++E +SE Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317 >gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 263 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVAR---AMWNFNLTQLRLVNP-RDGWPSEKARSSSA 62 L + V++L Q N+G + R A+ +V K ++ Sbjct: 107 PLLAKERSLVVVLDGVQDPGNVGTIIRSADAVAADG----VIVGAGCADIYGPKVLRATM 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + V ++L E + A+ R + + + AA Q V Sbjct: 163 GSLFHLP--VVHADLAEVLPQ--------AKQRGIRLAGTSLQAAANCFAYDFT--QPVW 210 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FG E GL+ L + + P+ SLN++ A ++++E M Sbjct: 211 LLFGSEGGGLSPAVRELMDDGLLIPMRGQAESLNVAMAASVLLYEAMRQR 260 >gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 174 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++G N G + R+ + L +L ++ P K A A ++ + Sbjct: 4 IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLEPKHLKRPA-AGILLSEIEHEIH 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + N E + + T R K + I + +++ +FGRE G Sbjct: 62 KNWQNFSEKYGQKNLFFIT----RYGQKLY-----TEVDFYTEIETKKDIFFVFGRESTG 112 Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + + P+ SLN++ V+++ +E Sbjct: 113 IPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFHRQ 153 >gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 277 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149 T + R +LA + + + + +FG E WGL E + L++ ++ P+ Sbjct: 180 TVRQAREAGLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLELADEVVRVPIY 239 Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 SLN++ A + ++ S + +++ P+T Sbjct: 240 GRAESLNLATAAAVCLY----ASARAQRRSLHPVEDPSTS 275 >gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 174 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 10/162 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++IL + + NIG V R F + ++ L P + ++ A + Sbjct: 19 QADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGATENV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127 N E + LH N + E AI L+ + I G Sbjct: 79 AW-EYAENTLEVVQKLH--------KENVSVWAIEQTEKAIFLDSFQPKKNTRHAFILGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E G++ E + + P SLNIS A ++VW+ Sbjct: 130 EVRGVSQEAVDACGQALEIPQFGTKHSLNISVATGVVVWDYF 171 >gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 253 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 63/166 (37%), Gaps = 23/166 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + G ++L Q N+G + R F +T + L + S+ A Sbjct: 98 EEYLSEKPGTFLVLDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVSSGAL 157 Query: 66 CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++F + L+ + ++I +T+ R ++ + Sbjct: 158 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTENWSKLPELK 200 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+ G E G+ + S+ ++ P++ SLN++ A +++ Sbjct: 201 ELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGIVL 246 >gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 170 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 229 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + + R + L A ++ E F + ++ G E Sbjct: 230 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 279 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ ++I P++ + SLN S A + ++ Sbjct: 280 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315 >gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989] Length = 244 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 20/163 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ + +++L + Q N+G + R +F + + + + K SS A Sbjct: 91 LKPVKEENILLLDNVQDPGNVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFY 150 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + ++L E I L +YAT +++ + I + I Sbjct: 151 IP--VIQTDLVEEIKKLQERNIEVYATALHDKHKD-------------LQDIKPSKKYAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E G+ E I LSN I+ + F SLN++ A + ++ Sbjct: 196 LVGNEGQGVRKELIDLSNHIVKIEM-ETFESLNVAIATSICMY 237 >gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 263 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G V R + LV S + ++ + + + + + E + Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ATIPEFL--- 184 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A SV+ A V ++ + I+ G E+ GL E A + + Sbjct: 185 -------AWRETWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 237 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 P+ SLN+S A +M++ Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259 >gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum WAL-14163] gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 246 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 20/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 IL + N+G + R + + R + +SA A +V Sbjct: 101 FILDGIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNI 160 Query: 75 -SNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++E L F+ A + L R+ +G++ G E G+ Sbjct: 161 SATIEELKEKGLWFVCA----------------DMGGELMYRMNLKGPIGLVIGSEGDGV 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + I S P+ SLN S A ++ +E + + Sbjct: 205 SRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIVRQRME 246 >gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica PR426713P-I] Length = 247 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57 P L + + P I+L V N G +AR + + + P S A Sbjct: 87 PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVHAIVI--PERDSVSVTADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++SA A + + V ++ + F+ R++ ++ A + Sbjct: 140 VNASAGA---LMRISVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +GI+ G E+ G++ + +S P SLN+S A +M++E + + Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246 >gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus TCF52B] Length = 238 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 48/173 (27%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI----DSVR 72 +IL Q N G + R + ++ AD +I +SV+ Sbjct: 90 VILDQLQDPHNFGAIIRT------------------------AVASGADAIIIPKNNSVQ 125 Query: 73 VFSNLKEAIADLHFIYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQ-------- 119 V + + T + N + + KE I + +G+ Sbjct: 126 VTPTV------VKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKVYYKTDLR 179 Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E G+ +A+I+ P+ SLN+S + ++++E M Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232 >gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6] gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6] Length = 277 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSE--KARSSSANADCVIDSVR 72 ++L Q N+G + R+ + Q L + W + +A + A +++ V Sbjct: 133 TLVLDRLQDPGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVE 192 Query: 73 V--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V L + AT++ + V P Q + G E Sbjct: 193 VNELDTLDLPL------LATSSHAEQSLHEVRLP--------------QPCAWVLGHEGQ 232 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+ + + P SLN++ A + ++E ++ Sbjct: 233 GVAEAVMRRCALTVRIPQPGGEESLNVAAAAAICLYESARQALTG 277 >gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2] gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2] Length = 169 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 21/170 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75 +L +P++ +N G + R T+L L+ P E+ + D V ++ ++ Sbjct: 5 VLYEPEIPQNTGNMMRTCMATG-TRLHLIQPLGFSLDEQHLKRA-GMDYVKELEY-TIYK 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133 + +E T +N+ + + A + ++ I G+E G+ Sbjct: 62 SWEEF---------TQQNPSDNYYYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPKT 112 Query: 134 --NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + ++ + P+ SLN+S ++++E + V+ Sbjct: 113 ILSRQLEHC---MRLPMVANARSLNLSNCAAIILYEALRQLDYPGLSGVE 159 >gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506] Length = 158 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 + L +P + +N G +ARA+ L +L +V P G+P A A +D + Sbjct: 4 ALALYEPDIAQNAGTLARAVACLGL-ELHIVEP-AGFPVGDAGFRRAG-MDYLDRAVIRR 60 Query: 74 ---FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 F +E A + ATT R V + ++ GR Sbjct: 61 HASFKAFEEWRRA-EGRRLVLATT---RGAVAHVDFAFT------------ETDVVLLGR 104 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ ++A I P+N SLN++ A +++ E + + Sbjct: 105 ESAGVPEAVHESADARIVIPLNEGARSLNVALAGAMILGEALRQT 149 >gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus] gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 247 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64 ++ N + +L++ N V R F + + +V + + P+ + Sbjct: 40 EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ ++K AIADL +YA + V I Q Sbjct: 97 -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYLGEGTIPVSD-----------IDLSQP 142 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FG E G++ E + L++ P+ S NIS A L +++ E + + ++ Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201 Query: 181 KEQNTPATKGELLSFLDYL 199 GE + + Sbjct: 202 ----YYLLPGEKKALYEQW 216 >gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa] gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa] Length = 269 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 19/166 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ V R+ + +++ ++ R S A+ +D + ++ + K+ + Sbjct: 84 GNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLD-IELWDSAKDCFQVLK 142 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + ++ + I+ G E G+++E + LS+ Sbjct: 143 SRGYRIATT----HVGIDAVSIYDM--------DWSCPTAIVVGNENRGISDEALELSDL 190 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNT 185 S P+ + S N+S A +++ + + S E+ Sbjct: 191 HCSIPMKGMVDSFNVSVAAGILMHHAVCDRTSRLGSHGDLTPEETQ 236 >gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803] gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803] Length = 1127 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 9/142 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G +AR F L L L ++ S AD ++ ++E + + Sbjct: 985 NLGGLARTAEVFGLDTLVL-GNTSFALDPSFKAMSMTADMWLN-------IEE-VQPCNL 1035 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + + ++++ V + + V + + ++ G ER G E ++L + + Sbjct: 1036 VQWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKAVLVLGNERKGCPEEILSLCDMTVEI 1095 Query: 147 PVNPLFPSLNISQAVLLMVWEC 168 SLN+ + + VW+ Sbjct: 1096 QQLGNIRSLNVHVSCAIFVWKW 1117 >gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium phaeobacteroides BS1] Length = 247 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 11/166 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + +++L N+G + R + LV + + +SA A Sbjct: 93 PRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDGVILVEGKGSPVNAAVHKASAGAVSHS 152 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V +L+ + L R ++A A + I G E Sbjct: 153 RLCKV-KSLQACLKML----------REEGFQIIAADMHAEKNYTEVDFRIPSAFIMGTE 201 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 GL + + ++ P+ SLN+S + ++++E M ++ Sbjct: 202 EKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQRLL 247 >gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1 str. 28L] Length = 270 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 11/158 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P++ L Q N+G + R + + L ++K S+ A + + Sbjct: 119 PIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVYNDKVLRSAMGAVF---KIPLV 175 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ D+ + A R + + + ++ Q + FG E GL Sbjct: 176 TDV-----DMETLQAYCLRT---HRRLTGAAASGSSSYTQLDYAQARVLAFGNEGNGLAL 227 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ P SLN++ AV +++++ E Sbjct: 228 PFLQACAETVTIPMRPETESLNLAAAVGIVLYKAWERQ 265 >gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str. Ether] gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457] gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90] Length = 297 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas fluorescens Pf-5] Length = 254 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R LV P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGALA-VLV-PKDKSATLTPTVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ +I T EA L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLWIVGTAG-------------EAEQELYDQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E M Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244 >gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC 17982] Length = 290 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 17/147 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS------NLKE 79 N+G R+ + LV P+ P ++ S + R+ S L+E Sbjct: 146 NVGAAFRSAAALGIDT-VLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESWPGDIATLQE 204 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A T + ++ + A L + ++ G E GL IA Sbjct: 205 A--------GFTVASLALSDDSVSLDDFAA-LPALQGPDARLAMVMGTEGDGLGRHTIAA 255 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 S+ + P++ SLN++ A ++ W Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFW 282 >gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q A ++IL N G + R + + + R + +S A + Sbjct: 96 QQEANPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155 Query: 69 DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 RV +NL +A+ L +++ T T + + + Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G++ + +I+ P+ SLN S A ++++E N + Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248 >gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1] gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1] Length = 248 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 + +++L N+G R T +V P+D + R + A Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 VI V V + L++ ++ T EA + ++ +G V + Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRRAKR 248 >gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu] Length = 260 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L G ++L Q N+G + R+ + P + S K S Sbjct: 103 PSHP-LPARVTGTSVVLDGVQDAGNVGSILRSAAAAGVKH-VFCAPGTAYAWSSKVLRSG 160 Query: 62 ANADCVIDSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ + +++ A+A+ V Sbjct: 161 MGAHFLLS---IHEDIEAGALAE------------RIGVPVALTDSHGAQAIYDCDLAGP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 206 VVWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1] Length = 234 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 31/171 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--------VNPRDGWPSEKARS 59 L + ++L + N V R F + + + VNP ++ Sbjct: 33 LAQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNP--FVTRGASQW 90 Query: 60 SSANAD---CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + + ++ + FS+LK IY T+ + L P E Sbjct: 91 LTLHKYFQPEEPENAVINCFSSLKS--NGFK-IYGTSPDPQTRPIQDLDPNE-------- 139 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++FG E G++NE ++ ++ P+ S NIS A L + Sbjct: 140 -----KIALVFGNEHEGISNEVKNAADGLVHIPMRGFTESFNISVAASLFL 185 >gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli] Length = 253 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 12/166 (7%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L N+ P +++L Q N+G R+ + + + R + + ++A A Sbjct: 98 LHNNLNPPFLLVLDGVQDPHNLGACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAE 157 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V S+ +NL + R + ++ L + ++ G Sbjct: 158 V-TSLFTVTNLATCLE----------RLKKCGIWCYGLDQSGTRLIYDAPLTGPLALVLG 206 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + +++ P+ SLN+S A + ++E + Sbjct: 207 AEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVAAGVGLFEVVRQR 252 >gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 267 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82 N+G + R L L++ S +A +S A + R + A Sbjct: 130 PGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGAIFTEKLAQARWDEFIAWLRA 189 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + R+ P A + ++ G E GL + + Sbjct: 190 GEGQLVAASLRDA-------VPYRGAPYVA-------PCFVMVGNESRGLPEDYELACDL 235 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN + A ++ +E + Sbjct: 236 RVTMPMKGRADSLNAAVAGAVLAYEVL 262 >gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 170 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCV-IDSVRV 73 ++L +P++ +N G + R L L+ P EK S +D + + Sbjct: 4 VVLYEPEIPQNTGNIMRTCVASGAA-LHLIEPLGFILDEKRVKRSVMDYSDDLNLTRHLD 62 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + + F R + +AIV + + ++FG+E G+ Sbjct: 63 WESFLKTVKGPVFYL-----TRYGEYTHSDFDYSAIVETD-------IYLVFGKESTGIP 110 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ P S+N+S V + V+E + Sbjct: 111 KSILKENYDHCFRIPMAPNARSMNLSNTVAICVFEVLRQ 149 >gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis L2-32] Length = 330 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI + + R + L A ++ E F + ++ G E Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ ++I P++ + SLN S A + ++ Sbjct: 282 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317 >gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 248 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 20/158 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV++L +P+ N G V R F T + D W R + + Sbjct: 106 PRTTPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 160 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L A + + + + + FG ER Sbjct: 161 ATAVERLTVA---------------ELPPGPVFALDPEGDDIRGVKLPDDAVLAFGSERS 205 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ E A + +++ P+ P S N++ +V + ++ Sbjct: 206 GLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLYHW 243 >gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 169 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 11/145 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R + ++ + P ++ ++ A + R F++ EAI Sbjct: 29 NVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQETVPW-RHFADPVEAI----- 82 Query: 87 IYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T R + K L E + + + +I G E G+ + ++ + +I Sbjct: 83 ----TVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDALLSHCDGVIE 138 Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170 P + SLN++ A + ++EC+ Sbjct: 139 IPQYGVKHSLNVAVAAGVALFECVR 163 >gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702] Length = 254 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 19/162 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K P II+ + Q N+G + R + + R + +SA A I Sbjct: 106 KPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIA 165 Query: 72 RV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV +K ++Y + +++ SG + ++ G E Sbjct: 166 RVSNLVDTIKTLKKHGVWVYG--------------AEADGTPIDKADLSGA-LALVIGSE 210 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +GL + ++S P+ SLN S ++++E ++ Sbjct: 211 GFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252 >gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20] gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli RM2228] gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20] Length = 227 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 19/151 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVRVF 74 IL NIG + R + + L + R E +S+ A ++ + +F Sbjct: 87 ILYGISDVGNIGAIVRTAYALGVDGLIFIGERLAM--EGVIRTSSGAALDLEIALNNDIF 144 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + L E + + F +A ++ G+ +I G E GL+ Sbjct: 145 TVLNE-LKQVGFKLFASASGGKQIHHY------------KVDKGKK-ALILGSEGLGLSA 190 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I + + + F SLN+S A ++ Sbjct: 191 KIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221 >gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 278 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 33/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65 + L + N+G + R + + L+ S + ++ + Sbjct: 133 VALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFSIPLYRFDES 192 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ F + T + +++ + F V ++ Sbjct: 193 AFLNWSAHFK---------GMVVGTHLKGSIDYRKID-------------FKNGPVILLM 230 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E+ GL + + + P + SLN++ A +M++E + + Sbjct: 231 GNEKQGLPDTLANRCDQLARIPQSGRADSLNLAVATAIMLYEIRRSYL 278 >gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 247 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64 ++ N + +L++ N V R F + + +V + + P+ + Sbjct: 40 EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ ++K AIADL +YA + V I Q Sbjct: 97 -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYFGEGTIPVSD-----------IDLSQP 142 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FG E G++ E + L++ P+ S NIS A L +++ E + + ++ Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201 Query: 181 KEQNTPATKGELLSFLDYL 199 GE + + Sbjct: 202 ----YYLLPGEKKALYEQW 216 >gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13] Length = 243 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L P +++L N+G R+ + +V PRD + A+ + Sbjct: 86 PGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + +RV + L+ ++ T A + Sbjct: 144 GAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG--------------EADHTLFQSKMTG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242 >gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays] gi|238014636|gb|ACR38353.1| unknown [Zea mays] Length = 347 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 17/200 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ R+ + + +++ R S A+ +D + ++++ E Sbjct: 162 GNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLD-IEIWNSPAE------ 214 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 +A + ++ V + Q I+ G E G++++ + LS+ S Sbjct: 215 ---CFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELSDLHCS 271 Query: 146 FPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 P+ + S N+S A +++ + + + E+N +L + E + Sbjct: 272 IPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPEENRILLA---EFYLRHREST 328 Query: 203 LEERGYFRPVEKKKKMLDDL 222 + K K++ L Sbjct: 329 -ATIVHEYAKMKAGKVMTRL 347 >gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 +Y T R VL + ++FG E GL + + I+S Sbjct: 211 VYGTRKRKPERLPDVLDA------MRGEEHRKDGYAVLFGNEARGLNGKTLEQCQRIVSI 264 Query: 147 PVNPLFPSLNISQAVLLMV 165 P+ SLN++ + +++ Sbjct: 265 PMYGKAESLNLATSAAIIL 283 >gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium HTCC2255] Length = 264 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65 +N K ++IL N+G + R+ F + + R+ P A + +++ A Sbjct: 108 APRNDKKARLVILDRVTDPHNVGAILRSAEVFG-ARAVIATARNSAPETGALAKTASGAL 166 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +RV NL +I L ++ +N+ + + + Sbjct: 167 ERQPYLRV-RNLATSIKSLQEMGYYVVGLDGTAKNSIDDI-----------AELHQNSPL 214 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ G E GL + ++ F SLN+S A + ++ Sbjct: 215 AIVLGAEGPGLRELTKQTCDELVKIDYAATFGSLNVSNATAVALY 259 >gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans DSM 12260] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 33/175 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 V++L + N G + R+ L LR R P+ +S A + Sbjct: 106 VVVLDHLEDPHNAGAIVRSAEAVGALAALLPLR----RGALPTGAMVKASTGAALRLPLG 161 Query: 72 RVFSN------LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 R+ + L+EA ++ A R+ F++ L+P+ + ++ Sbjct: 162 RIGNVGQDLRLLQEA---GLWVVGLEAQGERSLFETPLSPR---------------MALV 203 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G E GL + + ++ P+ SLN S A L ++E + SS Sbjct: 204 VGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGLYEWFRSVTPSSTFP 258 >gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9515] Length = 224 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 13/168 (7%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + + RD + + + + +++ Sbjct: 24 VLVEAVNKPHNLSAILRTCDAAGVFEANFICKRDEVKTFNSTAQGSQKWVKLNN---HET 80 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A++ L + FK + +N + G E+WGL++E Sbjct: 81 TISAVSHL---------KKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDEL 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 I+ + I P+ + SLN+S A ++++E + + S + + Sbjct: 132 ISKVDESIFIPMTGMVQSLNVSVAASILLFEAIRQRQIKSLLPLNGEG 179 >gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Mississippi] Length = 244 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73 V+IL N+G + R+ F+ + L P PSE +S+ A ++ V+V Sbjct: 93 VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 150 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 ++ + ++ Y I + II G E Sbjct: 151 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 196 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ + ++ P++ SLN+S A + ++ Sbjct: 197 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 232 >gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM 16795] Length = 248 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 14/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL + N+G + R + + R + +SA A + +V + Sbjct: 101 IILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTN- 159 Query: 77 LKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T + + + A V E+ +G + ++ G E +G++ Sbjct: 160 -----------IANTIKQLKKEGLWIAAADMDGGVFYEQDLTG-PLALVIGSEGFGVSRL 207 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN S A ++++E + Sbjct: 208 VKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQRM 245 >gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 297 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 176 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 10/163 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q S +I+L + + NIG V R F + ++ L P + ++ + + Sbjct: 19 QASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGSTDAV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGR 127 E I L ++ + E A +LN+ ++FG Sbjct: 79 SW-EYAKTTMEVIEKLKI--------KDVKICSIEQAENATMLNDFTVEKNTTYALVFGN 129 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E G+ + S+++I P SLNIS + ++VW+ Sbjct: 130 EVKGVDQNIVNASDSVIEIPQFGTKHSLNISVSCGVVVWDLFS 172 >gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 245 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K + A Sbjct: 93 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFH 152 Query: 68 IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V + A LH + AT++ R+ V G+ VG +FG Sbjct: 153 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 197 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + +++ IS P SLN++ A + ++E + Sbjct: 198 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 242 >gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund 17B] gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium botulinum E3 str. Alaska E43] gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum B str. Eklund 17B] gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium botulinum E3 str. Alaska E43] gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 153 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 29/163 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVID--SVR 72 I+L P++ +N G +AR LT L L+ P EK + + Sbjct: 5 IVLYQPEIPQNTGNIARTCV---LTDSKLHLIKPLGFDIDEKHVRRA--GLDYWKYLDLE 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + + N + L+ A +E F + I+FGRE G+ Sbjct: 60 IHESYEAFME-----------KYKNERIFLSSTHAGDYYSEISFQKGD-FIMFGRESSGV 107 Query: 133 TNEEIALSNAIIS---FPV-NPLFPSLNISQAVLLMVWECMEN 171 + +I+ P+ SLN+S V ++ +E + Sbjct: 108 P----ESIHEVITGMRIPMIQSSTRSLNLSNTVSIVAYEALRQ 146 >gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1] gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1] Length = 157 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 19/161 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71 ++ L +P++ +N G +AR + T+L LV R G+ A D + + Sbjct: 2 IVALFEPEIPQNTGNIARLCAVTD-TKLLLVG-RLGFSISDKYLKRAGMDYWNYLDWEWI 59 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + + + Y ++ + + ++ R F+ +IFG E +G Sbjct: 60 KSINEFFDKYNNKEYSYFFISKFGKKYYTEIS----------REFNFNKSILIFGNESYG 109 Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L E+I S+ + P+ SLN+S +V ++V+ +E Sbjct: 110 L-REDIRNLYSDRLYRIPMKEGMRSLNLSNSVAIVVYHLLE 149 >gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 170 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 +IL P++ N G + R+ +L LV P SEK + + Sbjct: 15 VILWHPEIPPNTGNIGRSCVAVG-AKLWLVRPLGFDISEKQLRRA--GLDYWQHLEWEAV 71 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E A + + L K ++ + +V ++FG E GL Sbjct: 72 DSLDEIRAKI-------PEPFEQQRVWLFTKFGQSRYSDVTYEQGDV-LLFGCESAGLPE 123 Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E ++ S+A + P+ P SLN+S + ++E + + Sbjct: 124 EIVSQFPSSAKLRLPMRPQVRSLNLSSSATAAMYEVIRQIGTPEDA 169 >gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99] Length = 275 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 T ++ + A V + V+ N G + R + L + K +S Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + I V V + A+ A SVL +++ +++ + + Sbjct: 170 AGSIFAIP-VIVAPDTSAALG------ALRGAGLQALASVLDGEKSLDDIDQLLEA--PT 220 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL+ E A ++ + P++ SLN++ A + +++ Sbjct: 221 AWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARA 270 >gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC 23779] gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC 23779] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q + ++ G ER GL E+ A A++S P+ SLN++ A ++++E + Sbjct: 208 QPLILLMGSEREGLDAEQQAQCQALVSIPMRGQADSLNLAVATGVLLYEILAQR 261 >gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas putida BIRD-1] Length = 248 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66 + +++L N+G R T +V P+D + R + A Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 VI V V + L++ ++ T EA + ++ +G V + Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EADQEIYQQDLTGPLV-M 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium denitrificans ATCC 51888] Length = 285 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 12/153 (7%) Query: 7 QLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L +A G P+I+L N+G + R+ F + L + + + S++ A Sbjct: 128 ELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVLAKSASGAL 187 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +I + +NL A+ +L R +++ A E + + ++ Sbjct: 188 ELIPVA-LVANLARAMEEL----------REAGFALVGLDGEAETAIEDLDWSRPTALVM 236 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 G E GL + + + SLN+S Sbjct: 237 GSEGKGLRELTRKTCDTLARISTDGPVASLNVS 269 >gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Glycaspis brimblecombei] gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Diaphorina citri] Length = 239 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 12/148 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R + Q+ + ++ S A ++ +N VR ++++ AI+ Sbjct: 30 PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSNHWV---KVRTHASIENAISAC 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A + + AI +I Q II G+ER G++ + +AL++ I Sbjct: 87 K-----AAGIQILAAHLTN---QAIDFR-QIDYNQPTCIILGQERAGISKQALALADHNI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ + SLN+S A L+++E Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a] Length = 254 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 19/162 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K P II+ + Q N+G + R + + R + +SA A I Sbjct: 106 KPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIA 165 Query: 72 RV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV +K ++Y + +++ SG + ++ G E Sbjct: 166 RVSNLVDTIKTLKKHGVWVYG--------------AEADGTPIDKADLSGA-LALVIGSE 210 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +GL + ++S P+ SLN S ++++E ++ Sbjct: 211 GFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252 >gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 219 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 72/178 (40%), Gaps = 13/178 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++ + N+ + R + ++ V R +++ +S++ A+ +D V++ + Sbjct: 24 TVVMENVNKAHNLAAIIRTCDAVGIPKVHAVALRPEIRTKQ--NSASGANRWVD-VQIHN 80 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + ++ +T R V A F+ + ++ G E G++ Sbjct: 81 STED--------VFSTLRQGGFQIFVAHFSPQATDFRAVDFT-KPTALVVGAEWEGISET 131 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 I+L++ + P+ + SLN+S A +M++E + + AT LL Sbjct: 132 AISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQRTEKGFYDKPRLDE-ATYQRLL 188 >gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01] Length = 227 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82 N+ V R L ++ WP + +SA A ++ V +++ AI Sbjct: 30 PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + ++ V I + II G E+ G + + L+ Sbjct: 84 EL---------KAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAEQ 134 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A ++++E + + +E P Sbjct: 135 DIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178 >gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella chromatophora] Length = 229 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 12/169 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + N+ + R+ + + V+ R+ + + + + + ++ Sbjct: 23 TVILEHVEKSHNLSAILRSCDAVGIIEAHAVSLRERLRIFQNTALGSQKWVRLRN---YN 79 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ AI L + FK + + G E+WGL+ E Sbjct: 80 SIVPAITQL---------KQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQE 130 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 L + I+ P++ + SLN+S A ++++E + V+ + Sbjct: 131 AAELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVAETLPTNGEG 179 >gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus selenitireducens MLS10] Length = 255 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 17/156 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L + + N+G + R + + R + +SA A + RV + Sbjct: 103 VLDELEDPHNLGSILRTADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLA 162 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E + T V E + + ++ G E G++ Sbjct: 163 RTMDELKKQGLWFVGT--------------DAKGDVSYEGMTVDLPLALVIGSEGKGMSR 208 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++S P+ SLN S A L+++E + Sbjct: 209 LVKEKCDFLVSIPLMGKVTSLNASVAASLLMYEVLR 244 >gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium dentium JCVIHMP022] Length = 329 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 10/150 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 178 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 236 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI + + R + L A ++ E F + ++ G E GL+ Sbjct: 237 LTKAIE--------SLKERGYYSIGLDGGGDA-LVGETGFETDPLVVVLGSEGNGLSRLV 287 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + I P++ + SLN S A + ++ Sbjct: 288 RSTCDVIAGIPMSSMVESLNASVAAGITLY 317 >gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803] Length = 456 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 23/167 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78 N+G + R+ + L R + +A A + RV LK Sbjct: 263 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 322 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A + + E E + ++ G E GL+ Sbjct: 323 DA---GYRVVGLA--------------EEGDQTLEEADLEGPLVVVTGSEGQGLSMLTRR 365 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + +I P+ + PSLN S A L ++E S + + Sbjct: 366 HCDQLIRIPLRGVTPSLNASVATALCLYEVARRSWMKGLRGQNPSPQ 412 >gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 251 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 18/182 (9%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +T +++ K P+ +L N G R + + + R + Sbjct: 84 ITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAGVDAVVIPKDRSASINATVSK 143 Query: 60 SSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S+ A VI + V ++KE ++ T + A + Sbjct: 144 VSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGT--------------DDEAEKSIYDLD 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+ G E G+ + ++ P+ + SLN+S A + ++E + + Sbjct: 190 LTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEALRQRLTKV 249 Query: 177 EK 178 K Sbjct: 250 AK 251 >gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 243 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ Q +IIL Q N+G + R +F+ + L +EK S+ A Sbjct: 91 PEQQALTSDKIIILDGVQDPGNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGAL 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ +R + L AI +L +K AI L+ ++ + +I Sbjct: 151 FHLNIIR--TELLTAIEEL---------KEKGYKIYGTSLHEAIPLS-QVHPKKRHALIM 198 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G+ E + ++ + ++ F SLN++ A + ++ Sbjct: 199 GNEGKGVREEILCQTDQNVYIEMD-TFESLNVAVAAAICMY 238 >gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 279 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 7/167 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + K+ +S + Sbjct: 114 EEIVAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 173 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + +++A+A L +A R + L+ G +F Sbjct: 174 FHLPVAVGVP-VEQAVAGLK-----SAGVRILAADGAGEDDLDAELDAGTM-GGPTAWVF 226 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 227 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273 >gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4] gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis SP1PR4] Length = 263 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 10/164 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + L R + +SA A + +V Sbjct: 104 EDPHNLGALLRTADGAGVDGILLPERRSAPITAVVAKTSAGATEHVRIAKVT-------- 155 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + A ++N + + + F+ + ++ G E GL + + Sbjct: 156 --NLVRALERMKKDNIWVIGLDERGTPDYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDY 213 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 ++ P+ SLN+S A ++++E S +Q P Sbjct: 214 LLRIPMAGGVSSLNVSVAGAVVMYEVARQRRAPSAPPPVKQKKP 257 >gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp. sepedonicus] Length = 266 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVN 149 R R VLA L SG +FG E GL +E +AL++ + P+ Sbjct: 182 RVRAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLALADRAVVVPIY 241 Query: 150 PLFPSLNISQAVLLMVWE 167 S+N++ A + ++E Sbjct: 242 GQAESMNLATAASVCLYE 259 >gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43] gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43] Length = 155 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 22/167 (13%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 P+I L P + N G + R + + ++ P S++A + I+ Sbjct: 1 MTKPLIALYQPDIPGNTGAIMRLGACMGIG-IHIIGPAGFDLSDRALKRA--GMDYIEMA 57 Query: 72 RV--FSNLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +E + TT +V + L+ + ++ Sbjct: 58 TLTRHDGWEEFEAWRKAEGRRLVLMTT------KSAVSYMDDTVQTLSAQD------VVL 105 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FGRE G ++ ++ P+ SLN++ +V ++ E Sbjct: 106 FGRESVGAPERVHDAADLRLTIPMIEGRRSLNLAMSVAMVAGEINRR 152 >gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9] Length = 267 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ + R + ++ V WP E R S A A ++ + N+ +AI Sbjct: 63 PNNVSAIIRTADAVGIHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 116 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T + + + AI + + + II G E+ G+T E +A ++ Sbjct: 117 --------TQLKAQGMQILATNLSDTAIDFRD-VDYTKPTAIILGGEKNGITAEALAQAD 167 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + ++ P Sbjct: 168 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 212 >gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD] gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD] Length = 260 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 18/169 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 L ++L Q N+G + R+ + P + S K S A Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163 Query: 65 DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ + +++ +A+A AR V V Sbjct: 164 HFLLS---IHEDVEPDALA---------AR---LDVPVALTDSHGAQAVYDCDLAGPVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 267 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 14/169 (8%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ N V + V N G + R + K +SA Sbjct: 108 SAGKILNGKPNLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAG 167 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + I R N+K+ + L R + +LA V Q Sbjct: 168 SLFHIPVAR-DPNIKDVLGQL----------RKSGMQILATAADGEVDLAEADLSQPTAW 216 Query: 124 IFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E GL E+ ++ + P+ SLN++ A + ++E + Sbjct: 217 LFGNEAHGLG--ELQEEADMRVRIPILGRAESLNLATAASICLYESAKA 263 >gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145] Length = 248 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 23/164 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L + N+G R T +V P+D + R + A I + V + Sbjct: 102 VLDNVTDPHNLGACMRTADAAGAT--AVVVPKDKSAQITPTVRKVACGAVDNIP-LVVVT 158 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL A+ L ++ T A +I + ++ G E G Sbjct: 159 NLARALRTLQDLNVWVVGTAG--------------EADKSLYQIDFKGPLALVMGAEGKG 204 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + + S P++ SLN+S A + ++E + + Sbjct: 205 MRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFEAVRQRHAN 248 >gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50] Length = 174 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 9/137 (6%) Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +S+A V+ + +A+A L + + + A+ E I Sbjct: 6 ASAAAGSNSWVQVKTHRTIGDAVAHL--------KGQGMQILATHLSDNAVDFRE-IDYT 56 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + I+ G+E+ G+T E +AL++ I P+ + SLN+S A L+++E + Sbjct: 57 RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMY 116 Query: 179 NVKEQNTPATKGELLSF 195 + P + + L F Sbjct: 117 LRENSMLPEAEQQRLLF 133 >gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1] Length = 255 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 27/172 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC---- 66 +IIL N+G R+ +V P+D + + A Sbjct: 101 TPLIIILDGVTDPHNLGACLRSADAAGAH--AVVMPKDNSAPLNATVSKVACGAAESIPV 158 Query: 67 --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V + R L++ +I+ T A I+ Sbjct: 159 YAVTNLARTMKKLQD---QGVWIFGTAG--------------EATQTIYEQDLTIPTAIV 201 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + ++ P+ + SLN+S A + ++E + V + Sbjct: 202 MGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEVVRQRAVKA 253 >gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 19/164 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +N++ ++ L N+G + R+ F+ + + R + +A A + Sbjct: 185 RNTSNPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHL 244 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV NL A+ +L + + + + + +I Sbjct: 245 PVSRVV-NLNRALEELKKNGFMVIGLSG--------------DGQLSISKFHEKTPLVVI 289 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E G++ + ++ P+ SLN S A + ++ Sbjct: 290 VGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHL 333 >gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91] gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha C91] Length = 154 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 25/168 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 +IL P++ N G + R N + TQL L+ P S++ + + R V Sbjct: 4 VILHQPEIPPNTGNIIRLCANTS-TQLHLIKPLGFNLSDRQLKRA--GLDYHEWARLTVH 60 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L ++ TT ++ K + +FG E G Sbjct: 61 EDLASCLSLMDGCRIFAVTTKATKHYDKVDYTTDDV---------------FLFGSETCG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E + + I P+ P SLN+S + ++++E + Sbjct: 106 LPVEVLEDFSQDRRIRIPMVPSSRSLNLSNSAAVIIYEAWRQTGFDGG 153 >gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149 T +NR ++P++ A +L + + V ++FG E+ G+T E + ++ ++ P+ Sbjct: 132 TEIKNRGYKILAVSPEKNATMLPDYQLK-EPVALVFGTEKEGVTEEILDFADETVAIPMY 190 Query: 150 PLFPSLNISQAVLLMVWECMENSIVS 175 S N+S A + +E + I S Sbjct: 191 GFTRSFNVSVAAAICFYELKQKLIRS 216 >gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198] Length = 367 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 19/151 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80 N+G + R+ +F + +++P A R++ A+ + ID+ L + Sbjct: 229 PHNVGAIMRSCAHFGVKG--VISPDSAVLESGAAVRTAEGGAEYIQGIDADNFAQTLDKF 286 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + AT++ + + + +I G+E+ GL+ + Sbjct: 287 KKAGYTLVATSSHKGSVP-------------LSKAQLPAKMVLILGQEKDGLSESTLNQG 333 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I SLN+S A +++ E Sbjct: 334 DMSIYIGGTGHVESLNVSVASGVLLAEWWRQ 364 >gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10] gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10] Length = 266 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 32/175 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G V++L Q N+G + R+ + L + K S+ + + Sbjct: 113 NGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHL---- 168 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---------- 122 L+ + + +E L + GQ Sbjct: 169 --PVLE----------------GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW 210 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ E AL + I P+ SLN + A ++++E + ++E Sbjct: 211 IVIGSEGRGVSPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265 >gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus pseudintermedius HKU10-03] gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus pseudintermedius ED99] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 17/169 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A Q Q V+IL + N+G + R + + + R ++ +S A Sbjct: 86 AEQAQKEGLSTVLILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGA 145 Query: 65 DCVIDSVRVF--SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +RV S + + D + I A N +++ + + + Sbjct: 146 IQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASNATDYRQM--------------QADMPL 191 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ G E G++ + I P+ SLN S A LM++E Sbjct: 192 AIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 240 >gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum SS9] Length = 234 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81 N+ + R + ++ V WP E R S A A ++ + N+ +AI Sbjct: 30 PNNVSAIIRTADAVGIHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T + + + AI + + + II G E+ G+T E +A ++ Sbjct: 84 --------TQLKAQGMQILATNLSDTAIDFRD-VDYTKPTAIILGGEKNGITAEALAQAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + ++ P Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179 >gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP18-BS74] gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pneumoniae 670-6B] Length = 242 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++IL N+G + R N++ + + R + ++ A Sbjct: 88 KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + + + + T ++ G + + Sbjct: 148 HVPIARVTNLNQTLYKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G+++ + +I+ P+N SLN S A ++++E N + Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group] Length = 168 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 33/151 (21%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82 N+G +AR+ F + ++ +V RD + S A + R F++L A A Sbjct: 20 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASLPLARAYLK 73 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + A+ + F ++ +FG E GL+ +E + Sbjct: 74 DERGCDICG-------------VEITHNALPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 119 Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166 + + P + SLN++ A +++ Sbjct: 120 CDFFVYIP---QYGGGTASLNVTVAASIVLH 147 >gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 11/148 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V N G V R + L + K +SA + I + Sbjct: 104 VGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHD---- 159 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + VLA V + + +FG E GL + +AL Sbjct: 160 -------AVGVVTQLKGSGLQVLATVLGGSVPLDEVDLSGPTAWLFGPEAHGLPADVVAL 212 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWE 167 + A + P+ SLN++ A + +++ Sbjct: 213 ATAGVEIPMAGGAESLNVASAAAICLYQ 240 >gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P ++ +SAK +L ENIG + R + + L + ++ S Sbjct: 100 PEVSEIVDSAKTIA-VLEGVGDHENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSM 158 Query: 63 NADCVIDSVRVFSNLK------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + + +A+AD F L P A+ L E + Sbjct: 159 GHVLRLPFAHLEGGFTTWQRSLQALADASFTL-----------ISLTPNPEAVHLAEAMH 207 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E GLT + ++ P+ P SLN++ A + +E + Sbjct: 208 GLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLNVATAAAISFYERQRS 262 >gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas asaccharolytica DSM 20707] Length = 247 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%) Query: 6 PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57 P L + + P I+L V N G +AR + +V P S A Sbjct: 87 PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVH--AIVIPERDSVSVTADA 139 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++SA A + + V ++ + F+ R++ ++ A + Sbjct: 140 VNASAGA---LMRIPVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +GI+ G E+ G++ + +S P SLN+S A +M++E + + Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246 >gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287] Length = 283 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 24/158 (15%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R N+ + + NP+ + SS + + E I Sbjct: 141 PEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GSTTEVI 198 Query: 82 ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L + A TA K + + I+ G E GLT E Sbjct: 199 DFLKAKGINSYCAALTA-----SKPYY-----------EVSFKKASAIVVGTEDQGLTEE 242 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + S I P+ + S+N+S A ++++E + Sbjct: 243 WLTHSTQNIIIPMEGIIDSMNVSVAAAVLIFEAKRQRV 280 >gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 243 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R+ + + + R + A+ + A + +RV + Sbjct: 99 ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156 Query: 78 KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A T R N V EA L + G + ++ G E G+ Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGIRRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +IS P+ SLN+S A + ++E + Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242 >gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 23/171 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G +I + Q N+G + R F + +N + K +S + I Sbjct: 104 EGVYVIADNVQDPGNLGTIIRTADAFGADAVFTINNSVDIYNPKVLRASMGSIFHIP--- 160 Query: 73 VFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + E + L ++AT + V + I G E Sbjct: 161 VIATANEVLYKLKGKGVKVFATHLKGEKFVHEV--------------EIDKGTAFILGNE 206 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G+++ + + I P+ SLN+S A + ++E ++ +++N Sbjct: 207 ARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIKNKQN 255 >gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R] gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R] Length = 276 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 27/173 (15%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A L+N+ V++L ENIG + R + + N + S Sbjct: 115 AQVLENART--VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGH 172 Query: 65 DCVIDSVRVFSN----------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + + LKEA H + L P A L + Sbjct: 173 VLRLPFAHLEGTYTTWQRSLEQLKEA--GFHLV-------------SLTPDPEAEHLEDA 217 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + V ++ G E GLT + ++ P+ P SLN++ + + +E Sbjct: 218 LAGKDKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 270 >gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 23/179 (12%) Query: 7 QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62 +L + +G +++L N+G R ++ P+D A + ++ Sbjct: 87 ELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + V + L+E ++ T + A + Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQNLYQADFKG 190 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249 >gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 20/167 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68 A ++IL + N+G R+ + Q +V PR + A ++ A + Sbjct: 97 PASPLLLILENVTDPHNLGACLRSADAAGV-QAVIV-PRRNAAGLTPVACRTAVGAAESL 154 Query: 69 DSVRV--FSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++L + + D ++ T R+ P E ++ I+ Sbjct: 155 VYYEIGNLASLLDQLRDRGVWVVGTALEERSESLFTFQPPE-------------SLAIVM 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + ++ P+ SLN+S A +M+++ Sbjct: 202 GAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248 >gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4] gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4] Length = 260 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 A L ++L Q N+G + R+ + P + S K S Sbjct: 104 AQPLPARVTDTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162 Query: 64 ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + +++ +A+A+ V V Sbjct: 163 AHFLLS---IHEDVEPDALAE------------RLDVPVALTDSHGAQAVYDCDLSGPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 247 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 28/199 (14%) Query: 7 QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64 ++ N + +L++ N V R F + + +V + + P+ + Sbjct: 40 EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ ++K AIADL +YA + V I Q Sbjct: 97 -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYLGEETIPVSD-----------IDLSQP 142 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++FG E G++ E + L++ P+ S NIS A L +++ E + + ++ Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201 Query: 181 KEQNTPATKGELLSFLDYL 199 E + + Sbjct: 202 ----YYLLPEEKKALYEQW 216 >gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 292 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ + LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 264 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 24/148 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R + + L+ S + ++ + + V+ +E IAD Sbjct: 130 PGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKC--TREEFIADR 187 Query: 85 HF----IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + T TA++ + P ++ G E+ GLT E Sbjct: 188 GRWTGSVVGTLLTAKHDHRSAPYKRP----------------TLLLMGTEQSGLTPEIAD 231 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + P+ SLN+S A +M++ Sbjct: 232 TCDLHVKIPMRGRADSLNLSVATGIMIY 259 >gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB 8052] Length = 260 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 23/155 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSN 76 Q N+G + R + ++ L +EK S+ + I +++ + Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK + + + ++N F++ L V + G E G++ E Sbjct: 180 LKG--KGFNLVVTSLDTDKNFFQADLR---------------GRVLLTVGNEGNGVSREV 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +++ + P+ SLN++ A ++++E + Sbjct: 223 LEMADTKVKIPMPGNAESLNVAVASSVIMYEKVRQ 257 >gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 268 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 17/152 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK------E 79 ENIG + R + + L + ++ S + + + Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+AD F L P A+ L E + V ++ G E GLT + Sbjct: 182 ALADASFTL-----------ISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKA 230 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P+ P SLN++ A + +E + Sbjct: 231 TDIRARIPMAPGTDSLNVATAAAISFYERQRS 262 >gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon phaeoclathratiforme BU-1] Length = 248 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 ++L NIG + R + LV + + +SA A + +R+ Sbjct: 102 VVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGA---LSHMRICKV 158 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L A+ LH VLA A + ++ I+ G E G+ Sbjct: 159 KSLVRALELLHQC----------NVQVLAADMEAELNYTDADMKKSTAIVLGMEGSGIAP 208 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E + + ++ P+ SLN+S ++++E M + Sbjct: 209 EALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAMRQRLA 248 >gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme BU-1] Length = 180 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 28/163 (17%) Query: 21 DPQLG-----ENIGMVARAMWNFN----------LTQLRLVNPRDGWPSEKARSSSANAD 65 P+ NI R+MWN + ++ L P ++ ++ A Sbjct: 23 SPKHPLVLMLHNI----RSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQ 78 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++ EA+ + + L E + + ++ Sbjct: 79 DTVVW-EYHADPLEAV--------CSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVV 129 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E GL NE + + ++ P SLN++ A + ++E Sbjct: 130 GNEVDGLENEILDSCDDVLEIPQYGTKHSLNVAVAAGIALFEL 172 >gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750] Length = 279 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%) Query: 14 GPVIILVD-PQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCVI 68 P++ILV+ Q N+G + R +T + + + + K S+ + + Sbjct: 129 NPLLILVENLQDPGNLGTILR----MGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRV 184 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + +A++ +N L E G + G E Sbjct: 185 PFV-YVQDFSDAVSQC--------KNAGIKVYAAHLDGKNTYLGEDYREG--TAFLIGNE 233 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GLT + ++ +I P+ SLN + A ++ +E + Sbjct: 234 GNGLTEDITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQR 277 >gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 261 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 21/155 (13%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R + + + NP+ + SS VF+ Sbjct: 123 PEKPGNIGALLRTADAAGVDAVIIANPKTDLYNPNIIRSSVG--------CVFTT----- 169 Query: 82 ADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 TTA + +V + V I+ G E GL+ +E Sbjct: 170 ---QIATGTTAEVISFLQEKGIAVYSAILQEAVDYAAQDYTTPTAIVVGTEATGLS-QEW 225 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ S+N+S A ++V+E Sbjct: 226 RTVGTNIKIPMRGKIDSMNVSVAAGILVFEARRQR 260 >gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus equinus ATCC 9812] Length = 276 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R N+T + + R + +S A + Sbjct: 126 ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIA 185 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T + + + + + +I G E Sbjct: 186 RVTNLSQTLDKLKEQGFWVFGT---------------DMNGTSSHKWNTSGKLALIIGNE 230 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E + + Sbjct: 231 GKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKV 275 >gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cellulosilyticus DSM 2522] Length = 252 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75 L + + N+G + R + + R + +SA A + RV + Sbjct: 104 LDELEDPHNLGSILRTADAVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLAR 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + E + + T A+ +++ V V ++ G E G++ Sbjct: 164 TMDELKKEGLWFVGTDAKGEQDYREVDL--------------DMPVVLVIGSEGRGISRL 209 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P+ SLN S A L+++E K Sbjct: 210 VKEKCDFLVQIPLAGKVTSLNASVAASLLMYEVYRRRFPQGLK 252 >gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 236 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 18/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAI 81 N+ + R + ++ V W +E+ R +SA + ++ + +N+ +A+ Sbjct: 30 PNNVSAIIRTADAVGVHKVHAV-----WQAEQLRLHSHTSAGSRNWVE-LETHANITDAV 83 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + E A+ E I + II G E+ G+T E +AL++ Sbjct: 84 H--------AMKAQGMQVLATNLSERAVDFRE-IDYTKPTAIILGGEKHGITPEALALAD 134 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ + SLN+S A L+++E + E P Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRTETLLP 179 >gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis DSM 16069] Length = 246 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 29/180 (16%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARS 59 + P+L + IL+ N+G R+ + ++ P+D S + R Sbjct: 85 HIPELLSQIDEAPFILILDGVTDPHNLGACLRSADAAGVH--MVIAPKDNAASITDVVRK 142 Query: 60 SSANADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 + A V + VR L+EA +I T A Sbjct: 143 VACGAAETVPFIPVTNLVRAMKQLQEA---GVWIAGTAG--------------EAEQDIY 185 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + I+ G E G+ + +I P+ SLN+S A + ++E + I Sbjct: 186 QANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFEAVRQRI 245 >gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2] gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter eiseniae EF01-2] Length = 248 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 23/174 (13%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--S 61 +LQ + GP ++LV N+G R ++ P+D A + + Sbjct: 90 EKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVA 147 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + A + V + L E + T + A ++ Sbjct: 148 SGAAETMPYFMVTNLARTLDELKERSIWCIGTC--------------DDAPGTLYQLDLK 193 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G+ + + P+ SLN+S A + ++E + Sbjct: 194 GPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEALRQR 247 >gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis PC909] gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1] Length = 276 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 19/158 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + + R + S A I V + Sbjct: 127 IIILDGLEDPHNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACV-A 185 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL AI L +I T A +++++ + +G++ G E G Sbjct: 186 NLTVAINQLKEAGLWIAGTDASEAQDYRTL--------------DATLPLGLVIGSEGKG 231 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ + + P+ SLN S A L+++E Sbjct: 232 MSRLVREACDFKVYLPMRGHVTSLNASVAAALLMYEIY 269 >gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429] Length = 233 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 +IL + + N+G + R + + + R ++ +S A + RV Sbjct: 85 VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEYVPVARVVNI 144 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + +I+ T + + + V I+ G E G++ Sbjct: 145 NNTIDKLKKANFWIFGTDMKGADYNDW---------------NADGPVAIVIGNEGKGIS 189 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +++ P+ SLN S A L++++ Sbjct: 190 AQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQ 223 >gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099] Length = 235 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 13/169 (7%) Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P+ ++ ++LV N+G + R+ F L S S Sbjct: 72 PLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKS 131 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A ID + V NL +A+ LH F+++ + L E F+G Sbjct: 132 ASGALEHIDQIEV-KNLADALGQLH---------EAGFQTIGLDSDGPAEL-ETSFAGDR 180 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + ++ G E GL + + + SLN+S A + ++ Sbjct: 181 IALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229 >gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis ATCC 19624] gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis ATCC 19624] Length = 154 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 17/165 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+LV P++ N G V R N L L+ P ++ + + V Sbjct: 3 RIVLVHPEIPPNTGNVIRLAANTGCA-LHLIEPLGFAMEDRLLKRA--GLDYHEYAEVRR 59 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + +++ R L + +V + G ++FG E GL Sbjct: 60 HADWEAFLSE--------ERPNPERMFALTTRGTGVVHDSAFLPGDW--LVFGAETSGLP 109 Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 A + P+ SLN+S AV + V+E + +S Sbjct: 110 PGVRAQFAPERQLKLPMRAGQRSLNLSNAVAVTVFEAWRQNGFAS 154 >gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium HTCC5015] Length = 225 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 19/210 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L+ +++ + N + R+ + + V P G + + A+ Sbjct: 12 TLKRRQTSLTVVMENVHKPHNFSAIVRSCEAVGVHRAHAVYPEGGIGNNAGTTVGAHKWV 71 Query: 67 VIDSVRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +D+ R + + + A E A+ E + Q ++ Sbjct: 72 QVDTHRNIQTPFQQLKAQGFQLLTA-------------HLDETAVDFRE-VDYTQPTAVV 117 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E G++ E L++ I P+ L SLN+S A L+++E ++ E + Sbjct: 118 MGSELHGISEEAAQLADHSIVIPMLGLTESLNVSVATALILFEAQRQRQLAGMYEQPELD 177 Query: 185 TPATKGEL--LSFLDYLEISLEERGYFRPV 212 AT+ L L + RG P Sbjct: 178 E-ATRKTLMFEWAYPDLARRYQSRGEPYPE 206 >gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 19/177 (10%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARS 59 TP A + ++L Q N+G + R+ + Q +P W S K Sbjct: 104 TPVA-SAPKALTESAVLLDGLQDPGNLGSILRSAAAAGVRQ-VFCSPGTVAAW-SPKVLR 160 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + A V+D + D + A A +R +LA A Sbjct: 161 AGMGAHFVLD----------IVEDADLV-ALCAASR---IPLLATSSHAAQTIYDCDLSG 206 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V + G E G++ + + P SLN++ A + ++E + Sbjct: 207 PVAWLLGHEGQGVSAALQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRTAGR 263 >gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 263 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 19/170 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGM---VARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + + +G +++L + N+G ARAM + L++ + K ++ Sbjct: 104 ETVHPERGLILVLDEIHDPGNVGTMIRTARAMNAQGV---ILLSGSADLYNPKVVRAAMG 160 Query: 64 ADCVIDSVRVFSNL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + VF+ + ++A+ T + + V + A L + + Q Sbjct: 161 N---LFHIPVFTGITEDAL--------MTFAQKAGWTLVATALDGAADLRDFTYP-QKTL 208 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +I G E G+++ + S A + P+ SLN+ A ++++E M Sbjct: 209 LIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNVGVAAGILLYEAMVQQ 258 >gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14] gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum subsp. pallidum str. Chicago] Length = 292 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73 V++L N+G + R+ F++ + L P +E SA A + VRV Sbjct: 133 VLVLDAITDPHNVGAIVRSADQFSVDAVLL--PHHHGAGGTETITRVSAGAVAWVPLVRV 190 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + T + + + A + R F ++ G E G++ Sbjct: 191 RN-----------LVRTAGILKRSGFWLYGADVAGEAIGARTFP-PKTALVLGNEGHGVS 238 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +A+IS P SLN+S A ++++E + Sbjct: 239 PLLRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSP 280 >gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays] Length = 163 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 33/151 (21%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82 N+G +AR+ F + ++ +V RD + S A + R F +L A A Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + A + F ++ +FG E GL+ +E + Sbjct: 72 DERGCDICG-------------VEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 117 Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166 + + P + SLN++ A +++ Sbjct: 118 CDFFVYIP---QYGGGTASLNVTVAASIVLH 145 >gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis subsp. hominis C80] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 IIILDGLEDPHNLGSIIRTADASGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156 Query: 76 N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +++ A N +++++ + + I+ G E G+ Sbjct: 157 LSKIIDELKDNGYWVAGAEADNATDYRNM--------------AADMPLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I P+ SLN S A LM++E Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240 >gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp. MP5ACTX8] Length = 267 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 28/193 (14%) Query: 4 YAPQLQNSAKGPV-----IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEK 56 L N+ GP + L + N+G + R+ + +V P R S Sbjct: 83 ALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSADGSGIDG-VIV-PERRSAPLSAT 140 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLN 112 SSA A + +V N+ A+ + +I R P Sbjct: 141 VAKSSAGASEHVRIAQVV-NITRALETMKKHNVWIVGLDERG--------TPDYTDFDFR 191 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q+ ++ G E GL + ++ P+ SLN+S A ++++E M Sbjct: 192 ------QDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMYEAMRQR 245 Query: 173 IVSSEKNVKEQNT 185 + + T Sbjct: 246 RSGAVQAPAASKT 258 >gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni] gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni] Length = 338 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 31/170 (18%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLH 85 N G + R+ F ++ + L PS S A + ++ F L + + D+ Sbjct: 156 NFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESIL-----FYRLTDTVMDMK 210 Query: 86 -------FIYATTARNR------NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 I T ++ + +L P E + + + + G E GL Sbjct: 211 SLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPLILALGSESRGL 270 Query: 133 TNEEIALSNAIISFPVNPLF------------PSLNISQAVLLMVWECME 170 + + + ++ P SLN+S A +++++ Sbjct: 271 SENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGILLYQLTM 320 >gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas mediterranea MMB-1] Length = 253 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 27/172 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC---- 66 +IIL N+G R+ +V P+D + + A Sbjct: 101 TPLIIILDGITDPHNLGACLRSADAAGAH--AVVMPKDKSAPLNATVSKVACGAAESMPV 158 Query: 67 --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V + R L++ +I+ T A + I+ Sbjct: 159 FAVTNLARTMKKLQD---QGVWIFGTAG--------------EATDMLYDHDLTIPTAIV 201 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + ++ P+ + SLN+S A + ++E + + Sbjct: 202 MGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEAVRQRTNKA 253 >gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays] Length = 163 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 33/151 (21%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82 N+G +AR+ F + ++ +V RD + S A + R F +L A A Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + A + F ++ +FG E GL+ +E + Sbjct: 72 DERGCDICG-------------VEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 117 Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166 + + P + SLN++ A +++ Sbjct: 118 CDFFVYIP---QYGGGTASLNVTVAASIVLH 145 >gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2] Length = 291 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 7/144 (4%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G R+ N+ LV+P P +A S + R+ ++ D Sbjct: 137 NVGAAFRSAAALNV-DAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQD-- 193 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 T R + LA + +I L++ I + + + FG E GL++ I + I+ Sbjct: 194 --GMATLRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIV 251 Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168 P+ SLN++ A ++ W+ Sbjct: 252 RIPMAGGVDSLNVAAASAVVFWQL 275 >gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus anginosus F0211] Length = 242 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 20/165 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +NL +A+ L +I+ T + +G + +I G E Sbjct: 154 V-TNLSQALDKLKHAGFWIFGT--------------DMNGTPSTKWNTAG-KLALIIGNE 197 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 198 GKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3] gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3] Length = 247 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + I + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247 >gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Synechococcus sp. RS9917] Length = 504 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 23/167 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78 N+G + R+ + L R + +A A + RV +LK Sbjct: 285 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLK 344 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A ++ V +E + L E G V ++ G E GL+ Sbjct: 345 DA----------------GYRVVGLAEEGDLTLAEADLEGPLV-VVTGSEGDGLSLLTRR 387 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + +I P+ + PSLN S A L ++E + + Sbjct: 388 HCDQLIRIPLRGITPSLNASVATALCLYEVARRGWMKDLRGQAPSPA 434 >gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio ammonificans HB-1] Length = 239 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 30/167 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + N+G + R+ F +T + + R +E +S A + V ++ Sbjct: 94 LDRIEDPHNLGAIFRSADAFKVTGIVIPRDRSVTVTETVAKTSTGALFYVPFA-VVNSFV 152 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGRER 129 A+ + KE L G+ + G++ G E Sbjct: 153 TALREF--------------------KEMGGWLVGLEAGGKPLSKFEFPFPLGLVAGSEG 192 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + + ++ + SLN+S AV + +++ ++S Sbjct: 193 RGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYINS 239 >gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 273 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 23/175 (13%) Query: 7 QLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L+ +AK P + LV P+ NIG + R + + + NP+ + SS Sbjct: 116 ALKVTAKNP-LYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRSSVGG 174 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQN 120 VF+ + T+ + ++ A AA + + + Sbjct: 175 --------VFT--------VAVAMGTSKEVLDFLQAAKANVYAAALQASKPHTEVSYTGT 218 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E GL + SN I P+ S+N+S A ++++E + +S Sbjct: 219 TAIVVGTEATGLEAIWLEQSNQNIRIPMRGKIDSMNVSVAAGILIFEAIRQRDIS 273 >gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201] Length = 275 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ ++ LV PR P +A S + VR L+ ADL Sbjct: 139 NVGAIFRSAAALDV-DAVLVTPRCADPLYRRAVRVSMGTVFQVPWVR----LEHWTADLQ 193 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + ++ + LA + A+ ++ + + +I G E GL + ++ + Sbjct: 194 RV-----KDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAATLHHADRHV 248 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P++ SLN++ A + WE Sbjct: 249 IIPMSHGVDSLNVAAASAVAFWETR 273 >gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62 L +K PV+IL+ N+G R+ + +V P+D + + Sbjct: 88 TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSANITPVVSKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A I VRV +NL A+ +I+ A L + Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N+ ++ G E GL + + S P+ SLN+S A + ++E + E Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249 >gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 21/190 (11%) Query: 3 PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56 P A +L +A+G V++L D N+G V R+ + LV P P + Sbjct: 117 PRADELLATARGGAPARRVVVLEDLVDHTNVGAVFRSAAALGV-DAVLVTPSCADPLYRR 175 Query: 57 ARSSSANADCVIDSVRVFSNLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 + S + R L+ A+ F A A + P + L Sbjct: 176 SVRVSMGTVFQVPWTR----LEAWPDMGALHGAGFTVAALALSDEA-----VPLDDFAAL 226 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G + ++ G E GL IA S+ + P+ SLN++ A ++ W Sbjct: 227 PVLAAPGAKLAMVMGTEGDGLGRRTIAASDYTVRIPMEHGVDSLNVAAASAVVFWATRGV 286 Query: 172 SIVSSEKNVK 181 +S Sbjct: 287 GARTSGPAAG 296 >gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus gallolyticus UCN34] gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R N+T + + R + +S A + Sbjct: 99 ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T ++ SG + +I G E Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTSG-KLALIIGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E + I Sbjct: 204 GKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKI 248 >gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 21/174 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---E 79 + N+ + R+ + + VN P+ S++ + I ++ S+++ + Sbjct: 46 EKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFN--STAQGSQKWIP-LKEHSSIEVAVK 102 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 AI D F +Y T + + ++ + + G E+WGL+ Sbjct: 103 AIKDSGFRLYGT-----HLGGNARDYRDCDFC--------EPTAFVLGAEKWGLSKLATP 149 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191 L + I P++ + SLN+S A +++E + + E PA + Sbjct: 150 LMDEGIFIPMSGMVQSLNVSVAAATLLFEALRQRRLAGIAPQAGEGLEPALYQQ 203 >gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 325 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%) Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 R L P + A++L E + Q +I G E GLT + S+ P+ P Sbjct: 225 QRGYRCVALTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTD 284 Query: 154 SLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 SLN++ A + +E SIV + ++ Sbjct: 285 SLNVATAAAMGFYERARTSIVGCGRPLRPAR 315 >gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 251 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 17/157 (10%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FS 75 L + + N+G + R + + R + +SA A + RV Sbjct: 101 LDELEDPHNLGSIMRTADAVGAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVR 160 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E +I T A + +F+ + + I+ G E G++ Sbjct: 161 TMEELKERGVWIAGTDASAKQDFR--------------QGDYTMPLAIVIGSEGKGMSRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + S P+ SLN S A L+++E + Sbjct: 207 VRENCDFLYSLPMAGNVTSLNASVAAALLMYEVYRSR 243 >gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 371 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 19/151 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R +F + L +V S A ++ A+ + A+ + Sbjct: 234 PHNLGGIMRTCAHFGVKGL-MVQDASMLESGAAVRTAEGGAEHI--QAIDADGFDGALDE 290 Query: 84 LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + TT+ ++ + + + ++ G+ER GL+ + Sbjct: 291 FRRAGYTIVTTSSHKGTTP------------LTKATLPKKMVLVLGQERDGLSETVMQQG 338 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLN+S A +++ E Sbjct: 339 DLSLSIGGTGQVESLNVSVATGILLAEWWRQ 369 >gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum PSI07] Length = 259 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 21/168 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + + +IL Q N+G + R + + + S K ++ A Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166 Query: 68 IDSVRVFSNLKEAIADLHF-IYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++ V + A LH + AT+ AR + P VG + Sbjct: 167 LNIVEHC-TFESVHARLHVPLLATSSHARQAVFDVPLHKP----------------VGWV 209 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + +++ IS P SLN++ A + ++E + Sbjct: 210 LGNEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256 >gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora erythraea NRRL 2338] Length = 287 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R+ + L P+ A+ L E V ++ G E GLT + IA ++ + P+ Sbjct: 209 RDGGFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGV 268 Query: 153 PSLNISQAVLLMVW 166 SLN++ A + Sbjct: 269 DSLNVATAGAIAFH 282 >gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 283 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + KA +S + Sbjct: 111 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSL 170 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++ A+ L A R + L +R G +F Sbjct: 171 FHLPVAVGV-TVERAVGGLRD-----AGVRVLAADGAGADDLDDEL-DRGTMGTPTAWVF 223 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 224 GNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQRAAGG 275 >gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 256 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 +IL D N+G + R N + L +EK ++ + ++ Sbjct: 109 VILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEKS 168 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + LKE NN+ + + +L +I + +IFG E G Sbjct: 169 EIINFLKE----------------NNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNG 212 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++++ I +++ P+ SLN++ A +++++ E Sbjct: 213 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251 >gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga ochracea DSM 7271] Length = 244 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 25/173 (14%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANAD 65 ++ A ++L N G + R ++ + + P+ G S A +SA A Sbjct: 90 TESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAV 147 Query: 66 CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +V NL +A+ + + + AT +L ++ + Sbjct: 148 FRVPICKV-ENLVDAVYYLQGSGIRVVAAT-----EKTSQLLYTEDFTV----------P 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E G++ + + ++ P+ SLN+S A + ++E ++ + Sbjct: 192 TAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQRL 244 >gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 261 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 +IL D N+G + R N + L +EK ++ + ++ Sbjct: 114 VILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEKS 173 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + LKE NN+ + + +L +I + +IFG E G Sbjct: 174 EIINFLKE----------------NNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNG 217 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++++ I +++ P+ SLN++ A +++++ E Sbjct: 218 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256 >gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 265 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 17/149 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVN---PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 +N+G + R+ F L L + P+ KA + + V V + L E I Sbjct: 128 PQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALDELI 187 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + VL G V ++ G E GL + Sbjct: 188 DAGWRTVGLAGGGERSLGEVLD--------------GSPVVLVLGSEGEGLRRLVAERCD 233 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + P+ F SLN+S A + ++E Sbjct: 234 ELARIPMPGGFESLNVSNAAAIALYEASR 262 >gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM 17244] gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM 17244] Length = 155 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 38/169 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+L +P++ +N G + R + T+L L+ P +K + D V+ Sbjct: 4 IVLFNPEIPQNTGNIVRTCAVTD-TKLHLIKPLGFSIKDKYLKRA--GLDYWDEATISVY 60 Query: 75 SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N ++ + D+ +Y T + N+ +N +FG E GL Sbjct: 61 ENFEDFLDKNDVKNLYLLTTKGDKNYTDFKF--------------EENDYFMFGAETKGL 106 Query: 133 TNEEIALSNAI--------ISFPVNPL--FPSLNISQAVLLMVWECMEN 171 + I + P+ P LN+S +V ++++E + Sbjct: 107 P-------DYIHQKYPSTRLRIPMIPKENARCLNLSNSVAVLLYEALRQ 148 >gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2] Length = 296 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 96 NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155 + + P ++ + L R +FG E WG+ E++ L ++ + P+ SL Sbjct: 224 DQSHDIHHPWDSGLDLTAR------TTWVFGNEAWGMRTEDLELCDSSAAVPIYGKAESL 277 Query: 156 NISQAVLLMVWECMENS 172 N++ A + ++E N Sbjct: 278 NLATAASVCIYESARNQ 294 >gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472] gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 22/176 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N ++ P++ IL N+G R ++ P+D + + A Sbjct: 89 LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAH--AVIAPKDRSATLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 V+ + V + L++ +I TT A + + Sbjct: 147 AEVVPYITVTNLARTLRDLKDAGVWIAGTT--------------MEADTDLYHFDASGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G+ + ++S P+ SLN+S + +++ E ++ + Sbjct: 193 AWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQRVLKAG 248 >gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19] Length = 257 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 15/144 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R F + + L KA S + +RV NL EA+ Sbjct: 129 NMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQVPHIRV-PNLVEAL----- 182 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 L+P + V+ + + + +FG E GL E +A + + Sbjct: 183 ------TAHGVAPYALSP--SGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAACTS-VRI 233 Query: 147 PVNPLFPSLNISQAVLLMVWECME 170 ++ F SLN++ ++++ Sbjct: 234 DMHGGFDSLNVATTSGIVLYHMCR 257 >gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771] Length = 343 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 21/174 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R + Sbjct: 54 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 111 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + + AT +++++ K + + ++ G E+ G Sbjct: 112 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPIVLLMGNEQSG 157 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 L + ++A+ P SLN++ A +M++E S ++ + EQ Sbjct: 158 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRPSPLTCRGQMTEQTY 211 >gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 229 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + E SS+ A + Sbjct: 85 IVMLCGISDVGNIGAIIRTAYALGVDGLLFIG--KNLAQESIVRSSSGAALDLPICLSND 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ +L + + ++ F +I G E +GL+++ Sbjct: 143 AL-SALNEL----------KQMEFKLYGADGKGREVHHLTFPKGKKVLIMGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I + + + F SLN+S A ++ Sbjct: 192 IIQKCDECVGIAMQNDFDSLNVSAAFAILC 221 >gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 242 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 27/164 (16%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L L N + + K ++ + + V Sbjct: 96 EGVIVALDNVQDPGNLGTIIRLCDWFGVETL-LCNTQTVDCYNPKVVQATMGS---LTRV 151 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V DL TTA V L F ++ +I G E G Sbjct: 152 AVH------YLDLAAFLTTTA------LPVYTMDLEGENLYTATFP-KDCILILGNEANG 198 Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECM 169 +++E ALSN +I+ P F SLN++ A +++ E M Sbjct: 199 ISSEVRALSNEVITIP---RFSQHQRTESLNVAMAGAIILSEVM 239 >gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101] Length = 231 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 63/193 (32%), Gaps = 20/193 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L ++L N+ + R + + +V+ + + +A Sbjct: 15 LNRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVS---LPGRPRTFNKTAKGSQK 71 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +++ + L IY T + ++ Sbjct: 72 WVPLHPHPSIETCLNGLKEKGFRIYGT-----HLSVDARDYRDCDFT--------GPSCF 118 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G E+WG+++E +A+ + + P+ + SLN+S A +++E + + + + Sbjct: 119 LMGAEKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRERAGLVPSQGE 178 Query: 184 NTPATKGELLSFL 196 P L Sbjct: 179 GVPGGAEAYRQLL 191 >gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 19/155 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL- 84 N+G + R F+ + + R + +SA A I V+V SN+ AI +L Sbjct: 109 HNLGAIIRTAEAFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKV-SNINNAINNLK 167 Query: 85 ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I ++ A V + + V I+ G E G++ + Sbjct: 168 KQGVWIVGSS--------------LDADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ SLN S A + ++E + + + Sbjct: 214 YIAKIPMRGNINSLNASVAASIFMYEVIRQRMGKA 248 >gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae ATCC 35236] Length = 296 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 12/152 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 157 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 214 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 215 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 264 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 S SLN+S A +++ E + + Sbjct: 265 SIGGTGKVESLNVSVATGILLAEWWRQNTLRP 296 >gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group] gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group] gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group] gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group] Length = 224 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 33/151 (21%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82 N+G +AR+ F + ++ +V RD + S A + R F++L A A Sbjct: 22 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASLPLARAYLK 75 Query: 83 ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + A+ + F ++ +FG E GL+ +E + Sbjct: 76 DERGCDICG-------------VEITHNALPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 121 Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166 + + P + SLN++ A +++ Sbjct: 122 CDFFVYIP---QYGGGTASLNVTVAASIVLH 149 >gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I] gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS] Length = 257 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L ++ Q N+G + R + ++ L S K S A Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162 Query: 66 CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + +L EA+ D+ + T AR+ + + + L + Sbjct: 163 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPAR---------------C 204 Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172 +FG E G+ + + + P + SLN+ A + ++E Sbjct: 205 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256 >gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21] Length = 176 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 13/171 (7%) Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + + K PV ++L + N+G V R F + ++ L P ++ Sbjct: 7 PSVDEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTA 66 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQ 119 A + + N++EAI +L + K + + + R G+ Sbjct: 67 LGATQSVAW-QYEKNIEEAIINL---------KQEGKKIIAIEQAEGSTMLHRFTPVLGE 116 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +IFG E G++ E + L + + P S N+ + +++W+ Sbjct: 117 SYALIFGNEVNGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYR 167 >gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum DSM 5476] Length = 258 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 12/166 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VII + + N+G + R + + R + +SA A + RV S Sbjct: 105 VIIADEIEDPHNLGALIRTAECAGAHGILIPKRRSASLTPIVSKTSAGAVSYLPVARV-S 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL I R + V FSG V ++ G E GL Sbjct: 164 NLALEID----------RLKERGIWVYGADMDGENWCATDFSGG-VALVVGSEGRGLGKL 212 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + I+S P+ SLN S A ++++E M + KN K Sbjct: 213 VRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQRLNLKAKNSK 258 >gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1] Length = 252 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 12/175 (6%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L P +L+ Q +N+G + R + + + R + ++S+ A Sbjct: 88 ALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVVGVHGVVIPGRRAAEVTPAVVNTSSGA 147 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + V V +NL I + V + +R+ + ++ Sbjct: 148 VEHL-RVAVVTNLAATIEQIQHA---------GVWVVGVEDDERAYEYDRVDLDLPLALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 G E GL + ++ P+ SLN++ A ++++ KN Sbjct: 198 LGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHAWRVREQGRTKN 252 >gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 244 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 25/154 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R ++ + + P+ G S A +SA A + +V NL +A+ Sbjct: 109 NFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 165 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + AT +L ++ + I+ G E G++ + + Sbjct: 166 QGSGIRVVAAT-----EKTSQLLYAEDFTV----------PTAIVMGAEDVGVSPAVLKV 210 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ P+ SLN+S A + ++E ++ + Sbjct: 211 VDSKAKLPMVGDISSLNVSVACAVFLYEALKQRL 244 >gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68] gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68] gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA] gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 292 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 21/171 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P AP A I L + Q N+G + R + F + L++P P + K SS Sbjct: 89 PGAPVAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFR-CLLSPGSVDPYNPKVVRSS 147 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A +F A L A + R R + L + + Sbjct: 148 MGA--------IFH------APLELDVALDSLRTRFARIACLDMQGEPVQSTAFTT---F 190 Query: 121 VGIIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E G+ +++ AL + P SLN++ V + +E Sbjct: 191 ECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241 >gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 357 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ + ID+ L + Sbjct: 219 PHNLGAIMRSCAHFGVQGVVLQDTAMLESGAAVRTAEGGAEHIKGIDADGFTDTLNKFRN 278 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + I T++ + + + ++ G+E GL++ + Sbjct: 279 EGYTIVTTSS-------------HKGSTALAQATLPEKMVLVLGQESDGLSDSIWEDGDI 325 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ E Sbjct: 326 RLSIGGTGRVESLNVSVATGILLAEWWRQ 354 >gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 269 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 9/151 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75 + V+P+ N G + R + L+ + K SSA + + R S Sbjct: 117 VGVEPREPGNAGTLIRCADAMGADAVVLLGDAVDPHNGKCVRSSAGSIFHLPIVRERSVS 176 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + AIA TA + ++ ++ +FG E GL + Sbjct: 177 DALSAIAAAGVCVLATAADGELILDDISDDADGLLTR-------PTAWLFGNEAHGLPVD 229 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A+++ ++ P+ SLN++ + ++ Sbjct: 230 VQAMADHRVAVPIRGRAESLNVAATAAICLY 260 >gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 275 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 16/166 (9%) Query: 6 PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P + S +G +IL Q N G + R + + + S K +S + Sbjct: 113 PSVTGSPEGNLALILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + R F +L + L I T+ + +L P A S + Sbjct: 173 VFHVPTPR-FQDLAAVVKALRAEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V + G E GL E + + ++S P+ SLN++ A L +W Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267 >gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6] Length = 251 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 21/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ L ++ P+D + R + A VI V V + Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ +I T EA + + ++ +G + +I G E G+ Sbjct: 158 LARTLEKLQQRGLWIVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN+S A + ++E + Sbjct: 204 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQRGAKA 247 >gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748] Length = 264 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 21/163 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I L Q N+G + R + + L+ ++K S+ +A + + V Sbjct: 115 GVYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPV 171 Query: 74 FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + L + IA+ + TA + +++ + +I G E Sbjct: 172 YEDVTLSMLNDLIAESNMSTYVTALEESKPYNMVT-------------YDKRCMLILGNE 218 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+T E + L I P+ SLN+S A L +++ E Sbjct: 219 GNGVTPEVMNLCKHRIMIPMYGDIESLNVSVAAALCMYKAQEQ 261 >gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 262 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 12/142 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G V R + LV S + ++ + + + ++++E + Sbjct: 129 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ASVQEFL--- 183 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A SV+ A V ++ + I+ G E+ GL E A + + Sbjct: 184 -------AWRETWPGSVIGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 236 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 P+ SLN+S A +M++ Sbjct: 237 KIPMRGRADSLNLSVATGIMIY 258 >gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297] gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297] Length = 224 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 6 PQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 Q+ N + + IL D +N+ + R + + + +V P G ++ A Sbjct: 10 QQVLNQRQNDMTILTDKVHKSQNVSAIMRTADSVGIPTVHMVKPERGRL--VYHHTAGGA 67 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +D V V+ L E I + RN + AI E ++ + +I Sbjct: 68 SRFVD-VIVYETLSEGIQ--------SLRNAGMALYAAHWSDRAISYREADYT-RPFALI 117 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E++G++ E ++ + P+ SLN+S A +++ E M + Sbjct: 118 LGAEKYGISPEAADAADEHLIIPMVGACESLNVSVASGIILQEAMHQRMAQQA 170 >gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1] gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp. PRwf-1] Length = 261 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 30/170 (17%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI------D 69 +L N+G R + ++ P+ + S A ++ + Sbjct: 110 VLDQITDAHNLGACLRTAAAMGVD--AVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTN 167 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R NLK+A F+Y T A L + G V II G E Sbjct: 168 LARCIENLKQA---GVFVYGTAL------------DATAKALPDVDLKG-KVAIIMGSEG 211 Query: 130 WGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175 G+ + ++ P+ + SLN+S A ++++E Sbjct: 212 EGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 261 >gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii F0254] Length = 233 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 17/173 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 + + +L K V++L Q N G + R+ F + + + + +E SS Sbjct: 75 SAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSS 134 Query: 62 ANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A +D V+V + + + +Y A +N + P Sbjct: 135 TGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYP-------------- 180 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ G E G+ + + I+ + SLN+S A +++ E ++ Sbjct: 181 EKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIILAEMSKS 233 >gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 170 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 37/171 (21%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P + N G +AR L L+ P +K + D V++ Sbjct: 5 IVLFEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSIDDKHLKRA--GLDYWDKVQINY 60 Query: 74 FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 NL E + + F+ + A P Q+ ++FG+E Sbjct: 61 HQNLPEFLKSVKNPQNLFLVSKFANQDYTDPDYSDP-------------SQDYYLLFGKE 107 Query: 129 RWGLT------NEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172 GL N E I P + +LN+S ++++E + Sbjct: 108 TTGLPEPFMRQNPE-----KAIRIPQDDDNIRALNLSNTCAIVIYEVLRQQ 153 >gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens] Length = 147 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + GEN+G V R L P+ ++ NA +D R S Sbjct: 3 TVILDGLRSGENVGNVIRTCETAGARVLC-CGTTPAPPTPAVLKAACNAAPFVDVRREPS 61 Query: 76 NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L A+ R + + A + ++FG E G+ Sbjct: 62 TLDAVRALQGRGVAVYALETTRGSV-PLYDADLPAPL-----------ALVFGNELVGVH 109 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + ++S P + SLN++ V+E + Sbjct: 110 PDVLAACDGVVSLPTFGVKNSLNVASCAAAAVYEVVRR 147 >gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ L ++ + E F + ++ G E GL Sbjct: 238 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 284 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +AI P++ SLN S A + ++ ++ + Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330 >gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2] Length = 264 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 16/162 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70 V++L + N+G + R+ + L + K S+ + + Sbjct: 114 NSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIE 173 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L EA + + T+ A ++ G E Sbjct: 174 ADLAELLPEAQSKGIKLVGTS--------------LQATHTCYTYDWTAGTWLLMGNESE 219 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL++ + + P+ SLN++ A ++++E + Sbjct: 220 GLSDAVRLAVDESVIIPMQGEAESLNVAMAATVLLYEAVRQR 261 >gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 271 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 7/153 (4%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + N G V RA + L + K S+A + + V L Sbjct: 115 VLAHVRDPGNAGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLP-VVPGPEL 173 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L + A ++ +L AA + + +FG E WGL Sbjct: 174 PDAVGALRSAGLTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLS--RPTAWVFGNEAWGLR 231 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +E++AL++A + P+ SLN++ A + ++ Sbjct: 232 DEDLALADATVRVPLRGRAESLNLATAATVCLY 264 >gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM 16795] Length = 265 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 12/155 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL Q N+G + R + + + L+ + K S+ + + D + + Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGS--IFDMNIIQT 177 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 EA+ F+ A NNF V + NE + G + ++ G E G+ +E Sbjct: 178 TQDEAV---DFLKA------NNFDIVSSYLHTESYYNETTYDG-KIALVIGNEANGINDE 227 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ S+ ++ P+ SLN + + ++++E + Sbjct: 228 LISKSDKLVKIPIYGNAESLNAAISAAILMYEIKK 262 >gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei ATCC 43380] Length = 371 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 233 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 290 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 291 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 340 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S SLN+S A +++ E + Sbjct: 341 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 371 >gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum] Length = 237 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 30/170 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85 N G + R+ F ++ + L PS S A ++S+R + L + + D+ Sbjct: 54 NFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGA---MESIRFYR-LTDTVMDMKS 109 Query: 86 ------FIYATTARNRNNFKSVLAP-------KEAAIVLNERIFSGQNVGIIFGRERWGL 132 I T N+ V P + A N S + + + G E GL Sbjct: 110 LSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLALGSESRGL 169 Query: 133 TNEEIALSNAIISFPV---NPLF---------PSLNISQAVLLMVWECME 170 + + + ++ P + F SLN++ A +++++ Sbjct: 170 SENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILLYQLTM 219 >gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby] gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 249 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62 L +K PV+IL+ N+G R+ + +V P+D + + Sbjct: 88 TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSANITPVVSKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A I VRV +NL A+ +I+ A L + Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N+ ++ G E GL + + S P+ SLN+S A + ++E + E Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249 >gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 243 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 15/140 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R ++ +V R W A + D + V ++E + Sbjct: 107 NIGSIVRTANAMGARRVHVVG-RKRWNRRGAMVT----DRYLP-VDHRPEVRELVEHCS- 159 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + E V E + ++FG E GL+ E I + +++ Sbjct: 160 -------KEGLTLVGVDNVE-GSVALEGAVLPERACLVFGSEASGLSEEMIRACDIVVAI 211 Query: 147 PVNPLFPSLNISQAVLLMVW 166 S+N+ A +++W Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231 >gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 15/162 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70 V+IL D Q N G + R ++ + L + K S+ + + Sbjct: 108 NPLVMILEDLQDPGNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLY 167 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L + + D + R + ++ + G E Sbjct: 168 VESVVSLAQELKDRNI--------RTFAAHL-----HGKNSYDQESYTGGTAFLIGNEGK 214 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GLT+E ++ +I P+ SLN + A ++++E Sbjct: 215 GLTDEAADSADCLIRIPMCGKVESLNAAMASGILMYEAARQR 256 >gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup] Length = 269 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 19/166 (11%) Query: 6 PQLQNSA-----KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARS 59 P LQ+ K +++L +N+G + R F + +V+ K+ Sbjct: 109 PSLQSFLQHLPEKALILVLCGISNHDNMGSIFRNAAAFA-SNGIIVDKTSCDPLYRKSIR 167 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 SA A + A D++ I A +++N L+P +A ++ + Sbjct: 168 VSAGA------ALKVPYTQNA--DINDIIA-ALKDKNFHLYALSP--SASHTLKQANKTK 216 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + +IFG E GL + S + P+ F SLN++ A + + Sbjct: 217 RMALIFGTEGDGLPTHILQQS-KTLRIPMTNGFDSLNVATASGIAL 261 >gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8] Length = 292 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 333 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 182 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 240 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ L ++ + E F + ++ G E GL Sbjct: 241 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 287 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +AI P++ SLN S A + ++ ++ + Sbjct: 288 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 333 >gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A] gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68] gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A] gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp. longum F8] gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum subsp. longum JDM301] gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68] gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ L ++ + E F + ++ G E GL Sbjct: 238 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 284 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +AI P++ SLN S A + ++ ++ + Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330 >gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium opportunistum WSM2075] Length = 282 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 13/169 (7%) Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P+ ++ ++LV N+G + R+ F L S S Sbjct: 119 PLKPKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKS 178 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ A ID + V NL +A+ LH F+++ + L E F+G Sbjct: 179 ASGALEHIDQIEV-KNLADALGQLH---------EAGFQTIGLDSDGPAEL-ETSFAGDR 227 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 V ++ G E GL + + + SLN+S A + ++ Sbjct: 228 VALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276 >gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1] Length = 258 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 11/160 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V+IL N G +AR+ + + + + + A +SA A + VR Sbjct: 108 SPLVLILDRITDVRNFGAIARSAECAGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVR 167 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + ++ T + +++A E + V +I G E G+ Sbjct: 168 VKN-----------LFYTCRDLQKMGLTLVAITEKSDKDMYEADFASPVAMIMGSEEDGI 216 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +NE + +++ ++ P+ SLN+S + + ++E M Sbjct: 217 SNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYEAMRQR 256 >gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium] Length = 239 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R + Q+ + ++ S A ++ +N ++ + ++ AI+ Sbjct: 30 PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSN---HWVKIKTHATIENAISTC 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + A + +I Q II G+ER ++ + +AL++ I Sbjct: 87 KAV---------GMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALALADHNI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 P+ + SLN+S A L+++E +S + P + + + Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLP-EEEQQEWLFE 189 >gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 289 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 33/181 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 ++ K I L + N+G + R + L+ S + ++ + Sbjct: 124 IKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGSIFS 183 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ F I T + +++++ F Sbjct: 184 VPLYRLDESAFLNWSAHFK---------GMIVGTHLKGSLDYRTLD-------------F 221 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E+ GL++ + + P + SLN++ A +M++E ++ Sbjct: 222 KNGPIILLMGNEKQGLSDLLTNRCDKLARIPQSGRADSLNLAVATAVMLYEIRRPYLILE 281 Query: 177 E 177 Sbjct: 282 P 282 >gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum Pei191] gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum Pei191] Length = 148 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 23/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L++P++ N G + R+ T+L LV + G+ E + D ++ + + Sbjct: 3 IVLINPEIPFNTGNIGRSCVATG-TKLHLVG-KLGFKIEDKEIRRSGLDYWVNLDYKTYK 60 Query: 76 NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ + ++ + + + +F + P + +IFG E G Sbjct: 61 DFDGFLSSVENKESMFFFSTKGKKSFWDIKYP--------------PDSYLIFGSESCGF 106 Query: 133 TNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E E + + P+ SLN+S + ++++E + Sbjct: 107 PKEIYETYK-EKLFTIPMTGPVRSLNLSTSAGVVLFEALRQQ 147 >gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 255 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D + + + + + +I G E G+++ Sbjct: 171 DLADVITDFQDVA---------IPVYASMLDKKAKQLQDFAKVPQLALIIGNEAHGVSST 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L + + P+ SLN + A +M++ Sbjct: 222 IASLCDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42] gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42] Length = 248 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64 + + +++L N+G R ++ P+D A + ++ A Sbjct: 93 EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGA 150 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + L E ++ T+ A ++ V Sbjct: 151 AETVPYFMVTNLARTLNELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247 >gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256] Length = 152 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 19/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N+G + R F + ++ P G+P A A D Sbjct: 3 IALFQPDIAGNVGTILRTASCFGVPA-HIIEP-CGFPFGDAALRRAGMDY---------- 50 Query: 77 LKEAIADLHFIY---ATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A AD+ + + + VL A L + F+ ++ ++FG E G+ Sbjct: 51 --AARADVRRHADWDGFSGWSHSTAGRLVLLTTAGATRLPDFAFAHGDI-LLFGSESAGV 107 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + ++ P+ P F LN++ A + + E + + Sbjct: 108 PPHVHAAAAERVAIPMQPGFRCLNVAVAAGIALAEALRQT 147 >gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-3C] Length = 177 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG V R F +T++ L P + ++ A + + L E + +L Sbjct: 37 NIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALGATETVAWEYRENTL-ELVKELQ- 94 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTNEEIALSNAIIS 145 ++ + + A L++ + +IFG E G+ + S+ ++ Sbjct: 95 -------AQSIAVWSVEQAQGATFLDKMSLQPETTYALIFGNEVKGVQQAVVNESDGVVE 147 Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170 P SLNIS + ++VW+ + Sbjct: 148 IPQFGTKHSLNISVSAGVVVWDFWK 172 >gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC 27678] gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1] Length = 329 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 10/150 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 178 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 236 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI + + R + L A ++ E F + ++ G E GL+ Sbjct: 237 LTKAIE--------SLKERGYYSIGLDGGGDA-LVGETGFETDPLVVVLGSEGNGLSRLV 287 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + I P++ + SLN S A + ++ Sbjct: 288 RSTCDVIAGIPMSSMVESLNASVAAGITLY 317 >gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054] Length = 330 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 18/161 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ L N+G V R+ F + + R + A +S+ A + R + Sbjct: 181 IVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAGAWKTSSGAAARLPVAR-AT 239 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL A+ + A + + + V I+ G E G Sbjct: 240 NLTRALESYQKAGVMVVGLAA-------------DGEAEIGDLDALNGPVVIVAGSEGKG 286 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L+ + ++ P+ SLN A ++++E Sbjct: 287 LSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLR 327 >gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium TW-7] Length = 228 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 20/156 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82 N+ + R+ + V WP + + S + ++ + N+ +A Sbjct: 31 HNLSAIVRSADAVGCHHVHAV-----WPENQKWLTNNTSGGSKNWLE-THLHKNIDDA-- 82 Query: 83 DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 AT R N +LA E A+ E I + II G+E+ G++ + + + Sbjct: 83 ------ATMMRQHNPNVQILATHLSEDAVDFRE-IDYTKPTAIIVGQEKTGISAQALKHA 135 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I P+ + SLN+S A L+++E + Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQHQREKAG 171 >gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506] gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506] Length = 150 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 17/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADCVIDSVR 72 I L P + N G V R LR+ + P S+++ + + Sbjct: 3 ISIALYQPDIAGNTGAVMRTAA---CLDLRIEIIEPTGFELSDRSLKRA--GMDYLSLAN 57 Query: 73 VFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L EA R R + +L +A V+ + F ++ ++FGRE G Sbjct: 58 LTKHLDFEAFE--------AWRKRAGRRLILLTTKADTVVWDFEFRDDDI-VMFGRETAG 108 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E A ++A ++ P+ S+N+S +V L+ E + Sbjct: 109 VPVEVHAAADARLTIPMQTGARSMNLSASVALVCGEAVRQ 148 >gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 218 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ +F + +L ++ + ++ + A +D R ++ I Sbjct: 43 HNTSAVIRSCESFGVQELHVIEEVNAKRIDREIAM--GAQKWVDVAR-HNSASSCIK--- 96 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R + +P + A L E + + I FGRE GL+ + ++ I Sbjct: 97 -----SLREQGYKIVATSPHKDAHRLEEFDVT-EKAAIFFGRETEGLSELVMEEADDFIY 150 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS + + + Sbjct: 151 IPMVGFTESLNISVSAAITL 170 >gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 19/155 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL- 84 N G + R F+ + + R + +SA A + +V SN+ AI +L Sbjct: 109 HNFGAIIRTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKV-SNINNAINNLK 167 Query: 85 ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I ++ + +F +V Q + I+ G E G++ + Sbjct: 168 KQGVWIVGSSVDAKEDFSNVDY--------------DQPIAIVIGSEGEGISELVKKNCD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ P+ SLN S A + ++E + I + Sbjct: 214 YLVKIPMMGNMNSLNASVAASIFMYEVVRQRIGKA 248 >gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 28/177 (15%) Query: 19 LVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 LV+ Q N+G + R F + QL L K ++ ++ R+ S Sbjct: 63 LVESVTQ-PYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHTRMAS- 120 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------NVGIIFGRERW 130 + + A+ L +V + G E Sbjct: 121 ---------------TADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDH 165 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 G + +A ++A+ P SLN++ A + + E E + PA Sbjct: 166 GCSPALLAGADAVTYVPQIGRVGSLNVAVATAIALSEARRREWAGLG---GEADAPA 219 >gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12] Length = 250 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 23/177 (12%) Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKAR 58 + L S+K P +IL+ N+G R + +V P+D S Sbjct: 84 SHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGVD--FVVIPKDKSASITPVVS 141 Query: 59 SSSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + A + VRV ++ +IY A ++ Sbjct: 142 KVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAG--------------EAEHSLYQV 187 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + + S P++ SLN+S A + ++E + Sbjct: 188 DCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQR 244 >gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 249 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 16/172 (9%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 PQL K P ++IL N G + R + + + + A +SA A Sbjct: 86 PQLFEQGKTPFLLILDRLTDVRNFGAICRTAECVGIDAVIIPEKGAAPINSDAIKTSAGA 145 Query: 65 DCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I ++++ +NL + L + SV A E A L + + Sbjct: 146 ---IYNIKICKENNLAHTVDFLQ----------QSGISVYAASEKAQKLIYDVNMTEPCA 192 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 I+ G E G++ E + ++ I P+ SLN+S A +++E + + Sbjct: 193 IVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAVRQKMA 244 >gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens] Length = 222 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 10/173 (5%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R+ + +++ +K R S ++ +D ++ N + IA Sbjct: 60 GNISAVFRSADALGFQSVHVISTETKKRYKKNRKVSRGSETWLD-AEMWENSSDCIA--- 115 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T R R +V + + + +IFG E G + E + S+ Sbjct: 116 -----TLRKRGYRIAVTHIAPNTVSIQDM-DWTIPTAVIFGNEYKGASEEAVKQSDIRCC 169 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 P+ + S N+S A +++ + I+ S + E ++ + Sbjct: 170 IPMGGMVESFNVSVAAGIIMHHAAHDRIIRSGTHGDIPPQHRKILEAEFYMRH 222 >gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena DSM 20109] Length = 333 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 22/167 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71 V+ L N+G V R+ F LV P R + A SA A V Sbjct: 183 PLVVALDGITDPRNLGAVLRSAGAFGAHG-VLV-PERRAAGVTASAWKVSAGAAAR-VPV 239 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +NL A+ D F+ A + L + F+ + ++ G Sbjct: 240 ARATNLTRALQDYRRAGVFVVGLDAGGD-------------VPLADLPFAADPLVLVVGS 286 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E GL+ +AI+S P+ SLN A + ++E + Sbjct: 287 EGKGLSRLVREQCDAIVSIPIASAVESLNAGVAAGIALYEVARQRAL 333 >gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX] Length = 324 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 11/172 (6%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A + ++ L N+G +AR+ F L + R + A +SA Sbjct: 164 AEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGVTTAAWKASAGT 223 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I +V NL + + + + L E A + ++ Sbjct: 224 LARIPVAQVV-NLTRTLKQFQEAGFFVSGLDADGDTPLDQWELAT---------EPSVVV 273 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL+ + ++S P++ SLN S A + ++E + + Sbjct: 274 VGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRRTAAK 324 >gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 99 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 158 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 159 VTNLSQTLDKLKEASFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 203 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +IS P+N SLN S A ++++E N + Sbjct: 204 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 247 >gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Mocydia crocea] Length = 239 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q II G+ER G++ + +AL++ I P+ + SLN+S A L+++E Sbjct: 112 QPTCIILGQERAGISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165 >gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium gallicum DSM 20093] Length = 348 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 10/156 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+ I L +N+G V R+ F + L R + A SA A + Sbjct: 185 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPI 244 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 RV NL +AI L + R + L + + + F + ++ G E Sbjct: 245 ARVV-NLTKAIEGL--------KERGYYAVGLD-GSGSKEVGQTGFETDPLIVVLGSEGK 294 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL+ + I P+ + SLN S A + ++ Sbjct: 295 GLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330 >gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759] Length = 264 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 18/160 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 IL + + N+G + R + + R + +SA A +V + Sbjct: 118 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 177 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E + + +A + L + ++G++ G E G++ Sbjct: 178 SKTIEE-LKERGMWFACA--------------DMDGELMYKCNLTGSLGLVIGNEGNGVS 222 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++S P+ SLN S A ++ +E + + Sbjct: 223 RLVKEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRM 262 >gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri] gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri] Length = 262 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F T + L N ++K +S A + +NL E I Sbjct: 118 QDPGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGA--IFKVAIKEANLIE-IK 174 Query: 83 DLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + TT R + + + + + G E GL+ + Sbjct: 175 NFQLNRYKIITTGLKRQSV--------FLQDCHCQFKQNERYILALGNEGHGLSTTLQEI 226 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ + +N SLN++QA ++++E Sbjct: 227 SDYNVQIKINSQLESLNVAQAGTILMYEINRQ 258 >gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601] Length = 220 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 23/166 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + G +IL Q N+G + R F +T + L + ++ A Sbjct: 63 EEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGAL 122 Query: 66 CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++F + L+ + ++I +T+ R ++ Sbjct: 123 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTEDWSKLPDLN 165 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+ G E G+ + S+ ++ P++ SLN++ A +++ Sbjct: 166 ELVILMGNEGEGIKRILMEKSDFVLRIPMHGNLSSLNVTVATGIVL 211 >gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 270 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R+ + L P+ A+ L E V ++ G E GLT + IA ++ + P+ Sbjct: 192 RDGGFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGV 251 Query: 153 PSLNISQAVLLMVW 166 SLN++ A + Sbjct: 252 DSLNVATAGAIAFH 265 >gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1] gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens TC1] Length = 155 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 21/168 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74 I+ P++ N G R +L LV P G+ A+ A D + V V Sbjct: 3 RILFHTPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60 Query: 75 SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ A A L ++A T+ I + ++FG E GL Sbjct: 61 KDIEAAWAALKPERVFAYTS--------------DGETSYTDISYREGDVLMFGPESVGL 106 Query: 133 TNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + + P+ P SLN++ A + V+E + + K Sbjct: 107 PDWLKQDPHVTARVRLPMKPSLRSLNLANAASIAVFEAWRQNGFAGAK 154 >gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 268 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 16/161 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ V++L +NIG + R F + L KA S A + + Sbjct: 118 PARAVVLVLCGIANHDNIGGIYRNAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPT 177 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 R+ ++ + +A+ F LA +A + R+ ++ G E Sbjct: 178 ARLGRGEDIADLLANTGF-------------EALALSPSASEVLARLKPAPRTAVLLGAE 224 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ + +A + + P+ F SLN++ +++ Sbjct: 225 GPGLSPDVMARA-RTVGVPMAKGFDSLNVATTSGIVLHHLR 264 >gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus] Length = 254 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 23/172 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANA 64 + +N+ +++L N+G R+ + + +V PRD + A R ++ + Sbjct: 90 KTKNNIIPLLLVLDGITDPHNLGACIRSADAAGVH-MIIV-PRDRSANVNATVRKVASGS 147 Query: 65 DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + VRV + LK + + +I + R+ I+ N R+ Sbjct: 148 SDRVPFVRVTNLSRTLK-LLKKYNIYIVGSVLRS------------NQILFNTRLID--P 192 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + ++ P SLN+S A + ++E + Sbjct: 193 IALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLFETVRQR 244 >gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 22/173 (12%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L S P ++IL N+G R+ + + + R + A+ + A Sbjct: 96 PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 155 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +RV + A T R N V EA L + +G + Sbjct: 156 AESVPLIRVTN------------LARTXRXLQEENIWIVGTAGEADHTLYQSKXTG-RLA 202 Query: 123 IIFGRERWG---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G LT E + +IS P SLN+S A + ++E + Sbjct: 203 LVXGAEGEGXRRLTRE---HCDELISIPXAGSVSSLNVSVATGICLFEAVRQR 252 >gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ] Length = 247 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 +L + +GP ++LV N+G R Q +V P+D + R + Sbjct: 88 ELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A V+ V V +NL + L R R +V E L G V Sbjct: 146 GAAEVVPLVAV-TNLARTLEKL--------RQRGL-WTVGTAGEVEQELYGVDLRGPTV- 194 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +I G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis ATCC 33386] Length = 234 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 17/174 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + + ++ + V++L Q N G + R+ F + + + + +E S Sbjct: 74 LNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRNSVSVTETVVKS 133 Query: 61 SANA---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A +I V ++ + +FIY A + + P Sbjct: 134 STGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFP------------- 180 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ G E G+ + + I++ P++ SLN+S A +++ E +N Sbjct: 181 -EKLCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILLAEISKN 233 >gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1] Length = 260 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K + Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAG 160 Query: 62 ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A V+ + ++ +A+A AR V Q Sbjct: 161 MGAHFVLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSQP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ ++ ++ P SLN++ A + ++E + Sbjct: 206 VAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC 17982] Length = 243 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R ++ +V R W A + D + V ++E + Sbjct: 107 NIGSIVRTANAMGARRVHVVG-RKRWNRRGAMVT----DRYLP-VDHRPEVRELVEHCS- 159 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + E V E + ++FG E GL+ E I +++++ Sbjct: 160 -------KEGLTLVGVDNVE-GSVALEGAVLPERACLVFGSEASGLSEEMIRACDSVVAI 211 Query: 147 PVNPLFPSLNISQAVLLMVW 166 S+N+ A +++W Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231 >gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 267 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ L+ PR P ++ + A + R+ + A+ +L Sbjct: 132 NIGAIFRSGAALGF-DAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRL-PDWYGALPELS 189 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 TT L A+ + + V ++ G E GL+ ++ Sbjct: 190 AAGFTTV--------ALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAI 241 Query: 146 FPVNPLFPSLNISQAVLLMVW 166 P+ SLN++ A + + Sbjct: 242 IPMREGIDSLNVAAATAVACY 262 >gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242] Length = 158 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 14/168 (8%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + L P + +N G + R ++ P +++ + +D V Sbjct: 1 MTPLTLALYQPDIPQNAGAMLRTCACLG-ADAAIIGPAGFPVADRDFRRA--GMDYLDQV 57 Query: 72 RVFSNLKEAIADLHFIYATTARNR----NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + F R R + + ++ A ++ GR Sbjct: 58 TIA-------RHVSFAAFMDWRARLAEAGDRRRLVLLSTRASKSYADCAYQPGDVLLVGR 110 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G+ ++ A ++ + P+ P SLN++ + +++ E + Sbjct: 111 ESAGVPDDVFAAADITVRIPMRPGARSLNVAVSAAIVLSEALRQLGAD 158 >gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 224-1] Length = 275 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R + + + R + +S A + RV K Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKL 169 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + K + ++ G E G++ + Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLKQ 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN S A ++++ Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814] Length = 152 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73 I P + +N+G R F+ T++ ++ P + KA SA ++ Sbjct: 3 IAFYQPDIPQNLGSNFRIAACFS-TKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDS 61 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +++ K + +R + VL + A L E F + ++FGRE G+ Sbjct: 62 WTSFKN------------SPDRKKGRLVLFTTKGATPLLETKFESGDT-LLFGRESAGVP 108 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E + P+NP SLN+S + + + E + + Sbjct: 109 DEVHDSAQIRCVIPLNPEARSLNVSVSAAIALHEALRQT 147 >gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri 202-4] gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri MV-22] Length = 251 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R + + + R + +S A + RV K Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKL 169 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + K + ++ G E G++ + Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLKQ 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN S A ++++ Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4] gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4] Length = 266 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 15/159 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRV 73 V++LVD N G V R + L + K+ ++A + + R Sbjct: 119 VVVLVDVAEPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKSVRAAAGSTFHVPLARARN 178 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A+ R LA A E + G V IFG E GL Sbjct: 179 IPAVLTAL-------------RAAGLRTLAAHGYASASLETVRFGDPVAWIFGNEAHGLP 225 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ + + P+ SLN++ A + V+ + Sbjct: 226 EDVLSSVDEAVRIPLYGKAESLNLATAAAVCVYTAAMAA 264 >gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK115] Length = 242 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 235 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 11/159 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+IL + Q N G + R+ F + + + +E +S A +D V+ Sbjct: 87 KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVK 146 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +N+ EA+ + + V + + ++ G E G+ Sbjct: 147 V-TNISEAL----------LKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGI 195 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I P++ SLN+S A +++ E +++ Sbjct: 196 RKKVKENCDVLIKIPMHGKINSLNVSVAGGIILSEIVKS 234 >gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279] Length = 266 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 23/181 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P Q S+ +++ V + N+G + R+ LV S + +S Sbjct: 104 PSLAAFQPSSNALLLVSVGLEKPGNLGALLRSADAAG-ADAVLVAGGVDLYSPQVIRNST 162 Query: 63 NADCVIDSVRVFSNLKEAIADLHF-----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 V+ S+ F+ ++A+ D I ATT + V Sbjct: 163 G---VVFSLPTFAAPEQAVLDWLLQHNIPIVATTPHTHQTYWDVDLR------------- 206 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 V I+ G E GL+ + + + P+ SLN+S LM++E + Sbjct: 207 -GPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLNVSVTAALMLYEAVRQRQPRPL 265 Query: 178 K 178 Sbjct: 266 P 266 >gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9917] Length = 229 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 29/187 (15%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72 +LV+ + N+ + R+ + + V+ PR S++ + + +R Sbjct: 24 VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSLSGRPRTF------NSTAQGSQRWVP-LR 76 Query: 73 VFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 ++ A+ L +Y T N ++ + G E Sbjct: 77 DHPDITAAVHHLKAQGFKLYGT-----NLGVDARDYRDCDFT--------GPCAFVLGAE 123 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 +WGL++ AL + + P+ + SLN+S A +++E + + + + P Sbjct: 124 KWGLSDAATALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGRVPHQGEGIPPD 183 Query: 189 KGELLSF 195 + L F Sbjct: 184 HYDSLLF 190 >gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926] Length = 251 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 11/170 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P S ++IL Q N+G + R + L+ +EK S Sbjct: 90 IYPMKESSIASIGDNIVILDRIQDPGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRS 149 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + + + ++ E I + N+KS V I G Sbjct: 150 SMGS--LFNMNFIYMEEDELIKFM---------AEKNYKSTATALREDAVSYTDIIPGSK 198 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 IIFG E G++ I +S++ + P+ SLN++ A +++++ E Sbjct: 199 NAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESLNVAVATGIVLYKFRE 248 >gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 297 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 33/184 (17%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 L+ I L + N+G + R + L+ S + ++ + Sbjct: 136 SLKPKGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195 Query: 65 ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ + FS L + T + +++++ Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------P 233 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + V ++ G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293 Query: 176 SEKN 179 E+ Sbjct: 294 DERG 297 >gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 272 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 12/153 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R+ + + + R + A +S A + + + +A+ Sbjct: 132 EKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIRASLGALFTLP--VIGMTVPQAL- 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A R + +LA + + II G E GL+ E + Sbjct: 189 ---------AWLRMHQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIR 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 IS P+ SLN+S ++ +E + Sbjct: 240 AISLPMLGTVDSLNLSVTAAILFYEALRQRRAK 272 >gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus VCS1703A] Length = 242 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 31/168 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G R + + L N + R + A Sbjct: 94 ILVLDSIQDPHNLGACLRTAMAAGVDAVVLPNSCAADITPVVRKIACGA----------- 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----------VGIIF 125 EA+A R N + V KE + + + + +I Sbjct: 143 --AEALAIF--------RVANLKREVEMMKEKGLWVVGGAGEAEKSLFDLDLSGGLVMIV 192 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+ + + + P+ SLN+S A +M++E + Sbjct: 193 GNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQRL 240 >gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 257 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + A ++IL N+G + R N+ + + R + +S A I Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVGIIFG 126 RV +NL + + L AR F + + P + + + ++ G Sbjct: 165 PIARV-TNLSQILDKLK------ARGFWIFGTDMNGTPSDCW-------NTNGKLALVIG 210 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + +I+ P+N SLN S A ++++E N Sbjct: 211 NEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256 >gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b] Length = 249 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62 L +K PV+IL+ N+G R+ + +V P+D S + Sbjct: 88 TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSASITPVVSKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A I VRV +NL A+ +I+ A L + Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N+ ++ G E GL + + S P+ SLN+S A + ++E + E Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249 >gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105] Length = 244 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 17/162 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R+ + + L + + + A I + V + Sbjct: 97 VLDGVTDPHNLGACLRSADAAGVHAVVLPKDKSVGITPVVSKVACGAAETIPVITVTNLA 156 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E + T A + + G E G+ Sbjct: 157 RTLEEIQDAGVWCIGTAG--------------EATDTLYDADLNGPIAWVLGAEGDGMRR 202 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN+S A + ++E + S Sbjct: 203 LTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQFSK 244 >gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367] gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367] Length = 170 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 23/164 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73 I L +P N G +AR L L+ P + + D VR Sbjct: 5 IALFEPLFPANTGNIARTCA--GTDTILDLIKPLGFSVDDAHLKRA--GLDYWDKVDVRY 60 Query: 74 FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL + I+DL +Y + + + P + +FG+E Sbjct: 61 HENLPAFLDTISDLSQLYLVS---KFADQDYTEPDYQVNE--------HDHYFLFGKETT 109 Query: 131 GLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172 GL + + I P + +LN+S + ++++E + Sbjct: 110 GLPEPFMRQHAEKCIRIPQDDTHIRALNLSNSAAIVIYEVLRQQ 153 >gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] [Yersinia enterocolitica subsp. palearctica Y11] gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 368 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 12/147 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 231 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 288 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 289 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 338 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171 S SLN+S A +++ E Sbjct: 339 SIGGTGKVESLNVSVATGILLSEWWRQ 365 >gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium SCB49] gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium SCB49] Length = 151 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 27/163 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74 I+LV P++ N G + R L L+ P S+ + + ++ Sbjct: 5 IVLVCPEIPNNTGNIGRLSLATG-AHLHLIKPFGFEISDSRLKRA--GLDYWKHIELTIY 61 Query: 75 SNLKEAIA---DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130 +++E D + + ++ + KSV P E ++ ++FG+E Sbjct: 62 ESIEEFYKINKDKNIVLLSS----HGDKSVWDIPFED------------DIMLLFGKESS 105 Query: 131 GLTNEEIA-LSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171 GL E + + + P++ S+NI+ AV + V+E + Sbjct: 106 GLPAEILKKHPDNLYKIPLHSDHIRSINIANAVSVTVYEGLRQ 148 >gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f. nagariensis] Length = 312 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 11/156 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R + +N R + ++ ++A AD +D V+++ + E +A Sbjct: 103 GNLAAVCRTADALGYGAVHCIN-RGDVKYKVSQRTAAGADKWLD-VKMWDSTAECLA--- 157 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R+ ++AI + E + + I G E++G++ E +A ++A Sbjct: 158 -----AVRSAGYQIITTHLSQSAITI-EEVDWTRPTAFILGNEKFGVSEEAVAAADACAI 211 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 P+ + S NIS A L+++E + + + Sbjct: 212 IPMTGMVESFNISVASALIMYEARQQRLRRMGTHAD 247 >gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8] gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8] Length = 262 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 17/160 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR 72 G V++L Q N+G + R F Q + P G K + A + + R Sbjct: 114 GTVLVLDGIQDPGNVGTLLRTAAWFG-AQAVVAGPGTAGLYGPKVMRAGAGSHWALPLAR 172 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A R R + ++ + + ++ G E GL Sbjct: 173 T-----DAPGPFL------DRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGL 220 Query: 133 TNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM 169 + + + +S P P P SLN++ A ++++E + Sbjct: 221 SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEWL 260 >gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 362 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 22/171 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 AK V+ L + N+G + R+ +F + + L +P R++ A+ + Sbjct: 209 SAPAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPALLESGAAVRTAEGGAEHIK 268 Query: 69 -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 D + V ++A + TT+ ++ + + + Sbjct: 269 AINADDFLSVLDTFRKA----GYTIVTTSSHKGTT-------------LAQAKLPAKMVL 311 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + G+ER GL++ + IS SLN+S A +++ + + Sbjct: 312 VLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLADWWRQNQA 362 >gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY] gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus TPSY] Length = 248 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64 + + +++L N+G R ++ P+D A + ++ A Sbjct: 93 EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGA 150 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V + L E ++ T+ A ++ V Sbjct: 151 AETVPYFMVTNLARTLNELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SLN+S A + ++E + Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247 >gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24] Length = 298 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 29/181 (16%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + ++ + +L + N G V RA + L + KA S+A Sbjct: 120 ALEAVLDAGPRLIAVLCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAG 179 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------ 117 + + V ++DL AT R R VLA + +++ Sbjct: 180 SLFHLPVVLGVD-----LSDL----ATACRERGIG--VLAADGYGQLDLDQLQDENAARR 228 Query: 118 ------------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G+ +FG E GL++ E+AL++ ++ PV SLN+ A + + Sbjct: 229 LGNPGAESAYDLGRPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNVGTAATVCL 288 Query: 166 W 166 + Sbjct: 289 Y 289 >gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii F0264] Length = 259 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 17/149 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R M L L + K ++ + + ++ + + L Sbjct: 117 PGNLGTIMRTMEAAGFKNLILTKGSVDVYNPKTVRATMGG--IFNLNIIYETPENILKFL 174 Query: 85 ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 ++ TTA + + V +I + IFG E G+++ I S+ Sbjct: 175 KEKEYLIITTALHED------------AVSYGKIELKKKNAYIFGNEGGGVSDYFIENSD 222 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 P+ SLN+S AV + +++ E Sbjct: 223 IKSIIPIYGNIESLNVSIAVGIFLYKMRE 251 >gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13] gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653] Length = 297 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 33/184 (17%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 136 SLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195 Query: 65 ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ + FS L + T + +++++ Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------P 233 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + V ++ G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293 Query: 176 SEKN 179 E+ Sbjct: 294 DERG 297 >gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM 16069] Length = 231 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 20/180 (11%) Query: 1 MTPYAPQ-------LQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW 52 M P +P L ++ + + + +D N+ + R + + V P D Sbjct: 1 MLPRSPARLQKILTLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAVFPEDVK 60 Query: 53 PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + +S+ + + + + SNLK IA++ + + + A+ Sbjct: 61 FTG--HHTSSGSKRWVTTHK-HSNLKSGIAEM--------KAKGMQVLAAHFSDTAVDFR 109 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I Q ++ G E G+++E +++ + P+ + SLN+S A L+++E Sbjct: 110 -TIDYTQPTCLLVGSELVGVSDEAAEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQR 168 >gi|300863733|ref|ZP_07108664.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506] gi|300338240|emb|CBN53810.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506] Length = 54 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255 ++ +F R EV +LRG++ +D R + Sbjct: 1 MEKFRRLFNRAYPSTAEVSMLRGVLRQIDWALRTYPK 37 >gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068] Length = 177 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+ +AR LT+ +V G + + AD + + V L + +L Sbjct: 44 NLSNIARTASCCGLTK--IVACGQGKLDK--TVARDGADEL--EIEVHRTLLPVLKEL-- 95 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 R F + L ++ ++E F + V ++ G ER GL++EE++L N + Sbjct: 96 ------RKEGWFLAALEQTTDSVNMHEYQFP-RKVALVIGNERHGLSDEELSLMNVCLEI 148 Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171 PV L S N++ A + ++E Sbjct: 149 PVWGLPHSYNVANATAMALYEYCRQ 173 >gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia mollaretii ATCC 43969] Length = 358 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 220 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 277 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 278 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 327 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S SLN+S A +++ E + Sbjct: 328 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 358 >gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 245 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 23/162 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------VIDSV 71 +L N+G R+ + + + R R + A V + Sbjct: 100 VLDGVTDPHNLGACLRSADAAGVHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R +L+E + +I A + + I G E G Sbjct: 160 RTLRSLQE--RGI-WIVGAAG--------------EATHTVYQSKLTGPLAIAMGAEGKG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L + +IS P+ SLN+S A + ++E + + Sbjct: 203 LRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAVRQRL 244 >gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM 9799] Length = 235 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 28/170 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+ + R + ++ V + E R A V+V ++ +A+ Sbjct: 30 PHNLSAMIRTADAIGVPEVHAV-----FLGEDNRLRGGTATGSQQWVKVNRHQSIGDAV- 83 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEE 136 AR R V+ A L+E+ + I+ G+E+ G++ E Sbjct: 84 ---------ARMREQGMQVI-----ATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEA 129 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 +AL++ + P+ + SLN+S A L+++E + + + Sbjct: 130 LALADHDVIVPMVGMVQSLNVSVASALLLYEAQRQRQAAGMYGQRRLDEA 179 >gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038] Length = 213 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 58 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 116 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 117 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 165 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 166 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 213 >gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 279 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 15/171 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + K+ +S + Sbjct: 114 EEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 173 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV 121 + ++EA+ L R+ +LA A + G Sbjct: 174 FHLPVAVGVP-VEEAVRGL----------RDAGVRILAADGAGEDDLDDELDAGTMGGPT 222 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273 >gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64 L + K P+++L N+G + R+ F L + R P A + +A A Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ VRV +NL A+ ++ + + + L++ + SG ++ Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E GL A + + P++ SLN+S Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC 23834] Length = 248 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 22/176 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64 L N + P++ IL N+G R + ++ P R + + A Sbjct: 89 LDNLTEPPLLLILDGITDPHNLGACLRVADAMGVH--AVIAPKNRSVGLNATVSKVACGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V + L+E +I T + P V Sbjct: 147 AETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLFHYDIP--------------AAV 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G+ +A++S P+ SLN+S + +++ E + + Sbjct: 193 AWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRALKAG 248 >gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus donghaensis MPA1U2] Length = 246 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 23/159 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--- 74 IL + + N+G + R + L + R + +S A I+ V V Sbjct: 99 ILDELEDPHNLGSIMRTADAIGVHGLIIPKRRAVGLTGVVAKASTGA---IEHVPVVRIN 155 Query: 75 ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E +I T A+ +++ + + + +I G E G Sbjct: 156 NLSQTVDELKKRGVWIAGTDAKESVDYRRM--------------DAALPLAVIIGSEGKG 201 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ + + P+ SLN S A L+++E Sbjct: 202 MSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240 >gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705] Length = 169 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + L R + A SA A + RV N Sbjct: 18 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 76 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +A+ L ++ + E F + ++ G E GL Sbjct: 77 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 123 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +AI P++ SLN S A + ++ ++ + Sbjct: 124 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 169 >gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus cristatus ATCC 51100] Length = 243 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T +++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPVHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +++ P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFRNRV 242 >gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 248 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A + R Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIAR 159 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + A + Y T + SG + +I G E Sbjct: 160 VTNLSQTLDKLKAKGFWTYGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248 >gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK49] Length = 242 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 277 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + + N G V R + L + + KA +S + Sbjct: 106 EEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSL 165 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++ A++ L A R ++ L++R+ G IF Sbjct: 166 FHLPVAVGVP-VERAVSGLREAGA-----RVLAADGAGERDLDSELDDRLL-GAPTAWIF 218 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL AL++ ++ P++ SLN++ A + ++ + Sbjct: 219 GNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPAG 270 >gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63] Length = 260 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 24/154 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---- 78 Q N+G + R N+T + L S K S A + V V + Sbjct: 125 QDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFV-VSDTISGYLN 183 Query: 79 --EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + +A ++ ++P + G E GL E Sbjct: 184 AHSELESYAAVVSASA-DKITTTPFVSP----------------CIVAVGNEGNGLKEET 226 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ I+ P+ SLN + A +++WE M+ Sbjct: 227 ISACKHKITIPMEGRAESLNAAVAASIIMWEMMK 260 >gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1] Length = 164 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 30/168 (17%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +I L P++ N G + R L L +V+ S K + + ++ Sbjct: 11 NIIIALYRPEIPANTGNIGRLC--VGLNIPLHIVSKPSFIISSKEVKRA--GLDYWEHLQ 66 Query: 73 VF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + E +N K ++ + + N ++FGR Sbjct: 67 LVKHENENTFLEYCN-------------SNNKRIVPITKFGKHRYDEFQYSNNDILLFGR 113 Query: 128 ERWGLTN----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL ++ S + P++ S+N+S ++ +E + Sbjct: 114 ESTGLRESLWENDLENS---VYIPMSDNIRSINVSNTAAIVAYEAYRH 158 >gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas arsenicoxydans] Length = 265 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 23/179 (12%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP + Q + ++L Q N G + R+ + Q+ S K + Sbjct: 106 TPELTEPQRLLQS-AVLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAG 164 Query: 62 ANADCVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A +++ +F N+ EA+ AD+ + AT++ A + Sbjct: 165 MGAHFLME---IFENVDLEALIARADIP-VIATSS--------------HAEKRLYDLDL 206 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 Q V +FG E G+T +AL+ I+ P SLN++ + + +E + S Sbjct: 207 TQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAIESLNVAASSAVCFFEQVRQITARS 265 >gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104] gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104] Length = 263 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V N G + R L+ P ++ V +L Sbjct: 112 VAVQISEPGNAGTLIRLSDAMGAAG-VLLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDL 170 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNE 135 +EA+A + R +LA V +R + +FG E GL +E Sbjct: 171 REAVAAV----------REAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSE 220 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 A ++ + P+ SLN++ A + +++ Sbjct: 221 VAAAADHRVRIPMAGGAESLNVASAAAICLYQSARA 256 >gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311] Length = 229 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 17/172 (9%) Query: 18 ILVDPQL---GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +LV+ N+ + R+ + + V+ S S++ + + + Sbjct: 24 VLVE--HVDKPHNLSAILRSCDAVGVLEAHAVS--LSGRSRTYNSTAQGSQRWVP-LHSH 78 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N++EA+ T ++R A+ + F+G + G E+WGL+ Sbjct: 79 PNIEEAVK--------TLKDRGFHLYGTNLSVDALDYRDCDFTG-PTAFVLGAEKWGLSE 129 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 L + + P+ + SLN+S A +++E + + + P Sbjct: 130 NATKLMDTDVFIPMRGMVQSLNVSVATATLLFEALRQREAAGLAPSDGEGIP 181 >gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp. Ellin185] Length = 324 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+L V+ L N+G + R+ F + + R + A +SA A Sbjct: 164 PELPG--TPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSAGAA 221 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 I + SNL A+ + F+ + V P + L +R + Sbjct: 222 ARIPVAQ-ASNLTAALKEFKKAGFFVIGL-----DMDGDVDLP---GLELADR-----PL 267 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E GL+ + I+S P++ SLN A + +++ N + S + Sbjct: 268 VVVVGSEGKGLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVAVNRGLGSTR 324 >gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 292 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ I+ ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii ATCC 33806] gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium matruchotii ATCC 14266] Length = 320 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 17/172 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 +G +++L + N+G V R+ F + + R + A +SA + + Sbjct: 162 QGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + LKE + + + A + + V I+ G E Sbjct: 222 ATNITRTLKEFQQNGYQVVGLDAGGDTTY--------------DSYDGTGPVVIVVGSEG 267 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL+ + ++S P SLN S A +++ E + K + Sbjct: 268 KGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQRRAAGVKPSE 319 >gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 368 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 12/150 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 231 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 288 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 289 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 338 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174 S SLN+S A +++ E + Sbjct: 339 SIGGTGKVESLNVSVATGILLSEWWRQNQA 368 >gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 215 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 75/212 (35%), Gaps = 25/212 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC- 66 L + +++ + N+ + R+ + +L V+ R +E+ ++A A Sbjct: 14 LLHRQPDLTVVMDNVNKAHNLSAIIRSCDTVGIGELHAVSYRKSIYTEQ--DAAAGASKW 71 Query: 67 -----VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V+ L + ++ + A+++ +F+++ Sbjct: 72 TTLHLYHEMATVYKKLSD--QNMQILVASSSAGCMDFRNIDYTM--------------PT 115 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++ G E G++ + ++ I+ P+ + SLN+S A L+++E + Sbjct: 116 ALVVGAEWDGISEAALHGADQTIAIPMFGMVESLNVSVATALILFEAQRQRSAKGMYDSL 175 Query: 182 EQNTPATKGEL-LSFLDYLEISLEERGYFRPV 212 + L L L + G P Sbjct: 176 QMEPGLFHQTLFELAYPRLSRELRQEGTPYPR 207 >gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 265 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 25/162 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73 + V+ N G V R + L V+P +G ++ V Sbjct: 114 VAVEIGEPGNAGTVIRLAAAMGAHGVILGGHSVDPYNGK-----CLRASTGSIFSIPVVT 168 Query: 74 FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ A+ L + ATT + K + E+A +L G+ +FG E Sbjct: 169 EPDVPAALDALRGAGLQVLATTV---DGEKRL---DESADLL------GRPTAWLFGPES 216 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL ++ ++ + P++ SLN++ A + +++ + Sbjct: 217 RGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQA 258 >gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33] gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] Length = 297 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 261 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 25/173 (14%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + P+I++ + P+ NIG + R + + + NP+ + SS Sbjct: 106 ELTFHKENPLILIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSSVGTL 165 Query: 66 CVIDSVRVFSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++ KE ++ L + A +A + S Sbjct: 166 FTVPIAT--ASTKEILSFLQKENFTIYCAALSASVPYDSVSYR----------------G 207 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ + ++ S+ I P+ S+N+S + ++++E + Sbjct: 208 RTAIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMNVSTSAAVLIFEAVRQR 260 >gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185] Length = 270 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 14/167 (8%) Query: 3 PYAPQLQNSAKG-PVIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P L + G P +++ + N G V R + L + + K Sbjct: 108 PIDRPLADVLAGSPKFVVICTNVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVR 167 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 SS + + R S+++E A R ++ A + Sbjct: 168 SSVGSLWHLPISR-GSSIEEIFAAC----------RAAGLTLHAADGVGETFLPDVDLAT 216 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E WGL E + ++ P+ SLN++ A + ++ Sbjct: 217 PHAWVMGNEAWGLEPEVREQCDDVVRVPIYGHAESLNLAMAATVCLY 263 >gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 249 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R N+T + + R + +S A + Sbjct: 99 ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIA 158 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T ++ SG + +I G E Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTSG-KLALIIGNE 203 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E + I Sbjct: 204 GKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKI 248 >gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 249 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64 L + K P+++L N+G + R+ F L + R P A + +A A Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ VRV +NL A+ ++ + + + L++ + SG ++ Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E GL A + + P++ SLN+S Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 279 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 6/135 (4%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++ P NIG + R+ F L + KA +S + + +VRV + Sbjct: 118 VVFDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRV-PS 176 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +E + ++ A R V+ E V Q ++ G E GL+ Sbjct: 177 QREVME---WVAA--RRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAW 231 Query: 137 IALSNAIISFPVNPL 151 L++ ++ P+ Sbjct: 232 KELADELVRIPMTGA 246 >gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 21/156 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR----- 72 + V+ N G + R + S KA +SA + + R Sbjct: 122 VCVETNDPGNAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNIS 181 Query: 73 -VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V LK A A T + + A + Q +FG E G Sbjct: 182 DVMGQLKAA----GLSIAATTMGGDVSL------DDAAEVVA-----QPTAWLFGNEAHG 226 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L E I ++ +S P+ SLN++ A + +WE Sbjct: 227 LPQELIDAADHRVSIPIRGHAESLNLATAAAMCMWE 262 >gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 271 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 19/166 (11%) Query: 6 PQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARS 59 P LQ+ K +++L +N+G + R F + +V+ K+ Sbjct: 109 PSLQSFLKNLPEKALILVLCGISNHDNMGSIFRNAAAFA-SHGIIVDKTSCDPLYRKSIR 167 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 SA A + A D++ I A + N L+P +A + + Sbjct: 168 VSAGA------ALKVPYTQNA--DINDIIA-ALHDENFHLYALSP--SAPHTLRQAHKTK 216 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +IFG E GL + S A+ P+ F SLN++ A + + Sbjct: 217 RTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDSLNVATASGIAL 261 >gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64 L + K P+++L N+G + R+ F L + R P A + +A A Sbjct: 91 DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ VRV +NL A+ ++ + + + L++ + SG ++ Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E GL A + + P++ SLN+S Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232 >gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter sp. 1501(2011)] Length = 262 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 26/168 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + ++ P+ + S A ++ V + Sbjct: 111 VLDQITDAHNLGACLRTAAAMGVD--AVICPKHHSASLTPTVAKVSVGAMEIMP-VIAVT 167 Query: 76 NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL I +L F+Y T E A L + G V II G E G Sbjct: 168 NLARCIENLKQSGVFVYGTAL------------DETAKALPDVDLKG-KVAIIMGSEGEG 214 Query: 132 LTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ P+ + SLN+S A ++++E Sbjct: 215 MRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 262 >gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera] Length = 1306 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L++ + KA +S A + + S Sbjct: 1141 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLP---IVS 1197 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+ + +N K P + + ++ G E G Sbjct: 1198 GSWIHLETLKNEFQMKM-IAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSG 1254 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ + L ++S P+ F SLN+S A + ++ Sbjct: 1255 LSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 1293 >gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 459 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L++ + KA +S A + + S Sbjct: 303 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLP---IVS 359 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L+ + +N K P + + ++ G E G Sbjct: 360 GSWIHLETLKNEFQMKM-IAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSG 416 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L+ + L ++S P+ F SLN+S A + ++ Sbjct: 417 LSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 455 >gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 185 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 24/183 (13%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71 I+L +P++ +N G +AR N L L+ P +K + + + Sbjct: 5 IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAVLDYGGEV---EI 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--LNERIFSGQNVGIIFGRER 129 R +L+ + A +N + L K ++ V + ++ +FGRE Sbjct: 59 RRHDDLRAFL----------ATLPDNAEMYLISKFSSKVYTDVDYTDESKDYYFVFGRET 108 Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 GL + ++ + P++ + N+S + ++++E + + Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168 Query: 189 KGE 191 K + Sbjct: 169 KDD 171 >gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 278 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 21/158 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L EN+G + R + + + S + + Sbjct: 130 VVLEGVNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGT 189 Query: 77 -------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L + R R L P A + R + V + G E Sbjct: 190 PTTWQRSLDDL------------RERGFRTIALTPAAEAPLS--RAVDAEKVAFVLGAEG 235 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 GLT + + + P+ SLN++ A + +E Sbjct: 236 PGLTEHAMRACDVRAAIPMTDGTDSLNVATAAAVAFYE 273 >gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1] gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 255 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R+ L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ +I T EA + + ++ +G + +I G E G+ Sbjct: 159 LARTLEKLQQRGLWIVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E Sbjct: 205 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244 >gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 256 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 21/161 (13%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVID 69 KG I+L Q N+G + R + L D + + RS + + Sbjct: 105 PHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSMQGSHFHIP- 163 Query: 70 SVRVF-SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 VF +NL+E + + A TA +R++ + + +V I+ Sbjct: 164 ---VFQANLQEYLPILKEKGVQVAVTALHRDSKDYSV------------LQGATDVAIVV 208 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G++++ I L++ +++ P+ SLN+S A L+++ Sbjct: 209 GNEGQGVSDDVIDLADVVVTIPIFGKAESLNVSIASALLMY 249 >gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM 16841] Length = 246 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 14/159 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 + IL + + N+G + R N + + R + +SA A +V Sbjct: 100 IFILDNIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKV- 157 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +NL AI +L V A + + G +G++ G E G++ Sbjct: 158 TNLTAAIKEL---------KEKGLWFVCA-DMGGTEMYKLDLKG-PIGLVIGNEGEGVSK 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + I S P+ SLN S A ++ +E + + Sbjct: 207 LVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245 >gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2] gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719] Length = 248 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + Q +V P+D + R + A VI V V + L++ Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T A ++ ++ G E G+ Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E + Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1] gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58] gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1] gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1] gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192] gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58] gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016] Length = 248 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + Q +V P+D + R + A VI V V + L++ Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T A ++ ++ G E G+ Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E + Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064] gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 278 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 15/172 (8%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S V +L + + N G V R + L + + KA +S + + Sbjct: 118 SRPTLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSHFHLPV 177 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFG 126 ++ A+ L R +LA A + G IFG Sbjct: 178 AVGVP-VERAVQGL----------REAGVRILAADGAGEHDLDAELDAGTMGGPTAWIFG 226 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E WGL E AL++A++ P++ SLN++ A + ++ + Sbjct: 227 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQRTGGAR 278 >gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK355] Length = 233 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 85 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 144 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 145 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 189 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 190 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 233 >gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Sphingomonas sp. S17] Length = 247 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 23/151 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDSVR 72 P+++L N+G + R+ F L +V R P + ++ A + +R Sbjct: 102 PLVVLDQVTDPHNVGAILRSAAAF--DALGIVTQDRHAPPESGTVARSASGALETVPWIR 159 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V NL A+ ++ + T A + Q + I+ G E Sbjct: 160 VV-NLARALEEIAEAGFWRIGLTG--------------HANQTLAQAMGTQRICIVLGAE 204 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G+ A + + P++P SLN+S Sbjct: 205 GEGMRQNTEAHCDELAKLPISPKVESLNVSN 235 >gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1] gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1] gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1] gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94] gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99] gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo] gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] Length = 297 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330] gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686] gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 297 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia frederiksenii ATCC 33641] Length = 363 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 225 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 282 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 283 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 332 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S SLN+S A +++ E + Sbjct: 333 SIGGTGRVESLNVSVATGILLSEWWRQNSAQ 363 >gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC 700633] Length = 252 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 17/150 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA-- 80 Q N+G + R + L ++K S + + NL + Sbjct: 116 QDPGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHV--AIYHENLMDVYG 173 Query: 81 -IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + A TA +R+ + + +V I+ G E G+ +E I Sbjct: 174 KLKENDIPIAVTALHRD------------AKDFKWLTGRDSVAIVVGNEGNGVRDELIES 221 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ II P+ SLN++ A +++++ Sbjct: 222 ADFIIQIPMFGQAESLNVAIATGVLMYQTR 251 >gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC 35406] Length = 182 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 12/155 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVFSNLKEAIADL 84 N+G + R F L L L P ++ A+ + S L EA+ L Sbjct: 37 NVGSLFRTADAFRLEGLILCGITGLPPHPMIHKTALGAELSVAWEHAE--STL-EAVEQL 93 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++ ++ + + V ++ G E G+ ++ IA + I Sbjct: 94 R-------SKGYKIWALEQATDSLCPEESPLTPPERVALVVGNEVHGVADDVIACVDRCI 146 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 P SLN+S + + ++ + + + Sbjct: 147 EIPQYGTKHSLNVSVSAGIAIYSIVAEYLRTMPNP 181 >gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21] Length = 249 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L+ + +G V++L Q N+G + R+ + + R + A SSA A Sbjct: 89 ELKGNQEGLVLVLDSVQDPHNLGALIRSAACAGAHAVVIPKDRAAGVTAVAEKSSAGATE 148 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 I +V +N+ +A+ L + F A A L ++ FSG V ++ G Sbjct: 149 TISVAQV-TNISQALESL---------KKAGFWIYGADGSARSTLYQQDFSG-PVALVIG 197 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G+ +A++S P+ SLN S A +M++E + + Sbjct: 198 GEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEVVRQRM 244 >gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus oremlandii OhILAs] Length = 250 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 23/161 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R + + + R + SSA A + +V SN+ Sbjct: 100 ILDEIMDPHNLGSMMRTADAVGVDGIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKV-SNI 158 Query: 78 K---EAIADLHFIYA---TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + I D+ A + + + P + ++ G E G Sbjct: 159 AQTIDKIKDMGIWVAGADMSGSKEHYNMDLKGP----------------LALVIGNEGEG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + +I P+ SLN S A ++++E Sbjct: 203 ISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQR 243 >gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp. CNPT3] Length = 246 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 16/168 (9%) Query: 8 LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64 L+N + P ++IL N+G R+ + + + P+D + R + A Sbjct: 91 LENLTEAPFLLILDGVTDPHNLGACLRSADAAGVHAVII--PKDNSASLTPVVRKVACGA 148 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + ++V + +A EA + + FSG + I Sbjct: 149 AESVALIQVTN-----LARCMRSL-----QDKGIWIYGTAGEATGSVYDCQFSGG-IAIA 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +A+I P+ SLN+S A + ++E + Sbjct: 198 MGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEVVRQR 245 >gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9211] Length = 413 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 19/173 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I L N+G + R+ L L R + +A A RV + Sbjct: 243 IALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHFPVARVVNL 302 Query: 76 --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L E + D + + + + + ++ G E GL Sbjct: 303 NRSLIE-LKDAGYSVIGLAG--------------DGDFVLNEVDLLGPLVLVIGSEDKGL 347 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + + ++ P+ + SLN S A + ++E + Sbjct: 348 SVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIASKGWMKGLSGQAPSPK 400 >gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f] Length = 361 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 16/165 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q++A G V+ L N+G V R+ F + + R + A +SA A Sbjct: 199 ATQSAAPGLVVALDGVTDPRNLGAVVRSAAAFGANGVVVPERRAAGMTAAAWKTSAGAAA 258 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + R + L+ F+ A + + +++ + + + Sbjct: 259 RLPVARAVNLTRTLRSFAESGLFVVGLAA-------------DGEVDIDDLQVAADPLVL 305 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + G E GL+ + + P+ SLN A + + E Sbjct: 306 VVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIALAEI 350 >gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 235 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 19/163 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+IL + Q N G + R+ F + + + +E +S A +D V+ Sbjct: 87 KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVK 146 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +N+ +AI+ L ++Y ++ P ++ G E Sbjct: 147 V-TNISDAISKLKKLDYWVYGAEGEGSKDYSQEKYP--------------SRTALVLGSE 191 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + + +I P+ SLN+S A +++ E +++ Sbjct: 192 GNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234 >gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] gi|89517831|gb|EAS20487.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7] Length = 175 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 9/161 (5%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ +I+L + + NIG V R+ + + ++ L P + R ++ A + Sbjct: 19 ESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTALGATETV 78 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + I +L+ TT E ++ L S + V ++ G E Sbjct: 79 AWEYRDHTI-DIIKELNEQGVTTCAIEQA--------EDSVSLRGFKPSTKKVAVVMGNE 129 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G+ E + + +I SLNIS +++++ Sbjct: 130 VKGVQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIYDLF 170 >gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822] gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis] Length = 274 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L ++ Q N+G + R + ++ L S K S A Sbjct: 120 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 179 Query: 66 CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + +L EA+ D+ + T AR+ + + + L + Sbjct: 180 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPAR---------------C 221 Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172 +FG E G+ + + + P + SLN+ A + ++E Sbjct: 222 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 273 >gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 311 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G V R++ F +V P +A +A A Sbjct: 162 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGAAA 214 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + A + A A + V + L + G V I+ G E GL+ Sbjct: 215 RTPVARA---TNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLS 271 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN A ++++E Sbjct: 272 RLVGETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRR 310 >gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315] Length = 260 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 17/171 (9%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K S Sbjct: 103 PAHP-LPARVTETSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A ++ + ++ + R + V Sbjct: 161 MGAHFLLS---IHEDVD--------AGELSGR---LAVPIALTDSHGAQAVYDCDLSAPV 206 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 207 AWVFGNEGAGVSAFWCDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552] Length = 244 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 51/153 (33%), Gaps = 17/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 + N+G + R + + + R + S A + +V + L++ Sbjct: 103 EDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLED 162 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ + +N + ++ I+ G E +G++ Sbjct: 163 LKKHSFWVVGC---DLDNAQDYRQIDYNMPLV-----------IVIGSEGFGISRLVKKT 208 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A +++++ + Sbjct: 209 CDFNVVLPMMGHVTSLNASVATAVILYQVYNSR 241 >gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C] Length = 323 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 30/171 (17%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N ++ L N+G + R++ F + + P +A +A A Sbjct: 165 NGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVI-------PERRAAGMTAGAWKTSA 217 Query: 70 S------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 V +NL A+ D + A E + + G Sbjct: 218 GTAARTPVSRVTNLTRALQDYKKAGITVVGLAA-------------EGTHEVQDLDALGG 264 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V I+ G E GL + ++ P+ SLN A ++++E Sbjct: 265 PVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAAR 315 >gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 249 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 20/168 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + PV++L P+ N G V R F T + D W R + + Sbjct: 102 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 156 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L + + + + FG E Sbjct: 157 HFATAVERL---------------TAGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 201 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 R GL+ E A ++ +I+ P+ + S N++ +V + ++ + Sbjct: 202 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHWSATGGAPA 249 >gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 292 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPD--EDPTHIDKLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens] Length = 280 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 19/182 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P +Q+ + L + +N G + R+ T + + S +SA A Sbjct: 114 PSIQDGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGAL 173 Query: 66 CVIDSVRVFSN----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 V++ ++ N L ++ + ++ R L P G Sbjct: 174 EVME-IQSCRNMMKFLDTSVQNGWRAVGASSEPRALPIQELEP-------------GLPT 219 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 ++ G E GL ++S + SLN+S A +++ + + S SE V Sbjct: 220 ILVLGNEGRGLRTNVKRSCTELVSIKAD-AVDSLNVSVAAGILLHDLLSRSTQQSESAVS 278 Query: 182 EQ 183 Q Sbjct: 279 AQ 280 >gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 255 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 18/179 (10%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 +T ++++ + P+ IL N G R + + R + Sbjct: 84 ITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGAGVDAAVIPKDRSASINATVSK 143 Query: 60 SSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S A V+ + V ++KE ++ T + A I Sbjct: 144 VSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGT--------------DDEATKSIYDID 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ I+ G E G+ + ++ P+ + SLN+S A + ++E + + Sbjct: 190 LTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVLRQRLSK 248 >gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 252 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 20/168 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + PV++L P+ N G V R F T + D W R + + Sbjct: 105 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 159 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L + + + + FG E Sbjct: 160 HFATAVERL---------------TAGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 204 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 R GL+ E A ++ +I+ P+ + S N++ +V + ++ + Sbjct: 205 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHWSATGGAPA 252 >gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848 str. F0332] Length = 285 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 9/166 (5%) Query: 8 LQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L+ GP ++L + N+G + R+ + + + + ++ S Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179 Query: 66 CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + R+ + + +++ + T A + L V + + + I Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYT--TAALALTDDAVALDAFSRLEVCSAK---DSKIAI 234 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I G E GL + IA + + P+ SLN++ A+ + WE Sbjct: 235 ILGAEGDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280 >gi|167945644|ref|ZP_02532718.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 87 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%) Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS--NAI 143 ++A T R R N+ E F + ++FG E GL + Sbjct: 7 RLFACTTRARRNY-------------AEAAFEAGD-ALLFGPETRGLPQALLDSLPEQQQ 52 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ P SLN+S AV L+++E Sbjct: 53 LRIPMRPEVRSLNLSNAVALILYEAWRQQ 81 >gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 6 PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P L P++ +L N+G R + + + R + + + ++ A Sbjct: 87 PALLAQHTAPLLLVLDGVTDPHNLGACLRCADAAGVNAIIIPRNRSAYLNATVKKVASGA 146 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120 + ++V + L+ I TT EA + + F Sbjct: 147 AETMPLIQVTNLARTLRLLQEHNILILGTTI-------------EADSHIYQTSFKFTSP 193 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G+ N ++ P+ SLN+S AV + ++E + + S Sbjct: 194 IALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFEVVRQRLSS 248 >gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533] gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533] gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 251 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R + + + R + +S A + RV K Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKM 169 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + K + ++ G E G++ + Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NAKGKTVLVIGNEGKGISPLLLKQ 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN S A ++++ Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum] Length = 487 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 19/167 (11%) Query: 5 APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + P+++ L + +N G + R F ++ + + + A +SA Sbjct: 326 KEAMDKLKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAG 385 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNV 121 A ++ ++ + +Y ++ N ++ + E + LN + Q Sbjct: 386 A---LEDTPIYKTMS--------MYGFLKGSKENGWKIMGTSLGEDSKPLN-SVKLTQPT 433 Query: 122 GIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLM 164 ++ G E +G+++ I + + P NP SLN S + ++ Sbjct: 434 ILVIGNEGFGVSDNIIQECDETVKIPVSNKANPKLESLNASVSAGIV 480 >gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9] Length = 259 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 24/168 (14%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S + +++L Q N+G + R ++ + L S K S+ + + Sbjct: 105 SMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKI 164 Query: 71 VRVFS--NLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----IFSGQNVGI 123 L E + A + I AT A+ L+ + + + + Sbjct: 165 YHHVDLIGLIEILQAGGYEIIAT-----------------ALDLSSKNLFELNLNKKIAW 207 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 IFG E G+++E ++L P+N SLN+ A + ++E Sbjct: 208 IFGNEGNGVSSEILSLGLEKCIIPINQNIESLNVGVAASICLYEQYRQ 255 >gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083] Length = 313 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 12/160 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G V R++ F LV P +A +A A S Sbjct: 164 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVLV------PERRAAGMTAGAWKT--SAGT 214 Query: 74 FSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +A + A A + V + + + G V I+ G E GL Sbjct: 215 AARTP--VARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGL 272 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P+ SLN A ++++E Sbjct: 273 SRLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312 >gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 268 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG R+ LV PR P ++ S + R+ EA Sbjct: 130 NIGAAFRSAAALG-ADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRL-PEWSEAKP--- 184 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + LA + A+ L+ G + V ++ G E GL+ +A ++ ++ Sbjct: 185 -----LLHAAGLHLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTVV 239 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN++ A + +WE Sbjct: 240 TIPMAGGVDSLNVAAASAVALWELGRGR 267 >gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A + R Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIAR 159 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + A + + T + SG + +I G E Sbjct: 160 VTNLSQTLDKLKAKGFWTFGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248 >gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum DSM 43043] Length = 251 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 11/172 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P + ++ V++L N+GM+ R+ + +V PR G S Sbjct: 89 MLPLEVAIDHADLRTVLVLDGITTPANVGMILRSATAAGIDG--IVVPRRGVASIDPLVV 146 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+A + + + A TA F V + L + Sbjct: 147 KASAG-IAFRAPILKTF-------TAVEAVTALKEAGFHIVGLDADGDDDLFTAHLR-ER 197 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V ++ G E G E L + +S P+ SLN+S A ++ +E + + Sbjct: 198 VAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVRRA 249 >gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 332 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVRVFSNLKEAI 81 N+G + R+ F L L R + A +SA A I + + + LKE Sbjct: 192 PRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALAANLTATLKEFK 251 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 F+ A + + A+ L +R V I+ G E GL+ + Sbjct: 252 KQGVFVLGL-AGDGDVSLP-------ALELADR-----PVVIVVGSEGKGLSRLVTETCD 298 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 ++S P++ SLN A + +++ Sbjct: 299 QVVSIPISTATESLNAGIAASVALYQV 325 >gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 263 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 19/148 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIAD 83 N+G + R+ F + + L + + A + ++ V++F S+ + Sbjct: 121 NLGAIIRSAAFFGIENIVLTKEDKQASITTSAYRVAQGG---MEFVKIFKVSSTAWFLRQ 177 Query: 84 LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 T R + L I + I+ G E G++ E L Sbjct: 178 CRGRLTCIGTDLRAHHEI----------ADLGRLIEKDEACVIVLGNEERGISEEAKKLC 227 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 +I + SLN++QA L Sbjct: 228 AHLIKIKGSGNVESLNVAQAATLFCHSL 255 >gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 241 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 19/158 (12%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N +I L Q NIG + R +F +V D + +EK SS A ++ Sbjct: 91 NIKANKIIALNKLQDPGNIGTIFRLAKSFGFDS-VIVENIDIY-NEKIIRSSQGAMFSLN 148 Query: 70 SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ L D +Y+TT +I LN+ F + + I+ G Sbjct: 149 IIKTNDLSKELSAFKKDDFLVYSTTLNK------------NSIKLNDIDFRNKKIVIVLG 196 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 E G+ + I LS+ + P+ F SLN++ ++ Sbjct: 197 NEGNGIDEKIIDLSDFNVYVPI--EFESLNVACCGAII 232 >gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length = 278 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L ENIG + R + + N + S + + Sbjct: 123 VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAG 182 Query: 76 N-------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L E A A H + L P A+ L + + + V ++ G Sbjct: 183 TYTTWQRSLTELADAGFHLV-------------SLTPDPEAVHLEDALAGREKVALLVGA 229 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GLT + ++ P+ P SLN++ + + +E Sbjct: 230 EGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 269 >gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides BS1] Length = 216 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ + + V+ + R +A ++ + ++ A A Sbjct: 31 PHNLSAIIRSCDAVGIETVHAVSEEKIIKN---RQRAARGSSKWVNLELHETIEHAFA-C 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143 R VL ++ R I+ G E +G + ++ ++ Sbjct: 87 ---------LRAQGMQVLVAHHHEESVDFRTLDYTLPTAIVMGAELFGPSATTLSGADHC 137 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 I P+ + SLN+S A ++++E + N Sbjct: 138 IHIPMQGMVESLNVSVAAAVILFEAQRQRTEAGLYNRP 175 >gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15] Length = 209 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIADLH 85 N+G +AR F L L L ++ S AD ++ V L + IA+ Sbjct: 67 NLGGLARTAEAFGLDSLVL-GSASFALDPSFKAMSMTADMWLNIEEVRPYKLAQWIAE-- 123 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + + + V + + V + Q ++ G ER G E ++L + + Sbjct: 124 -------KRKEGYSVVCLEQSSKSVYLQDAKLPQKTVLVLGNERRGCPEEILSLCDMTVE 176 Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168 SLN+ + + VW+ Sbjct: 177 IQQLGNIRSLNVHVSCAIFVWKW 199 >gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens] Length = 267 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63 + N+ K + L D Q N+G + R + + +VN R S +SA Sbjct: 97 KTAMANNRKALWLGLNDVQDPMNLGALIRTAALMGVNR-VVVNSRKTARLSAVVSKASAG 155 Query: 64 ADCV--IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A V I +V+ S + + + + I T + A+ +G+ Sbjct: 156 AMEVYPIYAVKNLSKYLDYLVENDWNIIGTVGHKE-------VNQYQAMSCQNFNHNGKP 208 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECM 169 ++ G E +G++ N+ ++ P + P SLN+S A ++++ Sbjct: 209 TILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDIDSLNVSVAAGILLYSLR 261 >gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255] gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255] Length = 147 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P + N+G + R F ++ L ++ P S K+ SA +D + ++ Sbjct: 7 QPDIAPNLGSMIRLCACFGVS-LDIIEPCGFPLSLKSLRRSA-----MDYADITDMVR-- 58 Query: 81 IADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 H + T NR + +L K AI+ + + S ++ GRE G+ NE Sbjct: 59 ----HDSWETFQANREPGRLILLTTKADAILWDFKFKS--TDTLVMGRESAGVPNEVHNA 112 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ I P+ SLN++ + + E ++ Sbjct: 113 CDSHIKLPMYGKARSLNVAMTAGMALSEALKQ 144 >gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16] Length = 278 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 27/167 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF- 74 ++L + NIG + R+ + LV+ P ++ S I + Sbjct: 124 VVLENITDSTNIGAIFRSAAALGMDG-VLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHG 182 Query: 75 ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + L+ + A T + + VL + + I+ Sbjct: 183 DAFQWPQPGIATLRS-LGFSTAAMALTDNSISIEDPVL-------------ADAEKLAIV 228 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL E IA + P+ SLN++ A ++ W+ Sbjct: 229 LGSEGNGLCEETIAHCDYTARIPMYHGVDSLNVAAAGAVIFWQLRAR 275 >gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 24/171 (14%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++IL N G + R + + + R + +S A + Sbjct: 96 QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155 Query: 69 DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 RV +NL +A+ L +++ T T + + + Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G++ + +I+ P+ SLN S A ++++E N + Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248 >gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6] Length = 260 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 18/169 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 L ++L Q N+G + R+ + P + S K S A Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163 Query: 65 DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ + +++ +A+A AR V V Sbjct: 164 HFLLS---IHEDVEPDALA---------AR---LDVPVALTDSHGAQAVFDCDLAGPVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 172 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 30/169 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLT-QLRLVNP------RDGWPSEKARSSSANADCVID 69 I+L +P++ N G +AR L L+ P + + + R+S+ + +D Sbjct: 4 IVLFEPEIILNTGNIARMC--VGFNANLHLIRPYGFILDKARFDKDFVRASANH----LD 57 Query: 70 SVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +++F + E IA + I Y T R K+ K + ++V + Sbjct: 58 ELKLFEYDDFYEFIAKNNIIENQIYFFT---RYGTKAPCDYKY-------ANLNKEDVYL 107 Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG+E G+ ++ + I P + SLNI+ +V + ++E + Sbjct: 108 VFGKESTGIDHDILRKYPQNWIRIPTSINLRSLNIANSVAMGIYEVLRQ 156 >gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7] gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + L ++ P+D + R + A VI V V + L++ Sbjct: 108 PHNLGACLRTADAAGV--LAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T A ++ ++ G E G+ Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E + Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244 >gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana] gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana] Length = 400 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 16/161 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L Q N+G + R+ FN L+ ++KA +S A + + S Sbjct: 246 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLP---IVS 302 Query: 76 ------NLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRE 128 L E + + A K V E A L E+ + +I G E Sbjct: 303 GNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEK-----PLCLILGSE 357 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ + + ++S P+ F SLN+S A + ++ Sbjct: 358 GNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQ 397 >gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5] gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5] Length = 240 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 14/158 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I++ +N+G + R + L + R +E +S+ A + +V S Sbjct: 96 IVIDHITDPQNVGNLLRTCEVLGGVGAL-ISKDRTSPINETVVKASSGAVFHLKISKV-S 153 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + + + E + V ++ G E G++ Sbjct: 154 SLSRELKNFQKMGG-----------WVFAVEKGGKDIREVDIPLPVALVLGSEDKGVSKS 202 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +S+ I++ P+ SLN+ A + +WE + + Sbjct: 203 VLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAKKIL 240 >gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 352 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 16/161 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L Q N+G + R+ FN L+ ++KA +S A + + S Sbjct: 198 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLP---IVS 254 Query: 76 ------NLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRE 128 L E + + A K V E A L E+ + +I G E Sbjct: 255 GNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEK-----PLCLILGSE 309 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ + + ++S P+ F SLN+S A + ++ Sbjct: 310 GNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQ 349 >gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Length = 350 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 NI R+ + + +V+ R S A+ +D + + KE + Sbjct: 166 GNISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLD-IEFWDTPKECFKVLK 224 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + ++ + I+ G E G+++E + LS+ Sbjct: 225 SRGYRIATT----HLGMDTVSIYDM--------DWSCPTAIVVGNEGRGISDEALELSDL 272 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+N + S N+S A +++ Sbjct: 273 RCSIPMNGMVDSFNVSVAAGILMH 296 >gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 286 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPVARAAP- 193 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E IA + + AT +++++ K + V ++ G E+ G Sbjct: 194 -EEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L ++ ++A+ P SLN++ A +M++E + + +E Sbjct: 239 LPDQLAGQADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284 >gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC 11568] Length = 279 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 32/180 (17%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +Q AK + L + N+G + R + + L+ S +A ++ + Sbjct: 121 AIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRATMGS-- 178 Query: 67 VIDSVRVFSNLKEAIADLHFIYATT----ARNRNNFKSVLAP------KEAAIVLNERIF 116 ++A T +R P + A Sbjct: 179 --------------------VFAVTISKASREEFLAWRAQWPGSVIGTRLDATHGYRDSP 218 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E+ GLT+E A + + P+ SLN++ A +MV+ + + SS Sbjct: 219 VRHPAIIMMGNEQAGLTDELAAACDLNVKIPMRGRADSLNLAVATGVMVYAVTDAAYGSS 278 >gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae PB189-T1-4] Length = 390 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 11/146 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R+ T + + N R A +SA A + V+V +N+ A+ +L Sbjct: 223 EGNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQV-ANVARAVLEL 281 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 +N+ +A E A + NV ++ G E+ G++ + Sbjct: 282 ----------KNHGFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFEC 331 Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170 P + SLN++QA +M +E + Sbjct: 332 KLPQRGVIESLNVAQAATVMCYEWLR 357 >gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 24/171 (14%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++IL N G + R + + + R + +S A + Sbjct: 96 QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155 Query: 69 DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 RV +NL +A+ L +++ T T + + + Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I G E G++ + +I+ P+ SLN S A ++++E N + Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248 >gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b] Length = 275 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 25/166 (15%) Query: 14 GPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 P ++L+ N+G + R+ F ++ P + + + + A ++ Sbjct: 126 PPRVLLLDRVSDPHNVGAILRSAEVFGAC--AVIAPH-RHSAPETGALAKTASGALERQP 182 Query: 73 V--FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGII 124 +NL EA+ + ++ L A E G+ V ++ Sbjct: 183 YLRVTNLGRAIEALQGMGYVV-------------LGLAGEAERTIEEALEGRRSGPVALV 229 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E GL + + ++ + F SLN+S A + ++ Sbjct: 230 LGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275 >gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus 5a2] Length = 246 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 23/165 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSV 71 +IIL N+G + R L L P+ G S A +SA A + Sbjct: 96 PLIIILDGVTDVGNLGAIVRTAVCVGAHALVL--PKQGSASLGSGAMKTSAGALAHLPIC 153 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 R +NL+ +I L + A E ++ I+ G Sbjct: 154 R-EANLQASINYLQNSGLQVIACH--------------EKTQTSIYQVKLTVPTAILLGS 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + + + S P+ SLN+S A ++++E Sbjct: 199 EDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQR 243 >gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 294 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 23/177 (12%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 P QL +A+ I+ +V+P N+G + R+ + L+ P P +A Sbjct: 130 PSVEQLCKNARRVAILENVVNPT---NVGAIFRSAAALGM-DAVLLTPACADPLYRRASR 185 Query: 60 SSANADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 S I + + + L + A A R++ S+ E Sbjct: 186 VSMGTVFQIPWTYFDKNACWPDGAMDVLHKLGYKTAAMA-LRDDSVSIDD---------E 235 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ S + + I+ G E GL + IA + + P+ SLN++ A + W+ Sbjct: 236 KMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292 >gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC 7942] Length = 519 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 18/193 (9%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 ++ Q + + PVI++ N+G + R L + P+ A Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAEALGAHGLVI--PQRRAVGVTAAV 378 Query: 60 SSANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A ++S RV NL A+ +L F A EA ++E F Sbjct: 379 AKVAAGA-LESFPVARVV-NLNRALEEL---------KDAGFWIYGAAGEAKQSIHETSF 427 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 SG V ++ G E GL+ + +IS P+ SLN S A ++++E + Sbjct: 428 SG-PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLT 486 Query: 177 EKNVKEQNTPATK 189 + AT Sbjct: 487 HHLEGIADNGATA 499 >gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 301 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 21/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L ENIG + R + + N + S + + Sbjct: 146 VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAG 205 Query: 76 N-------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L E A A H + L P A+ L + + + V ++ G Sbjct: 206 TYTTWQRSLTELADAGFHLV-------------SLTPDPEAVHLEDALAGREKVALLVGA 252 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GLT + ++ P+ P SLN++ + + +E Sbjct: 253 EGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 292 >gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus MRP] Length = 221 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 29/200 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 N+ + R V P+ G + +S+ + SV+ ++ EAI Sbjct: 30 PHNLSAILRTCDAVGAMTAHAVPPQSMSLGSFRSRIFEASSGSAHKWVSVQQHASALEAI 89 Query: 82 ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 L + AT R+ P + ++ G E++G+++ Sbjct: 90 RTLQGQGVQVLATHLSQRSVD--YREPDYT-----------RPTCVLLGAEKFGVSDVAA 136 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-- 195 ++A I P+ + SLN+S A +++E + + + + EL Sbjct: 137 EAADANIVIPMMGMVQSLNVSVAAATILFEAQRQRLEAGMYAQPQL----SDEELRRMAF 192 Query: 196 ---LDYLEISLEERGYFRPV 212 L +E+G P Sbjct: 193 RWAYPDLAEKYDEQGVEYPP 212 >gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13] gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13] gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13] gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653] Length = 286 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A +L + P++ +L N+G + R+ F L + S +++ Sbjct: 125 RARKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3] Length = 269 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA--IAD 83 N+G + R+ ++ LV+PR G P ++ S + R+ S ++ + + Sbjct: 132 NVGAIFRSAAALDI-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKE 190 Query: 84 LHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 F A TA R+ + + + ++ G E G++ E +A Sbjct: 191 HGFTVAALELTADARDVDAV-------------AAQNPEKLALVLGTEGAGMSAETLAAV 237 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ SLN++ A + WE Sbjct: 238 DLAVKIPMRNGVDSLNVAAASAVAFWELRAR 268 >gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] Length = 208 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A Q G V+ L N+G + R+ F + + + R + A +SA A Sbjct: 47 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 106 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I + +NL +A+ F A LA + + + F G V I+ Sbjct: 107 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 156 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL + + S P++ SLN S A + ++E Sbjct: 157 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 207 >gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 259 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 22/166 (13%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCV 67 K P I IL + N+G + R + + L N + + S + + Sbjct: 107 KNPFILILDGIEKPGNLGSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKIL 166 Query: 68 IDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 I+ + + S L+ + V E AI L FS + I+ G Sbjct: 167 IEKKKSIISWLQ---------------KKKIEIVVTGFHEKAIQLYRTKFS-SRLAIVLG 210 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ + +++ I++ P+ SLN+S A+ +M++E + Sbjct: 211 SENKGVSPIWLNIAHKIVTIPMFGDMDSLNVSNAMSIMIYEVLRQR 256 >gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus castenholzii DSM 13941] Length = 248 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 12/166 (7%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L P ++L+ Q +N+G + R + + + R + ++SA A Sbjct: 88 TLAEERNEPALLLMLDHIQDPQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGA 147 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + V SNL I + V + + + + + ++ Sbjct: 148 VEHL-RIVVVSNLAATIERVQHA---------GVWVVGVEDDERARVFDEVDLDLPLTLV 197 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E GL + ++ P+ SLN++ A ++++ Sbjct: 198 LGAEGSGLARLTRERCDFLVRLPMRGRIASLNVAVAGSIVLYHAWR 243 >gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666] gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666] Length = 264 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 21/167 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68 +A+ +++L N+G R ++ P+D A + ++ A + Sbjct: 113 TAQPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETM 170 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + L E + T+ + A + V ++ Sbjct: 171 PYFMVTNLARTLGELKERNIWCIGTS--------------DDAPKTIYDVDLKGPVALVL 216 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 217 GAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 263 >gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 156 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 17/169 (10%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVI 68 A+G I L P++ N+G + R F++ + +V P S+ +A A Sbjct: 2 ARGMRIALYQPEIAGNVGAILRLAACFSVP-VDIVMPMGFAFSDAKLKRAAMDYGAS--- 57 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +N + A A+ R + ++ A + + ++ G E Sbjct: 58 ADVTRHANFE----------AFDAQRRARGQRLMLMSSHASQRLPEVEFRADDILLMGSE 107 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G+ + L++ + P+ P F SLNI+ + + V E + + + Sbjct: 108 SAGVPDAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156 >gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] Length = 176 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 16 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 75 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 76 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 113 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 114 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 173 Query: 177 EKN 179 E+ Sbjct: 174 ERG 176 >gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii str. Challis substr. CH1] Length = 243 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N++ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T + + + +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT---------------DMQGTPSHKWNTGGKLVLIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRV 242 >gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC 17616] gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC 17616] gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC 17616] Length = 260 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L ++L Q N+G + R+ + P + S K + Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAG 160 Query: 62 ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A ++ + ++ +A+A AR V Q Sbjct: 161 MGAHFLLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSQP 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ ++ ++ P SLN++ A + ++E + Sbjct: 206 VAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium MS024-3C] Length = 246 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + P+ + + + P+ +L+D N G + R + + + + Sbjct: 84 LDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASCTGVDGIIIQKKGTAPVTADTIK 143 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115 +SA A + ++V +LK+A+ L + A T E A + Sbjct: 144 TSAGAAFQVPIIKV-DHLKDAVFHLQACGIQVIAAT--------------EKAKNDLYEV 188 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E G+T + ++NA P+ SLN+S A + ++E + Sbjct: 189 SFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEAVRQR 245 >gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P + ++ + P ++IL N+G R + +V PRD + + + Sbjct: 86 PAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A I + V + A T R N V EA L + +G Sbjct: 144 GAAETIPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC 15579] Length = 257 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N G + R + + + R+ + +SA A + +V + Sbjct: 108 IVILDEIEDPHNFGSILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201] gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 322 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R++ F + L R + A +S+ A + + + L+ Sbjct: 182 PRNLGAIIRSVSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCK 241 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +F+ + + P + + + + ++ G E GL+ + Sbjct: 242 KQGYFVVGL-----DGGGDMSLP--------QLELATEPLVVVVGSEGKGLSRLVTEHCD 288 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 AI+S P+ SLN S AV + ++E + Sbjct: 289 AIVSIPIESAMESLNASMAVGITLYEIARRRASA 322 >gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia intermedia ATCC 29909] Length = 364 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 226 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 283 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 284 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 333 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S SLN+S A +++ E + Sbjct: 334 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 364 >gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola] gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola] Length = 388 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 291 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 292 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 340 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 388 >gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 261 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 +IL D N+G + R N + L +EK +S + ++ Sbjct: 114 VILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYLEKS 173 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + LKE NN+ + + + +I + IIFG E G Sbjct: 174 EIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNG 217 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++++ I +++ P+ SLN++ A +++++ E Sbjct: 218 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256 >gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD] gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD] Length = 302 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82 N G + R + V+ + K S+A + + V+ V + A Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + K V PK +L ++ I+FG E GL E + + Sbjct: 212 SNIRVIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 I P+ S+N++ + +M+ Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290 >gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus deserti VCD115] Length = 241 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 V++L N G + R+ + + R S ++A A + + Sbjct: 94 VVVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQT- 152 Query: 75 SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL I A+ ++Y EAA L + FSG + ++ G E Sbjct: 153 KNLPRLIDQLKAEGVWVYGAAG-------------EAAQELGKVDFSG-KLALVIGAEGE 198 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + ++S PV SLN S A ++++E Sbjct: 199 GMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEATRGR 240 >gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1] gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1] Length = 246 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 19/157 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R+ + + R S ++A A + + NL I Sbjct: 103 PRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQT-KNLPRLIDQL 161 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 AD ++Y A R ++ G E G+ Sbjct: 162 KADGVWVYGAAG--------------EAAQDVTRTDFSGKAALVIGAEGEGMRRLVREKC 207 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++S PV SLN S A ++++E + S Sbjct: 208 DVLVSIPVRGQVQSLNASVAAGILLYEMTRSRGKSGG 244 >gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163] gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163] Length = 383 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 14/151 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V + +A+ Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 302 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R+ +++ + I+ G+E GL++ + Sbjct: 303 F----------RHAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +S SLNIS A +++ E + Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQNQA 383 >gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 329 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 10/156 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + + R + A SA A + RV N Sbjct: 180 IALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLPVARVV-N 238 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI + + R + L A V E F + ++ G E G++ Sbjct: 239 LTKAIE--------SLKERGYYSIDLDGGGTATV-GESGFESDPLIVVLGSEGKGISRLV 289 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++I+S P+ L SLN S A + ++ + Sbjct: 290 REQCDSIVSIPMTSLVESLNASVAAGIALFSVHQAR 325 >gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus DSM 44985] Length = 296 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L N+G V R+ F + + N R + A +SA A + + N Sbjct: 148 VALDHISDPRNLGAVVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQ-APN 206 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L ++ R L + + + + ++ G E GL+ Sbjct: 207 LARSLKQWQ--------ERGLLLVGLDAE--GDTSLDDFTGTEPLALVVGSEGKGLSRLV 256 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P++ SLN+S A +++ E Sbjct: 257 RESCDFVVSIPMSGQVESLNVSVATGVVLGEIARQR 292 >gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1] gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC 27678] gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1] gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 290 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 20/161 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G V R+ + V+ + K S+A + + + + A Sbjct: 140 PGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLP--VLTMGTEAFFAWC 197 Query: 85 HF---------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +Y T +R P+ VL E +IFG E GLT E Sbjct: 198 DERNLAIYAADVYGTDSRP---------PEPLTDVLAEPSTLAGAKTMIFGNEARGLTRE 248 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ I+S P+ SLN+ + +M+ +S V Sbjct: 249 VLDRTDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289 >gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58] gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58] Length = 156 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 23/163 (14%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVID 69 I L P++ N+G + R A + ++ P S+ +A A V Sbjct: 6 RIALYQPEIAGNVGAILRLAACLAVPVD---IIMPTGFAFSDARLKRAAMDYGAAADVTR 62 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 F A R + +L A + + ++ G E Sbjct: 63 HAN-FETFD-------------AVRRAGGRRLLLMSAHASQRLPDVRFKSDDVLLMGSES 108 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ ++ L++ + P+ P F SLNI+ + + V E + + Sbjct: 109 AGVPDDVRDLADIRVRIPMAPGFRSLNIAVSTGIAVAEALRQT 151 >gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP 31758] Length = 395 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 240 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 298 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 299 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 347 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 348 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 395 >gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202] gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda FL6-60] Length = 393 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R +F + ++ P A R++ A+ V +AI Sbjct: 255 PHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAEGGAEHV-----------QAID 301 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F A R + V R + ++ G E GL++ + + Sbjct: 302 AEDFSAALDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLQQGDL 361 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +M+ E Sbjct: 362 SVSIGGTGSVESLNVSVATGIMLAEWWRQ 390 >gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga gingivalis ATCC 33624] Length = 246 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAI--- 81 NIG + R ++ + L P+ G S E +SA A I +V NL + I Sbjct: 108 NIGAIIRTAECTGVSGIIL--PKQGSASIGEDMVKTSAGAIFNIPLCKV-DNLIDTIYYL 164 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + I AT E A L ++ + + I+ G E G++ + + Sbjct: 165 QGSGIKVIGAT---------------EKASSLLYQLNLTEPLAIVMGAEDTGISKGVLKV 209 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ SLN+S A ++E + + Sbjct: 210 LDERAKLPIQGEISSLNVSVACGAFLYEVVRQRLNGQ 246 >gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis SK119] Length = 249 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + + R ++ +S A + +RV + Sbjct: 97 IIILDGLEDPHNLGSIIRTADASGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156 Query: 76 N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +++ A N +++++ + + I+ G E G+ Sbjct: 157 LSKIIDELKDNGYWVAGAEADNATDYRNM--------------AADMPLAIVIGSEGQGM 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + I P+ SLN S A LM++E Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240 >gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501] gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501] Length = 241 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 25/173 (14%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P AP A I L + Q N+G + R + F + L++P P + K SS Sbjct: 89 PDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFR-CLLSPGSVDPYNPKVVRSS 147 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A +F L A+ + R R + L + + Sbjct: 148 MGA--------IFHAPMELDVALD--------SLRTRFARIACLDMQGEPVQSTAFTT-- 189 Query: 119 QNVGIIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E G+ +++ AL + P SLN++ V + +E Sbjct: 190 -FECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241 >gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 254 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 +IL + + N+G + R + + + R ++ +S A + RV Sbjct: 106 VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNI 165 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + + +I+ T + + + V I+ G E G++ Sbjct: 166 NNTIDKLKKANFWIFGTDMKGADYTDW---------------NADGPVAIVIGNEGKGIS 210 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +++ P+ SLN S A L++++ Sbjct: 211 AQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQ 244 >gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa DSM 4126] gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa DSM 4126] Length = 258 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 27/154 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVR------VFSNLK 78 N G +AR+ + +V P G + A +SA A I R L+ Sbjct: 118 NFGAIARSAECAGVD--AIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + L + T E L Q + II G E G++N+ I Sbjct: 176 K--SGLQVVACT---------------EKGKDLIYNTPMAQPLAIILGSEEDGISNDLIR 218 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN+S + + V+E + Sbjct: 219 TADFLAKIPMTGKIASLNVSVSCAIAVFEAVRQR 252 >gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1] gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli AAC00-1] gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 250 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 21/165 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 K +++L N+G R ++ P+D A + ++ A + Sbjct: 100 KPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGAAETMPY 157 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + L E + T+ + A + V ++ G Sbjct: 158 FMVTNLARTLGELKERNIWCIGTS--------------DDAPRTLYEVDLKGPVALVLGA 203 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + ++S P+ SLN+S A + ++E + Sbjct: 204 EGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 248 >gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231] Length = 209 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R + Q V P G P+ SS+ V +V ++ AI L Sbjct: 22 PHNLAAILRTCDAVGVFQAHAVWP-GGVPAVHHHSSAGVGKWV--NVVAHPDVCSAIQAL 78 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 H N P A+ + ++ ++ G E WG++ + I Sbjct: 79 H--------NEGLRVYAAHPVAGAVDYRQADYTV-PCAVLMGAELWGVSEAACQRVDEFI 129 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 + P+ L S+N+S A ++++E + N Sbjct: 130 TIPMFGLGASVNVSVAAAVILYEAQRQRLAKGMYNHPRLAP 170 >gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 300 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 19/170 (11%) Query: 2 TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 TP + ++ + +IIL N+G + R+ F ++ R PSE A Sbjct: 137 TPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGG--IITTRRYSPSESAVL 194 Query: 60 S--SANADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + ++ A I +R+ NL +A+ +H + + T + + + E+ Sbjct: 195 AKSASGALEHIPYIRI-GNLTDALHKIHAWQFQTIGLSSESNNPL-----------EKEI 242 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +I G E GL + + +I + + SLN+S A + ++ Sbjct: 243 KSDKIALILGAEGKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALY 292 >gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor lactoaceticus 6A] Length = 270 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +R Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + +I + ++ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVTTP--YGDIEISKIVPDKRFCVVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C] gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C] Length = 245 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 20/158 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 PV++L +P+ N+G V R F T + D W R+ + + Sbjct: 103 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVVTRGDLDPWHPNVVRAGAG-----LHY 157 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L+ + + + + + FG ER Sbjct: 158 ATTVDRLE---------------LEELPPGPVYALDPEGEDIRALVLPDDALLAFGSERH 202 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ E A ++ ++S P+ P S N++ +V + ++ Sbjct: 203 GISPELRARADHLVSLPMRPQVSSYNLATSVAMTLFHW 240 >gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont of Pentastiridius sp.] Length = 239 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI V R + Q+ + ++ S A ++ +N V+ + ++ AI+ Sbjct: 30 PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSN---HWVKVKTHATIENAISTC 86 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + A + +I Q II G+ER ++ + + L++ I Sbjct: 87 KAV---------GMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALTLADHNI 137 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197 P+ + SLN+S A L+++E +S + P + + + Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLP-EEEQQEWLFE 189 >gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449] gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449] Length = 156 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 13/156 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+LV PQ+ +N G + R + + L L++P ++K + ++V+ Sbjct: 6 IVLVQPQIPQNTGNIGRLCVATD-SVLHLIHPLGFSTTQKELKRA--GLDYWQHLQVYE- 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ADL+ + + K A L Q + FGRE GL + Sbjct: 62 ----WADLNTFW----HSYPPSKRHFFFSTKAQQLYYDADFSQGGFLYFGREDAGLNEDI 113 Query: 137 IALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ S+N++ +V ++E + Sbjct: 114 LHTYQKQVYKLPMKAGVRSINLATSVGAALYEGVRQ 149 >gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 10/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L + EN+G +AR+ + L + +A S ++ + V+ Sbjct: 112 IIMLDNITSSENVGSIARSAAALGVKSYFLPKSSPHPFNRRALRVSMGYAHML-GIHVYK 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ E I A A + + + P + + +I G E G++ + Sbjct: 171 DIFETIE------ALKAAGYRVYAAEVTPDSTPL---SSLHVTSKWVLIMGHEGKGISQD 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + + ++S + S N+ A +M++ + + ++ Sbjct: 222 ILDVCDEVVSIEMQEGIKSFNVGVAASIMMYAFRQRGMAAT 262 >gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR] gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR] Length = 268 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 16/153 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79 Q N+G + R +T + LV + K ++ + +I+ F +++E Sbjct: 124 QDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIIN----FDSIEE 179 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A H ++ K ++ + + V ++ G E G ++ I Sbjct: 180 A---CHLA------KKHGLKLIVTDISKDSSSYLAVDYSEPVALVVGNEARGASSFAIEN 230 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 S+ ++ + SLN+S A ++++E Sbjct: 231 SDYRVAIKMPGKAESLNVSVAAGIILFEAARQR 263 >gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 230 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 25/156 (16%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76 L + Q N+G + R++ N + + + +S+ A I+ V++ SN Sbjct: 91 LDEVQDPHNLGAILRSVEATNYDGVIISKKHQVPLTGVVAKTSSGA---IEHVKLILVSN 147 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + I D + T A + I QN+ II G E +G Sbjct: 148 LYQTILKLQKEDF-LVVGTAG--------------EATASYKEIPKNQNLLIIMGNEGFG 192 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L + ++S P+ SLN+S A L+++E Sbjct: 193 LRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYE 228 >gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua] gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516] gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F] gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1] gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92] gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10] gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516] gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua] gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92] gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F] gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125] gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. IP275] gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. F1991016] gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis YPIII] gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis PB1/+] gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516] gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A] gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004] gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein [Yersinia pestis KIM D27] gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003] gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 388 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 291 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 292 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 340 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 388 >gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1] gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 25/174 (14%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P + L P + +N G + R + + L+ P S+ A + ++ + Sbjct: 2 PDLALFQPNIPQNTGTILRLAACMGVA-VHLIEPAGFPLSDSALRRT--GMDYLERAALI 58 Query: 75 SNLK----EA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +L EA + TT ++ P + + +L +FGR Sbjct: 59 RHLDWPAFEAWRRAEGRRLVLLTT---KSADPYPHFPFQVSDIL------------LFGR 103 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E G+ ++A ++ P+ SLN++ + +++ E + + Sbjct: 104 ESAGVPAAVHEAADARLTIPMVAGLRSLNVAVSAAMVLGEALRQTAAFPPAPAG 157 >gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132] gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans ND132] Length = 196 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 15/171 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ V R+ F + + L WP A SS +A ++ E +A+L Sbjct: 34 PHNVSAVLRSCDAFGVAGVHLYYTDSQWPDL-ALKSSGSATKWVERTEHVDA-AEMVAEL 91 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R ++ + ++ + + II E G + + AL I Sbjct: 92 K------GRGMRVLRTGFSDSARPVMDFDFT---KPTAIILSNEHRGTSPDLAALVPDEI 142 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 P+ + S N+S A +++++ + + ++ EL S Sbjct: 143 YIPMQGMVQSFNVSVAAAIILYQAFTQRDAAGMYDEPSF----SREELESL 189 >gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24] gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24] Length = 328 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 L + + + V I+ G E GL+ + I+S P++ SLN S AV + ++E Sbjct: 264 LPDLSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISR 323 Query: 171 NSIVS 175 Sbjct: 324 QRAAK 328 >gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10] gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar Microtus str. 91001] Length = 393 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 238 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 296 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 297 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 345 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 346 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 393 >gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 217 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 21/128 (16%) Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSG---------------------QNVGIIFGRE 128 T +R + + +E A L ++ G + ++ G E Sbjct: 73 TQGAHRWLRRHRIPYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNE 132 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 R G++ E +A ++ + P++ + SLNIS A L+++E + P Sbjct: 133 REGVSPEVLAEASHSVIIPMHGMVQSLNISVAAALILYEAERQRKAAGYYEEARMPEPER 192 Query: 189 KGELLSFL 196 + L +L Sbjct: 193 RALLEEWL 200 >gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469] Length = 280 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 16/150 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSVRVFSNLKEAI 81 N+G V R+ N+ + L S + S +D +L E + Sbjct: 142 NVGAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKL 201 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + T A LA ++A+ LN+ + G+ + FG E +GL + I + Sbjct: 202 K--AHSFTTCA---------LALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACD 250 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 P++ SLN++ + + WE Sbjct: 251 ITTIIPMSHQVDSLNVAASSAVAFWELFAR 280 >gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a] gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a] Length = 348 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 26/168 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVI-- 68 G V+ L N+G V R+ F LV P R + A +SA A + Sbjct: 197 PGLVVALDGVTDPRNLGAVVRSAAAFGAHG-VLV-PERRAAGITAAAWKTSAGAAARLPV 254 Query: 69 ----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + R + EA F+ A +A ++E + V ++ Sbjct: 255 ARATNLARTLVSYAEA---GLFVVGLAA-------------DADTTIDELEMATDPVVLV 298 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + + P+ SLN A + + E Sbjct: 299 IGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVAAGIALAEIARRR 346 >gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] Length = 297 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + + +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis IP 32953] Length = 390 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q AK V+ L + N+G + R +F + + L +P R++ A+ + Sbjct: 235 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 293 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + R +++ V + + ++ G+E Sbjct: 294 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 342 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT+ + +S SLN+S A +++ E + Sbjct: 343 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 390 >gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 172 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 30/169 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCV------ID 69 I+L +P++ N G +AR L LV P +K + D + ++ Sbjct: 4 IVLFEPEIILNTGNIARMC--VGFDANLHLVRPYGFILDKKRF----HKDFIRASTNHLN 57 Query: 70 SVRVF--SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 +++++ + E I + IY T R K+ + I+ NV + Sbjct: 58 ALKLYEYDDFNEFINKNNISGDEIYFFT---RYGTKTPCDYQYQNII-------QHNVYL 107 Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG+E G+ + + + I P + SLNI+ +V + ++E + Sbjct: 108 VFGKESTGIDHNILKKYPHNWIRIPTSINLRSLNIANSVAMGIYEVVRQ 156 >gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM 20098] Length = 333 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 18/160 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 SA+ I L +N+G V R+ F + L R + A SA A + Sbjct: 176 SARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 235 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV NL +AI L ++ + E F + ++ G Sbjct: 236 CRVV-NLTKAIEALKARGYYVVGLDGGGDKL-------------VGETGFETDPLVVVLG 281 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL+ +AI P++ SLN S A + ++ Sbjct: 282 SEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLY 321 >gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6] Length = 275 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 19/153 (12%) Query: 27 NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLK---EA 80 N+G + R A N L+NP P +A S + ++ E Sbjct: 134 NVGAIFRSAAALNM---DAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEK 190 Query: 81 IADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D+ T A + + + +E++ + I+ G E GL IA Sbjct: 191 GMDILHSLGFKTAA--------MALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIA 242 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P++ SLN++ A + W+ + Sbjct: 243 SCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275 >gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM 12809] Length = 169 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 15/163 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R ++L LV +K + +V + Sbjct: 4 IVLYEPEIPQNTGNIGRFCVGTE-SRLILVGKLGFSLDDKHVKRA--GLDYWQNVNLMQL 60 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L+ + + K A+ V E N+ +IFGRE GL Sbjct: 61 PSLEAFYEEF---------PNDKHPYAFLSKFASRVYTEIPHENDNLMLIFGRETSGLPE 111 Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E +++ P S N+S +V L+ ++ + Sbjct: 112 SVEKDHPDSLFRIPATGKVRSFNLSNSVALVGFDIIRRRGFPG 154 >gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH 8102] Length = 229 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 20/186 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + ++L + N+ + R+ + +V+ + + + + + Sbjct: 15 LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVSLQGRTRTFNSTAQGSQKWVP 74 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ ++ AI L +Y T + ++ Sbjct: 75 LND---HPTIETAIGSLKDRGFRVYGT-----HLGVEAKDYRDCDFT--------GPTAF 118 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G E+WGLT+ L + + P+ + SLN+S A +++E + + + + Sbjct: 119 VLGAEKWGLTDRARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQAAGTAPSQGE 178 Query: 184 NTPATK 189 A Sbjct: 179 GLSADH 184 >gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia bercovieri ATCC 43970] Length = 363 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 12/151 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R +F + + L +P R++ A+ + + + Sbjct: 225 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 282 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R +++ V + + ++ G+E GLT+ + + Sbjct: 283 ----------RKAGYTIVTTSSHKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 332 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 S SLN+S A +++ E + + Sbjct: 333 SIGGTGRVESLNVSVATGILLAEWWRQNSAN 363 >gi|194695936|gb|ACF82052.1| unknown [Zea mays] Length = 209 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 22/164 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P P +EKA ++ A + Sbjct: 47 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLL----PACCDPFNEKAIRAARGASLQLP-- 100 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIF 125 + S DLH + T R + + +A+ L+ + +++ ++ Sbjct: 101 -IVSGT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVL 155 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G E GL+ E + +++ P+ F SLN+S A + ++ Sbjct: 156 GSEGNGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 198 >gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1] gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii RW1] Length = 247 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 27/153 (17%) Query: 15 PVIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWPSEKARSS-SANADCVIDS 70 P+++L N+G V R+ F + + R P A + ++ A ++ Sbjct: 101 PLVVLDQVTDPHNVGAVLRSAAAFDAVGI----VTQDRHAPPESGALARSASGALELVPW 156 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 VRV NL A+ ++ + + R ++ + I+ G Sbjct: 157 VRVV-NLARALDEIAEAGFWRIGLSGHARGT--------------LAQVMGDSRIAIVLG 201 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 E G+ A + + P++P SLNIS Sbjct: 202 AEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234 >gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays] gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays] gi|238006410|gb|ACR34240.1| unknown [Zea mays] Length = 220 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 27/148 (18%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IA 82 N+G +AR+ F + ++ +V RD + S A + R F +L A + Sbjct: 18 HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D R + + A + F ++ +FG E GL+ +E + + Sbjct: 72 D----------ERGCDICGVEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEICDF 120 Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166 + P + SLN++ A +++ Sbjct: 121 FVYIP---QYGGGTASLNVTVAASIVLH 145 >gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1] Length = 280 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 9/181 (4%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P A P + V N+G V R + L + KA +S Sbjct: 107 PLATALAGSPGFVTVCAGISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTG 166 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + R + + +A TT + L EAA +L V Sbjct: 167 SVFHLPLAR-DRDAQGVVAACRSAGLTTLVADGRGELDLHAPEAAPILA------GPVAW 219 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 I G E G + A ++ + P++ SLN++ A + ++ + ++ + + Sbjct: 220 ILGSEAHGPGPDVFAAADHRVRVPIHGRAESLNLATAAAICLYATVGARAGAAPRPPSAR 279 Query: 184 N 184 + Sbjct: 280 D 280 >gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74] gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74] Length = 270 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 7/166 (4%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + V +L + N G V R + L + + K +S + Sbjct: 107 DVLAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSLF 166 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + ++EA+A L + A + +R G +FG Sbjct: 167 HLPVATGVP-IEEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFG 219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 220 NEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 265 >gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V + +A+ Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 302 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R+ +++ + + I+ G+E GL++ + Sbjct: 303 F----------RSAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLNIS A +++ E Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQ 380 >gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 333 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 18/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L+ +EKA ++ A + + S Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLP---IVS 233 Query: 76 ----NLKEAIADLHFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +L + ++ + + L+ L + + S +++ ++ G Sbjct: 234 GNWCDLHALVTRYGMKMFAGHPESSSDGSARTHALS-----KELADSLVS-ESLCLVLGS 287 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL+ E + + ++S P+ +F SLN+S A + ++ Sbjct: 288 EGNGLSEETVQACD-LVSIPMEGIFESLNVSVAGGIFLFMLQ 328 >gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 293 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 32/170 (18%) Query: 3 PYAPQLQNSAKGPVII-----LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56 P+ P + + ++ LVD N+G + R++ LV PR P + Sbjct: 128 PHLPSVAEVVRDTSVVVIIEDLVD--HT-NVGAIFRSVAALG-ADAVLVTPRCADPLYRR 183 Query: 57 ARSSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110 A S + R+ ++A F+ A + E AI Sbjct: 184 AIRVSMGTVFQVPWTRIDPWPESIDTFQDA----GFVVA-----------GMTLGEGAIT 228 Query: 111 LNERIFSG-QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 L+E + + + ++FG E GLT + ++ P+ SLN++ Sbjct: 229 LDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNVAA 278 >gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14] gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14] Length = 286 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 16/175 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 TP+A + + V +L + N G V R + L + + KA +S Sbjct: 112 TPFA-DILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRAS 170 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117 + + +++A+A L ++ +LA A + Sbjct: 171 VGSLFHLPVAVGVP-VEQAVAGL----------KDAGVRILAADGAGEHDLDDELDDNTM 219 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G +FG E WGL + AL++A++ P++ + SLN++ A + ++ Sbjct: 220 GGPTAWVFGNEAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLYASARAQ 274 >gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str. 870] gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str. Tulya] gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str. C68] gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 297 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + + +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter versatilis Ellin345] Length = 285 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF--SNLKE 79 Q N+G + R+ F T L+ + P + K S+ + + V+V + L++ Sbjct: 145 QDPGNLGTILRSAEAFGATG-VLIGDKTASPWNPKVIRGSSGSVFRLPVVKVEWPAALEQ 203 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A I AT++ L E F+G + ++ G E G+ + +A Sbjct: 204 LRAKGVQILATSS-------------HKGEPLPEVDFTGPTI-VLIGGEGAGVPRDVLAS 249 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P +P SLN A ++++E Sbjct: 250 VDGTLAIPHSPKVESLNAGIAASIVMYEAARQR 282 >gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 220 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 23/166 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + G +IL Q N+G + R F +T + L + ++ A Sbjct: 63 EEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGAL 122 Query: 66 CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + ++F + L+ + ++I +T+ R ++ Sbjct: 123 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTEDWSKLPDLN 165 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+ G E G+ + S+ ++ P+ SLN++ A +++ Sbjct: 166 ELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211 >gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A] gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 297 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + + +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter hongkongensis HLHK9] Length = 252 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 15/163 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R + ++ P+D + + A + ++V + Sbjct: 100 ILDGITDPHNLGACLRVADAMGVH--AVLAPKDRSAGLNATVSKVACGAAETVPYIQV-T 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + DL ++ + + +++ + G E G+ Sbjct: 157 NLARTLRDL----------KDRGIWIAGTDMDGQSDLYHFEAPESLAWVMGSEGEGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++S P+ SLN+S A +++ E +++E+ Sbjct: 207 TREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQHTLAAER 249 >gi|255635868|gb|ACU18281.1| unknown [Glycine max] Length = 324 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNP-RDGWPSEKARSSSANADCVIDSV 71 +++L Q N+G + R+ F + L P +EKA +S A + V Sbjct: 170 ILVLDGIQDPGNLGTLLRSAVAFRWDGVFLL----PGCCDPFNEKALRASRGASFQLPVV 225 Query: 72 R-VFSNLKEAIADLH-FIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGR 127 +++L+ + A + K V L+P S + ++ G Sbjct: 226 SGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFC------DSLSDTPLCLVLGS 279 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL+ + + ++S + + SLN+S A + ++ Sbjct: 280 EGSGLSEKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320 >gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 317 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 10/169 (5%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + ++ L N+G V R++ F +V P +A +A Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 210 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A S + A A + A + + V + + + G + I Sbjct: 211 AWKT--SAGTAARTPVARA-TNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVI 267 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL+ + ++ P+ SLN A ++++E + Sbjct: 268 VVGSEGKGLSRLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRR 316 >gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium chloromethanicum CM4] Length = 269 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 14/175 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P L A P ++ LV +N+G + R F + L KA Sbjct: 107 PSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A + S R S A+ DL A L P + + + Sbjct: 167 SAGAALTVPSARAPS--GAALLDL-------AERHALTPLALTP--SGSETLDALEPPAR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL + + + + P F SLN++ A + + + Sbjct: 216 TLLLLGTEGPGLPESLMVRARR-VRIAMAPGFDSLNVATAGAIALHHLAGRRLAG 269 >gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 152 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 14/157 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + N+G + R F + + ++ P S++A + +D ++ Sbjct: 2 RIALFQPDIAGNVGTILRTAACFGVG-VDIIEPCGFAFSDRALKRAG-----MDYAKIAP 55 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + +AR + VL I L E F ++ ++FG E G + Sbjct: 56 P----VRHNDWNSFLSARPE---RRVLLTTAGDIPLPEMTFQPDDI-LLFGSESAGAPDF 107 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ F SLNI+ + + + E + + Sbjct: 108 VHQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144 >gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens PA1] Length = 269 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 14/175 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P L A P ++ LV +N+G + R F + L KA Sbjct: 107 PPPESLIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A + R S A+ DL A L P + + Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDALEPPAR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL +A + + + P F SLN++ A + + + Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHLARLRLAG 269 >gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 262 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 20/155 (12%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R NL + + NP+ + SS +F+ Sbjct: 122 PEKPGNIGALLRTADAANLDAVIIANPKSDLYNPNIVRSSVG--------CLFTT----- 168 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGLTNEEI 137 TT K A + N + Q+ ++ G E GLT E Sbjct: 169 ---QIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTEATGLTQEWR 225 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I P+ S+N+S A ++++E Sbjct: 226 NNATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260 >gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium profundum SS9] gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 245 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ S ++IL N+G R + + R + A + A V Sbjct: 90 LEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEV 149 Query: 68 IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + VRV +NL A+ D +I T A + I Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYHSKLTGPLAI 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + +I P+ SLN+S A + ++E + Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme DSM 15981] Length = 279 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 12/170 (7%) Query: 4 YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P +N +++++ Q N+G + RA +T L + + K S+ Sbjct: 115 SVPVGKNPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTM 174 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + V +L A+A + +A R + ++ N+G Sbjct: 175 GSILRVPFV-YVDDLSAALAQIK-----SAGVRLFAAHL-----KGTNNYDQEDYTGNIG 223 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT E A+++ I P+ SLN + A ++++E Sbjct: 224 FLIGNEAAGLTEETAAMADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273 >gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae ACS-120-V-Col10a] Length = 253 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 18/148 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82 N+G + R + + R + S A + RV + + EA+ Sbjct: 114 PHNLGSILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALK 173 Query: 83 D-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + +++ T + + + + ++ G E G++ + Sbjct: 174 EKGVWVFGT---------------DMEGQDYWDMDASLPIAVVIGNEEKGISPRVKKALD 218 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169 +++ P+ SLN S A L+++E Sbjct: 219 GVLTIPMRGHVQSLNASVAAALVMYEVY 246 >gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM 14484] Length = 248 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 14/165 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +L +N+G + R + L L R ++ +S+ A + RV S+ Sbjct: 96 VLDHLTDPQNVGNLLRTCEVLGGVGAL-LPKDRSCPINQTVIKASSGAVFHLLLSRV-SS 153 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ ++ + + V+ E ++ ++ G E G++ Sbjct: 154 LRRSLENFKRVGG---------WIVVV--ERGGKDIRQVDIPLPCALVLGSEGEGVSKSV 202 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + +++ I+S P+ SLN+S A + +WE ++ + + Sbjct: 203 MEIADLIVSIPMGGKITSLNVSSAGAIAIWETIKKHLPPHSHPQE 247 >gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 30/178 (16%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKA 57 P A ++ +A+ ++ +V+P N+G + R A N L+ P +A Sbjct: 123 PSAEKVCKNARRIAVLENVVNPT---NVGAIFRSAAALNM---DAVLLTSACSDPLYRRA 176 Query: 58 RSSSANADCVIDSVRVFS-NLK------EAIADLHF-IYATTARNRNNFKSVLAPKEAAI 109 S + + + N+ + + + F A RN + Sbjct: 177 IRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRNDSVRID--------- 227 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +E++ + + + II G E GL E +A + + P++ SLN++ A + WE Sbjct: 228 --DEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAFWE 283 >gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1] Length = 171 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 12/152 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R F + ++ D P + + ++ A +V E D+H Sbjct: 30 NIGSLFRICDAFGVEKIIFCG--DNIPVFGRRMTKTSRATE-----KVVP--FEITTDIH 80 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + + ++ L E + ++ FS + + ++ G E +G+ E I S+ ++ Sbjct: 81 AVV-SKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENFGVNPETIYESDVVM 139 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + S+N+ QA ++++E +V+ Sbjct: 140 HIDMFGQNSSMNVVQATNIVLYEITRQHLVAK 171 >gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium hominis ATCC 15826] Length = 243 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 11/163 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K +++L Q N+G R+ + + + N R + + A ++ R Sbjct: 92 KPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIPNSRAADVTPVVEKVACGATEILPLFR 151 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V SNL+ + R + V+ A + +I G E G+ Sbjct: 152 V-SNLRREVE----------RMQRQGIWVVGGAGGAAQSLYATDLTVPLAVIVGNEGEGI 200 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ P+ SLN+S A +M++E + S Sbjct: 201 RHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQRLFS 243 >gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii 2AN] Length = 248 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75 +L N+G R ++ P+D A + ++ A + V + Sbjct: 104 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGAAETMPYFMVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L E + T+ + A ++ V ++ G E G+ Sbjct: 162 LARTLGELKERNIWCIGTS--------------DDAPKTIYQVDLKGPVALVLGAEGDGM 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 208 RQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEALRQR 247 >gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus sanguinis SK408] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTTG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus RM3267] Length = 226 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 18/150 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL NIG + R + +V E +S+ A D V Sbjct: 87 ILYGLSDVGNIGAIVRTAHALGCGGVVIVA--KNLAMEGVLRASSGAAYETDIALVEDGL 144 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + + F TA N V + V ++ G E GL + Sbjct: 145 SLLNELKQVGFKIYATASGGKNAHEVKFDR--------------KVALVMGSEGEGLHKK 190 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + S+ I+ + + SLN+S A ++ Sbjct: 191 VLTKSDEIVGIKMKNDWDSLNVSAAFAILC 220 >gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 247 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++LV + Q N+G R+ T + + + + R +SA A Sbjct: 91 LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +I V +NL + DL +IY A ++ N+ Sbjct: 151 DLIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL + ++ P+ SLN+S A + ++E + Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246 >gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa W1219] Length = 237 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 51/166 (30%), Gaps = 18/166 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + G +++L N+G + R + R + S A Sbjct: 81 SIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGVIFKKDRSVGLNATVAKVSVGAIQ 140 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + V + ++ +++ T ++ + + Sbjct: 141 TVKCASVTNLSQTIEWLKKRGYWVVGTAMEGKDYR---------------SLKYDYPTVL 185 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + G E G+++ + + + P+ SLN S + ++++E Sbjct: 186 VIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIY 231 >gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662] Length = 246 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +G++ G E G++ + S P+N SLN S A ++ +E + ++ Sbjct: 190 GPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQRLLK 246 >gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK36] gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative [Streptococcus sanguinis SK36] gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT] Length = 260 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 19/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N+G + R+ + + L + D W S KA A ++ V ++L+ Sbjct: 122 QDPGNLGSMLRSAAAAGVEVVYLSLGCADAW-SPKALRGGQGAQFILPIVER-ADLENVT 179 Query: 82 ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ATT + ++ L P + G E GL+ I + Sbjct: 180 RGFAGQTLATTLMGESLYEMDLQP---------------PTAFMIGNEGTGLSETLIKAA 224 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + +S P+ SLN + A + ++E V Sbjct: 225 SRQVSIPMAGQVESLNAAAATAICLFERSRQKAV 258 >gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 246 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +G++ G E G++ + S P+N SLN S A ++ +E + ++ Sbjct: 190 GPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQRLLK 246 >gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50] gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50] Length = 257 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P L ++ Q N+G + R + ++ L S K S A Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162 Query: 66 CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + +L EA+ D+ + T AR+ + + + L Sbjct: 163 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLP---------------ACC 204 Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172 +FG E G+ + + + P + SLN+ A + ++E Sbjct: 205 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256 >gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK150] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM 20603] Length = 282 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + +VN +A S + R +NL E + LH Sbjct: 148 NLGAIIRSCAALGVDG-IIVNHTSADPLYRRAIRVSMGTVFQVPWTR-ANNLIEVLDLLH 205 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIALSNAII 144 + TTA LA + AI L++ V +FG E GL++ +A + ++ Sbjct: 206 EAHYTTA--------ALALSDNAITLDQFNAENHDKVAFLFGNEGHGLSDRTLATVSRVV 257 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ L+ + Sbjct: 258 TIPMAGDVDSLNVAATSALVFY 279 >gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+ +N G + R + + R +SA A ++ V + Sbjct: 105 LVE--DPQNFGSICRIADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEI----- 157 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 ++ + T + + ++ + A + Q +G+I G E G+ IA Sbjct: 158 ---NNIKYAIKT---LKEHNITIYGAEAQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIA 211 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + +I P+ SLN+S A L+ +E + Sbjct: 212 LCDKVIKIPMRGTINSLNVSVASALITFEVLRQR 245 >gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M] gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M] Length = 279 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + +A S ++ R E +A Sbjct: 139 ENLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVA--- 195 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R L PK A L E Q V ++ G E GLT + +S+ Sbjct: 196 ------LKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLR 249 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 250 VRIPMSRGTDSLNVATAAALAFYE 273 >gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI] gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI] Length = 261 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L + N+G + R + + R S SSA A + RV Sbjct: 112 ILLDEVHDPHNLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANI 171 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E + A P + + R+ V ++ G E GL Sbjct: 172 ARTIELLKGKGLWVAGA-----------DPDGREVYWDARL--DGPVALVIGGEGKGLGR 218 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P++ SLN S A L+ +E + Sbjct: 219 LVKEKCDVLVRLPMSGRVNSLNASVAAALLSYEVVRQR 256 >gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383] Length = 260 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 18/169 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 L ++L Q N+G + R+ + P + S K S A Sbjct: 105 QPLPARVTQSSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163 Query: 65 DCVIDSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++ + +++ A+A+ V V Sbjct: 164 HFLLS---IHEDVEAGALAE------------RLDVPVALTDSHGAQAVYDCDLSGPVAW 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica PV-4] gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica PV-4] Length = 246 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 15/158 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V PRD + + A V+ +V Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVT- 157 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V A EA L + G + I G E GL Sbjct: 158 ---------NLARTMKALQEKGVWIVGAAGEAEHDLYKADLKG-PIAIAMGAEDKGLRRL 207 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +++ S P+ SLN+S A + ++E + + Sbjct: 208 TRESCDSLASIPMAGSVSSLNVSVATGICLFEAVRQRL 245 >gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC 700633] Length = 282 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R + + + R + +S A + VRV + Sbjct: 137 ILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKASTGAIEHVPVVRVTN 196 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ +++ T + + ++ + + I+ G E G+ Sbjct: 197 LTQTIEQLKERGVWVFGTDMKGTDY-------RQW--------NTKGPIAIVMGNEGKGV 241 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +I+ P+ SLN S A LM++E + Sbjct: 242 SRIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFRSR 281 >gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK187] gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes SK137] gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA1] gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL074PA1] gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA1] gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL110PA2] gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA1] gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA1] gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA1] gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA2] gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL007PA1] gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL056PA1] gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL086PA1] gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA4] gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA1] gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL050PA3] gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL067PA1] gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA1] gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA1] gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL082PA1] gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL037PA1] gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA1] gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL045PA1] gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA1] gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL053PA2] gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL078PA1] gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL038PA1] gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL059PA2] gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA1] gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL030PA2] gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA2] gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL097PA1] gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA1] gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL043PA2] gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA3] gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL083PA2] gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL092PA1] gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA1] gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL025PA2] gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL099PA1] Length = 318 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A Q G V+ L N+G + R+ F + + + R + A +SA A Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I + +NL +A+ F A LA + + + F G V I+ Sbjct: 217 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 266 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL + + S P++ SLN S A + ++E Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317 >gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEA 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+T + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T + +G + +I G E Sbjct: 154 VTNLSQTLDKLKHAGFWIFGT--------------DMNGTPSTKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 243 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P L ++ + P ++IL N+G R + +V PRD + + + Sbjct: 86 PALLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + V + A T R N V EA L + +G Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas tunicata D2] gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas tunicata D2] Length = 175 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 26/152 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF-- 74 LV+P+ N+G V RA V+ G ++AR + + V + + + Sbjct: 14 LVNPKSPTNVGAVMRAA---GCYD---VDSVFYSGVRFDRARKFATDTKNVSEHIPLIGI 67 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++LK+A+ + + A R N +FG E L Sbjct: 68 ADLKQAVPEGAKVIA-------------VELIEGATALTRYQHPDNAFYVFGPEDGSLGK 114 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + ++ P +N++ V ++++ Sbjct: 115 DILKWCDDVVYIPT---IGCMNLAATVNVVLY 143 >gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501] Length = 273 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62 L+ K P+I LV P+ N+G + R +L +V G + SS Sbjct: 110 QDLELEGKNPLI-LVAQAPEKPGNLGALLRTADAASL-DAVIVADLKGDLYNPNVIRSSV 167 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + ++ +EA++ L AR+ +V A V ++ Sbjct: 168 GCLFTVPVAQ--ASTEEALSYLK------ARD----IAVYAASLGGSVRYDQADYLGASA 215 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E GLT + A + P+ S+N+S A ++++E Sbjct: 216 IAVGTEATGLTEAWTRQAEACVEIPMAGAIDSMNVSVAAAVLLFEARRQR 265 >gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045] gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045] Length = 266 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 20/163 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + PV++L +P+ N G V R F T + D W R + + Sbjct: 124 PRRAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 178 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + A + + + + R+ + FG ER Sbjct: 179 ATAVERMDVA---------------DLPEGPVYALDPEGEDIRRVRLPDEALLAFGSERS 223 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL+ E A ++ +++ P+ P S N++ +V + ++ ++ Sbjct: 224 GLSPELRARADRLVALPMRPQVSSYNLATSVGMALFHWSAGAV 266 >gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49] Length = 260 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 A L ++L Q N+G + R+ + P + S K S Sbjct: 104 AQPLPERVTQSSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162 Query: 64 ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + ++ +A+A AR V V Sbjct: 163 AHFLLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSGPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 208 WVFGNEGAGVSAFWRDAAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 519 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 18/193 (9%) Query: 1 MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 ++ Q + + PVI++ N+G + R L + P+ A Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAGALGAHGLVI--PQRRAVGVTAAV 378 Query: 60 SSANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A ++S RV NL A+ +L F A EA ++E F Sbjct: 379 AKVAAGA-LESFPVARVV-NLNPALEEL---------KDAGFWIYGAAGEAKQSIHETSF 427 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 SG V ++ G E GL+ + +IS P+ SLN S A ++++E + Sbjct: 428 SG-PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLT 486 Query: 177 EKNVKEQNTPATK 189 + AT Sbjct: 487 HHLEGIADNGATA 499 >gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens] Length = 249 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62 L +K PV+IL+ N+G R+ + L+ P+D S + Sbjct: 88 TLLERSKKPVLILILDGITDPHNLGACLRSADATGV-DFVLI-PKDKSASITPVVSKVAC 145 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A I VRV +NL A+ +I+ A L + Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N+ ++ G E GL + + S P+ SLN+S A + ++E + E Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249 >gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL087PA2] gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL046PA2] gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA1] gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA2] gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL063PA1] gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL036PA3] gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA2] gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA2] gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA2] gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL005PA3] gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL027PA2] gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL002PA3] gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL072PA1] gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL096PA3] gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL013PA2] gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium acnes HL020PA1] gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266] Length = 318 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A Q G V+ L N+G + R+ F + + + R + A +SA A Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I + +NL +A+ F A LA + + + F G V I+ Sbjct: 217 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 266 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL + + S P++ SLN S A + ++E Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317 >gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 248 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +S A + RV Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +KE +++ T + R+ V ++ G E G+++ Sbjct: 163 QTVKELKNRGVWLFGTDMKGRD----YRTWDAHGA-----------VALVIGNEGKGISS 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 LLKKNCDEMLTIPMVGHVQSLNASVAAGLLIYQ 240 >gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270] Length = 261 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 19/152 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFSNLKE 79 N G + R F + + +N D + + K ++ A +ID ++ +KE Sbjct: 126 SDPGNFGTIIRTANAFGINDILTINCVDKY-NSKVLRATMGAIFRTNIID-CKI-EKIKE 182 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + +TT + F L E F G+N+ ++ G E G++ E + + Sbjct: 183 LQSGGYRLISTTLSKNSKF------------LEEFTFDGKNI-VVMGNEANGISAEMLKI 229 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 SN + ++ SLN+S A +++++ +N Sbjct: 230 SNNHLKIDMDNSMESLNVSIAAAIIMYKIFKN 261 >gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946] gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946] Length = 274 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 35/180 (19%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-------- 57 + + S +++ V + N+G V R+ ++ LV S + Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAG-AEVVLVAGGVDLYSPQVIRNSTGVV 166 Query: 58 ---RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 R+ +A+ V+D ++ NL + ATT P A+ Sbjct: 167 FSLRTLAASESEVLDWIKQH-NLP--------LVATT------------PHAEALYWEAN 205 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + V I G E GL + + + P+ SLN+S + L+++E + ++ Sbjct: 206 LRP--PVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLL 263 >gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1] Length = 261 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 12/150 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + LV S +A ++ + + R Sbjct: 120 VALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPLSRC--- 176 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA A + SV+ +A + + I+ G E+ GLT E Sbjct: 177 -GEA--------EFAAWRKGWPGSVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEM 227 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL + + P+ SLN+S A +M++ Sbjct: 228 AALPDLNVKIPMRGRADSLNLSVATGIMIY 257 >gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10] Length = 263 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V N G + R + L + K +SA + + +L Sbjct: 112 VAVQISEPGNAGTLIRLADAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVAA-APDL 170 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNE 135 +EA+A + R +LA V +R + +FG E GL + Sbjct: 171 REAVAAV----------REAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSA 220 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 A ++ + P+ SLN++ A + +++ Sbjct: 221 VAAAADHRVCIPMAGGAESLNVASAAAICLYQSARA 256 >gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus vestibularis F0396] Length = 247 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R +T + + R + +S A I Sbjct: 98 ENPLILILDGLNDPHNFGSILRTADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T ++ +G + +I G E Sbjct: 158 RVTNLSQTLDKLKESGFWVFGT--------------DMDGTPSHKWNTAG-KLALIIGNE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P++ SLN S A ++++E N + Sbjct: 203 GKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247 >gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1] gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1] Length = 302 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82 N G + R + V+ + K S+A + + V+ V + A Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNAKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + K V PK +L ++ I+FG E GL E + + Sbjct: 212 ANIRVIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 I P+ S+N++ + +M+ Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290 >gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 273 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 25/166 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----------AD 65 ++IL + N+G + R+ N+ + L ++ S D Sbjct: 122 IVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGD 181 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + LKE + + A TAR+ + +E + S + II Sbjct: 182 DTWPADGMHR-LKE-LGYKNVAMALTARS-------------VSIDDEALMSEDKLAIIL 226 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL E I + + P+ SLN++ A + W+ + Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272 >gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium wasabiae WPP163] Length = 243 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P + ++ + P ++IL N+G R + +V PRD + + + Sbjct: 86 PAMLDNIETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + V + A T R N V EA L + +G Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1] gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1] Length = 233 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 +IL + + N+G + R + + + R ++ +S A + RV + Sbjct: 85 VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNV 144 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + +I+ T + + + V I+ G E G++ Sbjct: 145 NNTIDKLKKANFWIFGTDMKGTDYTDW---------------NADGPVAIVIGNEGKGIS 189 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +++ P+ SLN S A L++++ Sbjct: 190 AQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQ 223 >gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53] Length = 178 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L P++ N + R+ + +L ++ P K +A + D V Sbjct: 4 IVLYQPEISPNTANIIRSCYALG-AKLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEVHD 62 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + + + Y T R KS + +N+ +FGRE G+ Sbjct: 63 SYLDFYNKYKNANVFYIT----RYGLKSY-----DKVDFKNEYSKDKNIFFMFGRESTGI 113 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + + P+ S+N++ V ++ +E M Sbjct: 114 DKEILKNNIDKCLRIPMVSKMRSINLANTVCIVGFEFMRQ 153 >gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM 9941] gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM 9941] Length = 223 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 35/180 (19%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFN--------LTQLRLVNPRDGWPSEK 56 +P+ + V++L Q N+G V R+ F L + K Sbjct: 69 SPEELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGAGVALSRGCADLY---------NPK 119 Query: 57 ARSSSANADCVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 S+ + + R L E F A A P Sbjct: 120 TVRSTMGSLFRVPVARELDPLAFLELARGAGFGLA-AATPGGGEPPGSMP---------- 168 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G N+ + G E GL+ + +S P PSLN + A ++++E + Sbjct: 169 ---GGNLVVAVGSEGAGLSPGVVRACGVRVSIPSRA--PSLNAAVAASILLYEAYRRVLT 223 >gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1] gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72] Length = 242 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNISQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor hydrothermalis 108] Length = 270 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +R Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + +I + ++ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCVVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950] Length = 268 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 17/165 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73 + V+ N G + R + L V+P +G + A+A + V Sbjct: 117 VAVEIGEPGNAGTLIRLADAMGAAGVILGGRSVDPYNG------KCLRASAGSIFCVPVV 170 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +A+A + + R + G+ +FG E GL Sbjct: 171 VA--PDALAAVDAV-----RAAGLQALATTVDGERRLDEAGELLGRPTAWLFGPESHGLP 223 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +E + ++ + P++ SLN++ A + +++ + + Sbjct: 224 SEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARALKLPTRP 268 >gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7] Length = 240 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 21/149 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F++ + L P+D P+E + + +A + + +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I T + F +++++I ++FG E G+ + + Sbjct: 166 KHGFWIIGLTGSANDYF--------TNKLISDKI------VLVFGSEDKGIRRLVVETCD 211 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + P++ SLN+S A ++ + Sbjct: 212 YLAKIPISQRVESLNVSNAASIIFHSLHK 240 >gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 246 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 23/171 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L++ A+ +++L N+G R + +V P+D + R + A Sbjct: 91 LESEAQPLILVLDGVTDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 V+ +++ +NL + L +I T K++ + Sbjct: 149 EVVPLIQI-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYDVDLKG-----------ST 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++ P+ SL +S A + ++E + Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIVRQR 244 >gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 258 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62 L +K PV+IL+ N+G R+ + +V P+D S + Sbjct: 97 TLLEKSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSASITPVVSKVAC 154 Query: 63 NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A I VRV +NL A+ +I+ A L + Sbjct: 155 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAENLLYAMDCS 199 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 N+ ++ G E GL + + S P+ SLN+S A + ++E + E Sbjct: 200 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 258 >gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 158 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R F L + ++ P S++ + ++ + + Sbjct: 5 IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDISDRNLKRA--GMDYLERASLERH 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L D T R + +L A I +N ++FGRE G+ + Sbjct: 62 L-----DWQNFIDTMQR---FNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ P+ P SLN++ +V + E + Sbjct: 114 YKAADCTLTIPMLPHARSLNLAISVAMTTGEALRQ 148 >gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford] Length = 244 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 21/147 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F++ + L P+D P+E + +A + S+ +NL+ + L Sbjct: 113 NIGAIIRSAAAFDINAIIL--PKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLK 170 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I T + F ++++ S + ++FG E G+ + Sbjct: 171 KHGFWIIGLTGSAHDYF-------------SDKLISD-KMALVFGSEDKGIRRLIEETCD 216 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 + P++ SLN+S A ++ Sbjct: 217 YLAKIPISKRVESLNVSNAASIIFHSL 243 >gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545] Length = 411 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I+FG E G T E +A ++ + P+ SLN+S A L++ E + Sbjct: 198 EKLAIVFGTESVGCTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFRLCPEAIGA 257 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236 + + + + +E R +++K+ L + R EV Sbjct: 258 MDEAERASLREDWFSRLAAQRIRTPDEA---RAAKERKRALTKVRHKLNRNTPRTPEV 312 >gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK678] Length = 242 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum DSM 5476] Length = 259 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 14/153 (9%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L Q NIG + R + L++ S K S+ + + + +L Sbjct: 119 LCSTQDPGNIGTMIRTADALGIDG-VLLHNTCDIYSPKVVRSTMGSLFRMRFA-LCPDLL 176 Query: 79 EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A L+ T A A E A+ + FSG V + G E GL + Sbjct: 177 GLTASLNACGVDTCA----------AVVEDALPVTRASFSGPRV-LYIGNEGNGLPDSIA 225 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I+ P+ SLN + A +++WE + Sbjct: 226 FACARRITIPMRGNAESLNAASAAAILMWEMTK 258 >gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM 18228] Length = 282 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 17/167 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+++ NIG + R+ + + L + +A S + ++ Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPW-TWAD 180 Query: 76 NLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E + +L F A T R+ +L + ++ G E GL Sbjct: 181 RPLECLKELGFKTAALALTDRSVPLDYPLL-------------KQESRLALVMGTEGDGL 227 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 I ++ + P+ SLN++ A + WE VS + Sbjct: 228 PQTAIDGADYVARIPMYHGVDSLNVAAASAVAFWELRLPGNVSGDAQ 274 >gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax SaI-1] gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax] Length = 214 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 19/144 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R+ F ++++ +V+ + + I ++ FS++KE Sbjct: 13 NIGSIVRSCVAFRVSKIFVVSRKKNQVN---FFGHMGTCEYI-TIEYFSSMKE------- 61 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 T R+ +A+ + R F ++ +FG E G+ +E ++ + ++ Sbjct: 62 -LKTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKVVYI 120 Query: 147 PVNPLFP----SLNISQAVLLMVW 166 P + SLN+S + +++ Sbjct: 121 P---QYGNGTCSLNVSVSCAIILH 141 >gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 21/160 (13%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ + + + + + +++ N Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 AI+DL +Y TT + + QN + G E+WGL Sbjct: 81 TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +NE ++ + I P+ + SLN+S A ++++E + Sbjct: 128 SNELKSMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167 >gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana ATCC 700345] Length = 246 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V P+D + + A V+ +V + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSVGLTPVVSKVACGAAEVVPLYQVTN 158 Query: 76 NLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A T R+ + A EA L + +G + I G E GL Sbjct: 159 ------------LARTMRSLQEKGIWIIGAAGEADCELYQASLTG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++S P+ SLN+S A + ++E + + Sbjct: 206 RLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQRLA 246 >gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli BSR3] Length = 260 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 30/176 (17%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-- 62 A +L ++L Q N+G + R+ ++Q A + S+ Sbjct: 104 AAELPGRVARTAMVLDGVQDAGNVGSILRSAAAAGVSQ-------VFCMRGTAYAWSSKV 156 Query: 63 -----NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A ++D + +++ EA+ R + L + Sbjct: 157 LRSGMGAHFLLD---IHEDVEAEAL-----------IPRLDVPVALT-DSHGAQAIDDCD 201 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V +FG E G++ + ++ P SLN++ A + ++E Sbjct: 202 LTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 257 >gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 251 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + +S A + RV +NL + Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARV-NNLVQITK 168 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +I+ T + + K + ++ G E G++ + Sbjct: 169 MLKKRGYWIFGTAMKGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 213 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN S A ++++ Sbjct: 214 QMDQTLTIPMVGHVQSLNASVATGVLLY 241 >gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str. Eklund 17B] Length = 260 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 11/149 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L +EK S+ + + + + Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMP--IYYDD-----N 172 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I + ++ FK ++ E++ + G+ + + G E G++NE + L++ Sbjct: 173 EFSLI---KSLKKDGFKLIVTSLESSKDFFKEDLKGKTI-LTVGNEGNGVSNEVLDLADR 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ SLN++ A ++++E + Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKIRQ 257 >gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 297 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 33/184 (17%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 L+ I L + N+G V R + L+ S + ++ + Sbjct: 136 SLKPKGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195 Query: 65 ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ + FS L I T + +++++ Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------IVGTHLKGAVDYRTI-------------P 233 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + V ++ G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293 Query: 176 SEKN 179 E+ Sbjct: 294 DERG 297 >gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999] Length = 235 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 18 ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVF 74 +L++ N+ + R + + +V W + +S A + Sbjct: 22 VLMEEVHKPHNVAALIRTCDAVGIHEAHVV-----WNQNYSLRVGTSLGAHHWVGMHE-H 75 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 S++++AIA L + ++ V + II G+E++G T Sbjct: 76 SDIEKAIAHL---------KGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATK 126 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 IAL++ I P+ + SLN+S A ++++E + + +L Sbjct: 127 NAIALADKEIVVPMVGMTVSLNVSVAAAVILYEAQRQREAAGMYETMTLPEAECQRQL 184 >gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583] gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis HH22] gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309B] gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0309A] Length = 282 Score = 55.8 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 137 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 195 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 196 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 240 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 241 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 279 >gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13] Length = 249 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + SS A I VRV + Sbjct: 101 ILDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLA 160 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I+ T V ++ +G+I G E G+ Sbjct: 161 RTVDELKERGLWIFGT--------------DAKGTVDYTKMDGSLPLGLIIGSEGKGMAR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++S P+ SLN S A L+++E + + E Sbjct: 207 LLKEKCDFLVSLPMVGKVTSLNASVAASLLMYEVFRKRLSAGE 249 >gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 240 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K P+ + L + N+G + R + + + R+ + S A + Sbjct: 88 KMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVIIGKHRNVGLTPTVAKVSTGAIDTVKVA 147 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +NL ++I L + F V E + E + V I+ G E +G Sbjct: 148 -MVTNLAQSIKYL---------KKQGFWIVGTDFENSRDYREGQYDVPLV-IVVGSEGFG 196 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++ + + P+ + SLN S A ++++E Sbjct: 197 ISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237 >gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 170 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 22/176 (12%) Query: 4 YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 ++N+ I+L+ + + EN+GM+ R F L ++ V + KA+ +S Sbjct: 5 EHEHIENTKHDLQIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRAS 64 Query: 62 ANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 N + V+D + FS L E A K + + N RI Sbjct: 65 RNTYKTMDYEFVVDVKKQFSQLLE--------VGYHAIALEITK------FSEPIHNLRI 110 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + V +I G ER G++ E + P+ S+N+ A+ + +++ EN Sbjct: 111 NNQKKVVLIIGSERQGISEELLQFCQNHYHIPMFGGNSSINVVNALSIGLFKITEN 166 >gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512] Length = 286 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R + Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 192 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + + AT +++++ K + V ++ G E+ G Sbjct: 193 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + ++A+ P SLN++ A +M++E + + +E Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284 >gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 262 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 15/177 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP +P++ ++ Q N+G + R + ++ L S K S Sbjct: 98 VTPPSPEMPAEVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRS 157 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + ++ TA ++A Sbjct: 158 GQGAHFALA---IHEHID-----------LTALLPRLRVPLVATALDGARNLYEGRLPAR 203 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSS 176 +FG E G+ + ++ + P + SLN+ A + ++E ++ ++ Sbjct: 204 CAWVFGHEGQGVDPVLLDAASHKVCIPHDMAAVESLNVGAAAAICLFEQRRQALANA 260 >gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase) [Deinococcus deserti VCD115] Length = 270 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 31/180 (17%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P P+ N A +++L + N+G + R+ Q LV R P S Sbjct: 104 APRLPEPGNDA--VLVVLHGLEKPGNVGAILRSADAAG-AQGVLVLGRGADPYGPNVIRS 160 Query: 62 ANADCVIDSVRVFSNLKE--AIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + + L E A+ + T R + + L Sbjct: 161 SQGSVF---TMPVAVLDEGTALEWLSTRGFTTVACTPDAPRTYWDAPLT----------- 206 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENS 172 V ++ G E GL E ++ +S P++ SLN++ A L+++EC Sbjct: 207 ----GRVALLLGTEHAGLP-ESWRHTDHSVSIPMHEGSGADSLNVATAAALVLFECARQR 261 >gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325] Length = 170 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 22/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EA 80 Q N+G + R F+ + L +K S+ ++ ID F N+ + Sbjct: 32 QDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQGSNFHID---CFDNIDILDV 88 Query: 81 I---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 I D YAT+ + L + G+ V +IFG E G++ E + Sbjct: 89 IPKMEDFDL-YATSLKGDRY-------------LEQIDSVGEKVAVIFGNEGSGVSEEIL 134 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 N ++ + SLN++ A +++ Sbjct: 135 DKVNNLLKINMTGQAESLNVAVAAGIVMH 163 >gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 274 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 18/177 (10%) Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 P P + + K + +L + NIG + R+ + L+ P P +A Sbjct: 108 PALPDIVDVCKNARRIAVLENVVNPTNIGAIFRSAAALGM-DAVLLTPGCSNPLYRRAIR 166 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYA----TTA-RNRNNFKSVLAPKEAAIVLNER 114 S I + + + A T A R + + P A Sbjct: 167 VSMGTVFQIPWTFFDEKTEWKTEGIRSLKAMGFKTAAMALREDSFDIDDPHLMAE----- 221 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ G E GL +E IA + + P+ SLN++ A + W+ + Sbjct: 222 ----EKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDSLNVAAASAVAFWQLGKR 274 >gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 134 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 20/135 (14%) Query: 42 QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFK 99 L L+ P ++ + + V V +L +A L ++A T N Sbjct: 8 HLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDSLDACLATLPGARVFAFTGHCSNMLF 67 Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI---ISFPVNPLFPSLN 156 V ++FG E GLT+E + + + + P+ S+N Sbjct: 68 DVRF--------------APGDVLLFGTEPTGLTDEAMNH-DRVTQKVRIPMLEGRRSMN 112 Query: 157 ISQAVLLMVWECMEN 171 +S A + +E Sbjct: 113 LSNAAAVATYEAWRQ 127 >gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 247 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++LV + Q N+G R+ T + + + + R +SA A Sbjct: 91 LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSASVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +I V +NL + DL +IY A ++ N+ Sbjct: 151 DLIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL + ++ P+ SLN+S A + ++E + Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246 >gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34] Length = 155 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 32/158 (20%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + R + + + Sbjct: 10 CIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGSRYDH-----------------AAQFCT 52 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSG----QNVGIIFGRE 128 + K+A D+ I + K + P ++ + + IFG E Sbjct: 53 DTKKASLDIPLIG-----VEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE 107 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L E I P N S+N++ AV ++++ Sbjct: 108 DGTLKKEITDFCRETIYVPTN---GSMNLAAAVNVILY 142 >gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM 12563] Length = 162 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 28/167 (16%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVN-PRDGWPSEKARSSSANADCVIDSV 71 I L P++ N G + R L +L +V+ P S++ R + + + Sbjct: 11 NIAIALYRPEIPANTGNIGRLC--VGLNIELHIVSKPSFIISSKEVRRA---GLDYWEHL 65 Query: 72 RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + N + + NN + ++ + + N ++FGRE Sbjct: 66 VLIKHENENTFLEYCN----------NNDRRIIPITKFGKNRYDEFNYSNNDILLFGRES 115 Query: 130 WGL-----TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL N+ + I P++ S+N+S + +E + Sbjct: 116 TGLRESLWEND----LDNSIYIPMSDNIRSINLSNTAAITAYEAYRH 158 >gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + + I+ G E GL +E IA + + P+ SLN++ A + WE Sbjct: 217 ELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFWELGR 273 >gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 278 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 7/150 (4%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNL 77 V+ N G + R + KA +SA + + R +++ Sbjct: 123 VETGEPGNAGTLIRVSDALGAAGVVFAGQSVDPLGGKAVRASAGSIFHLPVAREAGVADV 182 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + + F TA + + + E E+ Q +FG E GL + + Sbjct: 183 IDRLHEEGFTVMATAMDGDVSLEEASTSEPG----EKPILAQPTAWLFGNEAHGLGHWQ- 237 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L++ IS P+ S+N++ A + +++ Sbjct: 238 DLADLRISIPMRGRAESMNLATAASICLYQ 267 >gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756] gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756] Length = 152 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + +N+G R F + L ++ P +K+ +A + ++ Sbjct: 2 RIALFQPGIPQNVGAAIRLSACFGVG-LDVIEPCSFPLDDKSLKRAALDYGPLAHLKRHD 60 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + A R + + +L A + F+ + ++FG E G E Sbjct: 61 SWGAFLK---------APERVDGRLLLFTTRGATPFHRFEFAPGDT-LLFGNESRGAPEE 110 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 A + I P+ P S+N++ + + E + + E Sbjct: 111 VHAAVHGRIIIPIRPETRSMNLATTAAMALGEALRQTGGFPE 152 >gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34] gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34] Length = 262 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 14/170 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + IIL Q N+G + R+ + L S K + A+ Sbjct: 107 LPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFH 166 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V L+ + + +LA A Q VG + G Sbjct: 167 LNIVEHC-TLE--MLESRLAV-----------PLLATSSHADAAVFDTDLRQPVGWVIGN 212 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G++ E +A + + P SLN++ A + ++E + S Sbjct: 213 EGGGVSPEWMAHVSRTVGIPQPGGLESLNVAAATAVCLFEAVRQRRASGG 262 >gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405] Length = 242 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPTHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 18/174 (10%) Query: 11 SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + + P++++ + Q N+G V R + R SSA A + Sbjct: 137 AGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHGAVVPVHRSAPLGATVFKSSAGALVHLP 196 Query: 70 SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V + ++++ ++ A P+ +R Q V ++ G Sbjct: 197 VAEVTNLARSVEQLKERGVWVVAA------------DPE--GAEPYDRWDWTQPVAVVLG 242 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 E G+ + ++ P+ SLN+S A ++++E + Sbjct: 243 SEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQRRQQGLPSP 296 >gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 270 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 21/161 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +++ Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGS---LFHMQIMR 182 Query: 76 NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +E + D F V P + +I + ++ G E Sbjct: 183 EAEEGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCVVIGNESE 229 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+++ ++ I P+ SLN + A ++++E + Sbjct: 230 GVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652] gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652] Length = 286 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R + Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 192 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + + AT +++++ K + V ++ G E+ G Sbjct: 193 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + ++A+ P SLN++ A +M++E + + +E Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284 >gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio nitroreducens DSM 19672] gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 18/169 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +L ++ I L Q N G + RA F + + + SSA A Sbjct: 75 ELGQNSGNICI-LDHIQDPHNFGAIVRAGHCFGVRNFIIAKDNQSPVTPVVVKSSAGAAI 133 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V + +++E ++IYA I + + Sbjct: 134 YSRFYEVVNINRSIEELKEKGYWIYA--------------ADMNGETKLGDIRPNEPYVV 179 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E G+ + ++ + P+ + SLN SQ+ + + NS Sbjct: 180 IIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFYHFYINS 228 >gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 264 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 22/172 (12%) Query: 3 PYAPQLQ-NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSS 60 P A L + ++IL Q N+G + R F + L + D + + RS Sbjct: 103 PQAKSLDIDQLTKGLLILDQVQDPGNLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSM 162 Query: 61 -----SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + N V D V V L+EA + TT L + A + Sbjct: 163 QGSHFAVNTYEV-DLVEVIPQLQEA----GYFITTT---------ELNNQAKASNAFDLK 208 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ ++ G E G++ L++A + P++ SLN++ A +++++ Sbjct: 209 SKGKW-ALVMGNEGNGVSQTTSQLADAALYIPMSGSAESLNVAVAGAIVMYQ 259 >gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 256 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 29/164 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72 ++IL + Q N+G + R F+ L+ + + K S+S A ++ Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILK--- 161 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127 NL + + LH T + A + + + Q IIFG Sbjct: 162 -VENLSQILDKLHQNNFVSIGT------------FLSKKAAKIKDFVIENEQKYAIIFGN 208 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G++ + I P+ F SLNI+ A ++++E Sbjct: 209 ESSGISAALEKIIQKQIYIPI--AFESLNIANATAILLYEFSTQ 250 >gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1] Length = 256 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 29/164 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72 ++IL + Q N+G + R F+ L+ + + K S+S A ++ Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILK--- 161 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127 NL + + LH T + A + + + Q IIFG Sbjct: 162 -VENLSQILDKLHQNNFVSIGT------------FLSKKAAKIKDFVIENEQKYAIIFGN 208 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G++ + I P+ F SLNI+ A ++++E Sbjct: 209 ESSGISAALEKIIQKQIYIPI--AFESLNIANATAILLYEFSTQ 250 >gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 243 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P + ++ + P ++IL N+G R + +V PRD + + + Sbjct: 86 PAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + V + A T R N V EA L + +G Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 249 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +IIL + + N+G + R N + + R + +SA A +V Sbjct: 103 IIILDNIEDPHNLGAIIRT-ANLAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVT 161 Query: 75 S---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +++ + D +A + ++ +G++ G E G Sbjct: 162 NIANTIED-LKDKGLWFACA--------------DMGGTTMYQLNLKGPIGLVIGNEGSG 206 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + I S P+ SLN S A ++ +E + + Sbjct: 207 VSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFEVVRQRL 248 >gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 164 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + ++FG E G+ Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISD-KIALVFGSEDKGMRRLVEETC 210 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P++ SLN+S A ++ + Sbjct: 211 DYLAKIPISKRVESLNVSNAASIIFHSLHK 240 >gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7] gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7] Length = 244 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 57/169 (33%), Gaps = 17/169 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + +++L + N+G + R + + + R + S A Sbjct: 87 TIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAID 146 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +V + L++ ++ + + + ++ I Sbjct: 147 HVKVAQVTNLTRTLEDLKKRSFWVVGC---DLDKSQDYRQVDYNMPLV-----------I 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E +G++ + + P+ SLN S A +++++ + Sbjct: 193 VIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYNSR 241 >gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1] Length = 218 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + FG E GL++E + ++ + P+ S NIS AV ++++ + Sbjct: 127 NKMAVFFGTELTGLSSEVLEAADLCVKIPMYGFTQSYNISVAVAIVMYSLL 177 >gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis] gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis] Length = 229 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 97 NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 153 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + ++FG E G+ Sbjct: 154 KKHGFWIIGLTGSANDYF-------------TDKLISD-KIALVFGSEDKGMRRLVEETC 199 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P++ SLN+S A ++ + Sbjct: 200 DYLAKIPISKRVESLNVSNAASIIFHSLHK 229 >gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 255 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 19/148 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIAD 83 N+G + R+ F + + L + + A + ++ V++F S+ + Sbjct: 113 NLGAIIRSAAFFGIENIVLTKEDKQASITTSAYRVAQGG---MEFVKIFKVSSTAWFLRQ 169 Query: 84 LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 T R + L I + I+ G E G++ E L Sbjct: 170 CRGRLTCIGTDLRAHHEI----------ADLGRLIEKDEACVIVLGNEERGISEEAKKLC 219 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 +I + SLN++QA L Sbjct: 220 VHLIKIKGSGNVESLNVAQAATLFCHSL 247 >gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum WM1] Length = 259 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 19/167 (11%) Query: 11 SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +A GP +L + Q N+G + RA +T + + + K S+ + + Sbjct: 105 AAPGPAFLMVLENIQDPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRV 164 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V +LK A +YA RNN+ E+ + G + Sbjct: 165 PFVYTEDLPASLKALKAGGVRLYAAHLNGRNNY--------------EKEDYTVDTGFLV 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GLT+E AL++A + P+ SLN + A ++++E Sbjct: 211 GNEANGLTDETAALADACVKIPMKGKVESLNAAVAASVLMFEAARQR 257 >gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22] gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22] Length = 313 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%) Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + P+I+ L N+G V R++ F LV P +A +A A Sbjct: 159 DEGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVLV------PERRAAGMTAGAWKT- 210 Query: 69 DSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 S + +A + A A + V + + E G V I+ G Sbjct: 211 -SAGTAARTP--VARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGS 267 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ + + P+ SLN A ++++E Sbjct: 268 EGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312 >gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A + R Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVLIAR 159 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + A + + T + SG + +I G E Sbjct: 160 VTNLSQTLDKLKAKGFWTFGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+N SLN S A ++++E N + Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248 >gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG] gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG] Length = 285 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98] gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX1322] gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1] gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2] gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200] gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3] gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5] gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96] gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704] gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1] gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188] gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98] gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis R712] gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis S613] gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis PC1.1] gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76] gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TUSoD Ef11] gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0411] gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0109] gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0860] gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2134] gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4248] gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 512] gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0102] gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0635] gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis DAPTO 516] gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0470] gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4000] gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0017] gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0027] gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2141] gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX4244] gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0012] gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0031] gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0043] gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0312] gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0645] gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1302] gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1341] gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1342] gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1346] gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0630] gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Enterococcus faecalis 62] gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF] gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX1467] Length = 285 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC 49540] Length = 288 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 14/163 (8%) Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 P I +L NIG + R+ + + + + +A S + Sbjct: 129 PKAHPRIAVLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVP 188 Query: 70 SVRVFSNL--KEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + L E I+ LH + TA R+N ++ P ++ + II Sbjct: 189 WTYVDAKLWQAEGISLLHRLGYKTAAMALRHNTVNIDDP---------QLDQVDKLAIIL 239 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E GL + IA S+ I P+ P SLN++ A L WE Sbjct: 240 GSEGPGLREKTIAQSDFTIKIPMAPGVDSLNVAAASALAFWEL 282 >gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG 19424] gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 260 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 14/165 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + IIL Q N+G + R+ + L S K + A+ Sbjct: 107 LPARIEQDCIILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFH 166 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V L EA+A +LA A V + G Sbjct: 167 LNIVEHC-TL-EALAP------------RLAIPLLATSSHAEAAVFDTDLRGPVAWVVGN 212 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G++ +A + P SLN++ A + ++E + Sbjct: 213 EGAGVSEGWMAHVTRKVGIPQPGGMESLNVAAATAICLFEAVRQR 257 >gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC 7061] Length = 249 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 19/164 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + + N+G + R + + R + +S A I +V +NL Sbjct: 101 ILDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKV-TNL 159 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ ++ ++ T A + +++ + + ++ G E G+ Sbjct: 160 SRALDEMKERGIWVAGTDASAKQDYR--------------QFDGTMPLALVIGSEGKGIG 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +I P+ SLN S A L+++E E Sbjct: 206 RLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYEVYRKRYPLGE 249 >gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1] gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1] Length = 432 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E GLT+ +A ++++ P+ P SLN+ A +++++ + S Sbjct: 373 PLAIVVGNETDGLTDATLAACSSLVRIPMAPGQDSLNVGVAAGVLLYDVVRRS 425 >gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis TX0104] gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6] gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11] gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX2137] Length = 285 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii ATCC 33406] Length = 268 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEA--IAD 83 N G VAR+ + + +V R + A +SA A I RV + + Sbjct: 128 NFGAVARSAECLGVDAM-IVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLIDTVKYLKQ 186 Query: 84 LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 I A + E A + I+ G E G++ + + ++A Sbjct: 187 CGLRIIACS--------------EKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADA 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ P++ SLN+S A +++ E + K Sbjct: 233 HVTIPMSGHINSLNVSVATGMILSEVTRQRLKQQSK 268 >gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia goodfellowii F0264] Length = 244 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 11/170 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +T + ++ K V+IL Q N G + R+ F + + + + + +E S Sbjct: 86 LTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRNNVKVTETVVKS 145 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S A +D ++V + I+D T + + V + L + Sbjct: 146 STGAIEHVDIIKVTN-----ISD------TIDKFKKYGYKVYGAEADGENLYYEESYPKK 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V ++ G E G+ + + + + SLN+S A +++ E + Sbjct: 195 VCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIILAEMSK 244 >gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 266 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 33/162 (20%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V N G + R + S KA +SA + + Sbjct: 123 VAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVP-------- 174 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIF 125 AR+R+ + + K + L G+ +F Sbjct: 175 -------------VARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLF 221 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E GL E + L++ ++ P+ SLN++ A + +WE Sbjct: 222 GNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263 >gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 287 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 40/185 (21%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-----VIDSVR 72 +L + NIG V R+ + + L +A S ++DS Sbjct: 125 VLENVMNPTNIGAVFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRC 184 Query: 73 V-------------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 F A+ D + A ++ E Sbjct: 185 SWPQPGISRLRGMGFKTAAMALGDDSICI-----------------DDAGLMAED----- 222 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + +I G E GL+ E IA + + P++ SLN++ A +M W+ S Sbjct: 223 KLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDSLNVAAASAVMFWQIGRAFHEDSGSY 282 Query: 180 VKEQN 184 N Sbjct: 283 PPGNN 287 >gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 241 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSS 60 T A + P++IL N+G +AR F + + + R P E+A Sbjct: 75 TTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIAATRKQARPCEEAYRE 134 Query: 61 SANADCVIDSVRVFSNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + ++D +R+ N+ + HF+ + L P+ I + + Sbjct: 135 ARGGLDMVD-LRLVDNVPSFLKGARKTHFVIGL-----DIEGPPL-PELMGICPEDELE- 186 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151 + V I+ G E GL + ++ P + Sbjct: 187 -KPVAIVIGNEETGLHESSKQECSVLVGIPGSGA 219 >gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 248 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 11/153 (7%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V N G + R + L + K +SA + I + + Sbjct: 104 VGISEPGNAGTLIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIP----VLSAPD 159 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+A + + ++ VLA V E +FG E GL + L Sbjct: 160 AVAAVT-------KLKDAGLQVLATVLDGPVSLEDADLSVPTAWLFGPEAHGLPADVAGL 212 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + A + P+ SLN++ A + +++ + Sbjct: 213 ATAGVRIPMPGNAESLNVASAAAICLYQSARSQ 245 >gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus plutonius ATCC 35311] Length = 279 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 134 ILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTGAVEYIPVARV-TNL 192 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + IA L +I+ T I +G + +I G E G++ Sbjct: 193 SQIIAKLKEQQFWIFGT--------------DMTGIDYRNWDATGA-LALIIGNEGKGIS 237 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ +I+ P++ SLN A L+++E Sbjct: 238 AGLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYR 274 >gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656] Length = 302 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S + + I+ G E GL + I + + P++ SLN++ A + WE + Sbjct: 247 LHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM 20098] Length = 290 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------F 74 N+G + R+ ++ LV P G P +A S + R+ F Sbjct: 135 PTNVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGDDKHYWPF 193 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+E + A + + L + + + + + +IFG E GL Sbjct: 194 KGLEELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHID--KLALIFGTEGDGLNR 251 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 IA ++ + P++ SLN++ + + + Sbjct: 252 HTIARADLTVKIPMSHDVDSLNVAASSAVAFYATRR 287 >gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Taeniopygia guttata] Length = 198 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L Q N+G + R+ + + R+V R + +SA A V D V+ Sbjct: 39 VLEHIQDPMNLGALLRSAYFLGVD--RVVATRGNSCPLTPVVSKASAGAMEVFD---VYG 93 Query: 76 N------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 LK A+ + T +R + ++ ++ + V ++ G E Sbjct: 94 TDDLQGFLKAKSAEGWEVVGTVSRPEDV-------EDVPVISCSEFQWDKPVIVVIGSEG 146 Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVW 166 GL+ E +++ P ++P SLN+S A +++ Sbjct: 147 EGLSLETQQQCQRMLAIPPGRALHPGLDSLNVSVAAGILLH 187 >gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly] gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1] gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly] gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1] Length = 218 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 15/127 (11%) Query: 96 NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155 N +K V + + E + + FG E GL++ + ++ + P+ S Sbjct: 104 NGYKIVATSLDNEAISLEDFPIDTKMAVFFGTELTGLSHTILQNADLHLKIPMYGFTQSY 163 Query: 156 NISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215 N+S AV ++ + + SS + L+ E + Y+R + K+ Sbjct: 164 NLSVAVAIVFYSLINRLRSSS---------------IDYLLNEDEKLNLKLEYYRKIIKR 208 Query: 216 KKMLDDL 222 K+++ L Sbjct: 209 YKVIEKL 215 >gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens] Length = 164 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 13/145 (8%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P N R + F + + +V E ++ A + L+E Sbjct: 30 RPSNPANAWACLRTIDAFGVQDVDVVK----DTLEARMHAAMGAQKWL-------TLREH 78 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A + A A + L P I + + ++FG E G++ + A + Sbjct: 79 DAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAA--EPYALVFGNEETGISEDLRARA 136 Query: 141 NAIISFPVNPLFPSLNISQAVLLMV 165 + + P+ L SLN+S +V + Sbjct: 137 DVRVHLPMRGLAESLNLSVSVGACL 161 >gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1] Length = 302 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S + + I+ G E GL + I + + P++ SLN++ A + WE + Sbjct: 247 LHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 19/161 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 IL N+G R + +V P+D + + A V+ +V + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSVGLTPVVSKVACGAAEVVPLYQVTN 158 Query: 76 NLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A T R+ + A EA L + +G + I G E GL Sbjct: 159 ------------LARTMRSLQEKGIWIIGAAGEADCELYQASLTG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++S P+ SLN+S A + ++E + + Sbjct: 206 RLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQRLA 246 >gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase, TrmH family [Campylobacter lari RM2100] Length = 226 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 18/152 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRV 73 ++IL + NIG + R+ + + LV + R+SS A ++ + + Sbjct: 85 IVILYNISDVGNIGAIVRSAYALGADGIILVA-KSVAMDGVIRASSGAALDMKIVLNDDI 143 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S + E +IYA+ + + I + +I G E +G+ Sbjct: 144 LSMINELKQKGFYIYASASGGSDIH---------------TIKTKDKKVLIMGSEGFGIA 188 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + ++ F SLN+S A ++ Sbjct: 189 PKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220 >gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE] Length = 279 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 219 GGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273 >gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36] gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36] Length = 250 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 23/164 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFS 75 IL N+G R+ + +V P+D + R + A + + V + Sbjct: 104 ILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSVQLTSVVRKVACGAAETVPLIAVTN 161 Query: 76 ---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++E + D +I T + + PK + I G E G Sbjct: 162 LARTMRE-LQDRRIWIVGTAG---EATQDLYQPKLTGPL-----------AIAMGAEEKG 206 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 L + +IS P+ SLN+S A + ++E + Sbjct: 207 LRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRQAK 250 >gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 272 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 17/147 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N G V R L +V + KA +SA + + + +EA+ Sbjct: 131 PGNAGTVIRCADAAG-ADLVIVTSESVDVYNPKAVRASAGSLFHVPVAVGV-SAQEAVDM 188 Query: 84 LHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVG---IIFGRERWGLTNEEIAL 139 L R VLA A L++ + +G+ +FG E WGL +AL Sbjct: 189 L----------RAAELRVLAADGGGAADLDDELDAGRLAAPTCWMFGNEAWGLPEALLAL 238 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + P++ SLN++ A + ++ Sbjct: 239 ADEAVRVPIHGRAESLNLATAAAVCLY 265 >gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158] gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158] Length = 260 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 18/170 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63 A L ++L Q N+G + R+ + P + S K S Sbjct: 104 AQPLPERVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162 Query: 64 ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + ++ + +A + Q V Sbjct: 163 AHFLLS---IHEDVAPDVLAG------------RLDVPIALTDSHGAQAIYDCDLSQPVA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G++ + ++ P SLN++ A + ++E + Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257 >gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 258 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 26/176 (14%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P++ K P ++IL N G + R + + + + A +SA A Sbjct: 99 PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 158 Query: 65 DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + +V++ NL + + + AT E A L I Sbjct: 159 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDIDF 200 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G++ E + S+ I P+ SLN+S A +++E + + Sbjct: 201 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256 >gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM] Length = 264 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 26/176 (14%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P++ K P ++IL N G + R + + + + A +SA A Sbjct: 105 PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 164 Query: 65 DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + +V++ NL + + + AT E A L I Sbjct: 165 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDIDF 206 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G++ E + S+ I P+ SLN+S A +++E + + Sbjct: 207 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 262 >gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C] gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C] Length = 287 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G +FG E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 221 GGPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPGG 280 >gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 297 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L N+G V R+ F + + N R + A +SA A + + N Sbjct: 149 VALDHISDPRNLGAVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQ-APN 207 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + + +R L + + + + ++ G E GL+ Sbjct: 208 LTRTLKEWQ--------DRGLLLVGLDAE--GDTSLDDFVGTEPLALVVGSEGKGLSRLV 257 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P++ SLN+S A +++ E Sbjct: 258 RESCDVVVSIPMSGQVESLNVSVATGVVLGEIARQR 293 >gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 325 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 10/160 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S +I+L N+G R+ F + + R + SA A ++ Sbjct: 171 EPSHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIV 230 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + NL A+ L A + L + + Q + ++ G E Sbjct: 231 PVAK-ARNLTHALQQLQAEGAFAIGLDGGGD---------VDLPDLTLADQPLVVVTGSE 280 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ + I+S P++ SLN + A + +++ Sbjct: 281 GKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320 >gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 176 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 17/170 (10%) Query: 7 QLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + + + K P+I++ V N+G V R F + + L P + ++ Sbjct: 16 EFKQADKLPLIVVLDDVRSMH--NVGSVFRTGDAFRIEAVYLCGITSTPPMAEIHKTALG 73 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNV 121 A+ + + F EA+ L ++ + + + + Sbjct: 74 AEDSVTW-KYFDTALEAVETL---------KAEGYEVYSVEQAHGSTMLQNFTPINNKKY 123 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E G+ E I S+ + P S+N+S +++W +N Sbjct: 124 AVVLGNEVKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIWHFAKN 173 >gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus salivarius SK126] Length = 247 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V+IL N G + R +T + + R + +S A I R Sbjct: 99 NPLVLILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 158 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +++ T ++ +G V +I G E Sbjct: 159 VTNLSQTLDKLKEAGFWVFGT--------------DMDGTPSHKWNTAG-KVALIIGNEG 203 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P++ SLN S A ++++E N + Sbjct: 204 KGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247 >gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 243 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 P + ++ + P ++IL N+G R + +V PRD + + + Sbjct: 86 PAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + V + A T R N V EA L + +G Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242 >gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002] gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002] Length = 262 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 15/127 (11%) Query: 46 VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105 VNP + K +S A + V E + R R ++A Sbjct: 145 VNP----SNPKVLRASVGA-WFQTTPVVIPTFAEQLQ----------RYRAQGVQIVATL 189 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 A + Q I+ G E GL+ +L+N + P+ P SLN++ A LM+ Sbjct: 190 PQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLANETVQIPMGPGVESLNVAIACALML 249 Query: 166 WECMENS 172 +E Sbjct: 250 YEARRQR 256 >gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa] Length = 1628 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 27/184 (14%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 A +L S V++ L+D N+G + R F + L V+ ++ + Sbjct: 1459 DRAARLGKSISRLVVVASLID--KPTNLGGLCRTCEVFGASALV-VSSLQCIRDKQFQHL 1515 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113 S +A+ + V V L+E A+ + I TAR+ + + P Sbjct: 1516 SVSAEQWLPLVEVKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQ-FCFP--------- 1565 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G ER G+ I + + P + SLN+ + L++WE + Sbjct: 1566 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 1620 Query: 174 VSSE 177 + Sbjct: 1621 LRPG 1624 >gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 382 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 14/151 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V + +A+ Sbjct: 245 PHNLGGIMRSCAHFGVKG-ILVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 301 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R + V L++ + V I+ G+E GL++ + Sbjct: 302 F---------RRAGYTIVTTSSHKGTALSQATLPAKTV-IVLGQEGDGLSDSAWQQGDVK 351 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +S SLNIS A +++ E + Sbjct: 352 VSIGGTGKVESLNISVATGILLSEWWRQNQA 382 >gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 289 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 21/171 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + RA +F + ++ L +P P +A+ S+ ++ R S+ +E Sbjct: 129 PFNVGSIFRAAESFGVRKIFL-SPGSADPRHPRAQRSAMGCVDIVPWCR--SSFEE---- 181 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA- 142 + ++A + L+E F + ++ G E G++ + ++ Sbjct: 182 --------MQTHTTSNKIVALETGGCPLHEFHFPAGGI-LVIGSEELGVSPALMEQASRS 232 Query: 143 --IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 +S SLN+S A +++ + E V+ T + GE Sbjct: 233 GGAVSIETGGRKGSLNVSVATGIVLHAWFSQ-FRAVEPGVRRHETTISDGE 282 >gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 11/155 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R+ + L + R ++A A + V V Sbjct: 104 PHNLGACLRSAEAAGANAVVLPKDHACPVNATVRKAAAGAASRLPIVVVT---------- 153 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + + EA+ L E G + ++ G E GL + + Sbjct: 154 NLVRSMVGLQEYGYWIAGLAGEASQDLYEADLRG-PLALVLGSEEKGLRRLVREHCDFLW 212 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 P+ SLN+S A L ++E ++ + Sbjct: 213 HIPMCGAVESLNVSVAGALALFEARRQRRTQAKPD 247 >gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii ATCC 33806] Length = 266 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 33/162 (20%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V N G + R + S KA +SA + + Sbjct: 123 VAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVP-------- 174 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIF 125 AR+R+ + + K + L G+ +F Sbjct: 175 -------------VARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLF 221 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G E GL E + L++ ++ P+ SLN++ A + +WE Sbjct: 222 GNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263 >gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus S110] Length = 248 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 21/162 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75 +L N+G R ++ P+D A + ++ A + V + Sbjct: 103 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 160 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L E + T+ + A + + + ++ G E G+ Sbjct: 161 LARTLNELKERSIWCVGTS--------------DDAPGTLYQSDLKRPLALVLGAEGEGM 206 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++S P+ SLN+S A + ++E M Sbjct: 207 RQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQRSA 248 >gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM 6725] Length = 270 Score = 55.5 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +R Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + +I + I+ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCIVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270 >gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P] gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P] Length = 225 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 22/168 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+N + ++L D N V R F + + + + + ++ +R + + Sbjct: 26 LENRTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENK--YNTKVSRHVAKGSQKW 83 Query: 68 IDSVRV---FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ R N KE + L I AT+ P + VL + F+ + Sbjct: 84 LNQYRYRSDGDNTKECLDGLKEKGYQIIATS------------PHNNSCVLQDFDFT-KK 130 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +FG E G+++ I ++ + P+ SLNIS A +++ E Sbjct: 131 TAFVFGVEAEGVSDCVIENADGFLKIPMVGFTESLNISVAAAIILQEV 178 >gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia R551-3] gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas maltophilia R551-3] Length = 278 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 29/180 (16%) Query: 3 PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57 P A L++ +GP + L V N G + R+ +F + L L A Sbjct: 116 PLAQWLEDLGEGPALALWLDGVG--NPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAA 173 Query: 58 RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 R + A+ V D+ + + L+ A + F++ L + Sbjct: 174 RVAEGGAESVPLVQLPDNAQAMAQLRAA--GFGLAATLVEGGEDVFRASLPAR------- 224 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E G+ + + +S P + SLN++ A +++ + Sbjct: 225 --------LVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWASRR 276 >gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3] gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1] Length = 255 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 15/144 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82 NIG + R + L + K + + + + + +++ Sbjct: 122 PGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLLKTIEQFKE 181 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +YA+ VL + + E+ + + +I G E G+++E + L++ Sbjct: 182 NYIPVYAS----------VLDDEAKELPDFEKT---KELALIIGNEANGVSDEAVNLADE 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN + A +M++ Sbjct: 229 KLFIPIKGQAESLNAAIAAGIMIY 252 >gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 276 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 13/164 (7%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 V++L Q N G + RA F T + + + K +SA + + Sbjct: 125 RPALVVVLDGLQDPGNAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRASAGSLFRVPF- 183 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERW 130 + + A TA ++ + P A+ + + G++ G E Sbjct: 184 ---------LHGVDAAVACTALAQHQVELFAGVPAGASSRTLAAVDLARPCGLVIGNEAH 234 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G++ A ++ +S P SLN + A ++++E ++ Sbjct: 235 GVSRGLRAAAHD-VSIPTVG-VESLNAAMAASILLYEARRQRML 276 >gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 20/162 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 + IL + + N+G + R + + R + +SA A +V Sbjct: 100 IFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 159 Query: 74 -FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++E L F+ A + R+ +G++ G E G Sbjct: 160 LVKTMEELKEKGLWFVCA----------------DMGGETMYRLNLTGPIGLVIGNEGTG 203 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + + S P+ SLN S A ++ +E + + Sbjct: 204 VGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245 >gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8] Length = 276 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 18/165 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR- 72 ++L D Q N G + R+ F+++++ V P + KA +SA + + VR Sbjct: 117 VCLVLEDIQDPGNFGTLIRSAEAFSVSRVY-VTPGTVNQWNPKAMRASAGSVFRMPVVRG 175 Query: 73 VFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 S +K A+ A+ +YA AR+ P A +L ++ G E G Sbjct: 176 PLSEIKSALGAEGVRLYAAVARSSGA-----TPVMQAKLLA-------PCALMIGNEGAG 223 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L+ + L++ + P + SLN + A +++E ++ + Sbjct: 224 LSMTALELADEQVHIPCSVE--SLNAAIAGSTLMYESFRQNLHEA 266 >gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens AM1] Length = 269 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 14/168 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P L SA P ++ LV +N+G + R F + L KA Sbjct: 107 PSPEALIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A + R S A+ DL A L P + + Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDALEPPAR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ G E GL +A + + + P F SLN++ A + + Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHL 262 >gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa HTCC2155] Length = 197 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 27/176 (15%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L++ V+IL Q N+G R + + + P+D ++ S S Sbjct: 41 LESKKTPFVLILDGVQDPHNLGACIRTANGAGVDAVII--PKDNAAPITDTVMSVSCGGA 98 Query: 66 ------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 V++ R LK+ +I T+ + A Sbjct: 99 SNTAIFRVVNIARTMEKLKKI---GVWIAGTS--------------DKADQDLYNSDLKG 141 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V ++ G E G+ + +++ P+ P LN+S A + ++E + S Sbjct: 142 PVALVMGSEGKGMRRLTEEKCDFLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAES 197 >gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1] Length = 193 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 58/150 (38%), Gaps = 13/150 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI---AD 83 N+G + R+ ++++ L + + ++ A+ +D + L A+ +D Sbjct: 53 NVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANGLTLALRAKSD 112 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + + A + + P + + + ++ G E G+ + L + + Sbjct: 113 GYHLIALEGGENSLPLHTILP----------LNDSRPILLVAGNEVTGIDPDIFELCDTV 162 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSI 173 P+ + SLN++ A + ++ + + Sbjct: 163 TFLPMFGIKNSLNVAVATGIALYLLRLSQV 192 >gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 302 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S + + I+ G E GL + I + + P++ SLN++ A + WE + Sbjct: 247 LNSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302 >gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 251 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++G++ G E G++ + I S P+N SLN S A ++ +E + I Sbjct: 189 GSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQRIAKGA 247 >gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 294 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 6 PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P Q A+GP ++ L + N G V R + + K +SA Sbjct: 117 PLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAG 176 Query: 64 ADCVIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +D VR L EA+ I ATT ++ + A Sbjct: 177 SLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAA----------P 226 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 +FG E GL +E A ++A + P++ SLN++ A + ++ V Sbjct: 227 TAWLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSARALRVPRGTRE 286 Query: 181 KEQNTPAT 188 + ++ Sbjct: 287 TAGESASS 294 >gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVN 149 R + VLA L SG +FG E GL +E +AL++ + P+ Sbjct: 182 RVKAAGLQVLAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIY 241 Query: 150 PLFPSLNISQAVLLMVWE 167 S+N++ A + ++E Sbjct: 242 GQAESMNLATAASVCLYE 259 >gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P] gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P] Length = 265 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 22/161 (13%) Query: 18 ILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ILV + NIG + R N+ + + NP+ + +S Sbjct: 117 ILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRASIGCVFTTQIA--VG 174 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E I+ L +YATT +N N + + + I G E G Sbjct: 175 TSEEIISYLTENNIRLYATTLQNSNEYH--------------KENYTEASAIAVGTEDTG 220 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 LT + I+ P+ S+N+S A ++++E Sbjct: 221 LTAVFRERATQNINIPMQGEIDSMNVSVAAAIVLFEAKRQR 261 >gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus F0309] Length = 290 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 9/143 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE--AIAD 83 N+G R+ + LV P+ P ++ S I R+ S + A+ + Sbjct: 146 NVGAAFRSATALGV-DAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSWPGDITALQE 204 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F A+ A + ++ + L G + ++ G E GL + IA S+ Sbjct: 205 AGFTVASLALSDDSVS-----LDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAASDYT 259 Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166 + P++ SLN++ A ++ W Sbjct: 260 VKIPMDHGVDSLNVAAASAVVFW 282 >gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM 13031] Length = 248 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 15/168 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ +++L NIG + R + LV + + +SA A + Sbjct: 94 PRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGA---L 150 Query: 69 DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +R+ +L A+ LH V+A A + + I+ G Sbjct: 151 SHMRICKVKSLVRALEYLH----------EKDIQVIAADMDAELNYNDADMKRATAIVLG 200 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ E + + ++ P+ SLN+S ++++E M ++ Sbjct: 201 MEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYESMRQRLL 248 >gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 261 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----- 64 N ++IL D N+G + R N + L +EK ++ + Sbjct: 107 NCLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRATMGSILNVN 166 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 ++ + LKE + + I AT K L +I + +I Sbjct: 167 LFYLEKQEIIKLLKE---NNYSIIAT-----YLDKEALP--------YNKIKLKEKNAVI 210 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E G+++E +++S+ P+ SLN++ A +++++ E Sbjct: 211 FGNEGRGISDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFRE 256 >gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 302 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 11/171 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G V+ L + N+G V R++ F + + R + SSA + +V Sbjct: 143 GMVVFLDNITDPRNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKV 202 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N+ A+ + ++ V I+ G E GL+ Sbjct: 203 -TNMTRALKQFQ----------EAGYQAIGLDAGGEHTHDSYDGTGPVVIVVGSEGKGLS 251 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + I++ P+ SLN S A +++ E + V E+ Sbjct: 252 RLVKETCDTIVTIPMEGWVESLNASVAAGVVLAEFARQRRNKAAAAVAEEQ 302 >gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM 12333] Length = 167 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 22/143 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76 I P++ N G R T L LV P G+ +A+ A D + V V + Sbjct: 9 IFHTPRIPGNTGAAIRLAALTGAT-LHLVEPL-GFDMSEAKLRRAGLDYHDLAHVVVHPD 66 Query: 77 LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+ +YA T A E + ++FG E GL Sbjct: 67 LDAALDAVGSGTRVYAFTG--------------HAERSFEDVRYAVGDALLFGAEPTGLP 112 Query: 134 NEEIA--LSNAIISFPVNPLFPS 154 E +A + P+ P S Sbjct: 113 PEVLADPRLTDRVRIPMLPGLRS 135 >gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 280 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + NIG + R+ + + L + +A S I N Sbjct: 125 VLENVMNPTNIGAIFRSAAALGMDAVLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNA 184 Query: 78 K------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 EA+ L F A A ++ S+ P ++ + + + +I G E G Sbjct: 185 DLSCGGLEALRSLGFQTAAMALKEDSV-SIDDP---------KLLAAEKLAVILGTEGDG 234 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + I + + P+ SLN++ A + WE +N Sbjct: 235 LASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFWELTKNR 275 >gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513] gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] Length = 297 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64 L+ + L + N+G V R + L+ S + ++ + Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 ++ + FS L + T + +++++ + Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + V +I G E+ GL + + + P SLN++ A +M++E ++ Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294 Query: 177 EKN 179 E+ Sbjct: 295 ERG 297 >gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium] Length = 220 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 35/187 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--------KARSSSANA 64 K + ++ DP +NIG V R + + ++ +V+PR+ P + +S +A Sbjct: 23 KNLIAVIEDPSNIKNIGTVIRNVNALGVEKVYVVDPRNALPDDWQEMREKRSLSKTSVSA 82 Query: 65 DCVIDS---------------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPK 105 + V+ F + + I L T+ + ++L Sbjct: 83 VKWSEKRSLSKTSVSAVKWSFVKRFDSTEACIEHLEENRFVSIVTSPHIKGKKNAILGEV 142 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + FG E G+++ + S +S P+ + SLN+ +++ Sbjct: 143 DY--------TEHYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTTSGIVL 194 Query: 166 WECMENS 172 +E + Sbjct: 195 YEVTKQR 201 >gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 267 Score = 55.1 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150 T R + P AA L +G+ V ++ G E GLT E + + P+ P Sbjct: 187 TLREHGFQLIAMTPDPAARNL-ASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTP 245 Query: 151 LFPSLNISQAVLLMVWECMENS 172 SLN++ A + +E + + Sbjct: 246 GTDSLNVATAAAMAFYERVRTA 267 >gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus DSM 2926] Length = 236 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V++L Q N G + R+ F + + + +E +S A +D ++ Sbjct: 87 KSIVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPERNSVKINETVVKTSTGAIEHVDIIK 146 Query: 73 VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +N+ EAI L ++Y + + P ++ G E Sbjct: 147 V-TNISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYP--------------NRTALVMGGE 191 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+ + + +++ P+ SLN+S A +++ E + Sbjct: 192 GSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILLSEIAK 233 >gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 321 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 17/166 (10%) Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + NS P+I+ L N+G V R+ F + L R + A +SA Sbjct: 162 EAHNSGLPPLIVALDGVTDPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTA 221 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + R + LK+ ++ + A ++ I +E + + Sbjct: 222 AKLPVARAVNLTRTLKDLKSEGLMVVGLDA-------------DSDITSDELELATGPLV 268 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ G E GL+ + +S P+ SLN S A +++ E Sbjct: 269 VVVGSEGRGLSRLVRETCDQTVSIPMAGSVESLNASVAAGIVLAEV 314 >gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 223 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 21/172 (12%) Query: 18 ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +LV+ N+ + R + + ++ + + + + + +++ N Sbjct: 24 VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 AI+DL +Y TT + + QN + G E+WGL Sbjct: 81 TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + E I++ + I P+ + SLN+S A ++++E + + + Sbjct: 128 SKEIISMVDQSIFIPMRGMVQSLNVSVAASILLFEAIRQRKNKGKLPTNGEG 179 >gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1] gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1] Length = 179 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 67/165 (40%), Gaps = 19/165 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P++ +N+ + R N +L ++ P ++ + ++ + +++ + Sbjct: 7 IVLYEPEIAQNVAAIIRTCVATN-AKLHIIEPLGFIFKKEEMNRASAGTFDLVEYQLYDD 65 Query: 77 LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + +R K + + V ++FG+E G+ Sbjct: 66 WEDFCEKNPSIDLFC----ISRYGEKPHSDFDFNSYQ--------KPVFVMFGKESTGIP 113 Query: 134 NEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++I N +F P++P S+N++ V ++ +E + + Sbjct: 114 -KQIIKDNYENTFRLPMSPQTRSINVANTVGIVTYEILRQWDYPT 157 >gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+IL + Q N G + R+ F + + + +E +S A +D V+ Sbjct: 87 KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRVNETVVKTSTGAIEHVDIVK 146 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +N+ EA+ + + V + + ++ G E G+ Sbjct: 147 V-TNISEAL----------LKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGI 195 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I P+ SLN+S A +++ E +++ Sbjct: 196 RKKVKENCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234 >gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str. 2308 A] gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina EX-H1] Length = 242 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL +N+G + R + + + R +E +S A + +V N Sbjct: 96 VILDHITDPQNVGNIIRTAEVLGSSGIIVPRERSSPINEVVVKASTGAVFYLPIAKV-GN 154 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +++ I K + L I+ G E G++ Sbjct: 155 IRQFIDKFKKRGGWVISVEKGGKPIHKVSFPFPAL-----------IVLGSEGKGVSKTV 203 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + S+ I+S P+ SLN+S A + +WE + Sbjct: 204 LENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238 >gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative [Synechococcus sp. PCC 7335] Length = 365 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 20/178 (11%) Query: 6 PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 Q +N A+ PVI+ N+G + R+ + + R + SA A Sbjct: 181 QQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQRRAVGVTSTVAKVSAGA 240 Query: 65 DCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 I RV NL A+ + +IY TA +S+ +A V+ Sbjct: 241 LENIPIARVI-NLGRALEYLKSNSFWIYGLTA---EAAQSIHTTDFSAPVV--------- 287 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E GL+ L + ++S ++ PSLN S A + ++E + + Sbjct: 288 --LVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQTWIDKLP 343 >gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1] gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1] Length = 288 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 7/172 (4%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + V +L + N G V R + L + + K+ +S + Sbjct: 117 EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 176 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + +++A+ L A R + L+ G +F Sbjct: 177 FHLPVAVGVP-VEQAVEGLR-----AAGVRILAADGAGEDDLDAELDAGTM-GTPSAWVF 229 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 230 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPGG 281 >gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium xylanolyticum LX-11] Length = 256 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 11/159 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R+ FN+ + +N + K S+ + + V ++ Sbjct: 109 VILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLP---VVND 165 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ + L + + + +L+ A +N +IFG E G+ Sbjct: 166 VEP--SRLFHVL------KKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLL 217 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ P++ + SLN+S A + ++E ++ Sbjct: 218 DEFIDSSFKIPMDGMAESLNVSVAASICLYESERQRLIK 256 >gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158 str. F0412] Length = 264 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I L Q N+G + R + + L+ ++K S+ +A + + + Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + ++ ++ LH I A +N + + E + + + ++ G E G+T Sbjct: 172 YEDIT--LSMLHDIVA-----ESNMTTYVTALENSEP-YHSVNYAKRTMLVLGNEGNGVT 223 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + L I P+ SLN+S A L +++ E Sbjct: 224 PEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261 >gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P+ +G ++L Q N+G + R F + + L S K +S Sbjct: 94 PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASX 151 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120 A RV L T A R V L E + Sbjct: 152 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEP 200 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ E A ++ P + SLN++ A ++ E S Sbjct: 201 AILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 257 >gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14] gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14] Length = 155 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 32/158 (20%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + R + + + Sbjct: 10 CIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGTRYDH-----------------AAQFCT 52 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSG----QNVGIIFGRE 128 + K+A D+ I + K + P ++ + + IFG E Sbjct: 53 DTKKASLDIPLIG-----VEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE 107 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L E I P N S+N++ AV ++++ Sbjct: 108 DGTLKKEITDFCRETIYVPTN---GSMNLAAAVNVILY 142 >gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 255 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ ++ + + R + +S A + RV + Sbjct: 115 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 173 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A+ D + I+ T + K + + ++ G E G++ + Sbjct: 174 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKIVLVIGNEGKGISPLLLK 218 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A +++++ + Sbjct: 219 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 252 >gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14] Length = 285 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 28/162 (17%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ ++ + L + +A S I + + + Sbjct: 136 PTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQDDKE---RRC 192 Query: 85 HFIYATTARNRNNFKSV--------LAPKEAAIVLNE--------RIFSGQNVGIIFGRE 128 R + V L K AA+ L + ++ S + + +I G E Sbjct: 193 D---------RKDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTE 243 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 GL E I + + P++ SLN++ A + W+ + Sbjct: 244 GDGLMQETIKACDYTVKIPMSHGVDSLNVAAASAVAFWQLRK 285 >gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149] Length = 275 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + Q N+G + R +T + + + K S+ A + V +L Sbjct: 130 ILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFV-YVEDL 188 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +E I T + +N E G + G E GL EEI Sbjct: 189 RETIH--------TLKEKNIKSYAAHLDGKNTYDKEDYRQG--TAFLIGNEGNGL-REEI 237 Query: 138 ALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A + I P+ SLN + A ++++E Sbjct: 238 AQCADTWIRIPMCGQVESLNAAVAATVLMFEVSRQR 273 >gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217] Length = 258 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 21/158 (13%) Query: 8 LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + P ++L+ N+G + R+ F ++ PR + + + + A Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGAR--AVIAPR-HHAAPETGALAKTASG 159 Query: 67 VIDSVRV--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ NL +AI +L + E I + Sbjct: 160 ALERQPYLRVRNLADAIIELQAMGYLVLGLAGEA-----------EMTIEAAMEGRRDRP 208 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 V ++ G E GL + +A++ F SLN+S Sbjct: 209 VALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVS 246 >gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus moniliformis DSM 12112] Length = 232 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 19/159 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL Q N G + R+ F ++ + + + + +E SS A +D V+V + Sbjct: 89 IVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNVKVTETVVKSSTGAIEHVDIVQV-T 147 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N+ ++I L F+Y A + PK ++ G E G Sbjct: 148 NIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPK--------------KKALVLGSEGKG 193 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++I+ + SLN+S A +++ E + Sbjct: 194 MRKRVRESCDSILKIHLKGEINSLNVSVAAGILLSEMSK 232 >gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1] gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1] Length = 302 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 13/181 (7%) Query: 2 TPYAPQLQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 +P L+ P + LV EN+G + R+ + L+ P P + Sbjct: 128 SPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSAAALGVRD-ILLGPHTISPMTRR 186 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A F N + DL A+ A ++ L AI RI Sbjct: 187 VIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSNAIQSKRRI- 245 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL E + + P+ SLN+ A + ++E Sbjct: 246 ------LMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLQDADH 299 Query: 177 E 177 Sbjct: 300 G 300 >gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4] Length = 293 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 21/180 (11%) Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEK 56 P P+ + K +++L N+G + R F +T +R S Sbjct: 129 PLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMR----HSPTESGV 184 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S++ A +I +++ +NL EA+ +LH + + + L E F Sbjct: 185 LAKSASGALELIPYIQI-TNLAEALGELHKLGFVSIGLDSEGPRPL----------EETF 233 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 SG + ++ G E GL + NA+ + SLN+S A + ++ + + S Sbjct: 234 SGDKLALVLGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLRQS 293 >gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 235 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 18/143 (12%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82 N V R+ F + + L+ + G + + + +D R S + Sbjct: 63 HNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAM--GSQKWVDIHRYESTKNCMDTLKQ 120 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + I ATT P + +L + G + + FG ER GL+ E + ++ Sbjct: 121 NGYKIIATT------------PHNDSCLLEDFEIEG-KIALFFGTERNGLSEEVLKNADG 167 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 + P+ SLNIS + +++ Sbjct: 168 FLKIPMVGFTESLNISVSAAIIL 190 >gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 294 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 15/160 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + V +L + + N G V R + L + + KA +S + + Sbjct: 137 ARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPV 196 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFG 126 ++ A+ L R +LA ++ +R G IFG Sbjct: 197 AVGVP-VETAVTGL----------REAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFG 245 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 246 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 285 >gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] Length = 271 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 18/153 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G V R+ F + + + + A + I L A + H Sbjct: 126 NLGAVIRSAAFFGIEHIVISGEDAQAQLTPSAYRIAQGGMEFI-------TLYTAPSAEH 178 Query: 86 FIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 F+ A + R + ++ + K+ ++ + V ++ G E G++ E L + Sbjct: 179 FLKACSGYLMRLGADHRAYRSLKDIPSLVRA----DEAVVVVLGNEEHGISAEAKKLCDV 234 Query: 143 IISFPVNPLFPSLNISQAVLLMV---WECMENS 172 ++ + SLN++QA L E S Sbjct: 235 LVKISGSGAIESLNVAQAGTLFCSALAELRRES 267 >gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 303 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans CJ2] gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans CJ2] Length = 259 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 17/164 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P AP LQ + +IL Q N+G + R+ F Q+ + S K + Sbjct: 108 PTAPPLQANVAS--VILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGM 165 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + V EA+A L V+ L+++ Sbjct: 166 GAHFALRLVEGVD--PEALAALTV------------PIVVTSSHHGSFLHQQPIPM-PCA 210 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G++++ +A ++ + SLN++ A + ++ Sbjct: 211 WAMGHEGQGVSDDLMARASLKVRIDQPGGEESLNVAAAAAICLY 254 >gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol] Length = 285 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGT-------DMYGMDYRRW--------NTQGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius C56-YS93] gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1] Length = 256 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 20/151 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K ++ + + +R NL+E I Sbjct: 116 QDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPIIR--GNLREWIE 173 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L IY T+ N +++ + P+ ++ G E G+ E + Sbjct: 174 KLQEQNVPIYGTSLENGEDYRCINPPR--------------PFALLVGNEGSGVHKELLQ 219 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ + P+ SLN++ A ++++ Sbjct: 220 MTTKNLYIPIYGQAESLNVAVAAGILLYHLR 250 >gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 249 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 19/173 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L ++A+G ++LV Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVDAAQGRALVLVLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQRLGA 249 >gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM 21211] gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus maricopensis DSM 21211] Length = 242 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 21/162 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 V++L N G + R+ +V R P S ++A A + + Sbjct: 90 VVLLDGITDPRNFGAIIRSAEVLGAHG-VIVEERRSAPLSPVVAKTAAGATSYLPVAQT- 147 Query: 75 SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL I D ++Y EAA L E + G + ++ G E Sbjct: 148 KNLPRLIDQLKTDGVWVYGAAG-------------EAARDLRELDYRG-KLALVIGAEGE 193 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + ++S PV SLN S A +++++ + Sbjct: 194 GLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQALAGR 235 >gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus acidocaldarius LAA1] Length = 255 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++L + N G + R + + R ++ ++A A + R Sbjct: 106 SPLVVVLDEIADPHNFGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVAR 165 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +N+ +A+ R + ++ A V + ++ G E G+ Sbjct: 166 V-ANVAQALQ----------RLKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGM 214 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN S A ++++E + Sbjct: 215 RRWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254 >gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787] Length = 257 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L + Q N+G + R +T + + N + K S+ + + V + Sbjct: 112 IVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFV-YVDD 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + TT A ++ I+ G E GL +E Sbjct: 171 LLALLDKFQKKKVTT----------YAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEV 220 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN + A ++++E Sbjct: 221 AEKADVWVQIPMQGKVESLNAAIAASILMFEVYRQR 256 >gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo] gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo] Length = 222 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + FG E GL++E + ++ I P+ S NIS AV ++++ + Sbjct: 131 NKMAVFFGTELTGLSSEVLEAADLCIKIPMYGFTQSYNISVAVAIVMYSLL 181 >gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 262 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L +EK S+ + + ++ + E Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMP---IYYDDDE--- 173 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 I + ++ F ++ E++ + G+ + + G E G++NE + L++ Sbjct: 174 -FSLI---KSLKKDGFTLIVTSLESSKDFFKEDLKGKII-LTVGNEGNGVSNEVLDLADR 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P+ SLN++ A ++++E + ++V+ Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261 >gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str. Alaska E43] Length = 262 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L +EK S+ + + ++ + E Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMP---IYYDDDE--- 173 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 I + ++ F ++ E++ + G+ + + G E G++NE + L++ Sbjct: 174 -FSLI---KSLKKDGFTLIVTSLESSKDFFKEDLKGKII-LTVGNEGNGVSNEVLDLADR 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P+ SLN++ A ++++E + ++V+ Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261 >gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 290 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 7/146 (4%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF-SNLK----EA 80 N+G + R+ ++ LV P P +A S + R+ ++ + Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQG 195 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + +LH + TTA + S+ + + +IFG E GL+ IA + Sbjct: 196 LEELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANA 255 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 + + P++ SLN++ + + + Sbjct: 256 DLTVKIPMSHDVDSLNVAASSAVAFY 281 >gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28] gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis M5-90] Length = 303 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella anatipestifer DSM 15868] gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella anatipestifer DSM 15868] Length = 258 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 26/176 (14%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P++ K P ++IL N G + R + + + + A +SA A Sbjct: 99 PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 158 Query: 65 DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + +V++ NL + + + AT E A L + Sbjct: 159 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDVDF 200 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G++ E + S+ I P+ SLN+S A +++E + + Sbjct: 201 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256 >gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2] Length = 240 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + +++L + N+G + R + + R+ + S A Sbjct: 82 ESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVIIGKHRNVRLTPTVAKVSTGAI 141 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V V +NL +AI L ++ T +F++ +E + + Sbjct: 142 DTV-KVSVVTNLVQAIKYLKKQGYWVVGT------DFENSRDYREGQYDV--------PL 186 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E +G+++ + + P+ SLN S A +++++ Sbjct: 187 VLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 237 >gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum reducens MI-1] Length = 243 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +I+L + N+G + R + + R + +SA A + RV + Sbjct: 97 IIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARV-T 155 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + I L ++ V+ + + ++ G E GL Sbjct: 156 NLDQTIRQL----------KDEGLWVVGADMDGSEIYWDAKLTGPLLLVIGGEGKGLGRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A L+V+E + Sbjct: 206 IKERCDMLVRLPMAGRVGSLNASVAAALLVYEVVRQR 242 >gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 325 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 10/162 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +Q ++ L N+G V R+ F + + R + A SA A Sbjct: 167 SVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVTTAAWKVSAGAAA 226 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V +NL A+ D R F V L + + ++ G Sbjct: 227 R-VPVARATNLVRALEDC---------KRAGFFVVGLDGGGDAPLRGLPLADGPLVLVAG 276 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E GL+ + I+S P++ SLN + A + ++E Sbjct: 277 AEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEV 318 >gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 258 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 22/171 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70 V++ + N+G + R+ F L ++ P+ +PS SSA A + Sbjct: 100 NSLVVVADKIKDPNNLGAIIRSAEVFGA--LGVIFPKRNSAYPSSAVHKSSAGASMRV-M 156 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + SNL AI L ++ R + + + ++ G Sbjct: 157 MVSVSNLVSAIKRLQENGMWVVGLDQRADRYLWDEPSIR-------------GKLTLVVG 203 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E G++ + I S P+ SLN + A + ++E ME+ + E Sbjct: 204 SEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYEWMESVVKGGE 254 >gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074] Length = 275 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 15/160 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + V +L + + N G V R + L + + KA +S + + Sbjct: 118 ARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPV 177 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFG 126 ++ A+ L R +LA ++ +R G IFG Sbjct: 178 AVGVP-VETAVTGL----------REAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFG 226 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E WGL E AL++A++ P++ SLN++ A + ++ Sbjct: 227 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266 >gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510] gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510] Length = 165 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 17/159 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75 +L +P + +N G + R + L L+ P G+ + R A D + +D R Sbjct: 4 VLFEPDIPQNTGTLMRLAAGLGVA-LDLIEP-CGFLLDDRRLRRAGMDYIDHLDWTRH-- 59 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A A R+ +L + A + R G I+ GRE G+ +E Sbjct: 60 ---------SSWAAYCATPRDGRLVLLTTRAAIPYTDFRFAPGDR--ILVGRESAGVPDE 108 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++A + P+ P SLN++ + +++ E + + Sbjct: 109 VHDAADARLLIPMMPPARSLNVAVSAAMVLGEALRQTAA 147 >gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 154 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I+ P + N G R N +L L+ P S+ + + +V V Sbjct: 3 RIMFYQPCIPPNTGNAIRLAANTGC-ELHLIEPLGFSMSDAQVKRAGLDYHEMATVTVHP 61 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL A L ++A TA A + + ++FG E GL Sbjct: 62 NLVTAWTTLKPERVFAFTA--------------HAERFHTDVDYAPGDVLLFGPEPTGLP 107 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ +A + P+ S N++ A + V+E Sbjct: 108 DDVLAEPEITDRVRIPMLAGRRSHNLANAASIAVYEAWRQQ 148 >gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 273 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 14/160 (8%) Query: 18 ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ILV P+ NIG + R + + + NP+ + SS + + + Sbjct: 122 ILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGS--LFTNKIATG 179 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 E I L + A A I + II G E GL+NE Sbjct: 180 TTSEIIQFLQ----------AQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNE 229 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + S I P++ S+N+S A ++++E +V Sbjct: 230 WLENSTQNIIIPMHGKIDSMNVSVAAGILIFEAKRQRLVE 269 >gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC 19718] Length = 277 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 14/163 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L Q N+G + R+ + + L + S K + A + Sbjct: 122 ILLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDL 181 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ A + ATT A L G V +FG E G++ E Sbjct: 182 IQVARQFAGNVVATT-------------LHDASNLFHTDLRGA-VVFVFGNEGGGISEEL 227 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + + P+ SLN++ A + ++E + + + + Sbjct: 228 LETVHQRVMIPMPGCTESLNVATAAAICLFEKVRQDTCAGDSH 270 >gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 279 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 18/148 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAI- 81 N+G + R L L++ S +A +S A + R ++ +E + Sbjct: 142 PGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQAR-WAEFQEWLR 200 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + A + R+ P A ++ G E GL E + Sbjct: 201 QGEGQLVAASLRDAQ-------PYRGAPYAA-------PCFVMVGNESRGLPEEYEMACD 246 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN + A ++ +E + Sbjct: 247 LRVTMPMKGRADSLNAAVAGAVLAYEVL 274 >gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 212 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 70/183 (38%), Gaps = 22/183 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + +I+ + N+ + R+ + ++ V+ R +++ +++A A Sbjct: 2 LLHRQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEIHAVSYRKSIYAKQ--NAAAGASKW 59 Query: 68 IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ + ++ A + + AT +F+++ Sbjct: 60 L-TLTLHPDIASAYRKVSACGMQILVATGKEGSRDFRAIDYTV--------------PTA 104 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++ G E G++ E I ++ I+ P+ + SLN+S A ++++E ++ Sbjct: 105 LVMGAEWDGISEEAIKGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAEKGMYKRQQ 164 Query: 183 QNT 185 Sbjct: 165 LEE 167 >gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9515] Length = 349 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 21/165 (12%) Query: 8 LQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ + P+ + L N+G + R+ F+ + + R + +A A Sbjct: 196 TKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALE 255 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I RV NL AI +L I + + + + A ++ Sbjct: 256 HIPVSRVV-NLNRAIDELKKNGFLIVGLSG---DGQIPISKFDQKAPIV----------- 300 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVW 166 ++ G E G++ + ++ P+ SLN S A + + + Sbjct: 301 VVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCY 345 >gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1] gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1] Length = 303 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 25/190 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ + ++ + N G V RA + L + KA S+A + Sbjct: 123 SVLDAGPRLIAVMCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLF 182 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNR-------NNFKSVLAPKEAAIVLNERIFSGQ 119 + V + ++++E +A R R + + +V K R+ +G Sbjct: 183 HLP-VVLGADVEELVAQC--------RRRGIGILAADGYGTVNLDKLQDENAARRLGNGS 233 Query: 120 ---------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E GL++ E+AL++ ++ PV SLN+ A + ++ Sbjct: 234 VASDYALESPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNLGTAATVCLYASAR 293 Query: 171 NSIVSSEKNV 180 + + NV Sbjct: 294 SQQGARVGNV 303 >gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri] gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri] Length = 308 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 12/139 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R+ + +V+ + + KA ++ V F + A+ Sbjct: 79 GNMLAVCRSTEALGIGCAAIVSSKG--LNFKASGRTSGGALKWQRVERFDSTTAALR--- 133 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A++R VL + ++FG E+ G++ E A+S+ + Sbjct: 134 -----AAKSRGMR--VLTTEFEGAYPMSHYDWTIPTAVVFGNEKTGVSEEARAMSDGGVF 186 Query: 146 FPVNPLFPSLNISQAVLLM 164 P+ SLNIS A L+ Sbjct: 187 IPMYGFTESLNISVAAALV 205 >gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83] Length = 254 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P+ +G ++L Q N+G + R F + + L S K +S Sbjct: 91 PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASM 148 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120 A RV L T A R V L E + Sbjct: 149 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEP 197 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ E A ++ P + SLN++ A ++ E S Sbjct: 198 AILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254 >gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 255 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +FG E GLT+E AL++ +IS P+ S+N++ A + ++E Sbjct: 198 DHPTAWLFGNEARGLTDEHYALADWVISVPIYGHAESMNLATAASVCLYE 247 >gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139] gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA3] gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA4] Length = 277 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A + ++ L+ E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVAAMALSGDS----LSLDEFSADLRQNP---RKVALLMGTEGTGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ P+ SLN++ A + +E E + VS Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELREVTRVS 274 >gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 254 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P+ +G ++L Q N+G + R F + + L S K +S Sbjct: 91 PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASM 148 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120 A RV L T A R V L E + Sbjct: 149 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLEGQSLYEAPLPNFTEP 197 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ E A ++ P + SLN++ A ++ E S Sbjct: 198 AILVLGSEGHGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254 >gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 249 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ ++ + + R + +S A + RV + Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A+ D + I+ T + K + ++ G E G++ + Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A +++++ + Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246 >gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 249 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ ++ + + R + +S A + RV + Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A+ D + I+ T + K + ++ G E G++ + Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A +++++ + Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246 >gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna ACS-171-V-Col3] Length = 234 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 26/167 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + N + IIL N+G + R+M F L L++ + KA +S A Sbjct: 84 EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVRASMGAFF 143 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQN 120 + +++ F NL++ K+ K + +L+E + Sbjct: 144 KL-NIQKFDNLED-----------------YKKNFPNNKIYSFLLDESSNELGDVKFDEP 185 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + FG E GL E + I + SLN+ A + ++E Sbjct: 186 FSLAFGNEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230 >gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 320 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L++ ++ L N+G +AR+ FN L + R + A +SA Sbjct: 161 ALESDTPALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWKTSAGTLA 220 Query: 67 VIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + +NL A+ F+ A + + + + Sbjct: 221 RLPVAQ-ATNLTRALEGYKKEGVFVVGLDAGGDTP-------------IPDLELATGPLV 266 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E GL+ + + S P+ SLN S A + ++E + Sbjct: 267 IVIGSEGKGLSRLVREACDVVASIPIGNA-ESLNASVAAGVSLYEVARRRSAAKG 320 >gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 255 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ ++ + + R + +S A + RV + Sbjct: 115 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 173 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A+ D + I+ T + K + ++ G E G++ + Sbjct: 174 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 218 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A +++++ + Sbjct: 219 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 252 >gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 249 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ ++ + + R + +S A + RV + Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A+ D + I+ T + K + ++ G E G++ + Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A +++++ + Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246 >gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium colombiense DSM 12261] Length = 298 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 14/177 (7%) Query: 1 MTPYAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 M + P L+ + +GP+ ++L N+G + R T + R P Sbjct: 130 MEDFLPTLK-TKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGGTVV 188 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 SA A + + V + I T R + V+ A Sbjct: 189 KVSAGAALRVPMISVTN-----------IAQTITRLQEEGFWVVGLDHNAPQSLWGATYP 237 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL+ + ++ P+ SLN A L ++E V Sbjct: 238 DKSSLVVGAEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWARAKGVD 294 >gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio angustum S14] Length = 244 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L ++IL N+G R + + R + A + A + Sbjct: 90 LVGKENPLLLILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEI 149 Query: 68 IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + VRV +NL A+ D +I T A + + I Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYQSKLTGPLAI 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + +I P+ SLN+S A + ++E + Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205] Length = 238 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 65/188 (34%), Gaps = 20/188 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + +++ N+ + R + +V+ + +++A Sbjct: 22 LNHRMGDLTVVMEQVDKPHNLSAILRTCDAVGALEAHVVS---LPGRPRTFNNTAKGSQK 78 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +++ + L IY T + + ++ Sbjct: 79 WVPLHPHPSIEGCLQGLKDKGFRIYGT-----HLSVDAVDYRDCDFT--------GPSCF 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 + G E+WG++ E +AL + + P+ + SLN+S A +++E + + + + Sbjct: 126 LMGAEKWGMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRAGKVPSNGE 185 Query: 184 NTPATKGE 191 P + E Sbjct: 186 GIPGGESE 193 >gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365] Length = 231 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 17/165 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N V R++ LT L + P + + A + ++ I +R Sbjct: 58 PHNGAAVVRSVEAVGLTSLHVAEPIERFQFSPAV--AIGSEKWIRVLR------------ 103 Query: 85 HFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 H + AR R + A A + + I Q ++FG E GL+ I +A Sbjct: 104 HQGFTACARILRGAGFRMYAACPDAEMSMDDIDVSQPSAVVFGNEHEGLSRRAIDACDAK 163 Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTP 186 ++ P++ SLN+S +V + +++ +++ ++++Q Sbjct: 164 VAIPMHGFTQSLNLSVSVAVSIFQLAARRRALLGRLGDLEDQERA 208 >gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4] Length = 249 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R ++ +S A I VRV + Sbjct: 100 ILDEIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + + T A+ +++ + +G++ G E G++ Sbjct: 160 RTMDDLKKRGLWFAGTDAKGSADYR--------------QASFDMPIGLVIGSEGKGISR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN S A L+++E Sbjct: 206 LIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEVYRRR 243 >gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05] Length = 302 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82 N G + R + V+ + K S+A + + V+ V + A Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 I A + K V PK +L ++ I+FG E GL E + + Sbjct: 212 SNIRIIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 I P+ S+N++ + +M+ Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290 >gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 324 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA----- 80 N+G + R+ ++ LV P P +A S + R+ + A Sbjct: 159 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPG 217 Query: 81 IADLHFIYATTA---------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 I LH + TT + + + P AA ++ V +IFG E G Sbjct: 218 IDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVD--KVALIFGTEGDG 275 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L+ + +A ++ + P++ SLN++ + + + Sbjct: 276 LSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 310 >gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074] Length = 312 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 17/167 (10%) Query: 10 NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65 ++ + P+I+L+ N+G V R++ F + + R + A SSA A Sbjct: 158 DAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGAAART 217 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + + L+ + + A + + + V I+ Sbjct: 218 PVARATNLTRTLEAYKKEGVVVVGLAA-------------DGEADVTDLPALEGPVAIVV 264 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + + P+ SLN A ++++E Sbjct: 265 GSEGKGLSRLVGETCDIRVRIPMPGGAESLNAGVAAGIVLYEAARRR 311 >gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191] gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191] Length = 249 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 17/151 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 +N+G + R+ + + L + R + ++ A + V V NL A+ Sbjct: 110 PQNLGSIIRSAACLGFSTIILPSRRTVGLTPSVYKVASGAT---EKVTVVEVANLATALL 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL F A + + ++ G E G+ + + Sbjct: 167 DL---------KDEGFWIYGA--DMGGQSIVKTDYSFPAVLVVGSEGTGIREKTAEHCDQ 215 Query: 143 IISFPVNP-LFPSLNISQAVLLMVWECMENS 172 ++S P P SLN + A +++++ + Sbjct: 216 VVSIPQAPGSVDSLNAANAASIIMFDMFAKA 246 >gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter upsaliensis RM3195] Length = 229 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L N+G + R + + L + E SS+ A + Sbjct: 85 IVMLCGISDVGNMGAIIRTAYALGVDGLLFIG--KNLAQESIVRSSSGAALDLPICLSND 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ +L + + ++ F +I G E +GL+++ Sbjct: 143 AL-SALNEL----------KQMEFKLYGADGKGREVHHLTFPKGKKVLIMGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I + + + F SLN+S A ++ Sbjct: 192 IIQKCDECVGIAMQNDFDSLNVSAAFAILC 221 >gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 262 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + Q N+G + R +T + + + K S+ + + V +L Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFV-YVEDL 173 Query: 78 KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 KEAIA + T A + + S ++ + + G E GL E Sbjct: 174 KEAIAKVKAHGIFTYAAHLDGKNSY-----------DKEDYTKKTAFLIGNEGNGLRKEI 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L++ I P+ SLN + A ++++E Sbjct: 223 ADLADTWIRIPMQGQVESLNAAIATSVLMFETARQR 258 >gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL001PA1] gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA2] gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL060PA1] gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA2] gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL103PA1] Length = 277 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A + ++ L+ E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVAAMALSGDS----LSLDEFSADLRQNP---RKVALLMGTEGTGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ P+ SLN++ A + +E E + VS Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELREVTRVS 274 >gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str. Cudo] Length = 303 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis TX0855] Length = 285 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV L Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARVTK-L 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + + + + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera] Length = 569 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 23/184 (12%) Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + P L KGP+ + L + +N+G + R+ + F ++ + L S Sbjct: 387 IKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSK 446 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERI 115 +SA + +++ +R N+ + + T+ + N VL +P+ AI LNE I Sbjct: 447 ASAGSLELME-LRFCKNMMQFL--------TS--SAENGWQVLGGSVSPR--AIPLNE-I 492 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN-PLF---PSLNISQAVLLMVWECMEN 171 G ++ G E GL +I P N P F SLN+S A +++ + N Sbjct: 493 SPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLNVSVAAGVLLHHLVGN 552 Query: 172 SIVS 175 S + Sbjct: 553 SYEN 556 >gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787] Length = 250 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70 I+L + + N+G + R + + R + +SA A V + Sbjct: 105 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 164 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + LKE L F+ A + R+ +G++ G E Sbjct: 165 AKTMEELKE--KGLWFVCA----------------DMGGESMYRLNLTGPIGMVIGNEGD 206 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + I S P+ SLN S A ++ +E + + Sbjct: 207 GVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 249 >gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia PC184] Length = 106 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 19/117 (16%) Query: 60 SSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ A + + V +NL A+ +L +I T+ EA L E Sbjct: 1 MASGAADTVPYITV-TNLARALRELKEAGVWIIGTS-------------DEAPATLYETK 46 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G V ++ G E G+ + ++S P+ SLN+S A + ++E + Sbjct: 47 LDG-PVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 102 >gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] Length = 168 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 32/183 (17%) Query: 1 MTP----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56 MTP P + A ++L P++ +N G + R+ +L L+ P + Sbjct: 1 MTPDEDHSPPAGDSHAPLLNVVLYQPEIPQNTGNIGRSCVAIG-AKLWLIRPLGFQLDSR 59 Query: 57 ARSSSANADCVIDSV--RVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLN 112 + + + + E L ++ T + V Sbjct: 60 YLKRA--GLDYWEHLDWEAVDSWDEVKRRLPNSNVFCLTKFGSKHPWDV----------- 106 Query: 113 ERIFSGQNVGIIFGRERWGLT----NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G ++FG E GL E + P+ SLN++ +++E Sbjct: 107 -SFAPGDI--LLFGSESSGLPVSIRGEYAGQC---VRLPMRTQVRSLNLASTANAIMYEA 160 Query: 169 MEN 171 + Sbjct: 161 VRQ 163 >gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E980] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKEIGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 271 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 53/167 (31%), Gaps = 10/167 (5%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 MT A L + V +LV N G V R +V P + KA Sbjct: 104 MTSVA-DLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAG-ADGVIVAGEAADPWNAKAIR 161 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +SA + + V A I TA + S Sbjct: 162 ASAGSVFHLP---VVP----ARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILDL 214 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL E I ++ I P+ SLN++ A + ++ Sbjct: 215 PTAWLFGSEAHGLPAEIIGRADERIRIPIYGRAESLNLAAAAAVCLY 261 >gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12] gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium PC4.1] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 264 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 19/164 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANA 64 Q+ +A V++L + + N G V R F LV + S K S+ + Sbjct: 106 EQVLATAPRLVVLLSNVRDPGNAGTVIRGADAFG-ADAVLVTDGSVDVLSPKVVRSTVGS 164 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V V L A YA V Q Sbjct: 165 LFHLPVVTGLDVNETLDALAAHGIRTYAADGVGTTLLPDVDV--------------SQPH 210 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + G E WGL E N ++ P++ SLN++ A + + Sbjct: 211 AWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAMAATICL 254 >gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 287 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + + N+G + R + + R + +S A + VRV + Sbjct: 139 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVVAKASTGAIEHVPVVRVTNLA 198 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ +++ + + + +I G E G++ Sbjct: 199 QTVDELKDRGVWIAGTDAKGSADYRKM--------------DATLPLALIIGSEGKGMSR 244 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + P+ SLN S A L+++E + Sbjct: 245 LLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEA 285 >gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22] Length = 242 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 33/166 (19%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74 ++IL +NIG + R+ F + + L P+D P+E + + +A + + Sbjct: 97 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 154 Query: 75 SNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +NL + I T + F +++ S + ++ Sbjct: 155 TNL------CSYMNYLKKRGFWIIGVTGYAKEYF-------------TDKLISD-KIALV 194 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E G+ + + P++ SLN++ A ++ + Sbjct: 195 FGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 240 >gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 328 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 33/175 (18%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 P+ + L N+G + R++ F DG + RS++ A Sbjct: 174 TPPLFVALDGITDPRNLGAIIRSVSAF---------SGDGVIIPERRSAAVTAGAW---- 220 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-----------VLNERIFSGQN 120 A A + AT N + + KE I L + + Sbjct: 221 ---KTSAGAAARIPVAMAT-----NLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEP 272 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E GL+ + I+S P++ SLN + AV + +++ + Sbjct: 273 LCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASA 327 >gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307] Length = 229 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 21/172 (12%) Query: 18 ILVDP-QLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72 +L++ + N+ + R + + V+ PR S++ + + +R Sbjct: 24 VLMEAVEKPHNLSAILRTCDATGVFEAHAVSLKGRPRTF------NSTAQGSQKWVP-IR 76 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++K+A A+L F+ V + + G E+WGL Sbjct: 77 DHDSVKDAFAEL---------RAKGFRIYGTMLGVNAVDYRSCDFTKPSAFVLGAEKWGL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 T E + + P++ + SLN+S A +++E + + + + Sbjct: 128 TAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQRQAAGLIPTQGEG 179 >gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E] gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii] Length = 248 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 33/166 (19%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74 ++IL +NIG + R+ F + + L P+D P+E + + +A + + Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 160 Query: 75 SNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +NL + I T + F +++ S + ++ Sbjct: 161 TNL------CSYMNYLKKRGFWIIGVTGYAKEYF-------------TDKLISD-KIALV 200 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E G+ + + P++ SLN++ A ++ + Sbjct: 201 FGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 246 >gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2] gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 253 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 21/172 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68 +A+ +++L N+G R ++ P+D A + ++ A + Sbjct: 98 TAQPLLLVLDGVTDPHNLGACLRVAD--GAGAQAVIAPKDHAAGINATVAKVASGAAETV 155 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V + L E + T+ + A + V +I Sbjct: 156 PYFMVTNLARTLNELKERNIWCIGTS--------------DDAEKTIYDVDLTGPVALIL 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E G+ + ++S P+ SLN+S A + ++E + ++ Sbjct: 202 GAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEALRQRRPAAA 253 >gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 258 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65 S ++IL D N+G + R N + L +EK ++ + Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRATMGSILNVNL 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ ++ + LKE NN+ + + + +I + I+F Sbjct: 165 YYLEKSKIINFLKE----------------NNYSIISTYLDKTAIPYNKIELKEKNAIVF 208 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++++ I +++ P+ SLN++ A +++++ E Sbjct: 209 GNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253 >gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans DSM 20603] Length = 326 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 16/155 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKEAI 81 N+G + RA F + + R + A SA A + RV +L+ Sbjct: 183 PRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAARVPVARVTNLVRSLEALK 242 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 F+ + + SV F+ + ++ G E GL+ + Sbjct: 243 KSGCFVVGL---DGDADSSVRD----------LPFAADPLVLVVGSEGKGLSRLVRETCD 289 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 AI + P++ SLN + A + ++E + Sbjct: 290 AIAAIPISTTVESLNAAVAAGITLYEVAAARSEDA 324 >gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L + N G V RA + L + K S+A + + V V S Sbjct: 140 VLATVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGS---LFHVPVVSGV 196 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRE 128 ++ +A+ + + L ER + +FG E Sbjct: 197 PLADVVDAVHERGLTVLAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTAWVFGNE 256 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 WGL ++ L++A++ P+ SLN++ A + ++ Sbjct: 257 AWGLPEKDRELADAVVRVPIRGRAESLNLATAATVCLYASSRAQ 300 >gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01] Length = 246 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R + + + R + + A + VRV + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + T A + + ++ G E G+ Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P++ SLN+S A + ++E + + Sbjct: 206 LTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVRQRLAQ 246 >gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] Length = 316 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 31/166 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R++ F + + R + A +SA A + + Sbjct: 169 VALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQ---- 224 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----------QNVGIIFG 126 AT N +++ E+ L G I+ G Sbjct: 225 ------------AT-----NLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVG 267 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ ++I+S P+ SLN S A +++ E Sbjct: 268 SEGKGLSRLVRESCDSILSIPMAGDVESLNASVAAGVVLAEFARQR 313 >gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6 str. 870] gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2 str. 86/8/59] gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4 str. 292] gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9 str. C68] gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1 str. 9-941] gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19] gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038] gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus curdlanolyticus YK9] Length = 281 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 11/154 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + + N+G + R + + + R + SA A + RV +NL Sbjct: 136 LDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGAAEYVPVARV-TNLA 194 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + I + + AA R +G++ G E G+ Sbjct: 195 QTIE----------TLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRLIRE 244 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN S A ++++E + Sbjct: 245 KCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278 >gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 266 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 19/171 (11%) Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L + K P+I LV P+ NIG + R N+ + + NP+ + SS Sbjct: 108 ENLSFNTKNPLI-LVAEAPEKPGNIGAILRTADAANIDAVIIANPKTDLYNPNIIRSSVG 166 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNV 121 + + ++ + EAI ++F+ N K + E Sbjct: 167 C---LFTNQIATGSTEAI--INFL---------NSKGINIYAAILQESQEYHKQDFTTPT 212 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+N + I P+ S+N+S A ++++E Sbjct: 213 AIVVGTEATGLSNYWRNAAKKNIKIPMQGAIDSMNVSVAAGILIFEAKRQR 263 >gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 258 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 21/165 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65 S ++IL D N+G + R N + L +EK ++ + Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + + LKE NN+ + + + +I + I+F Sbjct: 165 YYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIELKEKNAIVF 208 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++++ I +++ P+ SLN++ A +++++ E Sbjct: 209 GNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253 >gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1] Length = 285 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A I RV +NL Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++IA L +I+ T + +++S + +I G E G++ Sbjct: 199 AQSIATLKENQFWIFGTDM-SGTDYRSWNT--------------QGAIALIIGNEGRGMS 243 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN A L+++E Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282 >gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium sp. SKA34] Length = 244 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 19/159 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N+G R + + R + A + A ++ VRV +NL Sbjct: 100 ILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRV-TNL 158 Query: 78 KE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A+ D +I T A + + I+ G E G+ Sbjct: 159 ARTMRALQDKGVWIVGTAG--------------EATHDIYQSKLTGPLAIVMGAEGEGMR 204 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I P+ SLN+S A + ++E + Sbjct: 205 RLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 186 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 18/180 (10%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++L +P + N G +AR N L L+ P K + D V + Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVEIH 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L+ + T + + + +N +FG+E GL Sbjct: 60 MHDDLEAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + + P++ N++ +V +++ E + + + K + Sbjct: 112 PETFMREYYDRNLRIPMSNNIRCYNLANSVAMVLLEALRQQGFPNMETSHHYENDKLKDD 171 >gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M] gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M] Length = 171 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 47/164 (28%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NA------- 64 I L P+ +NIG V RA LV S + ++ A Sbjct: 30 AIGLHQPKDPKNIGGVLRAA---GCYDAALV-----VLSGRRYQRASTDTQKAFRHLPVI 81 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 D V+ S + A+ + TTA +FK ++ Sbjct: 82 QTDDVL-SAIPVGAVPIAVE-----FTTTATPLTDFKHP-----------------ESAF 118 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E + N+ +A ++ P + +N++ AV ++++ Sbjct: 119 YIFGPEDGSVPNQIVAKCRDVVYVPT--AYC-MNLAAAVNVLLY 159 >gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 279 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F+LT+ L++ + K +SA A + + + NL + + Sbjct: 132 QDPSNLGTILRNAAAFDLTK-VLIHDSVNLYNPKLIRASAGA-IFSNQISLIKNLDQFLN 189 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + A E A L++ N+ IIFG E G++ + + ++ Sbjct: 190 --------AIKKKGLRLVATANHEDATPLDQFDHQLGNI-IIFGNEANGVSEQLLNQADQ 240 Query: 143 IISFPVNPLFP-SLNISQAVLLMVWECMENS 172 I +N + SLN++ + ++++E + Sbjct: 241 TIKIVINNQYAESLNVATSSGIILYELNKLW 271 >gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 242 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + ++ G E Sbjct: 154 VTNLSQTLGKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALVIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii PG50] gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii PG50] Length = 181 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 17/166 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + I+L P++ +N+G + R N +L ++ P ++ S S+ + Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60 Query: 71 VRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + + I ++ +R K + + NV ++FG+ Sbjct: 61 CIRYDDWNDFITKHKNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFGK 108 Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + N P+ SLNI+ V + +E + Sbjct: 109 ESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154 >gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 27/164 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69 IL N+G R + +V P+D + + A I + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHA-VIV-PKDNSVGLTSTVSKVACGAAETIPLFQVTN 158 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +L++ +I T N + + I G E Sbjct: 159 LARTMRHLQDK---GVWIVGTAGEAEGN--------------VYQADLKGPLAIAMGAED 201 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL ++++S P++ SLN+S A + ++E + + Sbjct: 202 KGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEAVRQRL 245 >gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453] Length = 267 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 18/163 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VID 69 G VI+L Q N+G + R + L + K S+ + V++ Sbjct: 113 NGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLE 172 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + S L EA R R + V E E F G I+ G E Sbjct: 173 G-ELLSILPEA------------RERGA-RLVTTMLEGKRSCFEYDFRG-TSWIVIGSEG 217 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ E A+ + I P+ SLN + A ++++E + Sbjct: 218 RGVSPEVAAIVDDAIRIPMPGQAESLNAAMAASVLMYEALRQR 260 >gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] Length = 302 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA----- 80 N+G + R+ ++ LV P P +A S + R+ + A Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPG 195 Query: 81 IADLHFIYATTA---------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 I LH + TT + + + P AA ++ V +IFG E G Sbjct: 196 IDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVD--KVALIFGTEGDG 253 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L+ + +A ++ + P++ SLN++ + + + Sbjct: 254 LSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 288 >gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense] Length = 233 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82 N+G + R + + + + + A ++ V+VF SNL + I Sbjct: 97 PHNLGAILRTVEACGFDGVIMSKKHQVPLNATVSKIACGA---LEYVKVFLVSNLHQTIL 153 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L I T A +I Q++ II G E G+ Sbjct: 154 KLQKQQVLIIGT--------------DSNATQTLTKIPCNQSLAIIVGNEGDGIRYLLKQ 199 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN+S A LM++ Sbjct: 200 KCDLLVKIPMKGKINSLNVSVASALMMY 227 >gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445] gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC 23445] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 181 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 15/165 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + I+L P++ +N+G + R N +L ++ P ++ S S+ + Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60 Query: 71 VRVFSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + I ++ + R K + + NV ++FG+E Sbjct: 61 CIRYDDWNDFITKHQNITLFCLS---RYGQKPISD--------FDFSKINDNVYLVFGKE 109 Query: 129 RWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + N P+ SLNI+ V + +E + Sbjct: 110 STGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154 >gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella tribocorum CIP 105476] Length = 284 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E+ GL++ + + P + SLN++ A +M++E + Sbjct: 219 GPIILLMGNEKQGLSDILTNRCDKLARIPQSGRADSLNLAIATAVMLYEIRRPYLTLEP 277 >gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM 15470] Length = 282 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 12/146 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R + L R + A +++ A + ++ N+++ + L Sbjct: 148 NIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAFAYLPVCQI-GNIRQTLEKL-- 204 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 F +V L + G V I+ G E G++ + + + Sbjct: 205 -------KERGFWAV-GADMDGGDLYQADLKGPLV-IVMGAEGKGISPLTKRMCDFCVRI 255 Query: 147 PVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A L+++E + Sbjct: 256 PMRGKVSSLNVSVAAALLMYEAVRQR 281 >gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa ATCC 25296] Length = 328 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 33/175 (18%) Query: 13 KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 P+ + L N+G + R++ F DG + RS++ A Sbjct: 174 TPPLFVALDGITDPRNLGAIIRSVSAF---------SGDGVIIPERRSAAVTAGAW---- 220 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-----------VLNERIFSGQN 120 A A + AT N + + KE I L + + Sbjct: 221 ---KTSAGAAARIPVAMAT-----NLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEP 272 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E GL+ + I+S P++ SLN + AV + +++ + Sbjct: 273 LCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASA 327 >gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 313 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 30/169 (17%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------- 66 V+ L N+G V R++ F +V P +A +A A Sbjct: 164 PLVVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGTAA 216 Query: 67 ---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V + + L+ + + TA + + L + V I Sbjct: 217 RTPVARATNLTRTLESYKKEGLVVVGLTA-------------DGEVELGDLEALAGPVVI 263 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL+ + + P+ SLN A ++++E Sbjct: 264 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312 >gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S] gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S] Length = 265 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 16/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--A 82 N+G + R L L++ S ++ +S A ++ +A Sbjct: 127 PGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGA-------LFTQSITQARWGE 179 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +H++ R ++ A + ++ G E GL A + Sbjct: 180 FMHWL-------REGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDL 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P+ SLN + A +M +E + Sbjct: 233 LVKMPMLGKADSLNAAVACAVMAYELLNQ 261 >gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 256 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 28/162 (17%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV----FSNLK 78 + N+G + R + + + R+ P+ +SA A ++RV N+ Sbjct: 114 EDPHNLGAMIRTAEAAGFSAVLFPSRREALPTGVVVKASAGA-----ALRVPLIMVGNVS 168 Query: 79 EAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +AI + + A+ R A V +ER+ + ++ G E GL+ Sbjct: 169 QAIRRVKEDLGLWAVGLEAQGR------------ASVFDERLPP--RIALVVGSEGKGLS 214 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 A + I+ P+ SLN+S A +++++ + +++ Sbjct: 215 RVASAACDDILMIPMMGASGSLNVSVAAGIVMYQWYQGNLIG 256 >gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J] Length = 251 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 19/168 (11%) Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 S + P+I IL N G + R + + + R + +S A + Sbjct: 99 ESEENPLIMILDGITDPHNFGSILRTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHL 158 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + +I+ T + + SG + +I Sbjct: 159 PIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPVQKWNTSG-KLALII 203 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+++ + +I+ P++ SLN S A ++++E N + Sbjct: 204 GSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAVLMYEVFRNKL 251 >gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R +T + + R + +S A I Sbjct: 98 ENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T ++ +G + +I G E Sbjct: 158 RVTNLSQTLDKLKESGFWVFGT--------------DMDGTPSHKWNTAG-KLALIIGNE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P++ SLN S A ++++E N + Sbjct: 203 GKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247 >gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 243 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTTG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRV 242 >gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str. Rustic] Length = 240 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 21/149 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F++ + L P+D P+E + + +A + + +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I T + F +++ S + V ++FG E G+ + Sbjct: 166 KHRFWIIGLTGSANDYF-------------TDKLISDKTV-LVFGSEDKGIRRLVAETCD 211 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + P++ SLN+S A ++ + Sbjct: 212 YLAKIPISQRVESLNVSNAASILFHSLHK 240 >gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23] gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23] Length = 118 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P++ S NIS AV ++++ + Sbjct: 21 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 79 >gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a] Length = 218 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P++ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 179 >gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a] gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b] gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1] Length = 218 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P++ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 179 >gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC BAA-548] Length = 273 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 22/155 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 + N+G + R+ + + N + +S A + + +EA Sbjct: 128 EKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIRASTGALFSVPLAEAEN--QEAYD 185 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 ++ + AT + + Q V I+ G E+ GLT + Sbjct: 186 WLKKNNIRTLAAT---------------PHTDQIYTDVDMTQAVAIVVGTEQTGLTELWM 230 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 S+ + P+ SLN++ A ++++E Sbjct: 231 EHSDLPVRIPMLGKIDSLNVATATTILLYEAARQR 265 >gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84] gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84] Length = 286 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 21/167 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + V + Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVP--VVKAT 192 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + + AT +++++ + V ++ G E+ G Sbjct: 193 PEEFLAWKKTAGVS-VVATHLAGAVDYRTIDY-------------KKKPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L + ++A+ P SLN++ A +M++E + + SE Sbjct: 239 LPDALAKEADALARIPQAGRADSLNLAVATAVMLFEARRHLLTLSET 285 >gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205] gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola CNS-205] Length = 372 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 18/169 (10%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A ++ L N+G V R+ F + L R + A +SA A + Sbjct: 218 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVA 277 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +V +NL A+ + A + + S + ++ G Sbjct: 278 QV-TNLTRALKACKDAGFVVVGLDADGETDLYHL-------------EASVGPLVVVVGS 323 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E GL+ + + P+ SLN S A + + E Sbjct: 324 EGRGLSRLVGETCDLTVQIPMVSDVESLNASVAAAVTLAEVARRRAAEG 372 >gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2] gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2] Length = 172 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 47/164 (28%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NA------- 64 I L P+ +NIG V RA LV S + ++ A Sbjct: 31 AIGLHQPKDPKNIGGVLRAA---GCYDAALV-----VLSGRRYQRASTDTQKAFRHLPVI 82 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 D V+ S + A+ + TTA +FK ++ Sbjct: 83 QTDDVL-SAIPVGAVPIAVE-----FTTTATPLTDFKHP-----------------ESAF 119 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E + N+ +A ++ P + +N++ AV ++++ Sbjct: 120 YIFGPEDGSVPNQIVAKCRDVVYVPT--AYC-MNLAAAVNVLLY 160 >gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] Length = 318 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 31/178 (17%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A L S+ ++ L + N+G V R++ F + + R + A +SA A Sbjct: 159 ADALAGSSAPLLVALDNITDPRNLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGA 218 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------ 118 + ATT N +++L + + G Sbjct: 219 AARLP------------------VATTP---NLNRTLLDWAKKGAQIVGLDAGGDVSLDD 257 Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ ++I+S P+ SLN S A +++ E Sbjct: 258 YDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNASVAAGVVLSEFARQR 315 >gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae LPCoLN] Length = 265 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 46/170 (27%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVF 74 + N+G + R + + L NP + SS A + + +F Sbjct: 125 EKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKELF 184 Query: 75 SNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ T+ R + K+ L P ++FG E+ GL Sbjct: 185 K------QEGWTVFVTSPRAETMYFSKNYLGP----------------TALVFGSEKDGL 222 Query: 133 TNE-------EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 T + EIAL P+ SLN++ +V + +E + V+ Sbjct: 223 TEDWFSEDFSEIAL-------PMLGESDSLNLATSVAAVAYEVVRQRWVN 265 >gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029] gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183] gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029] gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39] gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138] gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183] Length = 265 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 46/170 (27%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVF 74 + N+G + R + + L NP + SS A + + +F Sbjct: 125 EKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKELF 184 Query: 75 SNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++ T+ R + K+ L P ++FG E+ GL Sbjct: 185 K------QEGWTVFVTSPRAETMYFSKNYLGP----------------TALVFGSEKDGL 222 Query: 133 TNE-------EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 T + EIAL P+ SLN++ +V + +E + V+ Sbjct: 223 TEDWFSEDFSEIAL-------PMLGESDSLNLATSVAAVAYEVVRQRWVN 265 >gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 325 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 10/160 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + +I+L N+G R+ F + + R + SA A ++ Sbjct: 171 EPNHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIV 230 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + NL A+ L A + L + + Q + ++ G E Sbjct: 231 PVAK-ARNLTHALQQLQAEGAFAIGLDGGGD---------VDLPDLKLADQPLVVVTGSE 280 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ + I+S P++ SLN + A + +++ Sbjct: 281 GKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320 >gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402] Length = 241 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 57/169 (33%), Gaps = 17/169 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + +++L + N+G + R + + + R + S A Sbjct: 84 TIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAID 143 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +V + L++ ++ + + + ++ I Sbjct: 144 HVKVAQVTNLTRTLEDLKKRSFWVVGC---DLDKSQDYRQVDYNMPLV-----------I 189 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E +G++ + + P+ SLN S A +++++ + Sbjct: 190 VIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYNSR 238 >gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1] gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1] Length = 271 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 17/165 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRV 73 I L Q N+G + R + + + K S+ + +I + + Sbjct: 118 IALDRIQDPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDL 177 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L E + T + + K A + I+ G E G++ Sbjct: 178 IKTLIELKEKGGKVVTTHLKAK---KPYYDVNYMACTI-----------IVMGSEDEGVS 223 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 E + +S+ ++ P+ SLN++ A +MV+E ++ I Sbjct: 224 KEIVRISDELVKIPMPGSAESLNVAIAHGIMVFEAVKQRIKPVPT 268 >gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940] gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940] Length = 270 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 25/168 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L ENIG + R ++ A + A + V Sbjct: 114 VVVLEGVGDHENIGAIFRNAAGMDVD---------------AVLLGSGAADPLYRRSVRV 158 Query: 76 NLKEAIA--DLHFIYATTA--------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + H T R+ N L P A+ L + + + V ++ Sbjct: 159 SMGHVLRLPFAHLDGGYTTWQRSLQVLRDANFRLVSLTPHPEAVHLAQALHGAEKVALLV 218 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E GLT + ++ P+ P SLN++ + + +E + I Sbjct: 219 GAEGPGLTEHAMKATDVRARIPMAPGTDSLNVATSAAIAFYERQRSRI 266 >gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 257 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 18/151 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKE 79 Q N+G + R + FN+ Q + N + K +S A I+ +R + L Sbjct: 122 QDPGNLGTILRTCFAFNIKQ-VIFNNCVDLYNPKTIKASMGAIFKINFLRFNDSKLALNF 180 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + ++ AT +L + AI LNE I Q ++ G E GL I Sbjct: 181 LLKNKFYLIAT----------ILD--KNAISLNE-ITIKQKYCLMVGNEGHGLVQTFIDH 227 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ +N SLN++ A + ++E + Sbjct: 228 AHIKTMIKMNQT-ESLNVAVAAAIFLYELNK 257 >gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 244 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 15/167 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L ++IL N+G R + +V P+D + A + A Sbjct: 90 LAGKENPLLLILDGVTDPHNLGACLRNADAAGA--IAVVVPKDRSAQLNATASKVACGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ VRV + A V EA + +G + I+ Sbjct: 148 EIVPLVRVT----------NLARTMRALQEKGVWIVGTAGEATHDIYHSKLTG-PLAIVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G+ + +I P+ SLN+S A + ++E + Sbjct: 197 GAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243 >gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson] gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson] Length = 360 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 15/169 (8%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L+N + L + N+G + R+ +F + + L +P R++ A+ Sbjct: 205 LKNPLATDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEH 264 Query: 67 VID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + F ++ + + TT+ ++ + + ++ Sbjct: 265 IKAINADDFLSVLDIFRQAGYTIVTTSSHKGT-------------ALAQAKLPAKIVLVL 311 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +ER GL++ + IS SLN+S A +++ + + Sbjct: 312 RQERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLADWWRQNQA 360 >gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis Och 149] Length = 257 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 19/164 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P ++L+ N+G + R+ F + ++ R + + + + +A ++ Sbjct: 106 EHPRVMLLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKSASGALERQ 162 Query: 72 RV--FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 NL + A+ + +I E AI + + ++ G Sbjct: 163 PYLRVRNLADTIRALQGMGYIV------LGLDGEARDTLEQAIE----GKRDRPIALVLG 212 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL + ++++ F SLN+S A + ++ Sbjct: 213 AEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALYATRR 256 >gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 242 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745] gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44] gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27] Length = 264 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I L Q N+G + R + + L+ ++K S+ +A + + + Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171 Query: 74 FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + L + + + + TA + + + ++ G E Sbjct: 172 YEDITLSLLHDMVTESNMTTYVTA--LEHSNPYHTVRY-----------AKRTMLVLGNE 218 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+T E + L I P+ SLN+S A L +++ E Sbjct: 219 GNGVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261 >gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 237 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 28/162 (17%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---DSVRVFSNLKEAI 81 N V R F + + +V + + + +AD + + + +KE Sbjct: 59 PHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTR--HADKWLTLQQKPDIVTTIKELQ 116 Query: 82 ADLHFIYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A + +YA+ T R + I + ++FG E G++ E Sbjct: 117 AKGYQVYASYLGEGTLRLGD------------------IDVSRPTALLFGNEHSGVSQEA 158 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 I ++A P+ S NIS A L +++ E + + + Sbjct: 159 IRAADATFMIPMYGFVQSFNISVAAALALYDVTERARQQAGE 200 >gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82] Length = 296 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 18/153 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------DSVRVFSNL 77 N+G + R+ + L+ P P +A S I + Sbjct: 151 PTNVGAIFRSAAALGM-DAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + L + A A R++ + E++ S + + I+ G E GL + I Sbjct: 210 MDVLHKLGYKTAAMA-LRDDSVCIDD---------EKMMSEEKLAIVLGTEGDGLADHTI 259 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 A + + P+ SLN++ A + W+ Sbjct: 260 ADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292 >gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330] gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365] gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457] gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3 str. Tulya] gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5 str. 513] gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3 str. 686] gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M163/99/10] gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis B2/94] gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M644/93/1] gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M13/05/1] gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis M292/94/1] gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae 5K33] gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis bv. 3 str. Ether] gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti M490/95/1] gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94] gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99] gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94] gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99] gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330] gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC 23365] gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis ATCC 23457] gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM 4915] gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94] gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1] gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1] gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99] gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1] gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1] Length = 286 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254] Length = 256 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +G V+IL D Q N G + R M N L L + K ++ + ++ Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ + + L+ + N+ + V E+I +N IFG E Sbjct: 162 --IIYETPENIVKFLN---------KKNYLKIATALHEDSVSYEKIELRKNNAFIFGHEG 210 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+++ I S+ P+ SLN+S A + +++ E Sbjct: 211 GGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLYKMRE 251 >gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae] Length = 177 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L +P++ N + R + +L ++ P + K S A + D V Sbjct: 4 IVLFEPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLNPKYLSRPAAGRLLSDIEHEVHD 62 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + D + Y T R K+ + + + + ++FG+E G+ Sbjct: 63 SYSDFYNKYKDKNIYYIT----RYGLKTYTD-----VNFKKEYEDNEEIWLMFGKESTGI 113 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ S+N++ V ++ +E M Sbjct: 114 DKQVLHNNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQ 153 >gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733] Length = 286 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + G ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT--------------DMIGTNFQKWNAKG-SIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec] gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec] Length = 386 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G V+ L N+G V R+ F + + + R + A +SA A + R Sbjct: 231 PGLVVALDGVTDPRNLGAVVRSAAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVAR 290 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+ F+ A + + L+E + + ++ G E Sbjct: 291 AVNLTRTLRSFAESGLFVVGLAA-------------DGEVSLDELQVATDPLVLVIGSEG 337 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ + + P+ SLN A + + E Sbjct: 338 KGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIALSEI 376 >gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624] Length = 249 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS---NLKE 79 N+G R ++ P+D A + ++ A + V + L E Sbjct: 111 PHNLGACLRVADGAGAH--AVIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + T+ + A + ++ G E G+ Sbjct: 169 LKERNIWCIGTS--------------DDAPQTLYQSDLKGPTALVLGAEGEGMRQLTRKT 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +A++S P+ SLN+S A + ++E + Sbjct: 215 CDALVSIPMKGGVESLNVSVASGVCLYEALRQR 247 >gi|145297940|ref|YP_001140781.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850712|gb|ABO89033.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp. salmonicida A449] Length = 169 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 27/169 (15%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P +P ++++ I LV+P+ EN+G V RA + ++ R E AR + Sbjct: 13 NPQSPT-EDASPYCCIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFA 67 Query: 62 ANADCVIDSVRVFSNLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 D+ ++ + EA+ D T ++ E A L + + Sbjct: 68 T------DTKQMVDKIPLLGVEALLDFVPTGCT--------PVLVDLIEGATSLPDYVHP 113 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + IFG E L A +I P +N++ +V ++++ Sbjct: 114 -ERAFYIFGPEDGTLDPARFAAVKEVIYVPTLGC---MNLAASVNVILY 158 >gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 20/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + R + +SA A +V Sbjct: 98 IILDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNI 157 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E + F+ A + + +G++ G E G+ Sbjct: 158 VRTIEELKEKGIWFVCA----------------DMGGETMYDLDLTGPMGLVIGNEGEGV 201 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + S P+ SLN S A ++ +E + + + K Sbjct: 202 SRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLAKAGK 247 >gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 249 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 +IL + N+G + R + + + R + +S A + RV Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + ++E +++ T + A R + V +I G E G++ Sbjct: 163 VNIVEELKKRNVWVFGT---------------DMAGDDYRRWDANGAVALIIGNEGRGIS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 PLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQ 241 >gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 302 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKAR-SSSANADCVIDSV 71 VI++ N + R + + +++P+ E A + + Sbjct: 6 VIVVERCTNDHNYSAILRTAEALGVQHVYIISPKTINSTLVDEAATEWLTVHE------- 58 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + KE I T R+ N V + A L E Q V I+FG E G Sbjct: 59 --FDDTKECIE--------TLRSENREIWVTDLSQVASCLTEEGI--QKVAIVFGTEAVG 106 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 T E + ++ + P+ SLN+S A L+V + + +++ Sbjct: 107 CTAEMLNAADLRVYLPLRGFADSLNLSVATALVVHQMFVLDPTLAGGMSEDER 159 >gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura] gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura] Length = 405 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 26/183 (14%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +L + ++ + + N+G + R +Q+ + KA Sbjct: 228 EQERLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCG 287 Query: 64 ADCVIDSVRVFSNL----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 V + ++ +A D H A + + + + + + A + Sbjct: 288 GQF---RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQI--- 341 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWE 167 G + +I G E G++ E + N + P+ SLN++ A+ L+++E Sbjct: 342 ----GSHNLLIIGGESHGVSEEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFE 397 Query: 168 CME 170 Sbjct: 398 LRR 400 >gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H] gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H] Length = 264 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 27/148 (18%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IAD 83 NIG + R+ F ++++ +V+ +E I ++ FSN+KE +A+ Sbjct: 40 NIGSIVRSCVAFGVSKIFVVS---RKRNEINFFGQMGTCKYI-TIEYFSNMKELRIHLAN 95 Query: 84 LH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +YA +R AI + F ++ +FG E G+ +E ++ + Sbjct: 96 NNILLYACEITDR------------AIAVTRTPFVNKDTAFLFGNEGTGINDETLSYCDK 143 Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166 II P + SLN+S + +++ Sbjct: 144 IIYIP---QYGNGTCSLNVSVSCAIILH 168 >gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15] Length = 286 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 IQAVQQLKEIGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 250 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI+ VD N G + R + L + K+ +SA + I ++ V Sbjct: 100 VIVAVDISEPGNAGTLIRVADAMGADAVVLAGNSVDPFNGKSLRASAGS---IFNIPVVP 156 Query: 76 --NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ ADL A A + S+ FG E GL Sbjct: 157 EGDVGAIAADLAQTGVALLATTLDGDLSLD---------EADAVLAGPCAWFFGNEAHGL 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 AL+ I+ P+ SLN++ A + ++ Sbjct: 208 DGATAALATHRINIPMRGGAESLNLASAASICLY 241 >gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251 2'-o-methyltransferase) [Cupriavidus taiwanensis LMG 19424] gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 21/169 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 +++L N+G R ++ P+D A + ++ A + Sbjct: 95 TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPY 152 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T + + I+ G Sbjct: 153 ITVTNLARTLRELQERGIWVIGTADGTEKSLYDIDF--------------KGPTAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G+ + ++ P+ SLN+S A + ++E + + Sbjct: 199 EGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247 >gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia K279a] Length = 277 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 3 PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P A L + +GPV+ L V N G + R+ +F + L L S A Sbjct: 116 PLAQWLADLEQGPVLALWLDGVG--NPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAA 173 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + + V++ +A+A L + A V R Sbjct: 174 RVAEGGAESVPLVQLPET-AQAMAQLRSAGFGLAATLVEGGDDVF-----------RASL 221 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + G E G+ + +S P + SLN++ A +++ + Sbjct: 222 PERLVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLLAQWASRR 276 >gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter diaphorus 4H-3-7-5] Length = 244 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 25/153 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R + + + P+ G + A +SA A I +V ++K+AI Sbjct: 109 NFGAIIRTAECTGVHGIII--PKKGGAPVNGVAIKTSAGAAFNIPIAKV-DHIKDAIYYL 165 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + AT F++ I+ GRE G++ + + Sbjct: 166 QGSGVQVVAATEKTETTLFETDFT---------------SPTAIVMGREDSGVSPGVLKI 210 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN+S A ++E + Sbjct: 211 VDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243 >gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008] Length = 264 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G I L Q N+G + R + + L+ ++K S+ +A + + + Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171 Query: 74 FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + L + + + + TA + + + ++ G E Sbjct: 172 YEDITLTLLHDMVTESNMTSYVTA--LEHSNPYHTVRY-----------AKRTMLVLGNE 218 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+T E + L I P+ SLN+S A L +++ E Sbjct: 219 GNGVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261 >gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353] Length = 251 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 25/168 (14%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P IL + + N+G + R N + + R + SA A Sbjct: 100 EAPFFILCDEIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPV 158 Query: 71 VRVFS---NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + + E + D F+ + L + ++G+I Sbjct: 159 ARVTNLSRTIDE-LKDKGMWFVCG----------------DMGGELMYDLNLTGSIGLII 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ + I S P+ SLN S A ++ +E + + Sbjct: 202 GNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGVLAFEIVRQRM 249 >gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1] gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str. Langford 1] Length = 244 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 9/159 (5%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++IL Q N+G + R F + + L + + + S+ + + Sbjct: 93 RSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDKSAPLNHEVTLKSSQGYSLNINTV 152 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 SNL AI T +NR + + + +I G E G+ Sbjct: 153 EVSNLNNAI--------TKLKNRG-YWVYSTEIGPNTKSFKEVEYADKCALIMGSEGKGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + S+ + P+ SLN+S A +++ E + Sbjct: 204 SKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEISDQ 242 >gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192] gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192] Length = 241 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 18/159 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L Q N+G + R+ F + L R + SS+ AD + V V +N Sbjct: 95 VALDHLQDPHNVGAILRSADQFGALGVILPERRAVKDAATISKSSSGADAFVP-VVVETN 153 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 L+ A+ + + V ++E SG V ++ G E GL+ Sbjct: 154 LRRALLHV----------KEAGFWVYGADMEGQPVHEVDLSG-RVCLVLGAEGKGLSRLL 202 Query: 135 -EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EE+ + +++ P S N+S A ++++E Sbjct: 203 REEV---DLLVAIPARGHVDSFNVSVAAGILMYEVRRQQ 238 >gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 256 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 19/177 (10%) Query: 1 MTPYAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57 M P A L+ + P+++L N+GM+ R + +V PR G Sbjct: 91 MRPLAAALEGRTPPSPLLVLDGITTSANVGMILRTATAAGIPG--VVVPRRGVAALDPLV 148 Query: 58 RSSSAN---ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 +SA V+ ++ + + +YA AR S+ Sbjct: 149 VKASAGVAFRAPVLRCATAVEAVESLVEVGYTVYALGARADAESTSLFDTDVP------- 201 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V + G E G++ L +S P+ SLN+S A ++ ++ + Sbjct: 202 ----SRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSAAAAVVCFDLVRR 254 >gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM 15897] gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM 15897] Length = 170 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 13/169 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++LV P + +N G + R T L ++ P ++ + V Sbjct: 4 VVLVHPAIPQNTGNIMRTCAAT-HTPLHIIKPTGFKLNDPRMKRA-----------VMDY 51 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ + + + + + FG E G+ ++ Sbjct: 52 FDHLTFKVYENFEEFEKENPGIYHFFTRYSKKVYSEDDFKQEGEHYLFFGHEHDGIPHDI 111 Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + + + P+ SLN+S V + V+E + V+ Q Sbjct: 112 LKKYIDDCVRIPMYGDSRSLNLSNTVAIGVYEALRQQGYPDLSTVEVQK 160 >gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens DSM 3043] gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 11/167 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q S+ ++IL N G R+ + + + + R + A V Sbjct: 106 QQSSPPLLLILDGVTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADV- 164 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +NL A+ L + V E+A L + +G + ++ G E Sbjct: 165 TPVYQVTNLARAMGRLKT---------HGVWIVGTAGESAQCLYDIDLAG-PLAVVMGAE 214 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G+ + + P+ SLN+S A + ++E + S Sbjct: 215 GKGMRRLTRDACDLLAKLPMAGSVSSLNVSVATGVCLFEAVRQRQSS 261 >gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 330 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 16/167 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++ L N+G V R+ F + + R + SA A + R Sbjct: 175 TPLLVALDQVTDPHNLGAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVAR 234 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L+ + F+ + + + + ++ G E Sbjct: 235 ETNLVRTLETLKKEGCFVVGLDGGGETL-------------MEDLSLADSPLVLVTGAEG 281 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + I S P++ SLN + A + ++E ++ Sbjct: 282 AGLSRLVRETCDVIASIPISQTVESLNAAVATGISLYEVDRLRRAAA 328 >gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium capsulatum ATCC 51196] Length = 283 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 24/176 (13%) Query: 11 SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCV 67 A P ++LV Q N+G + R+ F + L L + W A+ A+A V Sbjct: 125 PAHAPALLLVTASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWN---AKVVRASAGSV 181 Query: 68 IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V +E +A L ++ATTA + + + Q + Sbjct: 182 FRMPVVARCEEEVLARLAAQGVTLFATTA-DGDLP-------------ATQAALTQPCAL 227 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + G E GLT + ++A ++ P SLN + A ++++E S + Sbjct: 228 LIGNEGAGLTPHLLQAADARLAIPTPGPVESLNAAIAGSILLYEASRQRAASQREQ 283 >gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus marinus str. MIT 9202] Length = 326 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N A ++ L N+G + R+ F+ + + R + +A A + Sbjct: 176 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHLQ 235 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV NL A+ L I + + + +I Sbjct: 236 VSRVV-NLNRALEMLKKNGFLIVGLSG--------------DGQLSLSNFSEKVPLVVIV 280 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ + ++S P+ SLN S A + ++ Sbjct: 281 GSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 184 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 38/190 (20%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++L +P + N G +AR N L L+ P K + D V+V Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVKVH 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122 +L + L P + ++++ S +N Sbjct: 60 RHDDLNAFLKS------------------LGPDDEMYLISKFSSKNYVDVDYTDSKKNYY 101 Query: 123 IIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG+E GL + + + P++ N+S +V +++ E + + + Sbjct: 102 FVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMEETH 161 Query: 182 EQNTPATKGE 191 K + Sbjct: 162 HYENDKLKDD 171 >gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans OS217] gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans OS217] Length = 153 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N + L L+ P EK + D V Sbjct: 4 IALYEPEIAPNTGNIIRLCANNG-SHLHLIEPLGFDLEEKKLRRA--GLDYADLANVTRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + +A+A + TT +R P + + ++FG E G Sbjct: 61 KNYDDFLQAMAGKRIMVCTTKGSR--------PHTELEFAKDDV-------LLFGPETRG 105 Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I + + P+ SLN+S +V ++ +E Sbjct: 106 LPMDIINAAPLEQRLRIPMMSSSRSLNLSNSVAIISYEAWRQ 147 >gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099] gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099] Length = 265 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 17/169 (10%) Query: 2 TPYAP-QLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKA 57 TP AP L ++ V++LV +N+G + R F L++ P KA Sbjct: 105 TPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFG-ADAVLMDTTCCDPLYRKA 163 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A I + + A R + L+P+ Sbjct: 164 IRVSVGAALKIPFASFTDT-----SGFTAMLA----ERGFEQLALSPR--GRTDIRDAKP 212 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + G E GL +A + ++ F SLN++ A + + Sbjct: 213 AERLALYLGTEGEGLPERLLARLQT-VRITMSKGFDSLNVAAASAIALH 260 >gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum H04402 065] Length = 257 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N G + R + + R+ + +SA A + +V + Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361] Length = 269 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 12/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L +++L + N+G V R+ + + NP + SS A Sbjct: 113 DLDLPESPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIF 172 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + N K + A + + + G I+ G Sbjct: 173 ------TVPTVA-----CSSQACMNFLKERNIKILTAQLQDSAPYYDSDMRGG-TAIVMG 220 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GLT+ ++A I P+ SLN+S + ++++E + Sbjct: 221 TESTGLTDAWRKAADAHIRIPMLGQLDSLNVSVSAAILMFEAVRQR 266 >gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4] gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens DM4] Length = 269 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 14/175 (8%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P + A P ++ LV +N+G + R F + L KA Sbjct: 107 PPPESVIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A + R S A+ DL A L P +R+ Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDRLDPPAR 215 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL +A + + + P F SLN++ A + + + Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHLAGRRLAG 269 >gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str. 657] gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Bf] gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum Ba4 str. 657] Length = 257 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N G + R + + R+ + +SA A + +V + Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1] Length = 160 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 31/176 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSA----NADCVIDS 70 ++L P++ N G V R L ++L L++P +++ + A V + Sbjct: 4 VVLFQPEIAPNTGNVGRMCA---LTRSRLHLIHPLGFVINDRNLRRAGMDYWRALDVHEH 60 Query: 71 VRVFSNL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +++ A+A TT R + R G G++FG E Sbjct: 61 -RDWASFRASAVAPRRLWLFTTKSTR-------------CFWDARFEDGD--GLVFGNEG 104 Query: 130 WGLTN---EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 G EI ++ P NP SLN+S A + +E + + ++ + Sbjct: 105 SGAPEWLHAEIGDEQR-VTIPHANPELRSLNLSTAAGIATYEALRQVGLPTQSRAE 159 >gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54] Length = 295 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 17/170 (10%) Query: 10 NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + + P II+ D Q N+G + R+ + L R A SSA A + Sbjct: 139 DRGEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHM 198 Query: 69 DSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 D +V +L E +++ A + S+ I+ Sbjct: 199 DICQVTNLVKSLAELKKVGAWVFG--AIKDADAVSLFDADLNVP-----------ACIVV 245 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E G+ + +S P+ SLN S A ++++E M S+VS Sbjct: 246 GSEGTGIRPLVRRECDIQLSIPMVGELDSLNSSVAAAVILFEAMRQSLVS 295 >gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC 13950] Length = 281 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + +A S ++ R A Sbjct: 135 ENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYAR---------ATCW 185 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T + + P E+A L E G+ V ++ G E GLT + S+ Sbjct: 186 PAELMTLKENGFRLLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVR 245 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 246 VRVPMSRGTDSLNVATAAALAFYE 269 >gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V + + + Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLTE 302 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 RN +++ + + I+ G+E GL++ + Sbjct: 303 F----------RNAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLNIS A +++ E Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQ 380 >gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114] gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter denitrificans OCh 114] Length = 257 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 25/164 (15%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P ++L+ N+G + R+ F + ++ R + + + + +A ++ Sbjct: 105 AEHPRVLLLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKSASGALER 161 Query: 71 -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122 VR S+ A+ + +I L A E+ G+ V Sbjct: 162 QPYLRVRNLSDTIRALQGMGYIV-------------LGLDGEASDTLEQAIEGKRDRPVA 208 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + ++++ F SLN+S A + ++ Sbjct: 209 LVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALY 252 >gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 249 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 +IL + N+G + R + + + R + +S A + RV Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + ++E +++ T + A R + V +I G E G++ Sbjct: 163 VNIVEELKKRNVWVFGT---------------DMAGDDYRRWDANGAVALIIGNEGRGIS 207 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 PLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQ 241 >gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 188 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 28/175 (16%) Query: 8 LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSAN 63 L P+I+L++ Q N+G R +T L P G S Sbjct: 33 LIEQTDNPLILLLEGVQDPHNLGACLRTASGAGVTALL--APMKGSCGITHTVRDVSCGG 90 Query: 64 ADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 AD V ++ ++ ++ + I T+ R + Sbjct: 91 ADEVPFLKIKNTSQLLRKFRD--QGIQ-IIGTSDR--------------GTEMLYDTDLT 133 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 II G E WGL L + ++S P+ LN+S + + ++E + + Sbjct: 134 GPTCIILGSEGWGLRKVTGDLCDQLVSIPMAGKVDCLNVSVSAGVCLYEAVRQRL 188 >gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6] gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus YJ016] gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio vulnificus CMCP6] gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016] gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio vulnificus MO6-24/O] Length = 247 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 19/173 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L A ++IL N+G R + +V P+D + + A Sbjct: 90 LAKHASPLLLILDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + VRV + A T R V EA + + +G ++ I Sbjct: 148 ETVPLVRVTN------------LARTMRHLQEQGIWIVGTAGEATHDIYQAKLTG-SLAI 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + G E G+ + +I P+ SLN+S A + ++E + + S Sbjct: 195 VMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVRQRLASQ 247 >gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51] gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium hafniense DCB-2] Length = 246 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 12/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + + N+G + R + + + R + +SA A + RV Sbjct: 98 ILVLDEVEDPHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARV-G 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + + DL V + + +G V I+ G E GL+ Sbjct: 157 NLVQTLKDLQKAGC----------WVSGAEAEGTEVYRSDLTGARV-IVIGSEGKGLSRL 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+S P+ SLN S A ++++E + Sbjct: 206 VKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQR 242 >gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 266 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 16/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R L L++ S +A +S A + R + Sbjct: 129 PGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRASMGAVFTQGMAQARWDEFVPWLRG 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + R+ ++ I+ G E GL A + Sbjct: 189 GPGQLVAASLRDAVPYRG--------------AAYQAPCFILVGNESQGLPEAYEAECDL 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P+ SLN + A ++ +E + + Sbjct: 235 RVTMPMKGRADSLNAAVAGAVLAYEVLAS 263 >gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9] gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9] gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus thermophilus ND03] Length = 247 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 19/165 (11%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R +T + + R + +S A I Sbjct: 98 ENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV + L + +++ T + + + + + +I G E Sbjct: 158 RVTNLSQTLDKLKEAGFWVFGT---------------DMDGTASHKWNTAGKLALIIGNE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +I+ P+ SLN S A ++++E N + Sbjct: 203 GKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLMYEVYRNRL 247 >gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614] gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp. JS614] Length = 314 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++ A ++ L N+G V R+ F + + R + A +SA A Sbjct: 158 AAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAA 217 Query: 67 VIDSVRVFSNLKE--AI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + +++ A A + A + + L + + Sbjct: 218 RLPVAQTVNLVRQLKAYQEAGC-MVVGLAA-DGDVSLPDLD------------LADGPLV 263 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL+ + ++S P+ SLN A + ++ E Sbjct: 264 VVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEAR 313 >gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 12/146 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L+ S K S ++ + VR+ A Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRM------AKE 172 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D A+ + S+L +A ++ +I + + +I G E G+++E + ++ Sbjct: 173 DCF------AQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADK 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 ++ + SLN++ A ++++ Sbjct: 227 LVHIDMPGQAESLNVAVAAGILMFSL 252 >gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4] Length = 285 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L + N+G + R + + R + +S A + RV +N Sbjct: 139 ILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVPVARV-TN 197 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +AI +L ++Y T ++ ++ L +G++ G E G+ Sbjct: 198 LVQAIKELKERGLWLYGTDMEGQDY-------RQWETTL--------PIGLVMGNEGKGI 242 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +++ P+ SLN S A L+++E Sbjct: 243 SRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGR 282 >gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. ND132] gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio desulfuricans ND132] Length = 253 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%) Query: 2 TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 TP L+ + + P ++ L Q N+G++AR ++ L + + A Sbjct: 89 TPLEQLLEEALQAPLPLIVALDQVQDTGNVGVLARTVYALGGAGLIVCQHHGAYIGAGAV 148 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 SSA A + +V NL A+ D + + + LAP + + Sbjct: 149 RSSAGALNKLPVAKV-GNLANAMKDCV------NYDYTLYCARLAPDSDNVYTADLQTP- 200 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +I G E G+ + + P F SLN++QA ++V E Sbjct: 201 --AVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVAQAGAIIVSEFARR 251 >gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor obsidiansis OB47] Length = 270 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +R Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + ++ + ++ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKVVPDKKFCVVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270 >gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana DSM 4359] Length = 216 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ ++IL Q N+G + R + + P+D +A V Sbjct: 58 LESKTPPLIVILDQIQDPHNLGAIVRTSVGAGANGIII--PKDKSVKVTETVVKVSAGTV 115 Query: 68 I-DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + +NL I +L + V A + E F+ +FG Sbjct: 116 FRAKIAIVTNLARTIEEL----------KERGVWVYASDVNGTPIYEEDFT-LPTAFVFG 164 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + +++ P+ SLN+S +V ++++E + Sbjct: 165 NEGEGIRRLVKEKCDRVLTIPMENDIDSLNVSVSVGIVLFEAVRQR 210 >gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51] gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 285 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 12/159 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL Q N G + R +TQ+ L + K S+ A ++ Sbjct: 139 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHCQP- 197 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +E + R++ V L E F+ Q + ++ G E G + Sbjct: 198 EEILKVC----------RSHKIPVFVGDAEGTDLYETHFA-QPMALVVGNEGNGPSAAFR 246 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ P++ SLN++ A ++++E ++ Sbjct: 247 GPGVKRITIPMSHQVESLNVAMATGIILYEVRRRMTSTT 285 >gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland] gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. Langeland] gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum F str. 230613] Length = 257 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N G + R + + R+ + +SA A + +V + Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4] Length = 166 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 15/148 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL-- 84 NIG + R F + ++ + K +S + I ++E I +L Sbjct: 29 NIGSLFRTADAFGVEKIIFCGSK-IPLGRKMTKTSRTTEKFIKYQER-ETVEEVIIELKK 86 Query: 85 -HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 ++ +N K + + + + + I+ G E +G++N + ++AI Sbjct: 87 SNYSI-LALEITDNSKPIHTFN---------VPTKKPIAIVIGDENFGISNTALKQTDAI 136 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171 I + S+N+ QA + ++E + Sbjct: 137 IHIDMFGQNSSMNVVQATTVALYEITKQ 164 >gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia coli [Photorhabdus asymbiotica] Length = 338 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 NIG + R+ +F + + L + R++ A+ + ID+ + + L + Sbjct: 200 PHNIGAIMRSCAHFGVQGVVLQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRK 259 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ + + + ++ G ER GL++ + Sbjct: 260 AGYTIVTTSS-------------HKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDM 306 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + L SLN+S A +M+ E Sbjct: 307 SLFVGGTGLVESLNVSVATGIMLAEWWRQ 335 >gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16] gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16] Length = 247 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 21/169 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 +++L N+G R ++ P+D A + ++ A + Sbjct: 95 TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPY 152 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T + + I+ G Sbjct: 153 ITVTNLARTLRELQERGIWVIGTADGTEKSLYDIDF--------------KGPTAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G+ + ++ P+ SLN+S A + ++E + + Sbjct: 199 EGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247 >gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris BisA53] Length = 153 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 25/170 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73 I L P + +N G + R ++ + ++ P S++ + +D V Sbjct: 2 RIALFQPDIPQNTGTILRLCACLDV-EAHIIEPAGFPVSDRNFRRA--GMDYLDQVSLTR 58 Query: 74 FSN---LKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + ++ D I TT + F+ AP + ++ GRE Sbjct: 59 HDSWTKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDV---------------LMLGRE 103 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 G+ +E A+++A ++ PV P SLNI+ A ++V E + ++ E+ Sbjct: 104 SAGVPDEVAAVADARLAIPVKPGLRSLNIAVAAAMVVGEALRQTVWQGER 153 >gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 12/146 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L+ S K S ++ + VR+ A Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRM------AKE 172 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D A+ + S+L +A ++ +I + + +I G E G+++E + ++ Sbjct: 173 DCF------AQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADK 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 ++ + SLN++ A ++++ Sbjct: 227 LVHIDMPGQAESLNVAVAAGILMFSL 252 >gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 268 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G RA + LV+P P ++ S + RV ++ A+ L Sbjct: 133 NVGAGFRAAAALGV-DAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRV-ASWPGALDQL- 189 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAII 144 R + A + +I L+E + +IFG E GL+ + ++ + Sbjct: 190 -------REHGFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTV 242 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 P+ SLN++ + + + Sbjct: 243 KIPMAGGVDSLNVASSAAVAFY 264 >gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7] Length = 288 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L + N+G + R + + R + +S A + RV +N Sbjct: 142 ILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVAVARV-TN 200 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L +AI +L ++Y T ++ ++ L +G++ G E G+ Sbjct: 201 LVQAIKELKERGLWLYGTDMEGQDY-------RQWETTL--------PIGLVMGNEGKGI 245 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +I+ P+ SLN S A L+++E Sbjct: 246 SRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGR 285 >gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 310 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 15/156 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75 +L N+G + R+ F L ++ + A ++ VR Sbjct: 163 VLDQVTDPHNVGAILRSATAFAADGLI---TTSRHSPRESGVLAKAASGALEHVRQIEVR 219 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL E + R + E+ G+ + ++ G E GL + Sbjct: 220 NLAETLE----------RLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQK 269 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 A + + + SLN+S A + ++ Sbjct: 270 TRATCDVLARLEMPGAIHSLNVSNAAAVALYAIRRR 305 >gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC 33656] gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629] Length = 255 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 28/169 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + R + +SA A +V + Sbjct: 106 IIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTN 165 Query: 76 ---NLKEAIA-DLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +KE + F+ A TT + N + G++ G Sbjct: 166 ISNTIKELKEKGMWFVCADMGGTTMYDLNLTGPI--------------------GLVIGN 205 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G++ + S P+ SLN S A ++ +E + + S Sbjct: 206 EGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQRLKSG 254 >gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174] Length = 258 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L K +++L D Q N G + R ++ + L + K ++ + Sbjct: 101 EDLLKEEKPLLMVLEDLQDPGNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSV 160 Query: 66 CVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I V +LK+ + R LA +R Sbjct: 161 YRIPFFYVEDVVSLKQKLQG-----------RGIR--FLAAHLQGKNSYDRESYEDGTAF 207 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT++ ++ +I P+ SLN + A ++++E Sbjct: 208 LIGNEGKGLTDQAADAADCLIRIPMCGQVESLNAAMAAGILMYEAARQR 256 >gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 181 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 19/167 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69 + + I+L +P++ +N+G + R N +L ++ P ++ S SAN +D Sbjct: 2 NKRKINIVLYEPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 70 SVRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +R + + + I ++ +R K + + NV ++FG Sbjct: 61 CIR-YDDWNDFITKHPNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFG 107 Query: 127 RERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E G+ + N P+ SLNI+ V + +E + Sbjct: 108 KESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154 >gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 251 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 25/156 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAI--- 81 N+G + R + + L P+ G S E +SA A + +V NL +AI Sbjct: 113 NVGAIIRTAECTGVNGILL--PKQGSASIGEDMVKTSAGAIFNLPLCKV-DNLIDAIYYL 169 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + AT E A L + + I+ G E G++ + + Sbjct: 170 QGSGIKVLGAT---------------EKASSLLYDFSLSEPLAIVMGAEDTGISKGVLKV 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P+ SLN+S A ++E + +++ Sbjct: 215 LDEKAKLPLQGETSSLNVSVACGAFLYEVVRQRLMN 250 >gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM 20712] Length = 223 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 25/166 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------ 68 ++L D N V R+ + + + L+ R+ + + + S A + Sbjct: 34 VTVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRNSY--DMTSTVSQGARDWLSIHRHK 91 Query: 69 ---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + + + + A+ + I ATT P I +++ + F Sbjct: 92 ELENNTQ--ATIDQLRAEGYRILATT------------PHANDIFVDDIDLEKGKMAFFF 137 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL++ I ++ + P+ SLN+S + ++ Sbjct: 138 GTELTGLSDLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRR 183 >gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 268 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 21/159 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R + + L + K SSA S V + Sbjct: 115 VLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAG--EWFRSPLVVESD 172 Query: 78 KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ A AT + + + I+ G E GL Sbjct: 173 LSALVKKYQAQGVKAIATLPTATKSHWEIDFTR--------------PTLILLGNEGAGL 218 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + AL++ + P+ SLN++ A ++++E Sbjct: 219 SPQLAALADETVKIPLFGGVESLNVAIATAVILYEARRQ 257 >gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 129 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%) Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 + LV P +K + ++++ N++ +ADL A+ + + Sbjct: 1 MHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNIELCLADLK------AKGVEHVFPLT 54 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQ 159 + + V ++ G E GL E + L I P+ SLN+S Sbjct: 55 T---KGSATPHTVDLNRPVALLMGPETRGLP-EHVRLMFPQEQWIRLPMAENSRSLNLSN 110 Query: 160 AVLLMVWECMENS 172 A ++V+E Sbjct: 111 ATAVIVYEAWRQQ 123 >gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii CaD3] Length = 248 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 Q ++ G E GL E + + ++ P+ SLN+S ++++E M +V Sbjct: 193 QPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQRLV 248 >gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 22/155 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN--ADCVIDSVRVFSNLK 78 Q N+G + R+ ++P D W + R+ A +++S + Sbjct: 125 QDPGNLGSILRSAAAAGC-DAVFMSPGCADAWSPKVLRAGMGGHFALSILESADL----- 178 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 AT +LA A + G E GL+ E + Sbjct: 179 -------LKVAT-----GFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLT 226 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN + A + ++E + Sbjct: 227 AAQQHFIIPMQGKIESLNAAAATAVCLFEASRQRL 261 >gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6] gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6] Length = 250 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 10/155 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +NIG + R + + + R + ++S+ A + V + NL + IA Sbjct: 106 QDPQNIGTLLRTAEVVGVHGVAIPGRRAAEITPAVVNASSGATEHL-RVVLVGNLAQTIA 164 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L R V + + + ++ G E GL + Sbjct: 165 TLQ---------REGVWVVGLEDDEQAQDLDAADLNLPLALVVGAEGPGLARLVRERCDF 215 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ P+ SLN S A + ++ +E Sbjct: 216 LVRLPMAGQIASLNASVAGSITLYNAWRQRKKVAE 250 >gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324 Length = 309 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S ++ L + N+G + R++ F+ + + R + A +SA A I Sbjct: 156 DSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIP 215 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +NL A+ ++A + V+ + + + ++ G E Sbjct: 216 VAR-ATNLTRALK----VWA------DQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEG 264 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S AV +++ E Sbjct: 265 KGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 307 >gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sulfurreducens PCA] gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter sulfurreducens KN400] Length = 245 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 11/161 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +++L Q N+G + R+ + + R + SA A I + Sbjct: 95 PGLILVLDGIQDPHNLGALIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQ 154 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +N+ +A+ L F + AA L +G NV I+ G E G+ Sbjct: 155 V-TNVVQALETL---------KEEGFWAFGTADSAASSLYSHDLTG-NVVIVIGGEGEGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +++ P+ SLN S A ++++E + + Sbjct: 204 RPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEVVRQRL 244 >gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus proteolyticus MRP] Length = 239 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+++L+ N G + R+ + + R S ++A A + V Sbjct: 90 EAPLLVLLDGITDPRNFGAIVRSAEVLGAHGVVVEERRSAPLSAVVAKTAAGATAYLPVV 149 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +V NL I +L N A EAA L ER V ++ G E G Sbjct: 150 QV-KNLPRFIEEL---------KDRNVWVYGAAGEAAQPL-ERTDLSGPVALVIGSEGDG 198 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L + ++S PV SLN S A ++++E Sbjct: 199 LRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239 >gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1] gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC] gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Chlamydophila psittaci Cal10] gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC] Length = 265 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 14/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81 + N+G + R + L +P + SS + ++S L + + Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLGTVFTLP---IWSATLDQVL 181 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + V +P+ + E Q + ++FG E+ GLT + + Sbjct: 182 Q----VIL----EEKWQAFVTSPRAKTMYFCE--NYNQPLVLVFGSEKDGLTASWLKGNF 231 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + IS P+ SLN+S AV + +E + + Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVIRQRWEA 265 >gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS223] gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS223] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L N+ + ++IL N+G R + + + P+D A + A Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + A T R V EA L + G ++ I Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-SLAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +++IS P+ SLN+S A + ++E + Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis ZM4] gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ZM4] gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 152 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 14/157 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + N+G + R F + + ++ P S++A + +D ++ Sbjct: 2 RIALFQPDIAGNVGTILRTAACFGVG-VDIIEPCGFAFSDRALKRAG-----MDYAKIAP 55 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + R + VL I L E F ++ ++FG E G + Sbjct: 56 P----VRHNDWNSFLSTRPE---RRVLLTTAGDIPLPEMTFQPDDI-LLFGSESAGAPDF 107 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ F SLNI+ + + + E + + Sbjct: 108 VHQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144 >gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus trichosporium OB3b] Length = 270 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 15/170 (8%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + G V++L N+G + R F + L + + + +++ A ++ Sbjct: 114 ETKSGVVLVLDQVTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGA---LE 170 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + S NL A+ +L + + V+ A E + ++ G Sbjct: 171 HVLIVSVVNLARALQELS----------QSGRLVVGLDSEAPAPLEETRLQNPIALVLGA 220 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E GL + + + SLN+S A + + I SSE Sbjct: 221 EGKGLRRLTRERCDVLARLDMPGPIKSLNVSNACAVALTTLRLKGIASSE 270 >gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 21/171 (12%) Query: 6 PQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSA 62 P L++ GPV++L NIG + R+ +V R+ A + +++ Sbjct: 148 PALEDIVERPGPVLLLDQVTDPRNIGAILRSAAA-FGAAAVIVQDRNAPEETGALAKAAS 206 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A V+ VRV + + + + +L+ F + Sbjct: 207 GALEVVPLVRVVNLSRTIDALKSHGMWTVGL--------------DAGGGILDGASFRQR 252 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V ++ G E GL + I ++ SLN+S A + ++E Sbjct: 253 RVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALYEMSR 303 >gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS185] gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS195] gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS185] gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS195] gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS183] gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica BA175] gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS678] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L N+ + ++IL N+G R + + + P+D A + A Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + A T R V EA L + G + I Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +++IS P+ SLN+S A + ++E + Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON] gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON] Length = 261 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 16/157 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L Q N+G + R + + + K ++ + + V+++ Sbjct: 115 VLDAVQDPGNVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSF---HMPVYNDV 171 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L EA+ +L SVLA + + II G E G++++ Sbjct: 172 PLPEALTEL-----------MERVSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDK 220 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +S + SLN S A ++++E Sbjct: 221 VMDNAAYTVSIGMPGRAESLNASIAAGIIMYEISRRW 257 >gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1] Length = 267 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 29/187 (15%) Query: 2 TPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEK 56 P P + + ++LV + N+G + R + + + P + + Sbjct: 98 APGRPLDELELRPDALVLVAEGIEKPGNVGAMLRTAEACGVDAVVIATPDRAGTDFANPN 157 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIV 110 +S VF+ + A TA R R V P A Sbjct: 158 VVRASKG--------TVFA--------VPVASAPTAEVQEWLRRRGVRSVVTTP--AGTT 199 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 R ++ G E G+T +A ++A + P+ SLN S A ++++E + Sbjct: 200 ELGRADLTGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSLNASIAAAVVLFEAVR 259 Query: 171 NSIVSSE 177 +S Sbjct: 260 QRSGTSA 266 >gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 255 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + + K + + + I+ ++ + Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIKR--D 171 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI D + + + + + +I G E G+++ Sbjct: 172 LADAITDFQ---------DAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTI 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +LS+ + P+ SLN + A +M++ Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length = 285 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 102 LAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 L P E A+ L++ ++ G + + ++ G E GLT + ++ P++ SLN Sbjct: 205 LTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLN 264 Query: 157 ISQAVLLMVWECMENSIVSSE 177 ++ A + ++E + E Sbjct: 265 VATAAAIALYERQRGRMPHGE 285 >gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. MED193] Length = 263 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P +IL+ N+G + R+ F + ++ R + + + + A ++ Sbjct: 110 AEIPRVILLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKTASGALER 166 Query: 71 VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL + I +L N VL A E G+ V ++ Sbjct: 167 QPYLRMRNLADTITELQ----------NMGYVVLGLDGEAEQTIESCLEGRRDLPVALVL 216 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ F SLN+S A + ++ Sbjct: 217 GAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAIALY 257 >gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii DSM 271] Length = 216 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 16/171 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ +++ + N+ + R + + + V+ R ++ + + Sbjct: 14 LEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNRPSIRKKQKTAGGSTRWVQ 73 Query: 68 IDSVRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + NL + + A + +F+S+ + I+ Sbjct: 74 LSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTR--------------PTAIVM 119 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E+ G +++ I+L + I P+ + SLN+S A ++++E + + Sbjct: 120 GAEKLGPSSDTISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQRLAAG 170 >gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 22/165 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-----NLKEAI 81 N+G R F + L K+ SA A + R+ L E + Sbjct: 136 NVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQPFARLPDGQDWLRLAETL 195 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + +P A + + +I G E GL +A + Sbjct: 196 --------------DLRPLAFSP--GASETLDARAAPPRALLILGTEGPGLDAATLARA- 238 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 I P+ F SLN++ A + ++ E + P Sbjct: 239 RPIRIPMAAGFDSLNVATAAGIALYTIARGQGRLGEPRARRGGEP 283 >gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4] gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica PV-4] Length = 154 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 43/171 (25%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I L +P++ N G + R N QL L+ P EK + D RV Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYSDLTRVTRH 60 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 F + A+A + TT +R + +E F +V ++FG E G Sbjct: 61 KDFESFLSAMAGKRIMACTTKGSRPH--------------SEIAFEKDDV-LLFGPETRG 105 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQA-----------VLLMVWECMEN 171 L I S P + L I A V ++ +E Sbjct: 106 LP------MPIIESIPTSQR---LRIPMAASSRSLNLSNSVAIISYEAWRQ 147 >gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis OL] Length = 270 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ Q N+G + R F + + K ++ + + +R Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + ++ + ++ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKVVPDKKFCVVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270 >gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 168 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 10/154 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +++L + N+G + R N+ + P K ++ D + + F Sbjct: 19 VIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEFV-NCEHF 77 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA+ + + + ++AI ++E FSG +FG E G+ Sbjct: 78 DHSLEAVG--------SLKKNGYRVYAVDTIDSAIDVHEAQFSG-KCAFVFGNEALGIQQ 128 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E + + I + S+N+S +++++ Sbjct: 129 ETLEACDEYIRLNAHGRKNSINVSNCAAVVLFQA 162 >gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM 14796] Length = 253 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 14/160 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ ++ P + L Q N+G + R+ F + L + K SSA A Sbjct: 99 PKEKDFGPFPWVYLDKIQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAF 158 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + N + + D+ T+ R + +P+ ++F Sbjct: 159 FKVPFRKR--NFSDIVRDMD----TSLRVFSF-----SPRAKEPFFLH--NYDGRCLLVF 205 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G E G+++E + S + P SLN++ V +++ Sbjct: 206 GNEGRGISSEIESKSYKRVYIPT-QNVESLNVAMCVNIVL 244 >gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92] gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus 525.92] Length = 226 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 20/151 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L NIG + R+ + L +V E +S+ A I Sbjct: 87 VLYGISDVGNIGAITRSAYALGCEGLIVVA--KSINMEGVLRASSGAAYEIPIALFEDGL 144 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L + F TA N N + PK +I G E G+ Sbjct: 145 SLLNELKQSGFCLYATASNGKNVHEMKFDPKR---------------ALIMGSESEGIPQ 189 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + +A + + + + SLN+S A ++ Sbjct: 190 KALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220 >gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS] Length = 141 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +FG E GL + ++ P SLN+S A + ++E + + Sbjct: 77 GPLAFVFGSEGTGLRRLTKETCDILVRIPSLGKIKSLNVSVATGICLYEAVRQRL 131 >gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501] gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501] Length = 237 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 26/153 (16%) Query: 25 GENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVF-SNLKEAIA 82 N+G + R F + +L L +P + K ++ + I VRV +L E + Sbjct: 104 PGNLGTLIRLCDWFGIGEL-LCSPDTVDCYNPKVLQATMGS---IARVRVVYKDLAETLD 159 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWGLTNEEIAL 139 P A + E I Q + ++ G E GL+ Sbjct: 160 ASGL-----------------PVYGASMEGEAIGGEQPLSPGILVMGSESHGLSGPVRDR 202 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P SLN++ A ++++E + Sbjct: 203 LSQTWAIPSFGRAESLNVATAAAILLYEIRRAT 235 >gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1] Length = 285 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 27/172 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FS 75 +L + N+G + R+ + L+ P P +A S I + F Sbjct: 124 VLEEVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFD 182 Query: 76 NLKEAIADLHFIY---------------ATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 L A + RN+ + P+ + Sbjct: 183 TLGLAHNKADHGIWPEFGMGQLHSMGFRTASMALRNDTIDIHDPE---------LKQIDR 233 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +I G E GL E I S+ + P+ SLN++ A + WE S Sbjct: 234 LAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSLNVAAASAVAFWELGRRS 285 >gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa] Length = 240 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 23/150 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNENGSIAKAACGTLELIPIIKV-TNLRSCMNYL 164 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + V ++FG E G+ Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 210 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P++ SLN+S A ++ + Sbjct: 211 DYLAKIPISQRVESLNVSNAASILFHSLHK 240 >gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 3502] gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall] gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. ATCC 19397] gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A str. Hall] gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A3 str. Loch Maree] gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum NCTC 2916] gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum A2 str. Kyoto] Length = 257 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N G + R + + R+ + +SA A + +V + Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis DSM 265] gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM 265] Length = 178 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 10/165 (6%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + K PVI +L + + N+G + R+ + ++ L P ++ ++ AD Sbjct: 17 EYAAAPKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGAD 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + N ++ + DL + L E + + E V ++ Sbjct: 77 ASMPW-EYTDNPQQTLRDL--------KKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLV 127 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ + +A + ++ P + SLN+S A ++++E + Sbjct: 128 GNEVQGIEDNLLAQCDLVLEIPQFGIKHSLNVSVAAGVVLFELVR 172 >gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 240 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 23/150 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNENGSIAKAACGTLELIPIIKV-TNLRSCMNYL 164 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + V ++FG E G+ Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 210 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P++ SLN+S A ++ + Sbjct: 211 DYLAKIPISQRVESLNVSNAASILFHSLHK 240 >gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 251 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL Q NIG + R +F++ + S K ++ + ++ V++ Sbjct: 112 ILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVKL-D 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + ++ + IYA+ N + ++ F+ + + +I G E G++ + Sbjct: 171 DISKLKSEGYKIYASCLEN--------------AISSKSAFTDEKMALILGNESVGISED 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I S+ I + SLN++ A ++++E + Sbjct: 217 LINQSDKKIKIDMTGNAQSLNVATAGAILIYEMCK 251 >gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 262 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + Q N+G + R +T + + + K S+ + + V +L Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFV-YVEDL 173 Query: 78 KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 KEAIA + T A + + S ++ + + G E GL + Sbjct: 174 KEAIAKVKAHGIFTYAAHLDGKNSY-----------DKEDYTKKTAFLIGNEGNGLRKDI 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L++ I P+ SLN + A ++++E Sbjct: 223 ADLADTWIRIPMQGQVESLNAAIATSVLMFETARQR 258 >gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata HTCC2501] Length = 244 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N+G + R ++ L L S +SA A + R +LK+ + Sbjct: 109 NLGAIIRTAECAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARS-PHLKDVVYYLQA 167 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + AT E A + +I G E G+ + L + Sbjct: 168 SGVRLVAAT---------------EKAESTLYEADLTGPLALIMGSEDRGIHPSLLKLCD 212 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A + ++E Sbjct: 213 IQAQLPMQGSIESLNVSVACGVFLFEAQRQR 243 >gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM 2912] Length = 268 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G ++L + N+G + R + + + R +E +SA A + + Sbjct: 116 RPGLFVLLDGIEDPHNLGSILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVI 175 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 RV NL + I A R+ ++ V+ + ++ G E G Sbjct: 176 RV-GNLGQTIL---------ALKRSGYR-VVGADTEGECDYTDVDYRVPTALVIGGEGKG 224 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 L + ++ P+ SLN A ++++E + Sbjct: 225 LGRLVRERCDEVVHIPMAGRVNSLNAGVAAGVLLYEAIRQRSAP 268 >gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC 25840] Length = 303 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +L + P++ +L N+G + R+ F L + + +++ Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH T + P E + L SG + Sbjct: 202 GALELIAHIEV-RNLAEAIEELH-----TLGFQTIGLDSQGPLEMEVTL-----SGNRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] Length = 308 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 102 LAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 L P E A+ L++ ++ G + + ++ G E GLT + ++ P++ SLN Sbjct: 228 LTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLN 287 Query: 157 ISQAVLLMVWECMENSIVSSE 177 ++ A + ++E + E Sbjct: 288 VATAAAIALYERQRGRMPHGE 308 >gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6] Length = 284 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 18/165 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC--V 67 G +IL Q N+G + R+ + + P P + K ++ A Sbjct: 132 PQPGLGLILDAIQDPGNLGTLLRSAEAAGVG-WVVCAPGCADPFAPKVVRAAMGAHFNLP 190 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + ++ +ADL +Y P A Q +I G Sbjct: 191 LRHDLSWEDIGAEVADLPVVY-------AAAADAAMPYYQAD-------WNQPAALIIGS 236 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ +AL+ ++ P+ SLN + A +M++E + Sbjct: 237 EAHGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLFEALRQR 281 >gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 272 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 19/172 (11%) Query: 7 QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 QL P ++ + + N+G + R+ + L + + + +S Sbjct: 115 QLPTPDGSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGTL 174 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 V++ LK + SVLA A L + + Sbjct: 175 FTVPVLE-AEGEETLK--------------WLKERSISVLAATPHARSLYTEVEMTGPLA 219 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 I+ G E+ GL+ + ++ + P+ + SLN++ A L+++E + + Sbjct: 220 IVVGTEQLGLSELWMEHADIQVRIPMMGVADSLNVATATTLLLYEAIRQRAL 271 >gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans OS217] gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans OS217] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 20/172 (11%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 L +S + P ++IL N+G R + + + P+D + + Sbjct: 89 ALLDSTEVPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSAGLTPTVSKVACG 146 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + A T R V EA L + +G + Sbjct: 147 A------AETVPLFQ------VTNLARTMRHLQDRGVWIVGTAGEADGALYQAELTG-PL 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E GL + ++S P+ SLN+S A + ++E + I Sbjct: 194 AIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEAVRQRI 245 >gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 14/151 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ +F + LV S A ++ A+ V + + + Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLTE 302 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 RN +++ + I+ G+E GL++ + Sbjct: 303 F----------RNAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 +S SLNIS A +++ E + Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQNQA 383 >gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5] Length = 218 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R + Sbjct: 68 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 125 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + + AT +++++ K + V ++ G E+ G Sbjct: 126 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 171 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + ++A+ P SLN++ A +M++E + + +E Sbjct: 172 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 217 >gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726] Length = 268 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK------- 78 ENIG + R N+ + L + ++ S V+ F++L+ Sbjct: 122 ENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSMG--HVLR--VPFAHLEGGFTTWQ 177 Query: 79 ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+AD F L P A+ L E + V ++ G E GLT Sbjct: 178 RSLQALADASFTL-----------ISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEH 226 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ P+ P SLN++ A + +E + Sbjct: 227 AMKATDIRARIPMAPGTDSLNVATAAAISFYERQRS 262 >gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor kronotskyensis 2002] Length = 270 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+I + Q N+G + R F + + K ++ + + +R Sbjct: 126 VVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185 Query: 76 N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L + + D F V P + +I + I+ G E G++ Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCIVIGNESEGVS 232 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ I P+ SLN + A ++++E + Sbjct: 233 DSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270 >gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 229 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 21/174 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+ + R+ + + VN P+ S++ + I ++ S+++ A+ Sbjct: 30 EKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFN--STAQGSQKWIP-LKEHSSIEVAVK 86 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + +Y T + + ++ + + G E+WGL+ Sbjct: 87 AIKESGFRLYGT-----HLGGNARDYRDCDFC--------EPTAFVLGAEKWGLSELATP 133 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191 L + I P+ + SLN+S A +++E + + E PA + Sbjct: 134 LMDEGIFIPMCGMVQSLNVSVAAATLLFEALRQRRLAGIAPQAGEGLEPALYQQ 187 >gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100] Length = 238 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 12/170 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L NI V R+ ++ ++ + ++A + AD ++ + Sbjct: 49 AVVLEGIYDRGNISAVMRSAEGLGFGNFHVIETQEKF--KEANRVTQGADKWVEVKKWKK 106 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 AD +N+ V A L+E FSG ++ G ER G+T E Sbjct: 107 T-----ADCVKAL----KNQGYKIYVTHLDANAKPLHEIDFSG-KTALVLGNERDGVTPE 156 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 IA ++ I P+ S NIS A L ++ ++ + N Sbjct: 157 MIAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDRLKRRGTNASLTEE 206 >gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium] Length = 196 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEA 80 N+G + R+ + + L + K SSA + I VF + E Sbjct: 57 SDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSMFYIP---VFEDITIDEV 113 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I T++ + + + I+ G E G+ + E+ Sbjct: 114 KQAGFSIVGTSSHEQRGSRPF-----------TEASLTGKIAIVVGNEAHGMDDAELV-- 160 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P SLN++ A ++ +E Sbjct: 161 DQWITIPHRGRSESLNVAMAATVVCFEVAHQR 192 >gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens 200] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L N+ + ++IL N+G R + + + P+D A + A Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + A T R V EA L + G + I Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +++IS P+ SLN+S A + ++E + Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8] gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 242 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 15/173 (8%) Query: 2 TPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + P+I+L+D Q N+G + R + + P+D Sbjct: 77 YSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIII--PKDKSVKVTETVV 134 Query: 61 SANADCVI-DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +A V + V +NL I +L + + + E F+ Sbjct: 135 KVSAGTVFRARIAVVTNLARTIEEL---------KEKGVWTYAS-DIDGTPIYEEDFT-F 183 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E G+ + +++ P+ SLN+S +V ++++E + Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236 >gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. W3-18-1] gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella putrefaciens CN-32] gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. W3-18-1] gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella putrefaciens CN-32] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L N+ + ++IL N+G R + + + P+D A + A Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + A T R V EA L + G + I Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +++IS P+ SLN+S A + ++E + Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQR 244 >gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus pseudoporcinus SPIN 20026] Length = 248 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 21/166 (12%) Query: 13 KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P+I IL N G + R ++ + + R + +S A + Sbjct: 99 ENPLILILDGLTDPHNFGSILRTADATKVSGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 RV +NL +A+ L +I+ T + + SG + +I G Sbjct: 159 RV-TNLSQALDKLKEAGFWIFGT--------------DMDGTPVQKWNTSG-KLALIIGS 202 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G++ + +I+ P+ SLN A ++++E + + Sbjct: 203 EGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRHKL 248 >gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 16/160 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S +G V++L ++ NIG + R + + LV+ +++ ++ V Sbjct: 116 SRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRG-YVFSL 174 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129 V S +EAIA + R++ ++ K + + + + ++FG E+ Sbjct: 175 PVVLSGREEAIAFI----------RDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEK 224 Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G ++ EE + ++ +S P+ SLN+S ++ + + E Sbjct: 225 GGPSDLFEEASSAS--VSIPMMSQTESLNVSVSLGIALHE 262 >gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS155] gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica OS155] Length = 246 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L N+ + ++IL N+G R + + + P+D A + A Sbjct: 91 LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + A T R V EA L + G + I Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +++IS P+ SLN+S A + ++E + Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus australis ATCC 700641] Length = 242 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q+ N ++IL N+G + R + + + R + +S A Sbjct: 88 QVANQDNPLLLILDGLTDPHNLGSILRTADATQVAGVIIPKHRAVGVTPVVAKTSTGAVE 147 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + +I+ T ++ SG + + Sbjct: 148 HVPIARVTNLSQTLDKLKEAGFWIFGT--------------DMNGTPSHKWNTSG-KLAL 192 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G++ + +I+ P+ SLN S A ++++E N + Sbjct: 193 IIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFRNKL 242 >gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 283 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLK---EA 80 EN+G + R + + L P P R S + V + + + Sbjct: 149 ENLGALFRNAAALGIDGVVL-GPGCSDPLYRRSVRVSMGHVLRVPFAA--VDDWPGGLKL 205 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + D F+ A L P+ ++ L + G+ V ++ G E GLT E I + Sbjct: 206 LQDKGFVVAA-----------LTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAA 254 Query: 141 NAIISFPVNPLFPSLNI 157 + + P++P SLN+ Sbjct: 255 DVAVRIPMSPGVDSLNV 271 >gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a] Length = 218 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGAELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179 >gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis] gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis] Length = 405 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 26/183 (14%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +L + ++ + + N+G + R +Q+ + KA Sbjct: 228 EQERLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCG 287 Query: 64 ADCVIDSVRVFSNL----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 V + ++ +A D H A + + + + + + A + Sbjct: 288 GQF---RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQI--- 341 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWE 167 G + +I G E G++ E + N + P+ SLN++ A+ L+++E Sbjct: 342 ----GTHNLLIIGGESHGVSEEAYSFMNLVGGKGKCVYIPLAAGIDSLNVASALTLLLFE 397 Query: 168 CME 170 Sbjct: 398 LRR 400 >gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08] Length = 279 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 21/153 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERWGLTNEEIA 138 D F A +AP + A+ L+E + + ++ G E GL+ I+ Sbjct: 189 DHGFTVAA-----------MAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWIS 237 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ P+ SLN++ A + +E E Sbjct: 238 QADVVVRIPMAGGVDSLNVAAAAAVACYELREA 270 >gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM 15868] gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM 15868] Length = 228 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 R ++P+ A +L + + + ++FG E G+++E + ++ ++ P+ Sbjct: 110 ERGYKIVAVSPENNATMLPDYKVE-KPIALVFGTEWEGVSDELLDFADETLAIPMYGFTK 168 Query: 154 SLNISQAVLLMVWECMENSIVSS 176 S N+S A + ++E + + S+ Sbjct: 169 SFNVSVAAAICMYELKQKLLNST 191 >gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 235 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 12/142 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R F + L KA S A + R+ EA DL Sbjct: 100 NIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARL-----EAGEDLVG 154 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A VLA A + V +FG E GL ++ +A + Sbjct: 155 ALA------GAGLEVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLAR-TRTVRI 207 Query: 147 PVNPLFPSLNISQAVLLMVWEC 168 P+ F SLN++ +++ Sbjct: 208 PMAGGFDSLNVATTSGIVLHHL 229 >gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 338 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ + ID+ + + L Sbjct: 200 PHNLGGIMRSCAHFGVQGVILQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRK 259 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ + + + ++ G+ER GL++ + Sbjct: 260 AGYTIVTTSS-------------HKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDM 306 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + L SLN+S A +M+ E Sbjct: 307 SLFVGGSGLVESLNVSVATGIMLAEWWRQ 335 >gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN] gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923] gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae] gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923] Length = 278 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S ++ L + N+G + R++ F+ + + R + A +SA A I Sbjct: 125 DSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIP 184 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +NL A+ ++A + V+ + + + ++ G E Sbjct: 185 VAR-ATNLTRALK----VWA------DQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEG 233 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S AV +++ E Sbjct: 234 KGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 276 >gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM 20093] gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM 20093] Length = 222 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 21/157 (13%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 74 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLKDTKLRRA--GLDYHDMAHVVLHPNFE 130 Query: 76 NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +L E++ D I A TA + V P + + E I+FG Sbjct: 131 SLVESMPD-SRIIAFTAHATKLYTEVEYRPNDILLFGPEPGNIPDPTDIMFGPHVA---- 185 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + P+ P SLN++ + ++E Sbjct: 186 -------EQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 215 >gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421] gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421] Length = 265 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 13/156 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ L L K +SA +L +A Sbjct: 122 QDPGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFR-SPPLSVPDLTACVA 180 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS-N 141 DL R VLA A + + G E GL+ E + Sbjct: 181 DLVR--------RGVQ--VLAADAGAGRSLWECDLRRPTAFVLGSEGQGLS-EPLRRCLP 229 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + P+ P SLN++ + L+++E SS Sbjct: 230 ERVGIPLAPGVESLNVAVSGALLLFEAARQRRGSSH 265 >gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus DSM 2876] Length = 245 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 20/162 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 V IL + N+G + R + + R + +SA A +V Sbjct: 100 VFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 159 Query: 75 --SNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + ++E L F+ A + + +G++ G E G Sbjct: 160 LSATIEELKKEGLWFVCA----------------DMGGETMYNLNLTGPIGLVIGNEGEG 203 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + + S P+ SLN S A ++ +E + + Sbjct: 204 VSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVRQRM 245 >gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum intermedium LMG 3301] Length = 303 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A +L P++ +L N+G + R+ F L + + +++ Sbjct: 142 RARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + T + + E SG + Sbjct: 202 GALELISHIEV-RNLAEAIEELHSLGFQTIGLDS----------EGPLEMEATLSGGRIA 250 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665] Length = 329 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 22/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDS 70 +I L N+G + RA F+ +V P R + A +SA A + Sbjct: 176 PPLLIALDGITDPRNLGAIIRAGSAFD-ADGVIV-PERRSVGVTATAWRTSAGAAARVPV 233 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + NL + DLH F+ + V P + + + ++ G Sbjct: 234 AQ-AGNLNTTLVDLHKAGYFVLGL-----DGGGDVCLP--------GLALATEPLVLVVG 279 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ I+S P++ SLN S AV + ++E Sbjct: 280 AEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325 >gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. AS9601] Length = 335 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 19/163 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N A ++ L N+G + R+ F+ + + R + +A A + Sbjct: 185 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHVQ 244 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV NL A+ +L + + + + +I Sbjct: 245 VSRVV-NLNRALEELKKNGFIVVGLSG--------------DGQLSISNFLEKAPLVVIV 289 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E G++ + ++S P+ SLN S A + ++ Sbjct: 290 GSEEKGISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLFHL 332 >gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium] Length = 207 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 71/178 (39%), Gaps = 21/178 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADC 66 K + ++ +P+ NIG + R + + + +++ + P EK++ ++ +A Sbjct: 24 KNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSKATLPDNWQDMREKSKLNAISASA 83 Query: 67 V-IDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V V+ F + + + + T+ + VL + Sbjct: 84 VKWSFVKKFKDSESCLDHLEKNGFVSVV-TSPHTKGRKNVVLHEADYTKYT--------K 134 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + FG E G++ + S ++ P+ + SLN+ + ++++E + + +K Sbjct: 135 LAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEITKQRRIFQDK 192 >gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3] gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi DSS-3] Length = 257 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P +IL+ N+G + R+ + ++ R + + + + A ++ Sbjct: 105 AENPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161 Query: 71 VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIF 125 NL +AI +L VL A E +GQ V ++ Sbjct: 162 QPYLRMRNLADAITELQ----------GMGYLVLGLDGEASETIEAALAGQTDRPVALVL 211 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ F SLN+S A + ++ Sbjct: 212 GAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAAIALY 252 >gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222] gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus denitrificans PD1222] Length = 265 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 16/156 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA- 64 L + ++ L N+G + R+ F + + R P A + +++ A Sbjct: 109 ALSGPGRPLLVALDRVTDPHNVGAILRSAEVFG-ARAVIAPARHSAPETGALAKTASGAL 167 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + L E + + + L R SG+ + Sbjct: 168 ERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELLPEAL-----------RDLSGRAIC 216 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 ++ G E GL + I+ P F SLN+S Sbjct: 217 LVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVS 252 >gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 269 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL+ ++ +I P+ SLN + A ++++E Sbjct: 213 KGTAFLIGNEGNGLSEHLTERADTLIKIPMQGKVESLNAAMASGILMYEAYRQR 266 >gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003] gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus SB 1003] Length = 264 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 20/158 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + V++L N+G + R+ F +V P + + + + A Sbjct: 104 ALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGAR--AVVAP-ARHSAPETGALAKTASG 160 Query: 67 VIDSVRV--FSNLKEA---IADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +NL EA + D+ ++ + E + R Sbjct: 161 ALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAE------MTLAEGLAEVGTR-----P 209 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 V I+ G E GL + A + ++ P F SLN+S Sbjct: 210 VAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVS 247 >gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146] gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 357 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80 N+G + R +F + ++ P A R++ A+ V ID+ + L Sbjct: 219 PHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSATLDTF 276 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + I T++ R + ++ G E GL++ + Sbjct: 277 RRAGYTIVTTSSHKGTTQLH-------------RAVLPAKIVLVVGHEGDGLSDGTLQQG 323 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + IS SLN+S A +M+ E Sbjct: 324 DLSISIGGTGSVESLNVSVATGIMLAEWWRQ 354 >gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 315 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A + ++ L + N+G + R++ F + + R + A +SA A Sbjct: 158 ARARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGA 217 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + R +NL + D + +++ + + ++ ++ Sbjct: 218 AARLPVAR-ATNLTRTLKDWQ----------DKGITIVGLDAGGDTELDNLDGVGDIAVV 266 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ +A++S P+ SLN S A +++ E Sbjct: 267 VGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314 >gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2] gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2] Length = 161 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L P++ EN G ++R FN T L ++ P ++K + D ++ Sbjct: 4 IVLFQPEIPENTGNISRTCVGFNAT-LHMIRPFGFILNDKRMKRA--GLDYWDHLKRKEY 60 Query: 74 --FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +S+ + + ++ T A K + + + + + + +FGRE Sbjct: 61 DDWSDFESQNLVNKNSKVFLITK---------FADKSISNLTKDELTKDEEIFFVFGRET 111 Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 GLT+E + + +N S N+S +V ++ + Sbjct: 112 KGLTSEIMEKYKKFQLKIEMNSNIRSFNLSNSVAIVAF 149 >gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756] gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 258 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 20/163 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L + N+G + R + + R + +SA A +V Sbjct: 112 IVLDGIEDPHNLGAIIRTANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 171 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E + F+ A + + +G +G++ G E G+ Sbjct: 172 VKTMEELKEKGIWFVCA---------------DMDGQSMYDMNLTG-PIGLVVGNEGDGV 215 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + + S P+ SLN S A ++ +E + + Sbjct: 216 SRLVKENCDFVASIPMKGEITSLNASVAGGVLAYEIVRQRLAK 258 >gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 245 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 27/165 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + A + A ++ VRV + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDRSANITATVSKVACGAAEMVPLVRVTN 157 Query: 76 ------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 L+E + + T A + + I+ G E Sbjct: 158 LARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEG 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + +I P+ SLN+S A + ++E + + Sbjct: 201 DGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVRQRLA 245 >gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC 27755] Length = 264 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 13/156 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R +T + + + K S+ A + +L Sbjct: 120 VLDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFC-YVDDL 178 Query: 78 KEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E + + T A + S + + G E GL +E Sbjct: 179 AEEVKQMKEAGICTYAAHLEGKNSYDEEDYR-----------KASAFLIGNEGNGLRDEV 227 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I P+ SLN + A ++ +E Sbjct: 228 ADQAQVYIRIPMKGQVESLNAAVATAILTFEAARQR 263 >gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559] Length = 238 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + + ++ ++ ++ + A I+ + +++++I Sbjct: 57 HNTSAVIRSCDVFGVQNVHIIEEQNAKKIDREIAMGAQKWVTINR---YHSVQDSIK--- 110 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + + + +P + L + + + I FG E+ GL+ E + +++ I Sbjct: 111 -----SLKEKGYQIVATSPHIESHNLRDFDVT-KPSAIFFGTEKDGLSEEVLNQADSYIK 164 Query: 146 FPVNPLFPSLNISQAVLLMV 165 P+ SLNIS + +++ Sbjct: 165 IPMVGFTESLNISVSAAIIL 184 >gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex] Length = 250 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 13/149 (8%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCV 67 ++ A ++IL +N+G + R+ F L+ R P E S++ A Sbjct: 100 RSPAAKRLVILDQITDPQNVGAILRSACAFGFDG-VLMTERHSPPLEGVVGKSASGA--- 155 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ + + A L + F +E + L++ G ++ ++ G Sbjct: 156 LEKIPLLMTANVA-QGLRLL------KTEGFWCWGLSEEGTLPLSQLPCEG-SLALVLGA 207 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLN 156 E GL L + ++ P +P FP+LN Sbjct: 208 EGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236 >gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 181 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69 + + I+L P++ +N+G + R N +L ++ P ++ S SAN +D Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 70 SVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +R + + + I ++ + R K + + NV ++FG+ Sbjct: 61 CIR-YDDWNDFITKHPNVTLFCLS---RYGQKPISD--------FDFSKINDNVYLVFGK 108 Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + N P+ SLNI+ V + +E + Sbjct: 109 ESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154 >gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40] Length = 218 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179 >gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805] Length = 218 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179 >gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31] gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7] gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a] gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a] gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a] gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26] Length = 218 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + + I FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179 >gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus str. Jelinkova 176] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 29/170 (17%) Query: 13 KGPVI-ILVDPQLGENIGMVAR---AMWNFNLTQLRLVNP--RDGWPSEKARSSSANADC 66 + P+I +L N G + R A + V P R + +S A Sbjct: 99 ENPLILVLDGLTDPHNFGSILRTADATKVCGV-----VIPKHRAVGVTPVVAKTSTGAVE 153 Query: 67 VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV + L + +I+ T + + SG+ V + Sbjct: 154 HVPIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPVQKWNTSGKLV-L 198 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E G++ + +I+ P++ SLN A ++++E + + Sbjct: 199 IIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRHKL 248 >gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 273 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 25/166 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----------AD 65 ++IL + N+G + R+ N+ + L ++ S D Sbjct: 122 IVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGD 181 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + ++ LKE + + A T R+ + +E + S + II Sbjct: 182 DTWPADGMYR-LKE-LGYKNVAMALTDRS-------------VSIDDEALMSEDKLAIIL 226 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GL E I + + P+ SLN++ A + W+ + Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272 >gi|313619703|gb|EFR91323.1| RNA methyltransferase [Listeria innocua FSL S4-378] Length = 104 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172 +N +FG+E GL +E+ +N + P+ SLN+S ++ +E + Sbjct: 30 PNKNYFFVFGKETTGLP-DELLQANEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 86 >gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces hygroscopicus ATCC 53653] gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces himastatinicus ATCC 53653] Length = 317 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 10/169 (5%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A + ++ L N+G V R++ F +V P +A +A Sbjct: 158 SAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 210 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A S + A A + A + + V + L + V I Sbjct: 211 AWKT--SAGTAARTPVARA-TNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVI 267 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL+ + + P+ SLN A ++++E Sbjct: 268 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEASRRR 316 >gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group] Length = 343 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 17/200 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + + +++ + R S A+ +D + ++S+ E A+ Sbjct: 158 GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 216 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + V + Q I+ G E G++++ + LS+ Sbjct: 217 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 264 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 S P+ + S N+S A +++ + + I + + +L + E + Sbjct: 265 HCSVPMKGMVDSFNVSVAAGILMHHAVCDRISRIGHHGDLLPEESRILLAEFYLRHREST 324 Query: 203 LEERGYFRPVEKKKKMLDDL 222 + K + L Sbjct: 325 -AGIVHEYAKRKAGNFMAKL 343 >gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus marinus str. MIT 9515] Length = 160 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 46/176 (26%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ +N G +AR F++T L L+ P +K + V+ Sbjct: 3 ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRA--GLDYWPLVK---- 55 Query: 77 LKEAIADL------------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + I A + +N L + I ++ Sbjct: 56 ----LNNYPNFKKFKESKKNKRIIAFSKKNGIYLNRFRF-------LKDDI-------LL 97 Query: 125 FGRERWGLTNEEIALSNAIISF--P----VNPL---FPSLNISQAVLLMVWECMEN 171 FGRE GL I SN++IS P N SLN+S A + ++E + Sbjct: 98 FGREDTGLPESVINGSNSLISIFMPNVELSNNDKKGVRSLNLSVACGIAIYEANKQ 153 >gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB18] Length = 275 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 17/168 (10%) Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P ++ I+LV N+G + R+ F + +V P + Sbjct: 110 PLEPPELDTLPQQGIVLVLDQITDPHNVGAILRSAAAFAVK--AIVTTARHSPEATGVLA 167 Query: 61 --SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ A ++ V V NL A+ DL+ +R L + I Sbjct: 168 KSASGALELVPMVTV-QNLARALTDLN--------DRGFQTVGLDSE--GGDDLATIPLS 216 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ G E GL +A+ + SLN+S A L ++ Sbjct: 217 APLALVLGAEGKGLRQLTRQTCSALARLDMPGEIKSLNVSNAAALALY 264 >gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5] Length = 256 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 23/148 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 123 NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 179 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + V ++FG E G+ Sbjct: 180 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 225 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + P++ SLN+S A ++ Sbjct: 226 DYLAKIPISQRVESLNVSNAASIIFHSL 253 >gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName: Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S rRNA methylase; AltName: Full=Thiostrepton-resistance methylase gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus] gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581] gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19] gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021] gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849] gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200] gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1] gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1] gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2] gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2] gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1] gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1] gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2] gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2] gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2] gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2] gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2] gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2] gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2] gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2] gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2] gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2] gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358] gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1] gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2] gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1] gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2] gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1] gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2] gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1] gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2] gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95] gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902] gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001] gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB] Length = 269 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 16/160 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S +G V++L ++ NIG + R + + LV+ +++ ++ V Sbjct: 113 SRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRG-YVFSL 171 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129 V S +EAIA + R++ ++ K + + + + ++FG E+ Sbjct: 172 PVVLSGREEAIAFI----------RDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEK 221 Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G ++ EE + ++ +S P+ SLN+S ++ + + E Sbjct: 222 GGPSDLFEEASSAS--VSIPMMSQTESLNVSVSLGIALHE 259 >gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme DSM 15981] Length = 246 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 32/167 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70 I+L + N+G + R A + A+ + Sbjct: 101 ILLDGIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138 Query: 71 VRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFG 126 V A+ + + TA + K + + L R+ +G++ G Sbjct: 139 ATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYRLNLKGPIGLVIG 198 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G+ + + S P+ SLN S A ++ +E + + Sbjct: 199 NEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245 >gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter bemidjiensis Bem] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ + G +++L Q N+G + R+ + + R + A SSA A Sbjct: 90 LQGTRDGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDRAAGVTAVAEKSSAGATET 149 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I +V +N+ +A+ L +IY R+ L ++ F+G V + Sbjct: 150 ISVAQV-TNISQALESLKKAGFWIYGADGSARHT-------------LYQQDFTG-PVAL 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + G E G+ +A++S P+ SLN S A + ++E + + Sbjct: 195 VIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEVVRQRV 244 >gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 13/157 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74 ++IL +NIG + R+ F + + L P+D P+E + + +A + + Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 160 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +NL ++ R F + A ++ S + ++FG E G+ Sbjct: 161 TNL------CSYMNYLKKRG---FWIIGVTGYANEYFTDKFISD-KIALVFGAEDKGMRR 210 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P++ SLN++ A ++ ++ Sbjct: 211 LVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKS 247 >gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170] gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170] Length = 268 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%) Query: 16 VIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 +ILV P+ NIG + R NL + + NP+ + SS V Sbjct: 120 ALILVAEAPEKPGNIGALLRTADAANLDAVLIANPKGDLYNPNIVRSSVG--------CV 171 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRER 129 F+N +T++ + K A + + ++ + I+ G E Sbjct: 172 FTN--------QIGLGSTSQIIDFLKKKQINLFCAALSASQPYTQVNFEKAAAIVVGTES 223 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ E + S I P+ S+N+S + ++++E Sbjct: 224 TGLSQEWLNASTNNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 266 >gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1112] gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus acidophilus 30SC] gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1112] gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus acidophilus 30SC] gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus amylovorus GRL 1118] Length = 186 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 38/193 (19%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 ++L +P + N G +AR N L L+ P K + D V V Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVEVH 59 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122 +L + L P + ++++ +N Sbjct: 60 MHDDLNAFLK------------------TLGPDDEMYLISKFSSKNYSQVDYTDKNKNYY 101 Query: 123 IIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG+E GL + + + P++ N+S +V +++ E + + + Sbjct: 102 FVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTH 161 Query: 182 EQNTPATKGELLS 194 K + Sbjct: 162 HYENDKLKDDYDR 174 >gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45] Length = 177 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 17/161 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L +P++ N + R + +L ++ P K S A ++ + Sbjct: 4 IVLFEPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLDPK-YLSRPAAGRLLSDIEHEVH 61 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +S+ D + Y T R K+ + + + + + ++FG+E G Sbjct: 62 NSYSDFYNKYKDKNIHYIT----RYGLKTYSD-----VDFKKEYENNEEIWLMFGKESTG 112 Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + + P+ S+N++ V ++ +E M Sbjct: 113 IDKQVLKDNIDNCLRIPMINKMRSINLANCVAIVGFEVMRQ 153 >gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093] gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix DSM 17093] Length = 241 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 22/177 (12%) Query: 3 PYAPQLQNSAKG--PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P AP + + +G P+++L+ N G + R+ + R S Sbjct: 78 PEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAK 137 Query: 60 SSANADCVIDSVRVFSNLK---EAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 SA A + V+V NL EA+ A ++Y + A L +++ Sbjct: 138 VSAGASSHLPLVQV-KNLPRYMEALKARGVWLYGASG--------------DAAALPQQL 182 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +++ P+ SLN S A ++++ + + Sbjct: 183 DWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAALSSR 239 >gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum ATCC 33693] Length = 254 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 21/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71 +IL D N+G + R N + L +EK ++ + ++ Sbjct: 107 VILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRATMGSILNVNLFYLEKQ 166 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + LKE + + + AT K L +I + +IFG E G Sbjct: 167 EIIKLLKE---NNYSVIAT-----YLDKEALP--------YNKIQLKEKNAVIFGNEGRG 210 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + +E I +S+ P+ SLN++ A +++++ E Sbjct: 211 ICDEFINISDCKTIIPILSNTESLNVAVASAIILYKFRE 249 >gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6] gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium D344SRF] gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1636] Length = 286 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501] Length = 286 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933] gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502] gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410] gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408] Length = 289 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 144 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 202 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 203 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 247 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 248 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 286 >gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO] gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO] gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68] gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1071] gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1679] gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium U0317] gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1162] gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a01] gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133B] gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133A] gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133C] gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0133a04] gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium TX0082] Length = 286 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium damselae subsp. damselae CIP 102761] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 16/170 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L ++IL N+G R + + R + A + A V Sbjct: 90 LAGKENPLLLILDGVTDPHNLGACLRNADAAGAVAIIVPKDRSAQLTATASKVACGAAEV 149 Query: 68 IDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + VRV + A T R N V EA + + +G + I+ Sbjct: 150 VPLVRVTN------------LARTMRYLQEEKNIWIVGTAGEATHDIYQTKLTG-PLAIV 196 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E G+ + +I P+ SLN+S A + ++E + I Sbjct: 197 MGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIE 246 >gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304] gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304] Length = 228 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 22/184 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P L ++ P + P++ N G R T L LV P + Sbjct: 61 LQPSQASLAETST-PHLCFYSPRIPGNTGSAIRLCAITG-TILHLVEPLGFNLKDTKLRR 118 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNER 114 + D V F+NL E++ D I + TA+ R + V P + + E Sbjct: 119 A--GLDYHDMTHVVIHPNFTNLVESMPD-SRIISFTAQARTLYTEVDYQPNDILLFGPEP 175 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + I+ G + I + FP+ P SLN++ + ++E Sbjct: 176 GNIPDPMDIMSG--------DHIYK---QVRFPMRPSLRSLNLANCAAIALYEAWRQMGF 224 Query: 175 SSEK 178 + + Sbjct: 225 AGGE 228 >gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium E1039] Length = 286 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N G + R + + + R + +S A + RV +NL Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +++ T + ++ + ++ ++ G E G++ Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283 >gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 272 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + S + + +I G E GL ++ IA + + P++ SLN++ A + WE Sbjct: 214 KALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFWEL 269 >gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus] Length = 220 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 52/205 (25%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 ++L P + N G + R F +L L+ P SE+ + + V V Sbjct: 4 VVLFRPLIPANTGNIGRTCLGFG-ARLHLIKPLGFDLSEREVKRA--GLDHWEHVDLAVH 60 Query: 75 SN---LKEA-------------------------------IADLHFIYATTARNRNNFKS 100 + E+ IAD+ F +A T + Sbjct: 61 NTWTCFTESMLPVLGHNNSGGGGGGNIYLVSKRLKLGSTPIADVDF-FAPTPKP---PPI 116 Query: 101 VLAPKEAAIVLNE-----RIFSGQNVGIIFGRERWGLTN-EEIALSNAI--ISFPVNPLF 152 V P A L+ S +V ++FG E GL+ EE A+ + P+ Sbjct: 117 VAQPGGGAGELSSDTVGSSACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDV 176 Query: 153 -PSLNISQAVLLMVWECMENSIVSS 176 S N+S AV + V+E + Sbjct: 177 IRSYNLSNAVAMAVYEVERQRREAP 201 >gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 260 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 12/148 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ F+L + L + K S+ + + + + + E + Sbjct: 125 QDPGNVGGLIRSADAFSLDGIILSKNTVELYNPKLIRSTMASVFRV-KLYIVESKNEILK 183 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 FK + E A E FS +N I FG E G+++E + S+ Sbjct: 184 ----------LKEKGFKIISTSVENAKASYEYKFS-ENSVITFGNEAKGVSDEVFSYSDE 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 I P++ SLN++ A ++ +E Sbjct: 233 KIYIPMSEEINSLNVNVAASILFYEMNR 260 >gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC20E09] Length = 238 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 11/148 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R+ + + L + +E A + SA +I ++ SNL + Sbjct: 101 PRNLGSCIRSAAVYEIDALIINKHHCAPLNEVAHNVSAGGAELI-NIFYVSNLINCLK-- 157 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R + + E A + + II G E G+ + + +I Sbjct: 158 --------YLRKSNIDIYGLSEHAQKIYTSCDFTNSSAIILGSEESGMRQKTSESCDELI 209 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 +N F S N+S A +++ E Sbjct: 210 KLNLNKKFKSFNVSVATGIILSEISRQR 237 >gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b] Length = 256 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +G V+IL D Q N G + R M N L L + K ++ + ++ Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ ++ + L+ AT + E+I +N IF Sbjct: 162 --IIYETPEKIVEFLNNKNYLKIATALHEDSIS-------------YEKIELRENNAFIF 206 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ I S+ P+ SLN+S A + +++ E Sbjct: 207 GHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251 >gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 257 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 18/151 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 Q N+G + R + FN+ Q + N + K +S A I+ +R S L+ Sbjct: 122 QDPGNLGTILRTCFAFNVKQ-VIFNNCVDLYNAKTIKASMGAIFKINFLRFNSSKLTLEF 180 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + ++ AT +L + AI LNE + Q ++ G E GL+ I Sbjct: 181 LLKNNFYLIAT----------ILD--KNAISLNE-LKIKQKYCLMVGNEGHGLSQNFIDY 227 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ +N SLN++ A + ++E + Sbjct: 228 ASIKTMIKMNQT-ESLNVAVATAIFLYELNK 257 >gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila UWE25] Length = 265 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 27/170 (15%) Query: 15 PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 P ++ + + N+G + R+ + L + + + +S Sbjct: 115 PFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLF------T 168 Query: 74 FSNLKEAIADLHFIYATTARNRNN-------FKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ AR + +LA A ++ V I G Sbjct: 169 VPTVE-------------ARGEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVG 215 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E+ GL+ + + + P+ + SLN++ A L+++E + + Sbjct: 216 TEQLGLSERWMKQATMQVRIPMMGVADSLNVAMATTLLLYEVLRQRQLKK 265 >gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces odontolyticus F0309] Length = 325 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 16/165 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ ++ L N+G V R+ F + + R + A SA A Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226 Query: 67 VIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + R + L+EA +F+ + L + + + Sbjct: 227 RVPVARATNLVRALEEAKQAGYFVVGL---DGGGDAP----------LRGLSLADGPLVV 273 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + G E GL+ + I+S P+ SLN + A + ++E Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEV 318 >gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1] Length = 255 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 28/169 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + N+G + R + + R + +SA A +V + Sbjct: 106 IIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTN 165 Query: 76 ---NLKEAIA-DLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +KE + F+ A TT + N + G++ G Sbjct: 166 ISNTIKELKEKGMWFVCADMGGTTMYDLNLTGPI--------------------GLVIGN 205 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G++ + S P+ SLN S A + +E + + S Sbjct: 206 EGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQRLKSG 254 >gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM 20731] Length = 260 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 20/173 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + +AP+ +G V++L + N+G + R + L+ + K S Sbjct: 103 LAAFAPE-----RGMVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPKVVRS 157 Query: 61 SANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + + L+E R + ++ A R+ Sbjct: 158 TMGSLFHLPVFTGVKTGELEE-------------WCRQHGYALWATALEGAEDMTRLTWP 204 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ G E G++ E +A ++ + P+ SLN++ A ++++E Sbjct: 205 EKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVAVAGGIVMFEAARA 257 >gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio coralliilyticus ATCC BAA-450] Length = 245 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L + +++L N+G R + +V P+D + A + A Sbjct: 90 LAQHSAPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + VRV + A V EA + + +G + I+ Sbjct: 148 ETVPLVRVT----------NLARTMRALQEQGIWFVGTAGEATHDIYQAKLTG-PLAIVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E G+ + +I P+ SLN+S A + ++E + + Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLA 245 >gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY] gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY] Length = 260 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 29/170 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A L P ++L Q N+G + R+ F TQ+ + S K + Sbjct: 104 PEAEGLDGRM--PTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGM 161 Query: 63 NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + R+ L A AD+ + AT++ + P Sbjct: 162 GAHFAL---RLVEGL--APADIDRLEVPLLATSSHEGDFLHRAALPW------------- 203 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G I G E G++ + I P SLN+ A + + Sbjct: 204 -PCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEE--SLNVGAAAAICLH 250 >gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp. NAS-14.1] Length = 258 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P ++L+ N+G + R+ + +V + + + + A ++ Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVVG-MRHHAAPETGALAKTASGALER 161 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL +AI +L + VL A + E G+ V ++ Sbjct: 162 QPYLRVRNLADAIKELQ----------SMGYLVLGLDGEADMTVESALEGKRDRPVALVL 211 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + +A++ F SLN+S A + ++ ++S Sbjct: 212 GAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258 >gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 09V1-c] gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus iners LactinV 01V1-a] Length = 180 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76 + N+G + R + + + R + +S A + VRV Sbjct: 33 EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 92 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK+ + + T N + R ++ G E G++ Sbjct: 93 LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 134 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + ++ P+ SLN A +++++ + +K+ Sbjct: 135 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 180 >gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1] gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 11V1-d] gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LactinV 03V1-b] gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 2503V10-D] gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2053A-b] gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2052A-d] gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 2062A-h1] gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners LEAF 3008A-a] gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 143-D] gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners UPII 60-B] gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners SPIN 1401G] Length = 258 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76 + N+G + R + + + R + +S A + VRV Sbjct: 111 EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK+ + + T N + R ++ G E G++ Sbjct: 171 LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 212 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + ++ P+ SLN A +++++ + +K+ Sbjct: 213 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 258 >gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] Length = 262 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76 + N+G + R + + + R + +S A + VRV Sbjct: 115 EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 174 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK+ + + T N + R ++ G E G++ Sbjct: 175 LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 216 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + ++ P+ SLN A +++++ + +K+ Sbjct: 217 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 262 >gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS] Length = 229 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ + Q+ ++ R +++ ++A A + +V L E+ + Sbjct: 44 PHNLAAIIRSCDAVGIHQVHAISYRSSIKTKQ--HTAAGASRWL---KVH--LNESFVPV 96 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R + +L +N I + I+ G E G + E + L++ Sbjct: 97 GE------KLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKGPSQEALGLADNF 150 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-----LDY 198 I P+ + SLN+S A L+++E + + + + ++ Sbjct: 151 IYIPMMGMVESLNVSVAAALILFEAQRQRQAAGLYDTRHF----SDSDIERLLFEYTYPR 206 Query: 199 LEISLEERGYFRPV 212 L L ++G P Sbjct: 207 LAAVLRDQGKPYPK 220 >gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta thermophila DSM 6578] Length = 241 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74 + L Q N+G + R+ F L ++ P R + SS+ AD + V V Sbjct: 95 VALDHLQDPHNVGAILRSADQFGA--LGVIIPERRAVKDAASISKSSSGADAFVP-VVVE 151 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +NL+ A+ + + F V ++E SG V ++ G E GL+ Sbjct: 152 TNLRRALLHV---------KKAGFW-VYGADMEGQPVHEVDLSG-RVCLVLGAEGKGLSR 200 Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 EE+ + +++ P + S N+S A ++++E Sbjct: 201 LLREEV---DLLVAVPAHGHVDSFNVSVAAGILMYEVRRQQ 238 >gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255] Length = 265 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72 V+IL Q N+G + R + + + + + K S+ + +ID+ + Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNIIDASQ 179 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L F ++++ ++I G V ++ G E G+ Sbjct: 180 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E ++ S+ ++ P+ SLN + + ++++E + Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262 >gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 155 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 11/155 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L P + N G + R + + ++ P S++ + ++ + Sbjct: 5 IALFQPDIAGNTGTILRLGACLGVH-VHIIEPAGFDLSDRNLKRA--GMDYLERA----S 57 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+ I HF+ A + + + A I +N ++FGRE G+ + Sbjct: 58 LERHIDWQHFLDAM----QKFNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPDYV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + P+ SLN++ +V + E + Sbjct: 114 HQAVDCTLKIPMQQQARSLNLAMSVAITTGEALRQ 148 >gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae FH] Length = 239 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + Q N G + R + + + +S ++ +N Sbjct: 95 VMLDEIQDLHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFY-QNLVQVTN 153 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L AI L + ATT R K + ++RI ++ G E GL Sbjct: 154 LSYAITTLQKHGFWTVATTLDERLKPKDYR-----QVDFDKRI-------LLVGNEDKGL 201 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ + P+NP SLN+S AV ++++ Sbjct: 202 NALLLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 237 >gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length = 288 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 10/142 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 ENIG + R + + + S ++ + ++ DL Sbjct: 153 ENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKS----QDWPGDLD 208 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R+ L P E ++ L + SG V + G E GL + + Sbjct: 209 VL-----RDSGFTTVALTPGEGSVPLAGAV-SGGKVAFLVGAEGPGLAEHTMRRCDVRAR 262 Query: 146 FPVNPLFPSLNISQAVLLMVWE 167 P++ SLN++ A + +E Sbjct: 263 IPMSRGTDSLNVATAAAVAFYE 284 >gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 17/151 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R +F + ++KA S+ A I VR FS L A+ Sbjct: 111 QDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALFHIPVVRKDFSTLIPAL 170 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + AT+ I + + + G E G+ + IA + Sbjct: 171 QSQGVKVIATS--------------LQESTTMGEIPVTECMAFVMGNEGQGVHQDIIAQA 216 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + F SLN++ A ++++ Sbjct: 217 DFRVRIEM-EGFESLNVAVAGGIIMYHYRSG 246 >gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 256 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 21/165 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65 S +IIL D N+G + R N + L +EK ++ + Sbjct: 103 SLSNNLIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 162 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + + LKE NN+ + + + +I + +IF Sbjct: 163 YYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKNAVIF 206 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++++ I +++ P+ SLN++ A +++++ E Sbjct: 207 GNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251 >gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533] gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533] gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 253 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + K + S + I + + Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAI+ N ++ + + ++ G E G + E Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEV 220 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++ I P+ SLN + A +M++ Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567] Length = 273 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 28/156 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + L+ PR P ++ S + R+ Sbjct: 136 NVGAIFRSAAALGV-DAVLITPRCADPLYRRSIRVSMGTVFQVPWARI------------ 182 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER---------IFSGQNVGIIFGRERWGLTNEE 136 T ++ E+A + + + + +I G E GL+ Sbjct: 183 -----TRWPKDLEILHEHGFESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 237 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +A + + P+ SLN++ A + WE S Sbjct: 238 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETRLRS 273 >gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 283 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 VG +FG E WGL E +AL++ +S P+ SLN++ A + ++ Sbjct: 226 DGPVGWVFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLYTTARQQ 280 >gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus ruminis ATCC 25644] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 IL + N+G + R + + + R + +S A + RV + Sbjct: 104 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLA 163 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I+ T G ++ G E G+++ Sbjct: 164 QTVDELKNRGLWIFGT--------------DMKGQDFRNWDAKG-PTALVIGNEGKGISS 208 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 209 LLKKKCDEMLTIPMIGHVQSLNASVAASLLIYQ 241 >gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 246 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R + + + R + + A + VRV + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + T A + + ++ G E G+ Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P+ SLN+S A + ++E + + Sbjct: 206 LTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAQ 246 >gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 25/157 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 + N+G + R + + + R + +SA A + VRV + E Sbjct: 107 EDPHNLGSILRTADASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADE 166 Query: 80 AIADLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ A +AR S+ V ++ G E G++ Sbjct: 167 LKERGVWLVAGDADASARYDEMDYSL------------------PVALVIGNEGKGVSRR 208 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A L+++E + Sbjct: 209 LKEKCDFTVGLPMKGAVSSLNASVAAALLMYEVLRGR 245 >gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599] Length = 328 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 15/176 (8%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60 TP ++ ++IL Q N+G + R + L W + K + Sbjct: 166 TPRPALPASAPDHDLVILDRIQDPGNVGTILRTAAAAGIRTVLTTAGTAACW-APKVLRA 224 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 V++ + N+ + L + + A L Q Sbjct: 225 GMGGHFVLE---IHENIP--LEQLKAQVGALPLAGTVLQDGQS--LYASDLR------QP 271 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +FG E G+ E A ++ P +P SLN++ + + ++E + S+ Sbjct: 272 LAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNVAASAAVCLFEQRRQRLASA 327 >gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R+ + ++ PR + R S+ + + +RV + Sbjct: 100 ILDGITDPHNLGACLRSADAAGVH--MVIAPRNRSASINSTVRKVSSGSADHVAFLRVTN 157 Query: 76 NLK--EAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+ + + +I T + + + K + ++ G E +G+ Sbjct: 158 LLRILKLLQKYDIWIVGT---VEKSDREIFDAKLVGPL-----------ALVMGSEGYGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 N IIS P+ SLN+S A + ++E + Sbjct: 204 RRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEALRQR 243 >gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi ATCC 49188] Length = 286 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 4 YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 A +L P++ +L N+G + R+ F L + + +++ Sbjct: 125 RARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A +I + V NL EAI +LH + + P+E E SG + Sbjct: 185 GALEMISHIEV-RNLAEAIEELH-----SLGFQTIGLDSEGPQEM-----EATLSGGRIA 233 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + A+ + SLN+S A + ++ Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277 >gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium nodosum Rt17-B1] Length = 234 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 21/166 (12%) Query: 13 KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + P I+L+D Q +N+G + R + + L + + +SA I + Sbjct: 83 ENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTKDNSAHVTPGSIKASAGTIFRIP-I 141 Query: 72 RVFSNLK---EAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + NL E + D +IY R K + + + +GI+FG Sbjct: 142 VITVNLARYIEKLKDKGVWIYGADMRG----KPLW-----------EVKLERPLGIVFGN 186 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 E G+ + ++S P+ SLN+S + ++++E + + Sbjct: 187 EGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRREM 232 >gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7] Length = 249 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 17/154 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G R + ++ PRD + + + A + + V + Sbjct: 110 PHNLGACLRTADAAGVH--AVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTN------- 160 Query: 83 DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A T R + L + A ++ + + + + G E G+ + Sbjct: 161 -----LARTMRQLKSRDVWLVGTDDQATGSLHQVDARRPMAWVMGAEGEGMRRLTRETCD 215 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +++ P+ SLN+S A + ++E + V+ Sbjct: 216 ELVTIPMLGSVESLNVSVASAVCLYESVRQRTVA 249 >gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4] gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4] Length = 294 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 21/167 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + L+ + + ++ + + V+ + Sbjct: 143 VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVK--TT 200 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + + A + + AT ++++V + + V ++ G E+ G Sbjct: 201 VADFLGWKTKAGVS-VVATHLAGAVDYRTVDYKR-------------RPVVVLMGNEQSG 246 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L E + ++ + P L SLN++ A +M++E + + E Sbjct: 247 LPEELASRADMLARIPQAGLADSLNLAVATGVMLFEARRHLLTLDEA 293 >gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio parahaemolyticus 16] Length = 245 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 15/159 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + A + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G ++ I+ G E G+ Sbjct: 157 ---------NLARTMRALQEQGIWFVGTAGEATQDIYQAKLTG-SLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + +I P+ SLN+S A + ++E + + Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLA 245 >gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp. SKA14] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 21/171 (12%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++LV + Q N+G R+ T + + + + R +SA A Sbjct: 91 LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 I V +NL + DL +IY A ++ N+ Sbjct: 151 DRIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL + ++ P+ SLN+S A + ++E + Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246 >gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 256 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG V+IL D Q N G + R M N L L + K ++ + ++ Sbjct: 105 KGDVVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN--I 162 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + + L+ N+ + + E+I +N IFG E G+ Sbjct: 163 IYETPENIVKFLN---------DKNYLKIATALHEDSISYEKIELRENNAFIFGHEGGGV 213 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + I S+ P+ SLN+S A + +++ E Sbjct: 214 SEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251 >gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42] gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42] Length = 260 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 29/170 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A L P ++L Q N+G + R+ F TQ+ + S K + Sbjct: 104 PEAEGLDGRM--PTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGM 161 Query: 63 NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + R+ L A AD+ + AT++ + P Sbjct: 162 GAHFAL---RLVEGL--APADIDRLEVPLLATSSHEGDFLHRAALPW------------- 203 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G I G E G++ + I P SLN+ A + + Sbjct: 204 -PCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEE--SLNVGAAAAICLH 250 >gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus scrofa] Length = 361 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 14/183 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L Q N+G V R+ + ++ + +SA A V+D VFS Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMD---VFSTD 212 Query: 77 ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A A ++ A + E I Q ++ G E GL Sbjct: 213 DLAGFLQAKARQGWLVA--GTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGL 270 Query: 133 TNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188 + E A +++ P P SLN+S A +++ + +EQ+ Sbjct: 271 SREVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEQKREQHLLQD 330 Query: 189 KGE 191 E Sbjct: 331 PQE 333 >gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 271 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 68/174 (39%), Gaps = 19/174 (10%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + + P+I +L + N+G + R + + + N R ++ +S A Sbjct: 113 KAEEANEDPIIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAI 172 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + VRV + + +++ T + ++ + + Sbjct: 173 EHVPVVRVTNISKTIDLLKERGVWVFGT---------------DMKGQSMWQMDAALPIA 217 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G++ + +I+ P+ SLN S A L++++ ++ + +S Sbjct: 218 VVIGNEGKGVSPGVKKHLDGMITIPMRGHVQSLNASVAAGLLMYQIYQSRMGNS 271 >gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 42/178 (23%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72 ++IL + N+G + R A N + P P +A S I Sbjct: 127 IVILENVMNPTNVGAIFRSAAALNM---DAVFLTPGCSDPLYRRASRVSMGTVFQIPWTF 183 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------------- 113 + N + +L P++A L E Sbjct: 184 IQDN----------------NEMRCQREILWPRQAITELREMGYKTAALALTDDSVGIDN 227 Query: 114 -RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + II G E GL + I + + + P++ SLN++ A + W+ + Sbjct: 228 PELMQEEKLAIILGTEGEGLMDRTIEMCDYTVKIPMSHDVDSLNVAAASAVAFWQLGK 285 >gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus LGP32] gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222] gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio splendidus LGP32] Length = 246 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R + + + R + + A + VRV + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + T A + + ++ G E G+ Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P+ SLN+S A + ++E + + Sbjct: 206 LTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAQ 246 >gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum] Length = 382 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 47/195 (24%) Query: 17 IILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++ + NI V R+ + + +V R + S A S ++ + R Sbjct: 112 VVVCEDLGNPGNIAAVVRSCDAMGIQHMHIVEKRIRFDSFGAI--SKGSEKWVTIHRHAD 169 Query: 76 NLK--EAIADLHFIYATTARN--------------RNNFKSVLAP--------------- 104 L+ + + D + ++ + +N L P Sbjct: 170 TLECVQNLRDNGYKIWSSDLSLGAFPFDKLVFQPNQNIIPPQLDPFYNHLKNQNNQNNQN 229 Query: 105 ------------KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 KE + + I + + + I+FG E G+++E +LS+ I P++ L Sbjct: 230 NQNQNNIFDNIYKEYSKDKDNVILNNEKIAIVFGNEHNGVSDEMKSLSDRRIFLPMSGLV 289 Query: 153 PSLNISQAV-LLMVW 166 S N+S +V +L+ + Sbjct: 290 ESFNVSVSVGMLLAY 304 >gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays] gi|194693648|gb|ACF80908.1| unknown [Zea mays] Length = 365 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L+ +EKA ++ A + + S Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 259 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIFGRER 129 DLH + T R + + +A+ L+ + +++ ++ G E Sbjct: 260 GT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEG 315 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ E + +++ P+ F SLN+S A + ++ Sbjct: 316 NGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 354 >gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM 2489] Length = 270 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 21/142 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83 NIG + R ++P P++ +A S + R +L+E D Sbjct: 138 PFNIGSIFRTAEAMGCEN-VFISPNCTDPNQSRALRSGMGCIETLGYKRC--SLEELPQD 194 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA- 142 K V + + E F + + +I G E G++ E + ++ Sbjct: 195 ---------------KPVFVLETGGTPITEFSFPKEGI-VIIGSEELGVSPEALKRADYG 238 Query: 143 IISFPVNPLFPSLNISQAVLLM 164 +S P+ L SLN+ A ++ Sbjct: 239 RVSIPMTGLKASLNVGVAFGIL 260 >gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 265 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL-- 77 VD Q N G + R+ + KA +SA + + V +++ Sbjct: 104 VDTQDPGNAGTIVRSADAAGADAVVFAGASVDPFGGKAVRASAGSIFHLP---VVTDIGV 160 Query: 78 KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A+ + T + R+ + A L G +FG E GL Sbjct: 161 ADAVRQIREHGCRIVATTPSAPRDI-----DTAQDAGEL------DTPTGWLFGNEARGL 209 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++A++ PV SLN++ A + ++ Sbjct: 210 PRATVVSADAVLRVPVYGQAESLNLAVATAICLYASARAQ 249 >gi|695296|gb|AAB41449.1| spoU [Chlamydia trachomatis] Length = 119 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 17/102 (16%) Query: 73 VFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L+EA+ + I+ T + + + P + IFG E Sbjct: 26 VVDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESK 71 Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ + A S+ + P+ SLN++ +V ++++E Sbjct: 72 GLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 113 >gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium petroleiphilum PM1] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 23/176 (13%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62 L ++ +GP ++LV N+G R ++ P+D A + ++ Sbjct: 88 DLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVAS 145 Query: 63 NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + V + L E ++ T + A Q Sbjct: 146 GAAETVPYFMVTNLARTLGELKERNIWVIGTA--------------DDAPRTLYAADLRQ 191 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V ++ G E G+ + ++S P+ SLN+S A + ++E + + Sbjct: 192 AVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQRGAT 247 >gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum DSM 20595] Length = 281 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 12/174 (6%) Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 P P ++ +I+L + N+G V R+M + L + +A Sbjct: 111 PELPSVEEFLGPDSTARRIIVLENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRA 170 Query: 58 RSSSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 S + R+ + + + D +I A+ A + P + L + + Sbjct: 171 VRVSMGTVFQVPWTRIPHWPRSMQMLKDRGWITASLALRDDAL-----PLDQFAQLPDVM 225 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 V +I G E GL+ I+ ++ + P+ SLN++ A + WE Sbjct: 226 APDSKVALILGTEGDGLSAATISHADHAVVIPMAGGVDSLNVAAAGAVAAWELR 279 >gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6] gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter thermophilus TK-6] Length = 240 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 20/174 (11%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFN-LTQLRLVNP--RDGWPSEKARSSSA 62 +++ K ILV +N+G + R + L P R ++ +SA Sbjct: 81 FKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALL---PTHRSSPINQVVVKASA 137 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + +V +L +A+ D + V++ + + Sbjct: 138 GSVFHLKISKV-PSLSKALKDF----------KKQGGWVISVERGGKDIRYTSIP-LPCA 185 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E G++ + +S+ ++S P+ SLN+S A + +WEC+ SI+ S Sbjct: 186 LVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVRGSIIKS 239 >gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC 35406] Length = 261 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 23/169 (13%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P ++ P ++L + Q N+G + R F + S K ++ A Sbjct: 101 PPSASTITAPSLLLDNVQDPGNVGSILRTADWFGCRSVFTTEGTADPFSPKVVQATMGA- 159 Query: 66 CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + V+V L +A D I T + P ++ L Sbjct: 160 --LARVKVTPITDVHTLGQAHRDGVAILGTFLEGEDILAHHSTPLFSSPYL--------- 208 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMV 165 +I G E G++ ++ P + SLN++ A +++ Sbjct: 209 --LIMGNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESLNVAAATAIVL 255 >gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp. C150] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 18/176 (10%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ +++ ++IL N G + R +T + + R + + Sbjct: 87 LSDIMDKVEQEENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKT 146 Query: 61 SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A I RV + L + +I+ T ++ + Sbjct: 147 STGAVEHIPIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPSHKWNTA 192 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G + +I G E G++ + +I+ P++ SLN S A ++++E N + Sbjct: 193 G-RLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247 >gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626] gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626] Length = 292 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 16/155 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRV-----FSNLKEA 80 N+G V R ++ L+ P + +A S + V L Sbjct: 144 NVGAVFRNAAALDV-DAVLLAPHCADHLARRAIRVSMGTVFQVPWAHVPEELWVEGLMHM 202 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + FI TTA + L +R S + FG E +GL I Sbjct: 203 LHEEGFI--TTALALTDTAVPLT-------DIKRTSSLGKHALFFGSEGYGLDQRTIEAC 253 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P++ SLN++ + + WE + Sbjct: 254 DQTAIIPMSHAVDSLNVAASSAVAFWELFARKEQA 288 >gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 247 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 11/154 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL +N G + R + + + R + +S+ A + ++V SNL Sbjct: 102 ILDHLTDPQNFGAIIRTADAVGVDGVIIPKRRSVDVNPTVMKASSGAAEHVPIIKV-SNL 160 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 ++ T ++ + + +L + ++ G E G++ Sbjct: 161 RQ----------TISKLKEQWIWILGTDIDGDRGIFEENYNIPLALVVGNEASGMSPLVK 210 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I + P+ SLN S A ++++E Sbjct: 211 KECDFIANIPMIGRVNSLNASVATAVVLYEIYRQ 244 >gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f] Length = 288 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 12/142 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + L++PR P ++ S + R+ A++ L Sbjct: 143 NLGAIFRSAAGLGM-DAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEP-WPAALSLL- 199 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R L P A L V ++ G E GLT++ +A + Sbjct: 200 -------RTAGFEVVALTPAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRA 252 Query: 145 SFPVNPLFPSLNISQAVLLMVW 166 P+ SLN++ + + Sbjct: 253 RIPMAHGVDSLNVAATAAIACY 274 >gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 269 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 26/157 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-SNLKEAI 81 + NIG + R + + L +P + SS ++ ++ V+ ++LKE + Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG---IVFTMPVWQASLKEVL 182 Query: 82 ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +H ++ TT P ++ Q + ++FG E+ GL+ + + Sbjct: 183 DLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGLSPDWL 228 Query: 138 --ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + N I+ P+ SLN+S +V + +E + Sbjct: 229 NGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 264 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 22/156 (14%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P+ NIG + R + + + NP+ + SS + ++ +E + Sbjct: 122 PEKPGNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRSSVGTLFTVPIAT--ASTEELL 179 Query: 82 -----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 D A +A V + + I G E GL+ Sbjct: 180 HFLAQEDFTLYCAA---------------LSASVPYDSVSYKGRTAIAVGTEDVGLSPLW 224 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + S+ I P+ S+N+S + ++++E + Sbjct: 225 LEASSQNIIIPMRGKIDSMNVSVSAAVLIFEAVRQR 260 >gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays] Length = 345 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L+ +EKA ++ A + + S Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 239 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIFGRER 129 DLH + T R + + +A+ L+ + +++ ++ G E Sbjct: 240 GT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEG 295 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL+ E + +++ P+ F SLN+S A + ++ Sbjct: 296 NGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FS 75 L + Q +N+G + R+ + + + R + SA A + V++ Sbjct: 104 LDELQDPQNVGALIRSADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQ 163 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E ++ + SG V ++ G E GL Sbjct: 164 TIEELKQRGCWVVG--------------ADMDGVDFYAANMSGPIV-LVIGAEGRGLGRL 208 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+N SLN S A ++++E + Sbjct: 209 VKQKCDDVVSIPMNGGVNSLNASAAGAVLMYEVVRQR 245 >gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SS3/4] Length = 248 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 12/154 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + R + +SA A +V +N+ I Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKV-TNMAATIE 165 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL + V A + R+ +G++ G E G++ + Sbjct: 166 DL---------KKRGIWFVCA--DMGGESMYRLNLTGPIGLVIGNEGEGVSRLVKEKCDM 214 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I S P+ SLN S A ++ +E + + + Sbjct: 215 IASIPMKGDIDSLNASVATGVLAYEIVRQRLAKA 248 >gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4] Length = 249 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 IIL + + N+G + R + + R + +SA A +V + Sbjct: 101 IILDNIEDPHNLGAIIRTANQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNI 160 Query: 76 --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E + F+ A + + ++G++ G E G+ Sbjct: 161 SKTMEELKEQGMWFVCA----------------DMGGTTMYDLNLTGSIGLVIGNEGHGV 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ + I S P+ SLN S A ++ +E + I S Sbjct: 205 SDLVKKNCDMIASIPMYGDIDSLNASVACGVLAYEVVRQRINKS 248 >gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM 15897] Length = 241 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 17/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 + N+G + R + + + R + S A + +V + L Sbjct: 100 EDPHNLGAIIRTCDAIGVDGVIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDS 159 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + ++ +N A ++ ++ G E +G++ Sbjct: 160 LKKEGFWVVGC---ELDNSTDYRAVDYNMPLV-----------LVIGSEGFGISRLVKEH 205 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A +++++ + Sbjct: 206 CDMNVILPMVGHVNSLNASVATAVLLYQVYNSR 238 >gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus helveticus H10] Length = 186 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 18/183 (9%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 ++L +P + N G +AR N L L+ P K + D VR Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + T + + V + +N +FG+E GL Sbjct: 60 RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + + P++ N+S +V +++ E + + K K + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDD 171 Query: 192 LLS 194 Sbjct: 172 YDR 174 >gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta smaragdinae DSM 11293] Length = 252 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 20/155 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 +N+G + R+ F + + L R SA A + V N+ A+ L Sbjct: 114 PQNLGAILRSADQFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRS-VVPNIPRAVEGL 172 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++Y + V ++ G E G+ Sbjct: 173 KKAGFWVYGA---------------DMGGGSAWNFSLKGKVAMVLGAEGRGIGRLVRERC 217 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + IIS P S N+S A ++++EC Sbjct: 218 DEIISIPSRGHIDSFNVSVAGGILLYECRRQQWSD 252 >gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571] gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571] gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC 5463] Length = 186 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 18/183 (9%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 ++L +P + N G +AR N L L+ P K + D VR Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + T + + V + +N +FG+E GL Sbjct: 60 RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + + P++ N+S +V +++ E + + K K + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDD 171 Query: 192 LLS 194 Sbjct: 172 YDR 174 >gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 129 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 20/139 (14%) Query: 44 RLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNF 98 +V P+D + R + A VI V V + L++ ++ T Sbjct: 2 VIV-PKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG------ 54 Query: 99 KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 EA + L ++ +G + II G E G+ + ++ P+ SLN+S Sbjct: 55 -------EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVS 106 Query: 159 QAVLLMVWECMENSIVSSE 177 A + ++E + V + Sbjct: 107 VATGVCLFEALRQRSVKAA 125 >gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor] gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor] Length = 354 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 70/200 (35%), Gaps = 17/200 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ R+ + + +++ R S A+ +D + ++++ E Sbjct: 169 GNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLD-IEIWNSPAE------ 221 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 +A + ++ V + Q I+ G E G++++ + LS+ S Sbjct: 222 ---CFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELSDLHCS 278 Query: 146 FPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 P+ + S N+S A +++ + + + E+N +L + E + Sbjct: 279 VPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPEENRILLA---EFYLRHREST 335 Query: 203 LEERGYFRPVEKKKKMLDDL 222 + K + + L Sbjct: 336 -ATIVHEYAKRKAENFMARL 354 >gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 293 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 63/183 (34%), Gaps = 33/183 (18%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 L+ I L + N+G V R + + L+ S + ++ + Sbjct: 130 SLKPKGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVF 189 Query: 65 ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 ++ + S L + T + +++++ Sbjct: 190 SMPLYKVSEADFLNWRKGVSGL---------VVGTHLKGAVDYRTI-------------P 227 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ + V ++ G E+ GL + + + P SLN++ A +M++E +++ Sbjct: 228 YANKPVVLMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRRDALTL 287 Query: 176 SEK 178 E+ Sbjct: 288 DER 290 >gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680] gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 249 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 20/168 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + PV++L +P+ N G V R F T + D W R + + Sbjct: 102 RTPRSAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 156 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 L + + + + + FG E Sbjct: 157 HFATAVERL---------------TVDELPPGPVFALDPEGDDIRGLKLPDDAVLAFGSE 201 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 R GL+ E A ++ +++ P+ P S N++ +V + ++ + Sbjct: 202 RTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLFHWSATGGAPA 249 >gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5] Length = 240 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVI-NLRSCMNYL 164 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F +++ S + V ++FG E G+ Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRKLVAETC 210 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + P++ SLN+S A ++ + Sbjct: 211 DYLAKIPISQRVESLNVSNAASIIFHSLHK 240 >gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902] Length = 229 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+WGL+++ L + + P+ + SLN+S A +++E + + Sbjct: 114 GPTAFVLGAEKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAAGVA 173 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEE 205 + A ++ + L E Sbjct: 174 PSHGEGLTA---------EHYQQLLVE 191 >gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas aeruginosa UCBPP-PA14] Length = 248 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79 N+G R + Q +V P+D + R + A VI V V + L++ Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T A ++ ++ G E G+ Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLTGPTVLVMGAEGKGMRRLTREH 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + +++ + Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244 >gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931] Length = 290 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 28/156 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + L+ PR P ++ S + R+ Sbjct: 153 NVGAIFRSAAALGV-DAVLITPRCADPLYRRSIRVSMGTVFQVPWARI------------ 199 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER---------IFSGQNVGIIFGRERWGLTNEE 136 T ++ E+A + + + + +I G E GL+ Sbjct: 200 -----TRWPKDLEILHEHGFESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 254 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +A + + P+ SLN++ A + WE S Sbjct: 255 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETRLRS 290 >gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp. R2A130] Length = 287 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 16/161 (9%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73 +++L N+G + R+ + LV R + S++ A ++D + + Sbjct: 135 IILVLDQVTDPHNVGAILRSAVAMGVKT-VLVTSRHQSSETGVLAKSASGAVDMVDMLAI 193 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +L E + + P E L++ S V ++ G E Sbjct: 194 RNLSKSLDELREHRFAVIGLDSEG---------PLEVQETLDDLKPS--KVALVLGAEGK 242 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + A+ + SLN+S A L ++ Sbjct: 243 GLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVRAA 283 >gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2] Length = 265 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 17/149 (11%) Query: 15 PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72 P+++L+ N+G V R+ F + + R P A + +++ A +R Sbjct: 113 PLVVLLDRVTDPHNVGAVLRSAEVFG-ARAVIAPARHSAPETGALAKTASGALERQPYLR 171 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQNVGIIFGRER 129 V NL +A+ +L +L A V + + +G++ G E Sbjct: 172 VV-NLADAMQELQ----------AMGYVLLGLDGEAEVTLAQAVAEAGTRPIGLVLGAEG 220 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNIS 158 GL + + ++ P F SLN+S Sbjct: 221 PGLRDRTRETCDRLVRIPAQGGFGSLNVS 249 >gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans CH34] Length = 247 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 21/157 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS---NLKE 79 N+G R ++ P+D A + ++ A + + V + L+E Sbjct: 107 PHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRE 164 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ T V I+ G E G+ Sbjct: 165 LQERGIWVIGTADGTEKALYDVDL--------------KGPTAIVMGAEGEGMRRLTRET 210 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +++ P+ SLN+S A + ++E + + Sbjct: 211 CDELVAIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247 >gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1] Length = 273 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E + S + II G E GL E I + + P+ SLN++ A + W+ + Sbjct: 214 EALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272 >gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22] gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323] gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4] gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1] gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22] Length = 253 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + K + S + I ++ N Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHI---QIVQN 168 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + EAI+ N ++ + + ++ G E G + + Sbjct: 169 PILEAISSF---------KENGIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKD 219 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++ I P+ SLN + A +M++ Sbjct: 220 VIETADKKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis SK353] Length = 242 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N+G + R N+ + + R + +S A I R Sbjct: 94 NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +I+ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + +IS P+N SLN S A ++++E N + Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242 >gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length = 268 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R+R L P +A L E +G+ V ++ G E GLT + + +++ P++ Sbjct: 189 RDRGFQLISLTPNPSAPTLAE-AMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGT 247 Query: 153 PSLNISQAVLLMVWE 167 SLN++ A + +E Sbjct: 248 DSLNVATAAAMAFYE 262 >gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 243 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 29/161 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR-----LVNPRDGWPSEKARSSSANADCVIDS 70 ++ L D Q NIG + R +F++ L + NP+ ++ + Sbjct: 103 IVFLDDLQDPGNIGTIIRLCKSFDIDTLIVKNFDIYNPKC--------LRASQGSFFKTN 154 Query: 71 VRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + E + F +T ++ A L F ++V ++ G E Sbjct: 155 IVQVDKYDELSKLMSKDFSIISTLLDKE-----------ATELKNFTFPKKSV-LVLGNE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G++ I LS + P++ F SLN++ +++ + Sbjct: 203 GNGISQNAIDLSKHKVYIPIS--FESLNVATCAAIILNKWR 241 >gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC 19977] gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus] Length = 153 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75 I+ +P++ N G R + +L LV P + +A+ A D + SV V Sbjct: 4 ILFHEPRIAPNTGNAIRMVAGTGC-ELHLVQP--LFDLSEAKVRRAGLDYHDMASVTVHE 60 Query: 76 NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 NL A L +YA TA A V I ++FG E GL Sbjct: 61 NLSAAWKTLKPQRVYAFTA--------------HASVTYTDIAYQPGDVLLFGPEPTGLD 106 Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQ 159 E +A + + P+ P SLN+S Sbjct: 107 AEVLADPHITEKVRIPLLPGRRSLNLSN 134 >gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii str. Illinois] Length = 243 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 34/175 (19%) Query: 4 YAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P+L++ K V+IL N+G + R+ F + +V + PSE + Sbjct: 79 SQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD--AIVVKQRHSPSETSV 136 Query: 59 --SSSANADCVIDSVRVF--SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIV 110 +++ A ++S+ V +NL AI L F YA + + P Sbjct: 137 IAKTASGA---LESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKLTEIRFP------ 187 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL--FPSLNISQAVLL 163 V + G E G+++ + +S P+ F S+N+S A + Sbjct: 188 --------NKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAI 234 >gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016] gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016] Length = 173 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 36/179 (20%) Query: 13 KGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANAD- 65 P +I L +P+ N+G V RA V S AR + ++ Sbjct: 3 TEPTVIIGLHNPKSPTNVGAVMRAA---GCYNATQVRYNGTRYSRAARFQTDTQNSHERI 59 Query: 66 CVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 +++ + ++L E + + + TA + P + Sbjct: 60 DLLEMEDLTASLDGDVEIVC-VELVVGATA-----LPHFVHP--------------EKAI 99 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG E L E + ++ ++ P + +N++ V +++++ + ++ S + + + Sbjct: 100 YLFGPEDGSLPQEVVDKAHHVVYIPTHGC---MNLAATVNVVMYDRLAKTLDSIDDHAQ 155 >gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638] Length = 196 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 15/171 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R+ F + + L WP E A+ SSA+ ++ + + Sbjct: 34 PHNVSAILRSCDAFGIYGIHLYYTVSQWP-ELAKKSSASGKKWVERTKHTD-------PV 85 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R++ E A L + S + +I E G E L + Sbjct: 86 KMVGGL--RDQGYQVLRTGFSETARPLMDFDLS-KPSAVILSNEHSGTAPELAELVPDEV 142 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 P+ + S N+S A L+++ + T E+ Sbjct: 143 YIPMQGMIQSFNVSVAAALILYHGFSQRFAKGMYDNPSF----TPEEMEKL 189 >gi|270285622|ref|ZP_06195016.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg] Length = 104 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 17/102 (16%) Query: 73 VFSNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V +L+EA+ + I+ T + + + P + IFG E Sbjct: 11 VVDSLEEALRGIPREKIFCLTTKGSSYYGERELPLDG--------------TYIFGAESR 56 Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + A S+ + P+ SLN++ +V ++++E Sbjct: 57 GLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 98 >gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922] Length = 257 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E GL++ S+ +I P+ SLN+S A + V+E + + Sbjct: 206 AIVLGTEATGLSDFWADESDVLIKIPMLGKVDSLNVSNAAAICVYEAVRQRL 257 >gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM 16294] gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM 16294] Length = 250 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 13/150 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L Q +N+GM+ R+ N+ + L S +SA + + + Sbjct: 111 IALDGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFKLP-IYFCNT 169 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+E + + A I + + G E G+++E Sbjct: 170 LQEVL------------TEQQEAKIYTLSSYAKTTIYDIQESEKTIYVLGNENEGVSHEV 217 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L N +S P+N SLN++ L+ + Sbjct: 218 AKLCNNSVSIPMNRGVESLNVAVTASLIAF 247 >gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM 11293] Length = 229 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 24/170 (14%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ + ++L D N V R+ F + + ++ R+ + + + Sbjct: 30 LEERTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFT--ISSGVALGTSGW 87 Query: 68 IDSVRVFS-----NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 +D R LK A+ +L I AT+ P I L + S Sbjct: 88 LDIHRYREEGAGNTLK-AVHELKAKGYRIVATS------------PHAQDINLEDFDISA 134 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +FG E G++ E +AL++ + P+ S NIS + +++ Sbjct: 135 GKSAFLFGNELEGVSQEAMALADEFMKIPMRGFVESFNISVSCAIVLHHL 184 >gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 350 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 NI R+ + + +V+ R S A+ +D + + KE + Sbjct: 167 GNISAAFRSADALGIQSVHVVSCGSSKRYNGNRHVSMGAEKWLD-IEFWDTPKECFKVLK 225 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + ++ + I+ G E G+ +E + LS+ Sbjct: 226 SRGYRIATT----HLGMDTVSIYDM--------DWSCPTAIVVGNEGRGICDEALELSDL 273 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+N + S N+S A +++ Sbjct: 274 RCSIPMNGMVDSFNVSVAAGILMH 297 >gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus acidilactici 7_4] gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 251 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 V+IL + N+G + R + + + R + +SA A + V+V Sbjct: 104 VVILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNN 163 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + LKE +I+ T + A R + VG+I G E G+ Sbjct: 164 LVNTLKELKDRGLWIFGT---------------DMAGTDYRRWDATGPVGLIIGNEGKGM 208 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ + Sbjct: 209 ARLTKENVDEMLTIPMVGDIQSLNASVAAGLLIYQGYSSR 248 >gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM 18053] Length = 178 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 13/173 (7%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + S K P VI+L + + NIG R F ++ L P + S+ A Sbjct: 16 EFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSALGA- 74 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGI 123 + + A+ A A + + VL + +G Sbjct: 75 ---EMAVAWEKNPSAVD------AVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAF 125 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +FG E G+ +E IA S+ + P S N+S + +++W+ + I Sbjct: 126 VFGNEVEGVADEVIAASDGCLEIPQFGTKHSFNVSVSAGIVLWDYIRKKITEK 178 >gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704] Length = 250 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70 I+L + + N+G + R + + R + +SA A V + Sbjct: 105 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 164 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +LKE L F+ A + + +G +G+I G E Sbjct: 165 AKTMESLKE--KGLWFVCA---------------DMGGEEMYDLNLTG-PIGLIIGNEGE 206 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + P+N SLN S A ++ +E + Sbjct: 207 GVSRLVKETCDFTARIPMNGDIDSLNASVAAGVLAYEIVRQR 248 >gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 247 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 23/172 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65 +Q ++IL N+G R+ ++ PR + R ++ + Sbjct: 90 MQCKTTPLLVILDGVTDPHNLGACLRSADAAGAH--IVIAPRNRSACLNGTVRKVASGSV 147 Query: 66 CVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 I ++V + L + + + +I T +++ + N ++ + + Sbjct: 148 DNIPFMQVTNLIRTL-QLLQKYNIWIIGTVMQSQRL------------IFNSKLT--RPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + G E G+ + +++ P+ + SLN+S A + ++E + Sbjct: 193 AFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEALRQRW 244 >gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum DSM 5159] Length = 261 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 10/182 (5%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 +A L + + V++L Q +NI + R + + L R + ++SA Sbjct: 89 DFATLLDPAPESIVLLLDHLQDPQNIATLLRTAEAAGVRGVVLPERRAAGITPAVVNASA 148 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + + +NL A+ T R + L P A L R + Sbjct: 149 GAVEHL-QITLVTNLARAVD--------TLREHGYWIVALEPGPNAQSLF-RAPLPLPLV 198 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 ++ G E GL+ + ++ + P+ SLN + A + ++E + + E Sbjct: 199 LLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSIALYEIVRRLLGQESAEKTE 258 Query: 183 QN 184 Sbjct: 259 TR 260 >gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425] gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425] Length = 260 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 48/172 (27%) Query: 20 VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 V+ Q N+G + R +++A A+ V+ S Sbjct: 114 VETLQDPGNLGTMIRT------------------------AAAAGAEGVLLSSDSVE--- 146 Query: 79 EAIADLHFIYATTAR--------NRNNFKSVLAPKEAAIVLNERIFSGQ----------N 120 + + + AT + + + ++ I + + Q Sbjct: 147 --LENPKVLRATAGQWFRLPLSVAEDFQAELQHYRQQGIQVVATLPQAQSNYWDVDLTCP 204 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL+ +AL++ + P+ P SLN++ A L+++E Sbjct: 205 TLFLLGNEGAGLSASVVALADRQVKIPLQPGVESLNVAIAAALLLYEAQRQR 256 >gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 289 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 14/172 (8%) Query: 3 PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56 P QL SA+ P V++L + N+G R+ + LV P P + Sbjct: 117 PSVVQLLTSAQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGI-DAVLVTPSCADPLYRR 175 Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNER 114 + S + R L+ D+ + T + + ++ + A L Sbjct: 176 SVRVSMGTVFQVPWTR----LESWPGDIALLRDAGFTLASLALCEDSISLDDFAA-LPAL 230 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I+ G E GL IA S+ + P++ SLN++ A ++ W Sbjct: 231 RGPDARLAIVMGTEGHGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFW 282 >gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus kowalevskii] Length = 1247 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R F + QL L + + S A+ I V ++ A+ D Sbjct: 1106 NLGGICRTCEIFGVGQLVL-ASLKYAEHKDFQGLSVTAEKWIPLREVKAS---ALKDYLL 1161 Query: 87 IYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 R +++ ++ A + ++ G ER G+ E I L + + Sbjct: 1162 EV------RKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVE 1215 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P + SLN+ + L+VWE ++ + Sbjct: 1216 IPQLGVIRSLNVHVSGALLVWEYTRQQLLKA 1246 >gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797] Length = 251 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 17/145 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 Q NIG + R F + + L R + ++ + + ++ + Sbjct: 109 QDPHNIGAIFRTAAFFGVRGIVLTKDRSAPINATVYDVASGGMEAVPFAVETNLSRSMTQ 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A +I T+ E A + ++ G E GL + Sbjct: 169 AKETGVWIMGTS--------------EHAEEDVSVYSQDRPWMVVIGNEEKGLRRLTLEQ 214 Query: 140 SNAIISFPVNPLFPSLNISQAVLLM 164 + + + SLN S A +M Sbjct: 215 CDVVTRLTPTGIVDSLNASVAAGIM 239 >gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1] Length = 245 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 23/173 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L A+ ++IL N+G R + + + R + + A Sbjct: 90 LSQHAQPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAET 149 Query: 68 IDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + VRV + +L+E + +I T A + + Sbjct: 150 VPLVRVTNLARTMRSLQE--QGI-WIAGTAG--------------EATHDIYQAKLDGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 I+ G E G+ + +I P+ SLN+S A + ++E + + Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRAL 245 >gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046] Length = 253 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 23/156 (14%) Query: 17 IILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DS 70 ++LVD Q NIG + R + + L + K+ S+ + I D Sbjct: 111 VLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVRGDL 170 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + NL+ AD ++ T+ + +++ + +I G E Sbjct: 171 MEWVENLQ---ADGIRVFGTS--------------LDESISYKKVEPSDSFALIVGNEGS 213 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+ + +A ++ I P+ SLN++ A ++++ Sbjct: 214 GINPQILAKTDQNIIIPILGGAESLNVAVATGILLY 249 >gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126] gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126] Length = 231 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 14/164 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+N ++L D + N + R+ + ++ + + R S A Sbjct: 29 LENRTDFIRVVLEDIRDPHNANAIIRSGECLGIQHYHIIENENVFKLG--RGVSRGAIKW 86 Query: 68 IDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +D + + +A+ DL +K V+ E + Q + I+ Sbjct: 87 VDVHQYPESKTPTADALHDL---------KSQGYKIVVTSPNKEACAPEELALDQPIAIV 137 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G ER G++ E ++++ + P++ S N+S A + + Sbjct: 138 MGNERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFYSL 181 >gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933] gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933] Length = 223 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + L S K S ++ + L++ +A Sbjct: 87 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 140 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D+ + F +++ ++ II G E G++ E ++L++ Sbjct: 141 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 195 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN+ A ++++ Sbjct: 196 NVYIPMKGNAESLNVGVAAGIVLY 219 >gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 197 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 17/169 (10%) Query: 25 GENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+ + R+ F + + L V E R SSA+A + +R + E + Sbjct: 35 PHNVSAILRSCDAFAVPDVHLLYVG---QPFPEVGRKSSASARKWVRRIR-HRDAGEMVQ 90 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L R +S+ P+ + +I G E G+ + + Sbjct: 91 RLEGQGLCLIRTGFGPQSISLPEWDFT---------RPTAVILGNEHSGVQEDLEQMVAQ 141 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 I P+ + SLN+S A ++++E + ++E+ P + + Sbjct: 142 EIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQAG--LLEERALPGDRQD 188 >gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37] gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase MG346 gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium G37] gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 166 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R+ F L L+ P + ++K + D +++F + Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFK-ANLHLIKPYGFFLNDKRMVRA--GLNCWDKIQLFEH 64 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +A + I+ T + + L +FG+E G Sbjct: 65 KSWEHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELY----------FVFGQETKG 114 Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L + I P+ S+N++ AV+ +++E + Sbjct: 115 LPKTIMDNFKQNQIRIPIWNSVRSINLANAVVCILYEYSKQ 155 >gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 21/153 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ + T EA + L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLGVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ P+ SLN+S A + + Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237 >gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 325 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 16/172 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 LQ ++ L N+G V R+ F + + R + A SA A Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226 Query: 67 VIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + R + L+EA +F+ L + + + Sbjct: 227 RVPVARATNLVRALEEAKRAGYFVVGLDGGGD-------------APLRGLSLADGPLVV 273 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E GL+ + I+S P+ SLN + A + ++E + Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAKA 325 >gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus lipocalidus DSM 12680] Length = 250 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRV- 73 I+L + +N+G + R + + L P + +SA A ++ +++ Sbjct: 98 ILLDGVEDPQNLGAIIRTAECAGVHGIVL--PLHHSVKVTPAVGRASAGA---VEHMKIA 152 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +NL AI +L + ++ A + + ++FG E G+ Sbjct: 153 LVTNLVRAIEEL----------KQGGLWIVGADAMANHTYFEVSLAAPLALVFGGEGRGI 202 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++S P+ SLN+S A L+ +E + Sbjct: 203 RRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQRYQDGG 247 >gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria bacterium BBFL7] Length = 244 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82 N G + R ++ + + + +SA A I +V S++K+A+ Sbjct: 109 NFGAIIRTAECTGVSAIIIGESGSAPINPATIKTSAGAVFNIPICKV-SHIKDAVFLMKA 167 Query: 83 -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I AT E + L I Q++ ++ G E G+ + + + Sbjct: 168 YGITTIGAT---------------EKSTKLVYDIDLNQSIALVMGSEERGINPSTLKVID 212 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ SLN+S A +++E + Sbjct: 213 EPIKLPMKGDIASLNVSVACGAILYEIVRQQ 243 >gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus EPS] gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus EPS] Length = 248 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 27/165 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADC------VID 69 +L N+G R ++ P+D A + ++ A V + Sbjct: 103 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 160 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R + LKE + T+ + A + + + ++ G E Sbjct: 161 LARTMNELKE---RSIWCVGTS--------------DDAPGTIYQSDLKRPLALVLGAEG 203 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + ++S P+ SLN+S A + ++E M Sbjct: 204 DGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQRGA 248 >gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33] Length = 234 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L AK V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEANINYNEEDYPD--------------K 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1] Length = 256 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 29/176 (16%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 M P+ N+ + L + Q N+G + R++ F + L++P P + K Sbjct: 104 MAAIQPEQNNTLA--AVYLHEIQDPGNLGTILRSLAWFGGVR-CLLSPGSVDPFNPKVIR 160 Query: 60 SSANADCVI--DSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 SS A + + L E A + + + +P+ A Sbjct: 161 SSMGAVFHVPMELDVSIDTLPERFAKIGC---------LDMDGEPLSSPEFKACD----- 206 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECME 170 IFG E G+ +++ NA + P L SLN++ AV L ++E Sbjct: 207 ------CYIFGNEARGVPRDKLEALNAKPFTIPGVGLIESLNLATAVNLSIYERQR 256 >gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. doylei 269.97] Length = 227 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRASSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KINNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX] gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX] gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768] gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222] gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074] gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301] gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC] gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC] Length = 269 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 36/162 (22%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76 + NIG + R + + L +P + SS VF ++ Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177 Query: 77 LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE + +H ++ TT P ++ Q + ++FG E+ GL Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGL 223 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + N I+ P+ SLN+S +V + +E + Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 246 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 60/153 (39%), Gaps = 25/153 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R ++ + + P+ G S A +SA A + +V NL +A+ Sbjct: 110 NFGAIIRTAECAGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 166 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + AT +L ++ ++ I+ G E G++ + + Sbjct: 167 QGSGIRVVAAT-----EKTNQLLYAEDFSV----------PTAIVMGAEDVGISPAVLKV 211 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN+S A + ++E + Sbjct: 212 VDSKAKLPMKGEIGSLNVSVACAVFLYEVVRQR 244 >gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 29/155 (18%) Query: 23 QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 Q N+G + R + + L V+P + K ++ + + R+ +LK Sbjct: 116 QDPGNVGAIIRTADAAGINGVVLGEGTVDP----FNGKVIRATQGSIFHLPVQRM--DLK 169 Query: 79 EAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 EA+ ++ T+ + I N +I G E G+ + Sbjct: 170 EAVQICKEKNIPVFGTSLQGSTYN---------------AIQPQDNFALIVGNEGSGVED 214 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + +++ + P++ SLN+S A ++++ Sbjct: 215 TLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249 >gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11] Length = 247 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 15/171 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 + + +++L N+G R + +V P+D S A + A Sbjct: 90 VSQTDNPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSASMTATVSKVACGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + VRV + A V EA + + +G + I+ Sbjct: 148 ETVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATHDVFQSKLTG-PLAIVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + +I P+ SLN+S A + ++E + + Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRALQG 247 >gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 244 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 26/155 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------CVID 69 V++L N+G + R+ + + + + + E +S+ A V + Sbjct: 101 VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIH-NFKQEGVLRASSGAMLGMPFCVVYN 159 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + VF LK+A D + T+ + +N S+ + ++ G E Sbjct: 160 PLDVFHELKQA--DFVLL-GTSLQGQNLPISLES----------------KKALVLGNEG 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 GL+ + +A + ++ P+ F SLN+ A ++ Sbjct: 201 EGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 235 >gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17] Length = 292 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 13/150 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN--------- 76 N+G + R+ ++ LV P G P +A S I R+ + Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+E + A + + L + E + +IFG E GL+ Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNS--PESADHIGKLALIFGTEGDGLSRHT 253 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IA ++ + P++ SLN++ + + + Sbjct: 254 IAGADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 70 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + ++ G E G++ + I+ P+ SLN S A ++ +E ++ + Sbjct: 14 GPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAYEVLKQRTLK 70 >gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70] gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s] gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923] gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2] gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150] gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023] Length = 269 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76 + NIG + R + + L +P + SS VF ++ Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177 Query: 77 LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE + +H ++ TT P ++ Q ++FG E+ GL Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPTVVVFGSEKDGL 223 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + N I+ P+ SLN+S +V + +E + Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT 98-5491] gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491] Length = 228 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 26/155 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------CVID 69 V++L N+G + R+ + + + + + E +S+ A V + Sbjct: 85 VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIH-NFKQEGVLRASSGAMLGMPFCVVYN 143 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + VF LK+A D + T+ + +N S+ + ++ G E Sbjct: 144 PLDVFHELKQA--DFVLL-GTSLQGQNLPISLES----------------KKALVLGNEG 184 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 GL+ + +A + ++ P+ F SLN+ A ++ Sbjct: 185 EGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 219 >gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1] gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 269 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76 + NIG + R + + L +P + SS VF ++ Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177 Query: 77 LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE + +H ++ TT P ++ Q ++FG E+ GL Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPTVVVFGSEKDGL 223 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + N I+ P+ SLN+S +V + +E + Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + +A S ++ R E Sbjct: 135 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELK---- 190 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T + + + P+ +A L E G V ++ G E GLT + LS+ Sbjct: 191 -----TLKEKGFRLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVR 245 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 246 VRIPMSRGTDSLNVATAAALAFYE 269 >gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 235 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 22/160 (13%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68 P+++L +P+ N G V R L +V+ D P SA + Sbjct: 88 PDRTAPLVLLDNPRNLGNFGAVVRVAA--GLGASGVVSTGDVDPWHPTVLRGSAGLHYAL 145 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 RV A+ F + + V P + FG E Sbjct: 146 PVARVDD--PAALEGELFAF---DADGEPVDRVRFPD--------------GAVLAFGSE 186 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 R GL+ A ++ ++S P+ PL S N++ +V + ++ Sbjct: 187 RHGLSERTRARADRVVSLPMRPLVSSYNLTTSVAMALYHW 226 >gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 261 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAIAD 83 ENIG + R F + L + + P ++ S A + + +NL ++I Sbjct: 120 SENIGSILRNAAAFGIKS-ILFDSKSASPYLRRSVRVSMGAIFQLQLAKT-TNLPDSIQ- 176 Query: 84 LHFIYATTARNRNNFKSVLA---PKEAAIVLN-----ERIFSGQNVGIIFGRERWGLTNE 135 R + +++A PKE + L+ + I +N+ +I G E G+ Sbjct: 177 ---------RLKERPTNLVALALPKENSHHLSKTKTIQEIGKLENLVLIVGNEANGIEEG 227 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + S+ I P+ SLN+S A+ + + Sbjct: 228 VLDASDVIGYIPMQNNIDSLNVSHALAVAL 257 >gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49] gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49] Length = 263 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 17/165 (10%) Query: 11 SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + P+I++ + P+ NIG + R ++ + + NPR + SS Sbjct: 111 PKQNPLILIAEAPEKPGNIGALLRTADAAHVDAVLIANPRTDLYNPNIIRSSVG------ 164 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGR 127 VF+N + A+A I A + N S+ + +E+ + +G I+ G Sbjct: 165 --CVFTN-QVAMASSEDIIAF---LKKNNISIYSAILQESQPYHTQDFTTG--CAIVVGT 216 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ S A I P+ SLN+S A ++++E Sbjct: 217 EATGLSQAWRDASTANIHIPMQGEIDSLNVSVAAAVLLFEAKRQR 261 >gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus Ellin6076] gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus Ellin6076] Length = 180 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G R ++ +L L P ++ A ++ + + EA + Sbjct: 35 NVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGA----ENTVCWEHAWEARPLVEK 90 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 AR + + + A+ L + V +IFG E G+ AL + + Sbjct: 91 -----ARAQGYEIAAVETSVHAVDLFDWTPR-FPVLVIFGHEVDGIRPAISALCDTHVRI 144 Query: 147 PVNPLFPSLNISQAVLLMVWECME 170 P+ SLN++ A ++++E + Sbjct: 145 PMLGAKHSLNVATAGGVVIYELLR 168 >gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246] Length = 240 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 21/149 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F++ + L P+D P+E + + +A + + +NL+ + L Sbjct: 108 NIGTIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I T + F +++ S + V ++FG E G+ + Sbjct: 166 KHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETCD 211 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + P++ SLN+S A ++ + Sbjct: 212 YLAKIPISQRVESLNVSNAASIIFHSLHK 240 >gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5] Length = 258 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 15/169 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ V++L D Q N G + R ++ + L + K S+ + Sbjct: 101 EEVLAGKNPLVMVLEDLQDPGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSI 160 Query: 66 CVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + V +L++ + + R+ + ++ Sbjct: 161 YRMPFLYVEDVVSLEKKLKE--------KGIRSFAAHL-----KGENSYDQESYKGGTAF 207 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GLT++ ++ +I P+ SLN + A ++++E Sbjct: 208 FIGNEGKGLTDQAAEAADCLIRIPMCGKVESLNAAMASGILMYEAARQR 256 >gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster] Length = 386 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71 ++ + + N+G + R +Q+ + + KA I Sbjct: 214 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 273 Query: 72 RVFSNLK-----EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L EA D H A T R R N +++ + G + +I Sbjct: 274 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGL--------GAHNLLII 325 Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ E N I P+ SLN++ A+ L+++E Sbjct: 326 GGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 376 >gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu 4113] Length = 253 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 22/161 (13%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + PV++L +P+ N+G V R F T + D W RS + + Sbjct: 107 KRPRAAPVVVLDNPRNLGNVGAVVRLAAGFGATGVVTTGDIDPWHPNAVRSGAG-----L 161 Query: 69 DSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 L +A+ + + + + FG Sbjct: 162 HFATAVERLPGDAL---------------PEGPLYVLDAEGEDIRSVTIPD-DALLAFGS 205 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ER G++ E + +++ P+ P S N++ +V + ++ Sbjct: 206 ERHGISPELRKRATRLVALPMRPQVSSYNLATSVAMALFHW 246 >gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 180 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 29/183 (15%) Query: 5 APQLQNSAKG---PVIILV----DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 A L++ +G P + LV D + N+G R +++ L P Sbjct: 12 AKALKDFLRGVQRPEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTI 71 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A I R + EA+ +L + AI + E Sbjct: 72 AGVGRGAHRRIPW-RYVEHADEALVELK---------------GMGYMACAIEVAEGAVP 115 Query: 118 ------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V ++ G E G+T +++ + + P+ SLN+ A+ ++ + + Sbjct: 116 YYSLKYPDRVCLVVGHEYHGVTTRTLSVCDNAVYIPMYGKIKSLNVHVALAVVAFHVLHQ 175 Query: 172 SIV 174 ++ Sbjct: 176 QLI 178 >gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC 29176] Length = 271 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +R+ + + II G E GL + IA + + P+ SLN++ A + WE Sbjct: 214 KRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAVAFWELGR 271 >gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra] gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum B1 str. Okra] Length = 257 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IIL + + N G + R + + R+ + +SA A + +V + Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++ + + + + + + ++ G E G++ Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +A++ P+ SLN S A ++++E ++ + S Sbjct: 217 TKNKCDALVKIPMFGNITSLNASVAGGMLMYEILKQRMKSK 257 >gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270] gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270] Length = 234 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 14/150 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +P+ N+G + R F + +++ K +S A + +V +F Sbjct: 93 ILLCEPRDKGNLGTILRTALGFGFKNIAIID-GCDVFDPKTVRASMGAIFKM-NVEIFKT 150 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +E V + + + ++FG E GL N + Sbjct: 151 FEEYKNTF-----------EENNIYSFILNKGSVSLKNVEIKKPFTLMFGNESHGLENFD 199 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + S N+ A + ++ Sbjct: 200 L-KGTTPVFIEQSEDIDSFNLPIASSIAMY 228 >gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis MR-1] gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis MR-1] Length = 246 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 19/159 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 IL N+G R + + + P+D A + A Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152 Query: 76 NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A T R V EA L + G + I G E GL Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P++ SLN+S A + ++E + Sbjct: 206 RLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEAVRQR 244 >gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO] Length = 254 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + L S K S ++ + L++ +A Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D+ + F +++ ++ II G E G++ E ++L++ Sbjct: 172 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN+ A ++++ Sbjct: 227 NVYIPMKGNAESLNVGVAAGIVLY 250 >gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S] Length = 218 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 127 NKMAVFFGTELTGLSAEVLGAADLCVKIPMYGFTQSYNISVAVAIVIYSLL 177 >gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2] gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 245 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 17/175 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N V R F + + +V R + + + AD + R ++K AI+DL Sbjct: 64 PHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTR--YADQWLTLHRQ-PDIKTAISDL 120 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + E I L+E + + ++FG E G++ E + L++ Sbjct: 121 --------KQQGYQVYASYLGEGTIPLSE-VNVSKPTVLLFGNEHSGVSEEALRLADGTF 171 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 P+ S NIS A L +++ E + + + E + + Sbjct: 172 VIPMYGFVQSFNISVAAALTLYDVTERARRQVGR-----RYYLSHEEKKTLYEQW 221 >gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 184 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R + + ++ L P ++ ++ AD + S ++A + Sbjct: 46 NVGSMFRTADSAGIERIILSGYTATPPRKEISKTALGADESVPW----SYTEDAYKTVRK 101 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + A L E + + + + ++ G E GL +E + +A++ Sbjct: 102 LQA-----EGVKVCALEIAEGSRAHSSICMADFPICLLVGNEVDGLDDELLQACDAVLEI 156 Query: 147 PVNPLFPSLNISQAVLLMVWECME 170 SLN++ A + ++E + Sbjct: 157 AQYGTKHSLNVAVAAGVALFELVR 180 >gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385] Length = 247 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 15/171 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65 L + +++L N+G R + +V P+D + + A Sbjct: 90 LAQYEQPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAA 147 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + VRV + A V EA + + +G + I+ Sbjct: 148 ETVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVM 196 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E G+ + +I P+ SLN+S A + ++E + + + Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247 >gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris A21JP2] Length = 231 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 10/160 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 V++L Q N+G + R+ + + L R + S+ I +R Sbjct: 82 PKLVLVLDHIQDPHNLGAIIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFIGIKFIR 141 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +++ I L NNF + + ++ + V +I G E G+ Sbjct: 142 V-NSVSATINFL---------KNNNFWVYASALDKKAQAYNQVSYSEQVALIVGNEGNGV 191 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + +++ I SLN+S A ++++E ++N Sbjct: 192 SKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFEIIKNQ 231 >gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679] gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a01] gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133B] gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133A] gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133C] gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0133a04] Length = 254 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + L S K S ++ + L++ +A Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D+ + F +++ ++ II G E G++ E ++L++ Sbjct: 172 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN+ A ++++ Sbjct: 227 NVYIPMKGNAESLNVGVAAGIVLY 250 >gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 2360] gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum DSM 1313] Length = 267 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR--- 72 +IL Q N+G + R +T +V+ + K S+ + I + Sbjct: 119 VILDSVQDPGNMGTIIRTADAAGMTG-VIVSKGCVDVYNPKVLRSTMGSIFHIPICQSQD 177 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +F + R + + A + N+ I+ G E G+ Sbjct: 178 IFETMD--------------RMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + E ++ ++ P+ SLN S A ++++E + Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261 >gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894] Length = 189 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R + Sbjct: 38 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 95 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E IA + I AT +++++ K + V ++ G E+ G Sbjct: 96 PEEFIAWRKSAGVS-IVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 141 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L ++ ++A+ P SLN++ A +M++E + + +E Sbjct: 142 LPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 187 >gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 264 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 21/159 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R + + L + K SSA S V + Sbjct: 115 VLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAG--EWFRSPLVVESD 172 Query: 78 KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ A AT N + + I+ G E GL Sbjct: 173 LSALVKKYQAQGVKAIATLPTATKNHWEIDFTR--------------PTLILLGNEGAGL 218 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + L++ + P+ SLN++ A ++++E Sbjct: 219 SPQLATLADETVKIPLFGGVESLNVAIATAVILYEARRQ 257 >gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. TM1035] Length = 258 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 8 LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + P ++L+ N+G + R+ F ++ PR + + + + A Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGAR--AVIAPR-HHAAPETGALAKTASG 159 Query: 67 VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---V 121 ++ NL +AI +L +VL A + E G+ V Sbjct: 160 ALERQPYLRVRNLADAIIELQ----------AMGYTVLGLAGEAELTIEAALEGKRDRPV 209 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 ++ G E GL + +A++ F SLN+S Sbjct: 210 ALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVS 246 >gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum ATCC 27405] gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellum JW20] Length = 267 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR--- 72 +IL Q N+G + R +T +V+ + K S+ + I + Sbjct: 119 VILDSVQDPGNMGTIIRTADAAGMTG-VIVSKGCVDVYNPKVLRSTMGSIFHIPICQSQD 177 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +F + R + + A + N+ I+ G E G+ Sbjct: 178 IFETMD--------------RMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + E ++ ++ P+ SLN S A ++++E + Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261 >gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of Datisca glomerata] Length = 409 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q + G ++ L N+G V R+ F + + R + A +SA A + Sbjct: 246 QEAPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARL 305 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 R + + A T + V + + L+E + + ++ G E Sbjct: 306 PVARAT----------NLVRALTGWAQAGLFVVGLAADGEVSLDELEMASDPLVLVVGSE 355 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLN 156 GL+ + + P+ SLN Sbjct: 356 GRGLSRLVGERCDLTVRIPMAGDVESLN 383 >gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis audaxviator MP104C] gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis audaxviator MP104C] Length = 272 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 11/169 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ V++L Q N+G + R L + + K +SA A Sbjct: 111 LQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFH 170 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + F +L A + T A K V P+ + + G Sbjct: 171 LPA---FGDLP---APAVLEFFTGA---GVQKFVADPR--GDYSLYECDFSRPTALFMGN 219 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G A ++ +++ P+ SLN+ A L ++E + + SS Sbjct: 220 EARGCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLKSS 268 >gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii 23-P] Length = 254 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 21/157 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + + +SA A I +V ++K+A+ Sbjct: 114 NFGAIIRTAECTGVNGIIIQKDGSAPVNAETIKTSAGAAFKIPICKV-DHIKDALYILQA 172 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A++ + AT E + I Q + I+ G E+ G+ + + + Sbjct: 173 AEIKTVAAT---------------EKTEDVLYDINLNQPIAIVMGSEQRGINPSILKMVD 217 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 P+ SLN+S A ++E + I ++K Sbjct: 218 YKAKLPILGDIASLNVSVACGAFLYETIRQRISITKK 254 >gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 268 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R+R L P AA L E +G+ V ++ G E GLT + + +++ P++ Sbjct: 189 RDRGFQLISLTPNPAAPTLAE-AMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGT 247 Query: 153 PSLNISQAVLLMVWE 167 SLN++ A + +E Sbjct: 248 DSLNVATAAAMAFYE 262 >gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 248 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 15/177 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P + Q A + L +N G V R+ + + +SA Sbjct: 85 PVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGARAILWPEHSSAPLTPATFRASA 144 Query: 63 NADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A I+ R+ +L +A+ A AR ++ + + L E +G Sbjct: 145 GA---IEHARLCRVPSLPDALE------ALAARG---VAAIALDAQGPVELGELPLTG-P 191 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 V I+ G E G + + P+ SLN S A + ++E + S Sbjct: 192 VAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQRRASRA 248 >gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM 4810] Length = 320 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 10/156 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++ L N+G + R+ F + L R + +A A + + Sbjct: 165 PPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQ 224 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + TA + ++ E + Q ++ G E GL Sbjct: 225 VT----------NLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGL 274 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + + ++S P+ SLN S A + ++E Sbjct: 275 SRLARDICDQVVSIPMGGRAESLNASVAAAIALYEI 310 >gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3] gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3] Length = 265 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 14/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81 + N+G + R + L +P + SS + ++S L + Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLP---IWSATLDQ-- 179 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + V +P+ + E Q + ++FG E+ GLT + + Sbjct: 180 --VQQVIL----EEKWHAFVTSPRAHTMYFCE--NYNQPLVLVFGSEKDGLTASWLRGNF 231 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + IS P+ SLN+S AV + +E + + Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVVRQRWEA 265 >gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas albilineans] Length = 248 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 11/156 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G R+ +T + + + + R +SA A + + +NL Sbjct: 103 VLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSAPVNATVRKTSAGAADRLP-IVAVTNL 161 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + +L + EA L + G NV ++ G E GL Sbjct: 162 ARCLRELQ---------KQGVWIYGLAGEAETSLYAQDLRG-NVALVLGGESDGLRRLTR 211 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN+S A + ++E + + Sbjct: 212 EHCDGLVRIPMPGEIESLNVSVAAGVTLFEAVRQRM 247 >gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109] Length = 210 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+WGLT++ L + + P+ + SLN+S A +++E + V+ Sbjct: 114 GPTAFVLGAEKWGLTDQAQDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLA 173 Query: 179 NVKEQNTPATKGELLSF 195 + + + L F Sbjct: 174 PTQGEGLKPEHYQQLLF 190 >gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 263 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 41/185 (22%) Query: 4 YAPQLQNSAK--GPVIILVDPQLGENIGMVARA----------M--WNFNLTQLRLVNPR 49 P L + GPV++L NIG + R+ M N P Sbjct: 104 AQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVVMQDRN---------APE 154 Query: 50 DGWPSEKARSSSANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 + +A ++ A ++ +RV S + +A+ +R + V+ Sbjct: 155 ETGTLARA---ASGALEIVPLIRVVNLSRVLDALK-----------SRGLW--VVGLDAG 198 Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 VL+ F + V ++ G E GL + I ++ SLN+S A + ++E Sbjct: 199 GGVLDGAAFHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYE 258 Query: 168 CMENS 172 + Sbjct: 259 MFRHR 263 >gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129] gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase MPN_521 gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129] gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae FH] Length = 166 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 9/156 (5%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R+ F L L+ P + ++K + D V++F + Sbjct: 8 IVLFCPEIPNNTGNIVRSCTAFK-ANLHLIKPYGFFLNDKRMVRA--GLNCWDKVQMFEH 64 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 TT N+ + + +N + + + + +FG+E GL Sbjct: 65 -----KSWEHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTL 119 Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + S + P+ S+N+S V +++E + Sbjct: 120 MEQYSQNQVRIPIWNPVRSINLSNTVACVLYEYAKQ 155 >gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 23/156 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFS---NL 77 Q N+G + R + ++ PRD +E S A + ++V + + Sbjct: 54 QDPHNLGAILRTADGAGVD--AVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTNLARTM 111 Query: 78 KEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 K+ + +I+ T+ + +R +++ ++ G E G+ Sbjct: 112 KQLQSRGIWIFGTSDKGDRGLYETDFT---------------GPAALVMGAEGEGMRRLT 156 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ P LN+S A + ++E + Sbjct: 157 EENCDFLLRIPMKGSIPCLNVSVATGVCLYEMVRQR 192 >gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276] gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s] Length = 269 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76 + NIG + R + L +P + SS VF ++ Sbjct: 126 EKPGNIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177 Query: 77 LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LKE + +H ++ TT P ++ Q + ++FG E+ GL Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGL 223 Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + + N I+ P+ SLN+S +V + +E + Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4] gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4] Length = 264 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 15/166 (9%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60 P ++ + G ++L Q N+G + R+ F L L D W + R+S Sbjct: 104 YPPEARMPKRSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRAS 163 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +A + L A AR E I Sbjct: 164 AGSAFRIPVIAVEIERLFALQNAGMRFIAAVAREGGTP--------------EAIDLRGG 209 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL+ E +ALS+ + P SLN + A L+++ Sbjct: 210 CAVMIGNEGAGLSVELLALSDERATIPCPGAVESLNAAVAGSLLLY 255 >gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 275 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 20/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + + N G + R + + + R + +S A I RV +NL Sbjct: 128 ILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPIARV-TNL 186 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +AI L +I+ T + + + N + +G +I G E G++ Sbjct: 187 SQAIQQLKQAGFWIFGTDMKGTDYR-----------LWNAQGAAG----LIIGNEGRGMS 231 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +++ P+ SLN S A L++++ + + + Sbjct: 232 EGLKKDVDEMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGAPQ 275 >gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 259 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 25/167 (14%) Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 ++ AD +D V + EA+ A ++ V E A ++ F+ Sbjct: 114 RTAQGADKWLD-VWTWPTAAEAVP---------ALKAAGYRIVATALEEAEPIDTFDFTV 163 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++FG E G++ E +A+++A P+ S NIS A + ++ + + + Sbjct: 164 -PTALVFGNEVEGVSRELLAMADARCVIPIVGFTQSFNISVAAAIALYHAQRDRLARRGR 222 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML-DDLYS 224 + + +L Y R V+K +L + L Sbjct: 223 HGDLSPE-------------WKATLRAVFYLRSVQKAGVLLWERLQR 256 >gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000] gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000] Length = 167 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADC 66 + N I L P++ N G + R L L +V+ S K + Sbjct: 7 ISNENFNVSIALYRPEIPSNTGNIGRLC--VGLNISLHIVSKPSFILSAKEIRRA--GLD 62 Query: 67 VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + + N + + N K ++ + + + N ++ Sbjct: 63 YWEKLNLIKHENEHTFLEYC----------KENNKRIVPISKFGHIRYDEFNYSDNDILL 112 Query: 125 FGRERWGL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 FGRE GL + E +N+ + P++ S+N+S ++ +E Sbjct: 113 FGRESTGLRESIWENDAANS-VYLPMSDDIRSINVSNTAAIVSYEAFRQ 160 >gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group] Length = 263 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + + +++ + R S A+ +D + ++S+ E A+ Sbjct: 78 GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 136 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + V + Q I+ G E G++++ + LS+ Sbjct: 137 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 184 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+ + S N+S A +++ Sbjct: 185 HCSVPMKGMVDSFNVSVAAGILMH 208 >gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 11/181 (6%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A + +++L + N+G + R+ + + R + +SA A Sbjct: 87 ARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGA 146 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV + + T R + +A + ++ Sbjct: 147 VERCPVARVTN-----------VAKTLERLKEAGIWSVAFAADGERALGEVDLKGPTALV 195 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E GL + P++ SL++S + + ++E + K+ E Sbjct: 196 LGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSKSAVEMR 255 Query: 185 T 185 Sbjct: 256 P 256 >gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella schoenbuchensis R1] Length = 271 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 21/163 (12%) Query: 8 LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANAD 65 LQN + ++ +L +N+G + R F + +V+ KA S A Sbjct: 115 LQNLPEKTLVPVLCGISNHDNMGAIFRNAAAFA-SHGIIVDKTSCDPLYRKAIRVSVGAA 173 Query: 66 ---CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ EA+ D F L+P +A + S + Sbjct: 174 LKIPYTQGADI-DSIIEALNDADF-----------HLYALSP--SAPRYLKEAKSTKRTA 219 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 II G E GL + S + P+ F SLN++ A + + Sbjct: 220 IILGAEGDGLPAHILQKSETL-RIPMAYGFDSLNVATASGIAL 261 >gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502] gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502] Length = 254 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ + P+ SLN+ A ++++ Sbjct: 222 SSADQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42] Length = 176 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72 V+IL Q N+G + R + + + + + K S+ + +ID+ + Sbjct: 31 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 90 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L F ++++ ++I G V ++ G E G+ Sbjct: 91 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 135 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E ++ S+ ++ P+ SLN + + ++++E + Sbjct: 136 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 173 >gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26] gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932] gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55] gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34] gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79] gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196] gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291] gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196] gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291] Length = 265 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72 V+IL Q N+G + R + + + + + K S+ + +ID+ + Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 179 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L F ++++ ++I G V ++ G E G+ Sbjct: 180 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E ++ S+ ++ P+ SLN + + ++++E + Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262 >gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630] gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile] Length = 226 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72 V+IL Q N+G + R + + + + + K S+ + +ID+ + Sbjct: 81 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 140 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L F ++++ ++I G V ++ G E G+ Sbjct: 141 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 185 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E ++ S+ ++ P+ SLN + + ++++E + Sbjct: 186 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 223 >gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533] gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533] gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 185 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 18/161 (11%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L+ + T + + + ++ +FG+E GL Sbjct: 60 MHDDLEAFLN--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P++ N+S +V +++ E + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQ 152 >gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4] Length = 234 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + N + IIL N+G + R+M F L L++ + K +S A Sbjct: 84 EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVRASMGAFF 143 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +++ F NL++ + NN E++ L + F + + FG Sbjct: 144 KL-NIQKFDNLEDYKKNF----------PNNKIYSFLLDESSNELRDVKFD-EPFSLAFG 191 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GL E + I + SLN+ A + ++E Sbjct: 192 NEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230 >gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804] gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii] Length = 258 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 18/171 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P L P++ L Q N+G + R + + L++P S K Sbjct: 100 PPTPALPARLDEPMVWLDRVQDPGNVGTILRVCAAAGIGR-VLLSPGCAAAWSPKVLRGG 158 Query: 62 ANADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + ++L+ L + ATT + + P A Sbjct: 159 QGAHFALALHE-HADLQACAQRLEIPLAATTLEGAQDLYATRLPPACA------------ 205 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E G+ + + P SLN++ A L ++E Sbjct: 206 --WVFGHEGQGVAPALQQAAALRVRIDHAPAVESLNVAVAAALCLFEQRRQ 254 >gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1] Length = 265 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 33/178 (18%) Query: 6 PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L +K P+I LV P+ NIG + R ++ + + NP+ + SS Sbjct: 107 EALTLKSKNPLI-LVAEAPEKPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVG 165 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--- 120 VF+ A++ N + K + + + + Sbjct: 166 --------CVFTT--------EIAMASS-----NDAILYLQKYNFNLFSAILQESEPYHT 204 Query: 121 ------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GLT + IS P++ + S+N+S A ++++E Sbjct: 205 QDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDSMNVSVAAGILIFEAKRQR 262 >gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 255 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 19/177 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQ 253 >gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] Length = 265 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 22/169 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARS 59 + P ++ + L D + N+G + R+ F + + L +P P +A Sbjct: 104 LEPRGALPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYL-SPATPTPDHPRAAR 162 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++ V+ R+ + R +LA + ++ F + Sbjct: 163 TARGTQHVLPWERLPAE----------------RLGGLGLPILALETGGTPIDTYPFPPE 206 Query: 120 NVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G++ E +AL+ +S P+ SLN+S A +++ Sbjct: 207 GI-VVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254 >gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang] gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang] Length = 259 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 20/158 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +++ T ++ K + + ++ G E G++ Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L +A I+ P+ SLN S A +++++ + Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASRHEEK 259 >gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas ingrahamii 37] gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas ingrahamii 37] Length = 246 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 29/176 (16%) Query: 7 QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 L S P IL N+G R+ + + + P+D + R + Sbjct: 89 SLLESLTAPPFLLILDGVTDPHNLGACLRSADAAGVHAVII--PKDNSASLTPVVRKVAC 146 Query: 63 NAD------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A V + R +L++ +IY T A Sbjct: 147 GAAESVPLIHVTNLARAMRSLQDK---GVWIYGTAG--------------EATQSLYDCK 189 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL + +I P+ SLN+S A + ++E + Sbjct: 190 LEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEVVRQR 245 >gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334] gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 259 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +++ T ++ K + + ++ G E G++ Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A I+ P+ SLN S A +++++ + Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 255 >gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 322 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73 + L + N+G V R++ F + + R + A +SA A + R + Sbjct: 176 VALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNL 235 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 LK+ + + + V I+ G E GL+ Sbjct: 236 TRTLKDWQSKGVQVVGL--------------DAGGDTSLDNYEGTGPVVIVVGSEGKGLS 281 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++I+S P+ SLN S A +++ E Sbjct: 282 RLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQR 320 >gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 321 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 17/159 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73 + L + N+G V R++ F + + R + A +SA A + R + Sbjct: 175 VALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNL 234 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 LK+ + + + V I+ G E GL+ Sbjct: 235 TRTLKDWQSKGVQVVGL--------------DAGGDTSLDNYEGTGPVVIVVGSEGKGLS 280 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++I+S P+ SLN S A +++ E Sbjct: 281 RLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQR 319 >gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23] gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei LC2W] gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei BD-II] Length = 259 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +++ T ++ K + + ++ G E G++ Sbjct: 177 TLKERSMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A+I+ P+ SLN S A +++++ + Sbjct: 222 LMDAMIAIPMVGHVQSLNASVAAGILMYQAFASR 255 >gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str. MIT 9215] Length = 326 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N A ++ L N+G + R+ F+ + + R + +A A + Sbjct: 176 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHLQ 235 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV NL A+ L I + + + +I Sbjct: 236 VSRVV-NLNRALEVLKKNGFLIVGLSG--------------DGQLSLSNFSEIVPLVVIV 280 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ + ++S P+ SLN S A + ++ Sbjct: 281 GSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325 >gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 229 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 39/217 (17%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + ++L D N V R F + L ++ R + + ++ + A Sbjct: 30 LAERTRHFTVVLEDIYQPHNASAVVRTCDIFGVQDLHVIENR--YINRVSKYVTKGAQKW 87 Query: 68 IDSVRVFSNLKEAIADL--HF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 I + + + + H I AT+ P A +L + + Sbjct: 88 I-TTKRYKTDGDNTKTCLNHLKTAGYQIIATS------------PHADANLLQD-FKIDK 133 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-----------WEC 168 +FG E G+++ ++ + P+ S NIS A +++ + Sbjct: 134 KTAFVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISVAAAIILQDVTTRLKNSRIDW 193 Query: 169 MENSIVSSE---KNVKEQNTPATKGELLSFLDYLEIS 202 M ++ + + +KE TK E F LE Sbjct: 194 MLSNDEKEQLYLQWIKETIKNVTKIE-ERFYQQLEDE 229 >gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella anatipestifer RA-YM] gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD] Length = 231 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153 R ++P+ A +L + + ++FG E G+++E + ++ ++ P+ Sbjct: 110 ERGYKIVAVSPENNATMLPDYKVE-TPIALVFGTEWEGVSDELLDFADETLAIPMYGFTK 168 Query: 154 SLNISQAVLLMVWECMENSIVSS 176 S N+S A + ++E + + S+ Sbjct: 169 SFNVSVAAAICMYELKQKLLNST 191 >gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 236 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 12 AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 AK +I+L D + N+G + R + + + R + S A I++ Sbjct: 84 AKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGKHRSVGLTSTVAKVSTGA---INT 140 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+V EA + + A + V A V + ++ G E Sbjct: 141 VKV----AEA---TNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNVDMPLVLVVGSEGK 193 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + + + P+ SLN+S A +++++ + Sbjct: 194 GISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRR 235 >gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster] gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster] Length = 407 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71 ++ + + N+G + R +Q+ + + KA I Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294 Query: 72 RVFSNLK-----EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L EA D H A T R R N +++ + G + +I Sbjct: 295 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGL--------GAHNLLII 346 Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ E N I P+ SLN++ A+ L+++E Sbjct: 347 GGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397 >gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1] Length = 266 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 20/170 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + V++L N+GM+ R+ L + L PR G P+ Sbjct: 112 DLGSRRPASVLVLDAVTNPSNVGMILRSATAAGLDGVLL--PRRGVPA------------ 157 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARN----RNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ID + + ++ A A T A R+ SV + L + V Sbjct: 158 -IDPLVIKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLDTGSGSLLDAELP-HRVA 215 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GLT + + I+S P+ SLN++ A + +E + Sbjct: 216 LVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAAYELLRRR 265 >gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V++L + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 +D +V +NL + I L ++Y A + Sbjct: 139 IEYVDISKV-TNLSDTINKLKKLDYWVYGAAG--------------EANISYNEEDYSNK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545] Length = 184 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 25/171 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-----SSSANADCVIDSVRVFSNLKEA 80 N+G +AR F + + LV KA ++N + + +L A Sbjct: 11 HNVGTIARCATAFGVRAVVLVG-------AKAYNTFGCKGASNHVDFLH----YPSLHAA 59 Query: 81 IADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L TA K + + + A+ ++ER F G + I G E GLT+ + A+ Sbjct: 60 REGL------TAPPHRVRKIMGVEIMDDAVAIDERPFEG-STAFIMGNEGDGLTDAQKAI 112 Query: 140 SNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 + + + SLN+S A +++ + E+ A + Sbjct: 113 CDGFVYIRQHGVGTASLNVSVAASIVMHHFALWAAYPERGREGEKFVVAER 163 >gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans WP3] gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3] Length = 247 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 17/161 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75 IL N+G R + + + P+D + + A ++ +V + Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTPVVSKVACGAAEIVPLYQVTN 158 Query: 76 NLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 A T R+ ++ + A + + I G E GL Sbjct: 159 ------------LARTMRSLQDKGIWIAGAAGEADSDVYQASLTGPLAIAMGAEGKGLRR 206 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +++IS P+ SLN+S A + ++E + + Sbjct: 207 LTRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRLAK 247 >gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107] Length = 229 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+WGL+++ L + + P+ + SLN+S A +++E + + Sbjct: 114 GPTAFVLGAEKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAAGVA 173 Query: 179 NVKEQNTPATKGELLSFLDYLEISLEE 205 + + A ++ + L E Sbjct: 174 PSRGEGLTA---------EHYQRLLLE 191 >gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573] gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603] gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603] gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573] gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC341] gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus MB-451] gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus VM223] gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. RC586] Length = 246 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P+ SLN+S A + ++E + + + Sbjct: 207 TRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246 >gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis] gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114] Length = 176 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 19/162 (11%) Query: 17 IILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVF 74 IIL P++ N + R F +L ++ P A + + V Sbjct: 4 IILYQPEISPNTSNIIRTC--FAGNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEVH 61 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N +E D + Y T R K+ + + + + + I+FG E G Sbjct: 62 ENYEEFFKKYGDKNIYYVT----RYGLKNYVDVDY-----KQELQTNGELWIMFGTESTG 112 Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + I +N + P+ SLN++ +V ++++E + Sbjct: 113 IP-KRIMQTNIPNCLRIPMFDECRSLNLANSVAIVLFEVLRQ 153 >gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 17/171 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 N + I L + + N+G + R + F+L + ++ ++ S A Sbjct: 81 RSTGNPSWPISIYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAY 140 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ + N E + DL L E AI L E IF ++ ++ Sbjct: 141 ---QWVKCYQN--EDLNDLT-----------QPIIALETSEEAINLYEFIFP-EHFTLVV 183 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E +G + E + ++ +I P+ SLN++ A + E + Sbjct: 184 GNEEYGCSQEILTKAHYLIEIPLRGRKNSLNVANAFAITAGEIYRQRKTAK 234 >gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris TIE-1] Length = 151 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 29/170 (17%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L P + +N G + R A N + ++ P G+P+ + +D V + Sbjct: 2 RIALFQPDIPQNTGTILRFCACLNV---EAHIIEP-AGFPTSDRHFRRSG-MDYLDQVSI 56 Query: 74 FS-----NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ A I TT R F+ P + ++ G Sbjct: 57 VRHDSWLKFEQWRKTAGCRLILLTTKGERPYFEQRYQPTDV---------------LMLG 101 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 RE G+ ++ A ++A + P+ P SLNI+ A ++ E + + + Sbjct: 102 RESAGVPDDVAAAADARVVIPMQPGLRSLNIAMAAAVVTGEALRQTQFAQ 151 >gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium castaneum] gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum] Length = 403 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 34/195 (17%) Query: 2 TPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 TP + P+ ++ + + N+G + R ++ L K Sbjct: 216 TPPVEAFEPVNPLPITVICDNIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRG 275 Query: 61 SANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115 + A + + + + D F A +++ ++ L E + Sbjct: 276 AVGAHFKLKIEKKEWDEIGDEVD---PDAKFFIA--------DNRIVSSEDTGGDLGELL 324 Query: 116 -------------FSGQNVGIIFGRERWGLTNEEIALS----NAIISFPVNPLFPSLNIS 158 + ++ ++ G E G++ L+ A ++ P++ SLN+ Sbjct: 325 GKIPIVPYFGVDFRTSNHLVVVVGGETLGVSKNSYELALRSNGARLNIPLSNDVDSLNVG 384 Query: 159 QAVLLMVWECMENSI 173 A+ ++ +E + + Sbjct: 385 AALGIIAFEIKKQLL 399 >gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 266 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 16/163 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+ L +N+G + R F + L + KA S A + Sbjct: 118 PPARALVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVP 177 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 R L E T R L+P + E + ++ G Sbjct: 178 FARGGDASTLIE-----------TLTARGFDILALSP--SGEREIETVKRAPRTAVLLGA 224 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL +A + + P+ F SLN++ A + + Sbjct: 225 EGPGLPAALLARLPS-VRIPMRNDFDSLNVAAATAIALHRLWR 266 >gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio orientalis CIP 102891] Length = 245 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 27/165 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADC------VID 69 +L N+G R + +V P+D + A + A V + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAESVPLVRVTN 157 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R L+E + + T A + + I+ G E Sbjct: 158 LARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEG 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G+ + +I P+ SLN+S A + ++E + + Sbjct: 201 DGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLE 245 >gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton thalassium ATCC 35110] Length = 243 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 33/176 (18%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++K ++IL + N+G + R A +++ +A + Sbjct: 89 PRNSKQLIVILDGLEDPHNVGAIIRT----------------------AEAAAVDAVIIP 126 Query: 69 D------SVRVFSNLKEAIADLHF--IYATTARNRNNFKS---VLAPKEAAIVLNERIFS 117 + V A++ + + + K V I Sbjct: 127 HDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYYEIDF 186 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + I+ G E G+ +A+I P+ SLN S + + ++E M + Sbjct: 187 NDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQRL 242 >gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella vestfoldensis SKA53] Length = 258 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 19/158 (12%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L+ P I+L+ N+G + R+ F R V + + + + A Sbjct: 102 ALREGPMPPRIVLLDRVTDPHNVGAILRSAEVFGA---RAVVAMQRHAAPETGALAKTAS 158 Query: 66 CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--- 120 ++ NL ++I +L VL A E G+ Sbjct: 159 GALERQPYLRVRNLADSIVELQ----------QMGYLVLGLDGEAETTIEEAVEGKRDRA 208 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 V ++ G E GL ++ + ++ + F SLN+S Sbjct: 209 VALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVS 246 >gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH [Prochlorococcus marinus str. MIT 9313] gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 535 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 19/167 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ + L R + +A A + RV + +L EA+ Sbjct: 282 PHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSL-EAL 340 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + E + + + I+ G E+ G++ Sbjct: 341 KQAGYRVIGLA--------------EEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHC 386 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 + ++ P+ + PSLN S A + ++E + A Sbjct: 387 DQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMKGVHGQTPSPRIA 433 >gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402] Length = 246 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 VI L Q N+G + R L + + ++K +S + I + Sbjct: 107 VIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRASQGSVFHIP--VIEM 164 Query: 76 NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E + + IY T+ ++K V+ I+ G E G+ Sbjct: 165 DFDEVSSKFNGTIYGTSLEEARDYKEVIPSDNFM--------------IVLGNEGQGVNP 210 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E ++ ++ + P+ SLN++ ++++ ++ Sbjct: 211 EILSATDENLYIPIYGRAESLNVAVCAGILMYHFVK 246 >gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 20/163 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL Q N G + R +TQ+ L + K S+ A ++ V Sbjct: 125 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIVTHCQP- 183 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +E + R++ V L E F+ Q + ++ G E G + Sbjct: 184 EEILKVC----------RSHKIPVFVGDVEGTDLYETHFA-QPMALVVGNEGNGPS---- 228 Query: 138 ALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 A I+ P++ SLN++ A ++++E ++ Sbjct: 229 AAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRMTSTT 271 >gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323] gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323] Length = 209 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 29 VVLYEPLMPANTGNIARTCAGTNTILD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 83 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L + T + + + ++ +FG+E GL Sbjct: 84 MHDDLDAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 135 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + + P++ N+S +V +++ E + + + Sbjct: 136 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 186 >gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4] gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22] gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase LGAS_1346 gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4] gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22] Length = 185 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTILD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L + T + + + ++ +FG+E GL Sbjct: 60 MHDDLDAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + + P++ N+S +V +++ E + + + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 162 >gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC 49242] Length = 278 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 15/155 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 G V+ L N+G + R F + L + + E + A ++ Sbjct: 121 EPKSGIVLALDQITDPHNVGAILRTACAFGVDALII---TERHSPEFTGVLAKAASGALE 177 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V + S NL A+ +L R V+ E I + + ++ G Sbjct: 178 HVTIVSVVNLARALDEL----------RGAGYGVVGLDSEGAEPLETIALPKPLALVLGA 227 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 E GL +AI + SLN+S A Sbjct: 228 EGKGLRRLTRERCDAIARLDLPGPIKSLNVSNACA 262 >gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4] Length = 247 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 28/152 (18%) Query: 23 QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 Q NIG + R + + V+P + K S+ + + V NL Sbjct: 100 QDPGNIGTMIRTADAAGFDGVIMGEGTVDPY----NPKVLRSAQGSHFHLP--IVNKNLV 153 Query: 79 EAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 E + +LH ++ T+ +N +++ VL P +I G E G+ Sbjct: 154 EVVQELHDNGFDVFGTSLQNGEDYREVLFP--------------AKFALIMGNEGNGMQE 199 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + P+ SLN++ A ++++ Sbjct: 200 TLLHATTKNLYIPIFGKSESLNVAVAAGVLMY 231 >gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51] Length = 247 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I P+ SLN+S A + ++E + + + Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVRQRMANR 247 >gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM 6578] Length = 265 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 24/171 (14%) Query: 1 MTPYAP-QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKA 57 ++P +L P+ + L D + N+G + R+ F + + L +P P +A Sbjct: 102 LSPEPRGELPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYL-SPATPTPDHPRA 160 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++ ++ R+ + + + V+ + ++E F Sbjct: 161 ARTARGTQHLLPWRRLAPD----------------QVGSLGLPVIVLETRGTPVDEYTFP 204 Query: 118 GQNVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMV 165 Q + ++ G E G++ E +AL+ +S P+ SLN+S A +++ Sbjct: 205 EQGI-VVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254 >gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum L-1] Length = 265 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 17/173 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP A +L + I+ + N+G + R L L++ S ++ + Sbjct: 104 LTPLA-KLDRTKADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162 Query: 61 SANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 S A I R + + T+ P+ + Sbjct: 163 SMGALFTQPITQARWGEFMHWLRQGPGELIGTSL---KATHDYQEPRYQSP--------- 210 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E GL A + ++ P+ SLN + A +M +E + Sbjct: 211 --SFLLVGNEAQGLPESYEAECDLLVKMPMLGKADSLNAAVACAVMAYELLNQ 261 >gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1] gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1] Length = 230 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 24/178 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKARSSSANADCVIDSVRVFSNL 77 N+ + R + + V P+ +G E S+ V S + Sbjct: 32 PHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGSAHKWVKVHPHADAVSAV 91 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +E A + AT R+ P + ++ G E+WG+++E Sbjct: 92 RELQAQGFQVLATHLSQRSVD--YREPDYT-----------KPTCVLLGAEKWGVSDEAA 138 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 ++A I P+ + SLN+S A +++E + + + + EL Sbjct: 139 EAADANIVIPMFGMVQSLNVSVAAATILFEAQRQRLAAGMYEEPQLSP----EELHRL 192 >gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27] gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist] Length = 263 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +I G E G+++ + +++ P + SLN+S AV + ++E Sbjct: 216 LIVGSEGSGISHLVKKHCDELLTIPTDASVDSLNVSVAVSIALYELQR 263 >gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712] Length = 319 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 30/177 (16%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ L N+G V R++ F +V P +A +A A Sbjct: 161 AFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWK 213 Query: 67 ----------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 V + + L++ + A + ++E Sbjct: 214 TSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAA-------------DGDREVHELEE 260 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G V I+ G E GL+ + ++ P+ SLN A ++++E + Sbjct: 261 LGGPVVIVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRRM 317 >gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855] gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855] Length = 247 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 14/173 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+ N+ V R+ + +V+ + + ++ ++ A +D V+ Sbjct: 64 LVNT---GNVSAVMRSAEALGHQDMHVVS-GEHDRYKHSQRTAQGAQHWLD---VWH--- 113 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D AT ++ + + + + F+ Q ++FG E G+T+ + Sbjct: 114 ---WDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFT-QPTALVFGNEDAGVTDTMLE 169 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 S+A P+ S N+S A + ++ ++ + + + + E Sbjct: 170 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQDRLDRQGHHADLSDEARARLE 222 >gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405] Length = 262 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + NIG + R +F + ++ L + S KA+ ++ + R ++L E++ Sbjct: 128 RTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--ADL-ESLP 184 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN- 141 DL I T +++ F + + ++ G E G++ E + + Sbjct: 185 DLPLIVLETG---------------GTDISKFEFPKKGI-VVIGSEELGVSPEAVKKAQG 228 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +I+ P+ + S+N+S A + + + E Sbjct: 229 RVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262 >gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces brasiliensis DSM 5305] Length = 259 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 10/152 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N G + R + ++ R+ S SSA A I V NL++ + Sbjct: 116 QDPFNFGAIVRTAAALGVEG-VIIGTREQAAISSHVVRSSAGAVNHIPICEV-DNLQDTL 173 Query: 82 ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + A N +V + F+ + +I G E G+ + Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPE------FAHSPLLLIIGNEARGVAPALLERC 227 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN + A ++++ N+ Sbjct: 228 STTVHIPMQGAVESLNAAVAAGILMFALRANA 259 >gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RS9916] Length = 229 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+WGL++ L + + P+ + SLN+S A +++E + + Sbjct: 114 GPTAFVLGAEKWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLFEAVRQRRAAGVL 173 Query: 179 NVKEQNTP 186 + + P Sbjct: 174 PSQGEGLP 181 >gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes] Length = 1621 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TAR+ + + P + ++ G ER G+ I Sbjct: 1533 KKTEGYTIIGVEQTARSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621 >gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B] gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus cellulolyticus 11B] Length = 250 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 14/145 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82 N+G + R+ F + + L R + +SA A + RV + + A+A Sbjct: 109 PRNLGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALA 168 Query: 83 DLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + +A I G V ++ G E GL+ Sbjct: 169 ERNVTVVGLSADGDTT-----------IQQAADDAGGGPVALVVGAEGRGLSRLVREKCT 217 Query: 142 AIISFPVNPLFPSLNISQAVLLMVW 166 + S P+ SLN+S A + ++ Sbjct: 218 VVASIPMTGTVESLNVSVATGIALF 242 >gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length = 270 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 21/149 (14%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + AD + S + Sbjct: 131 ENLGSIFRNAAGLGV--------------DAVIFGAGCADPLYRRAVRVSMGHALLVPFA 176 Query: 86 FIYA-----TTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIA 138 A T R++ + P AA L +G+ V + G E GLT + Sbjct: 177 RAAAWPDELNTLRDKGFQLLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMR 236 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE 167 S+ + P++ SLN++ A L +E Sbjct: 237 ASDRRVRIPMSRGTDSLNVATAAALAFYE 265 >gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter splanchnicus DSM 20712] Length = 247 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 20/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N G + R+ + + + N S A +SA A + RV NLK + +L F Sbjct: 111 NFGAIVRSAECAGVDVVIIPNKNSAKISSDALKTSAGALYHVPVCRVL-NLKRVVRELKF 169 Query: 87 -----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +YA T E A II G E G+ E I ++ Sbjct: 170 QRGIRVYAAT--------------EKAEKFYTGADLTLPTAIIMGSEDKGIDEELINIAT 215 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P SLN+S A ++++E + Sbjct: 216 DCIKIPQKGQIESLNVSAAAAVLLFEVVRQR 246 >gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 286 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + L+ S + ++ + + R + Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVAR--AT 192 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E IA + + AT +++++ K + V ++ G E+ G Sbjct: 193 PEEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + ++A+ P SLN++ A +M++E + + +E Sbjct: 239 LPEQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284 >gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1] gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum K10] Length = 247 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---SNLKE 79 + N+G + R + + R + +SA A +V + ++E Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEE 166 Query: 80 AIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L F+ A + R+ +G++ G E G++ Sbjct: 167 LKERGLWFVCA----------------DMGGESMYRLNLKGPIGLVIGNEGEGVSRLVKE 210 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + S P+ SLN S A ++ +E + Sbjct: 211 KCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244 >gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91] Length = 278 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 24/161 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L Q N+G + R+ + L + S K + A + R+ Sbjct: 127 CIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSL---RIHE 183 Query: 76 NLKEAIADLHF---IYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + F + AT +N + P A FG E Sbjct: 184 DSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFA----------------FGNEGC 227 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G++ E + + ++ P+ SLN++ A + ++E + Sbjct: 228 GVSEELLEVVRERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268 >gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII 345-E] Length = 261 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 19/154 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + Q N+G + R + + L SEKA SS + I V S Sbjct: 120 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVST 179 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 E I + F T+ ++ + +I IFG E G+ Sbjct: 180 -DELIKWKNETNIFFVGTSLQDAEPY--------------TQISLSGCCMFIFGNEGNGV 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + +S+ I P+ SLN+S A ++++ Sbjct: 225 SQKILNISDKKIYIPLKSNVESLNVSIATAVILF 258 >gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 186 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 18/180 (10%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 ++L +P + N G +AR N L L+ P K + D VR Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L + L + S + K A V + +N +FG+E GL Sbjct: 60 MHDDLDAFLKTLG------PNDEMYLISKFSSKNYAEV--DYTDPKKNYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + + P++ N+S +V +++ E + + + K + Sbjct: 112 PETFMREYYDRNLRIPMSNNIRCYNLSNSVAMVLLEALRQQGFPNMETAHHYENDKLKDD 171 >gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 35/174 (20%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-------- 57 + + S +++ V + N+G V R+ + LV S + Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAG-AEAVLVAGGVDLYSPQVIRNSTGVV 166 Query: 58 ---RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 R+ +A+ V+D ++ NL + ATT P A+ Sbjct: 167 FSLRTLAASESEVLDWIKQH-NLP--------LVATT------------PHAEALYWEAN 205 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + V I G E GL + + + P+ SLN+S + L+++E Sbjct: 206 LRP--PVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEA 257 >gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 292 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ L P G P +A S I R+ Sbjct: 137 NVGALMRSAAALDV-DAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 F + E + A +R+ L + A E + +IFG E Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLAMIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL++ IA ++ + P++ SLN++ + + + Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289 >gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833] gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM 43833] Length = 184 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 24 LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G V R F + +RL KA+ ++ D +++ + +AIA Sbjct: 39 GPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEWHAPVP-VTQAIA- 96 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R + A+ + E G +V ++ G E G++ + ++++ Sbjct: 97 -------AMREDGYRIVAVEITGDAVPIYEADLDG-DVCLLLGAEEHGVSPAALEAADSV 148 Query: 144 ISFP 147 + P Sbjct: 149 VYIP 152 >gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC 49176] Length = 259 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 42/176 (23%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----- 70 +I+L D + N+G + R A + A+ + Sbjct: 111 IIVLDDIEDPHNLGAIIRT----------------------ANQAGAHGVIIPKRHAVGL 148 Query: 71 -VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---------N 120 V AI Y A+ N +++ KE I SG+ Sbjct: 149 TATVARTSAGAIN-----YTPVAKVTNISRTIEELKEKGIWFACADMSGELMYNCNLTGA 203 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +G++ G E G++ + ++ P+ SLN S A ++ +E + + + Sbjct: 204 IGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSYEIVRQRMNTK 259 >gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. NATL2A] gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 229 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E+WG++ E +L + I P+ + SLN+S A +++E + V+ Sbjct: 114 GPTAFVLGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEALRQRQVA 170 >gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025] gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 15/148 (10%) Query: 15 PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS-SSANADCVIDSV 71 P+++L+ N+G V R+ F +V P R P A + +++ A + Sbjct: 112 PLVVLLDRVTDPHNVGAVLRSAEVFGAR--AVVAPHRHSAPETGALAKTASGALERQPYL 169 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERW 130 RV NL E + L I L + A + +G+ VG++ G E Sbjct: 170 RV-GNLAETMERLKAI--------GYMLLGLDSEAPATLAEGLAIAGKRPVGLVLGAEGP 220 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNIS 158 GL ++ + ++ P F SLN+S Sbjct: 221 GLRDKTRDTCDVLVRIPAAGGFGSLNVS 248 >gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 312 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 16/163 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G ++L + N+G V R+ F + + R + A +SA + R Sbjct: 160 TGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAR 219 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +KE + + + A + L+ + V I+ G E Sbjct: 220 ATNLTRTIKEFKDNGYMVVGLDAGGEHT-------------LDTFDGATDPVVIVVGSEG 266 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + I+S P SLN S A +++ E Sbjct: 267 KGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQR 309 >gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 181 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 19/167 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69 + + I+L P++ +N+G + R N +L ++ P ++ S SAN +D Sbjct: 2 NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60 Query: 70 SVRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +R + + + I ++ +R K + + NV ++FG Sbjct: 61 CIR-YDDWNDFITKHPNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFG 107 Query: 127 RERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +E G+ + N P+ SLNI+ V + +E + Sbjct: 108 KESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154 >gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8] Length = 258 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 14/173 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+ N+ V R+ + +V+ + + ++ ++ A +D V+ Sbjct: 75 LVNT---GNVSAVMRSAEALGHQDMHVVS-GEHDRYKHSQRTAQGAQHWLD---VWH--- 124 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D AT ++ + + + + F+ Q ++FG E G+T+ + Sbjct: 125 ---WDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFT-QPTALVFGNEDAGVTDTMLE 180 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 S+A P+ S N+S A + ++ ++ + + + + E Sbjct: 181 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQDRLDRQGHHADLSDEARARLE 233 >gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 255 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 19/177 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQ 253 >gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 296 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 42/165 (25%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-------------------AD 65 N+G + R+ + + L +A S A Sbjct: 151 PTNVGAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAM 210 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V+ + + A+ D +E++ S + + I+ Sbjct: 211 DVLHKLG-YKTAAMALRDDSVCI----------------------DDEKMMSEEKLAIVL 247 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E GL + IA + + P+ SLN++ A + W+ Sbjct: 248 GTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292 >gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1] Length = 218 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E + + I FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLL 177 >gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS 571] Length = 281 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 14/168 (8%) Query: 5 APQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 AP+L S + V+ L +N+G + R F + L + KA S Sbjct: 123 APELLASLPERALVVALQGIANHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSV 182 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ + R A L+P + I G Sbjct: 183 GASLIVPTAR---------AGTTAEMMEAIAAAGFDLVALSP--SGRERLSDIVPGGRQA 231 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E GL E +A S IS P+ F SLN++ +++ Sbjct: 232 ALFGTEGPGLPPEVLA-STRTISIPMAASFDSLNVATTSGIVLHHLSR 278 >gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785] Length = 253 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + K + S + I + + Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAI+ N ++ + + ++ G E G + E Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEV 220 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++ I P+ SLN + A +M++ Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 253 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + K + S + I + + Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + EAI+ N ++ + + ++ G E G + E Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEV 220 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++ I P+ SLN + A +M++ Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM 1131] Length = 364 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ + ID+ + L + Sbjct: 225 PHNLGGIMRSCAHFGIKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRK 284 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ + + ++ G+E GL++ + Sbjct: 285 AGYTIVTTSS-------------HKGSQDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDM 331 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + SLN+S A +M+ + + Sbjct: 332 SLYIGGTGKVESLNVSVATGIMLAQWWQQ 360 >gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ FN+ + L P PSE +S+ A +I V V N+ AI L Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + L++ + + +IFG E GL + ++ Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 + SLN+S A + ++ Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244 >gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel] gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 249 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ FN+ + L P PSE +S+ A +I V V N+ AI L Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + L++ + + +IFG E GL + ++ Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 + SLN+S A + ++ Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244 >gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 249 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ FN+ + L P PSE +S+ A +I V V N+ AI L Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + L++ + + +IFG E GL + ++ Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 + SLN+S A + ++ Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244 >gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-049-V-Sch6] Length = 245 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 26/172 (15%) Query: 9 QNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +++ + P++IL V+ N+G + R T L+ R P Sbjct: 87 ESNHENPLLILTDGVE--DPHNMGAIIRTAECVGATA-VLIPKRHNAPI----------- 132 Query: 66 CVIDSVRVFSNLKEAIADLHFI-YA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + V A+ + + T + + VL Sbjct: 133 ----NATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIP 188 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ + +++ P+ SLN S A ++++E + Sbjct: 189 TVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240 >gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC 700975] Length = 273 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 11/150 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKEAIA 82 ENIG + R ++ + L + ++ S + R F+ + + Sbjct: 124 ENIGSLFRNAAGMDVDGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLE 183 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L R + L P A+ + + + V ++ G E GLT + +N Sbjct: 184 QL--------REKGFRLVSLTPHPDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNV 235 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN++ + + +E + Sbjct: 236 RARIPMAEGTDSLNVATSAAIAFYERQRSQ 265 >gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] Length = 269 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GLT + ++ +I P+ SLN + A ++++E Sbjct: 213 KGTAFLIGNEGNGLTEQLTESADTLIKIPMQGKVESLNAAMASGILMYEAYRQR 266 >gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3] Length = 250 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 12/142 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G +AR+ F + + + R + + ++S A + + + NL +A+ L Sbjct: 107 PRNLGAIARSAAFFGVKYILIPKMRQVLLTPASVATSQGAFAFSE-LVLVPNLGQALEKL 165 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 F + A + I Q V ++ G E G++ S+ ++ Sbjct: 166 ---------KEEGFWVICA-DAKGEKFEKVIGEYQKVVLLLGSEDKGVSELLKKRSDRVV 215 Query: 145 SFPVN-PLFPSLNISQAVLLMV 165 S + SLN+S A +++ Sbjct: 216 SISTDTQTLDSLNVSVAAGILL 237 >gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996] Length = 134 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 29/146 (19%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA--DLHFIYAT 90 N L LV P G+P + A+ A + + V N ++ + + I+A Sbjct: 2 CANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFAKLTVHENFEDCLKALEGRRIFAL 58 Query: 91 TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI-----IS 145 T + + +++ + +FG E GL E + + + + Sbjct: 59 TTKGKTRP--------------DKVSFVEGDVFLFGPETRGLPAEIL---DTLPEGQKLR 101 Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171 P+ S+N+S V ++++E Sbjct: 102 LPMKLGSRSMNLSNTVAVILFEAWRQ 127 >gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500] Length = 637 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 32/204 (15%) Query: 15 PVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNP-------RDGWPSEKARSSSANA 64 P+++L V+ NIG + R+ +F + + N R S + +S A Sbjct: 372 PIVVLLDNVE--NPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLSTSSYRASRGA 429 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYA-------------------TTARNRNNFKSVLAPK 105 +D V + EAI + A + + + +P Sbjct: 430 MEYVDVVPI-DIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEVVSSKLPSPI 488 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 ++ + I+FG E G++ + LS + P L LN+SQA+ +++ Sbjct: 489 RLYSDRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVL 548 Query: 166 WECMENSIVSSEKNVKEQNTPATK 189 EC + E + AT+ Sbjct: 549 AECWRLQGRALEDQRQGAPDLATQ 572 >gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae CT 5369-93] Length = 247 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I P+ SLN+S A + ++E + + + Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247 >gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 138 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 20/139 (14%) Query: 44 RLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNF 98 +V P+D + R + A VI V V + L++ ++ T Sbjct: 11 VIV-PKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG------ 63 Query: 99 KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 EA + L ++ +G + II G E G+ + ++ P+ SLN+S Sbjct: 64 -------EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVS 115 Query: 159 QAVLLMVWECMENSIVSSE 177 A + ++E + V + Sbjct: 116 VATGVCLFEALRQRSVKAA 134 >gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 259 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +++ T ++ K + + ++ G E G++ Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGIAK 221 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A I+ P+ SLN S A +++++ + Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 255 >gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395] gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587] gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae 12129(1)] gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae bv. albensis VL426] gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TM 11079-80] gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae TMA 21] gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC27] gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae LMA3894-4] Length = 247 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I P+ SLN+S A + ++E + + + Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247 >gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea 34H] gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia psychrerythraea 34H] Length = 251 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N+G R + Q +V P+D + R + A + V+V + Sbjct: 106 ILDGVTDPHNLGACLRNADAAGV-QAIIV-PKDNAAQITPTVRKVAVGAVESVPLVQVTN 163 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +K+ +I T E L + SG + ++ G E G+ Sbjct: 164 LSRTMKQLQKQGVWIVGTAG-------------ETDTCLYDVKLSG-PMALVMGAEGKGM 209 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN+S A + ++E + Sbjct: 210 RRLTRENCDQLVKLPMAGTVSSLNVSVATGICLFEMVRQR 249 >gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236] gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae RC9] gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae B33] gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae BX 330286] gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae MJ-1236] gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae MO10] gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera CIRS 101] gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae INDRE 91/1] gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK 757] Length = 247 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 15/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G ++ I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-SLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I P+ SLN+S A + ++E + + + Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247 >gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044] Length = 225 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 31/174 (17%) Query: 30 MVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIADLHF 86 + R LT L+ PR G + R + +D + S ++++ Sbjct: 61 AMVRTAEALGLTDAHLIGKPRKG----RGRQTMRGSDRWMNLHSHSSLDTFQKSMKGFVI 116 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 AT P + + +FG E+ GLT+ + + + + Sbjct: 117 YGAT--------PHGNTP-------LHALSLDRPCCFLFGNEKNGLTDAALNICTSHFTI 161 Query: 147 PVNPLFPSLNISQAVLLMVW----ECMENSIVSSEKNVKEQNTPATKGELLSFL 196 P+ S N+S A + + E + + +++E+ + E+ F Sbjct: 162 PMYGFCESFNLSVAAAITLHHAVTEKRKLLASPGDLSIEEK-----QAEIAWFY 210 >gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma alligatoris A21JP2] gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma alligatoris A21JP2] Length = 175 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 29/167 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74 I+L P++ N G + R + +L ++ P K A V+ + V Sbjct: 4 IVLFQPEICPNTGNIVRTCFALG-AKLHIIKPISFDLHPK-YLRRYGAGKVLSDINHEVH 61 Query: 75 SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + K+ ++++I R ++ + V ++FGRE Sbjct: 62 DSYKDFYNKYKNKNIYYI------TRYGLRTY-----TENNFKNEYDKHKEVWLMFGRES 110 Query: 130 WG-----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G L N + + P+ S+N++ +V ++ +E M Sbjct: 111 TGIDKSILQNN-LENC---LRIPMVSEMRSINLANSVCILGFEVMRQ 153 >gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 249 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLGA 249 >gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] Length = 432 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + +A S ++ R E Sbjct: 278 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELK---- 333 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T + + + P+ +A L E G V ++ G E GLT + LS+ Sbjct: 334 -----TLKEKGFRLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVR 388 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 389 VRIPMSRGTDSLNVATAAALAFYE 412 >gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 270 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 17/146 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R+ + + L + +A S + ++ + DL F Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW-TWLDTTLSKLHDLGF 191 Query: 87 ---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 A T ++ S+ P + + + II G E GL+ E IA ++ + Sbjct: 192 RTAAMALT----DDSISIDNP---------LLATEPKLAIIMGTEGDGLSYETIAEADYV 238 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169 + P++ SLN++ A + W+ Sbjct: 239 VRIPMSHDVDSLNVAAAAAVAFWQLR 264 >gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa M567] Length = 328 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV---RV 73 + L N+G + R++ F+ + + R + A +SA A I + Sbjct: 179 VALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNL 238 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++A F+ I L + + + ++ G E GL+ Sbjct: 239 TRVLQQAKEQGIFVIGLDGGGD-------------IDLPNLQLASEPLCVVVGSEGKGLS 285 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+S P++ SLN + AV + +++ + S Sbjct: 286 RLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328 >gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 246 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + A + A + +RV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANINATVSKVACGAAETVPLIRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEQGVWFVGTAGEATQDIYQAKLTGA-LAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P+ SLN+S A + ++E + + Sbjct: 207 TRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVRQRLAQ 246 >gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium arabaticum DSM 5501] Length = 243 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 12/164 (7%) Query: 10 NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 N P+ IL+ + + N G + R + + R + +SA A I Sbjct: 87 NKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHI 146 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V +NL A+ +L + N + A + +GI+ G E Sbjct: 147 PVAQV-TNLVRAMEEL----------KENRFWIAGADMEAEGFCYQQDLTGPLGIVIGSE 195 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + +I P+ SLN + A ++++E + Sbjct: 196 GAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQR 239 >gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense DSM 16994] gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense DSM 16994] Length = 225 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R+ + + L + +D R+SS A + + + Sbjct: 85 IVVLSSITDMGNIGSLIRSAYALGVQALVISGIKDPNLEAMIRTSSGAALDLP--LVIIH 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ + + +L + + + + + E F+ + V ++ G E GL+ Sbjct: 143 NIHDVLHEL----------KQSGFQIYGAVMDGVDVREASFAAKRV-LVLGNEGEGLSGR 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164 + IS P+ F SLN+ A ++ Sbjct: 192 VQKSLDVGISIPMAHDFDSLNVGVAGAIL 220 >gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora curvata DSM 43183] Length = 306 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 37/183 (20%) Query: 6 PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 +L P+I+ N+G + R+ F + + + RS+ A Sbjct: 147 EELLQRGTPPLIVACDGITDPRNLGAIVRSAAAFGANGVVI---------PERRSAGVTA 197 Query: 65 DCVIDSVRVFSNLKEA-------------IADLHFIYATTARNRNNFKSVLAPKEAAIVL 111 S +NL A A F+ +R AI + Sbjct: 198 GTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGC-FVAGLDSRG-------------AITV 243 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + ++ G E GL+ + + + P+ SLN A + ++E Sbjct: 244 ADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIALYEIARR 303 Query: 172 SIV 174 Sbjct: 304 RAA 306 >gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 245 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ S ++IL N+G R + + R + A + A V Sbjct: 90 LEGSENPLLLILDGVTDPHNLGACLRNADAAGAAAVIIPKDRAAQLTATASKVACGAAEV 149 Query: 68 IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + VRV +NL A+ D +I T A + I Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYHSKLTGPLAI 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + +I P+ SLN+S A + ++E + Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1] Length = 277 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 19/178 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ + V +L + N G V R + L + + K+ +S + Sbjct: 106 EEILRARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 165 Query: 66 CVIDSV------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R S L+EA + A A R+ + + G Sbjct: 166 FHLPVAVGVPVERAVSGLREA--GARVVAADGAGERDLDTEL-----------DEGVLGA 212 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 IFG E WGL AL++ ++ P++ SLN++ A + ++ Sbjct: 213 PTAWIFGNEAWGLPEPTRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPGG 270 >gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 245 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 21/161 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + A + A + VRV + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAEAVPLVRVTN 157 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + T A + ++ I+ G E G+ Sbjct: 158 LARTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGSLAIVMGAEGDGM 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + +I P+ SLN+S A + ++E + + Sbjct: 204 RRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRL 244 >gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3] Length = 303 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53 A +L +A+ +L + N G + R+ + L+ P P Sbjct: 139 RAEELCKNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196 Query: 54 -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 E ++ ++S+ F A+ D Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 ++ + S + + II G E +GL+ + I + + P+ SLN+ A Sbjct: 242 --------DDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293 Query: 163 LMVWECM 169 + E Sbjct: 294 VAFRELR 300 >gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212] gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212] Length = 105 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 57 ARSSSANADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVL 111 AR + A + +RV +NL + DL ++ T A Sbjct: 4 ARKVACGAAETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATET 48 Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + ++ G E G+ + +IS P+ SLN+S A + ++E Sbjct: 49 IYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEI 105 >gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum DSM 14365] Length = 267 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 11/145 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ + L R S SA A I +V +NL A+ L Sbjct: 121 PHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQV-TNLARALEQL 179 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + + + LA E A L +G + ++ G E GL + +I Sbjct: 180 --------KQAEVWIAGLAAGEGATSLPAFDATGA-LCLVLGAEGTGLRPLVARTCDFLI 230 Query: 145 SFPVNPL-FPSLNISQAVLLMVWEC 168 P+ SLN+S A + ++E Sbjct: 231 EIPMLGAGVGSLNVSVAAGVALYEV 255 >gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio furnissii CIP 102972] gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 246 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAAETVPLVRVT- 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G + I+ G E G+ Sbjct: 157 ---------NLARTMRALQEKGIWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +I P+ SLN+S A + ++E + ++ Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRSLA 246 >gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 12/159 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L + N+G + R + + R + +SA A +V +N Sbjct: 101 ILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKV-TN 159 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L A+ DL + V A + + ++ +G++ G E G+ Sbjct: 160 LTAAMEDL---------KKKGMWFVCA--DMGGDIMYKVNLKGPIGLVVGNEGEGVGKLV 208 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + S P+ SLN S A ++ +E + ++ Sbjct: 209 REHCDMTASIPMKGDIDSLNASVAAGVLAYEIVRQRMMP 247 >gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155] Length = 262 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 22/165 (13%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCV 67 N +I+L + +N+G +AR+ + LV PR G +A S Sbjct: 108 NQLDEQIIMLAELSKNDNVGTIARSAAALGVKS-YLV-PRQGPHPYGRRALRVSMGYISR 165 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + V V+ +L I++L + A A + AI L+ + V + Sbjct: 166 L-KVSVYDDLLNTISELQSLGYQVIAAEAS------------QHAIDLSTLEVPNKWV-L 211 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + G E GL+ + + ++ ++ S N+ A +++++ Sbjct: 212 LMGHEGLGLSQKVQEACDCVVKIEMDEDIKSFNVGVAAAILMYQM 256 >gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + + N+G + R + + R + +SA A +V + Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166 Query: 76 --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E A L F+ A + R+ +G++ G E G+ Sbjct: 167 AKTMEELKARGLWFVCA----------------DMGGESMYRMNLTGPIGLVIGNEGEGV 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + S P+ SLN S A ++ +E + Sbjct: 211 SRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250 >gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 328 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV---RV 73 + L N+G + R++ F+ + + R + A +SA A I + Sbjct: 179 VALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNL 238 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L++A F+ I L + + + ++ G E GL+ Sbjct: 239 TRVLQQAKEQGIFVIGLDGGGD-------------IDLPNLQLASEPLCVVVGSEGKGLS 285 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+S P++ SLN + AV + +++ + S Sbjct: 286 RLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328 >gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24] Length = 314 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 23/170 (13%) Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADC 66 + P+I+ L N+G V R++ F + + R + A +SA A Sbjct: 160 DEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAART 219 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + NL A+ + A + L + V Sbjct: 220 PVARAT---NLTRALEQYQKAGITVVGLAA-------------DGEAELGDLAALDGPVV 263 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ + + P+ SLN A ++++E Sbjct: 264 IVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313 >gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 257 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 23/176 (13%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60 P Q+ N G ++L Q N+G + R +V + + + K S Sbjct: 99 PDVNQVTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAG--VVASKRTADFFNPKVVRS 156 Query: 61 SANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + + V ++LK I D H +Y T L P + Sbjct: 157 MQGSQFHLQ--LVVADLKRWINDFQDDQHPVYGT----------QLNP---LAKNFRHVQ 201 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ ++ G E G+ E + + + P+ SLN++ + +++++ + S Sbjct: 202 PGKDFALVMGNEGQGMAEELLNQTTTNLYIPMRGNAESLNVAVSAGILMFQLNQGS 257 >gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM 17836] Length = 320 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 22/165 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71 ++ L N+G + R+ F LV P R S A +SA A I Sbjct: 170 PLIVALDGVTDPRNLGAITRSAAAFGAHG-VLV-PERRAASVSASAWKTSAGAAARIPVA 227 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 R +NL A+ F+ + + L + + + ++ G Sbjct: 228 R-ATNLNRALKSYKDAGLFVIG-------------LDMDGEVELPDLQAATDPIVLVVGS 273 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL + I+S P+ SLN A + ++E Sbjct: 274 EGKGLARLVRENCDLIVSIPMTSATESLNAGIATGVALYEISRRR 318 >gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] Length = 229 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 15/161 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R + +V P+D + + A + VRV Sbjct: 82 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 138 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + A V EA + + +G ++ I+ G E G+ Sbjct: 139 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-SLAIVMGAEGDGMRRL 188 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +I P+ SLN+S A + ++E + + + Sbjct: 189 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 229 >gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42] gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42] Length = 286 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + L+ S + ++ + + R + Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPVAR--AT 192 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E +A + I AT +++++ K + ++ G E+ G Sbjct: 193 PEEFLAWRKSAGVS-IVATHLAGAVDYRTIDYRK-------------KPTVLLMGNEQSG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L ++ ++A+ P SLN++ A +M++E + + +E Sbjct: 239 LPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284 >gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 V +L + +N+G + R + + + R + S A ++ RV Sbjct: 103 VFVLNEITDPQNLGSILRTADCLGVHGVIIPKRRACGVTPAVVKVSEGAAGYVNVARVTN 162 Query: 75 -SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ E + + + + L V ++ G E GL Sbjct: 163 IASTLECLKEKGLWVVGADMDGEPYHRVDLT---------------GPVALVIGGEDKGL 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ PSLN + A ++ +E + Sbjct: 208 GRLVREKCDLLVKLPMRGHVPSLNAAVAAAVLGYEILRQR 247 >gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1] Length = 126 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 Q+ II G E G+++ + NA I P+ SLN++ A ++++E +I Sbjct: 72 QDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMYEYCRQNI 126 >gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 251 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 18/154 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + R + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ + T ++ + + ++ G E G++ + Sbjct: 169 LKKAGYWFFGTAMEGQDYR-----------YWDAK----GKCVLVIGNEGKGISPLLLKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN S A +++++ + + + Sbjct: 214 MDQTLTIPMVGHVQSLNASVATGVLLYQMLNSKM 247 >gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group] gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group] Length = 343 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 16/144 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + + +++ + R S A+ +D + ++S+ E A+ Sbjct: 158 GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 216 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + ATT + V + Q I+ G E G++++ + LS+ Sbjct: 217 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 264 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 S P+ + S N+S A +++ Sbjct: 265 HCSVPMKGMVDSFNVSVAAGILMH 288 >gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1] Length = 305 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 17/182 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P+ L A +++L + N+G + R+ R P + Sbjct: 136 LEPFLKALPAEAPALIVVLDHVEDPHNLGAIVRSAEAAGAAAAVYSRRRSALPGGTVVKT 195 Query: 61 SANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 SA A + V V L + A + R + P Sbjct: 196 SAGASLRLPMIPVVNVVRTLAQLQAAGFWTVGLEGRAGASLWEDGLP------------- 242 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + ++ G E GL+ + ++ P+ SLN S A ++E +S Sbjct: 243 -ARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVAAAFGMFEWSRTRASASA 301 Query: 178 KN 179 + Sbjct: 302 QG 303 >gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length = 133 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 21/135 (15%) Query: 42 QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNF 98 L LV P +EK + + V V +N+++ A+ F + T A Sbjct: 8 HLHLVEPLGFDLTEKHLRRAGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATG---- 63 Query: 99 KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLN 156 I ++FG E GL +E I A + P+ S+N Sbjct: 64 ------------WFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMN 111 Query: 157 ISQAVLLMVWECMEN 171 +S + + +E Sbjct: 112 LSNSAAVATYEAWRQ 126 >gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480] gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480] Length = 510 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 33/189 (17%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ F +P + P S ++A A L AI D Sbjct: 327 PGNLGAIFRSAHWFG-ADAIAFSPLNSAPISPVVMKAAAGA------TETVPTL--AIRD 377 Query: 84 LHFIYATTARNRNNFKSVLAPKEAA-------IVLNERIFS------GQNVGIIFGRERW 130 + + N F + AP+ I + + + S ++ G E Sbjct: 378 VTTFITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSLSTELTKAPCVLMLGGEGS 437 Query: 131 GLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 GL + ++A ++ P SLN+S A L+ E + S + Sbjct: 438 GLQQKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC-EAFLSRPPSGATEAQ 496 Query: 182 EQNTPATKG 190 + A Sbjct: 497 VSSDAAAGD 505 >gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)] Length = 314 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 22/167 (13%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVID 69 ++ L N+G V R++ F + + R + A +SA A + Sbjct: 163 IDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVA 222 Query: 70 SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 NL A+ + A + L + V I+ Sbjct: 223 RAT---NLTRALEQYQKAGITVVGLAA-------------DGEAELGDLAALDGPVVIVV 266 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + + P+ SLN A ++++E Sbjct: 267 GSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313 >gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment'] Length = 261 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 11/164 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +N+G + R L + R + +SA A + A+A Sbjct: 106 QDPQNLGAIIRTAEAAGANGLFIAKHRAAGITPAVAKASAGASEHL-----------AVA 154 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + A A ++ L +A+ I +G++ G E GLT + Sbjct: 155 RVAGLPAFLAWLKDQGIWTLGADPSAVQSLYEIDLRAPMGVVIGGEHRGLTMLVRQRCDL 214 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 + P SLN + A + ++E + V Q T Sbjct: 215 LARIPTRGRVDSLNAAAAAAVFLFEIRRQQSGMKQLPVNAQETA 258 >gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC 27560] Length = 247 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 31/177 (17%) Query: 7 QLQNSAKGPVIILVD-PQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANA 64 + + + P +IL+D + N+G + R N + + R + +SA A Sbjct: 90 KAREKGESPFVILLDDIEDPHNLGAIIRT-ANLAGAHGVIIPKHRASGLTATVAKTSAGA 148 Query: 65 DCVIDSVRVFS---NLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +V + ++E + + TT + + Sbjct: 149 LNYTPVAKVTNISKTIEELKKEGMWFVCADMGGTTMYDLDLK------------------ 190 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++G++ G E G++ + + S P+ SLN S A ++ +E + + Sbjct: 191 --GSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYEIVRQRM 245 >gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905] gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905] Length = 250 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + R + +S A + VRV Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLA 161 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ +++ + + + II G E G+ Sbjct: 162 QTVDELKERGVWIAGTDAKGSVDYRKM--------------DATLPLAIIIGSEGKGMGR 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + P+ SLN S A L+++E + E Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250 >gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221] gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221] gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 260.94] gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3] Length = 227 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + + E +S+ A + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG--EKLAMEGVIRTSSGAALDLPIA-ISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I + + + F SLN+S A ++ Sbjct: 192 IIKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a] Length = 303 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53 A +L +A+ +L + N G + R+ + L+ P P Sbjct: 139 RAEELCRNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196 Query: 54 -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 E ++ ++S+ F A+ D Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 ++ + S + + II G E +GL+ + I + + P+ SLN+ A Sbjct: 242 --------DDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293 Query: 163 LMVWECM 169 + E Sbjct: 294 VAFRELR 300 >gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 215 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 57/152 (37%), Gaps = 16/152 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--DL 84 N+ + R + ++ V + + + + + ++ +D+ + + +A+ Sbjct: 11 NLSAIVRNCDAVGIQRMHAVIGTEDYKTFRGTAMGSHHWVDVDTHQNPAVALDALKASGY 70 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + A ++AA ++ GI+ G ER G++ + + I Sbjct: 71 QLVAA------------HFDEQAADY--RQVDYTLPTGILMGAERRGVSAIALERVDRCI 116 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ + S N+S A +++ E + Sbjct: 117 TIPMVGMVESYNVSVAAGIILAEAQRQREAAG 148 >gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6] gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6] Length = 173 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 22/172 (12%) Query: 13 KGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVID 69 P +I L +P+ N+G V RA +N Q+R + S +A + Sbjct: 3 TEPTVIIGLHNPKSPTNVGAVMRAAGCYNAAQVRY--------NGTRYSRAARFQTDTQN 54 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S L+ + DL TA + + V + +FG E Sbjct: 55 SHERIDLLE--MEDL------TASLDGDVEIVCVELVVGATALPHFAHPEKAIYLFGPED 106 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 L E + ++ ++ P + +N++ V +++++ + ++ S + + + Sbjct: 107 GSLPQEVVDKAHHVVYIPTHGC---MNLAATVNVVMYDRLAKTLDSIDDHAQ 155 >gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27] Length = 258 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 24/169 (14%) Query: 10 NSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64 N K P +IL D N+G + R N + L +EK ++ + Sbjct: 101 NDLKSPSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSIL 160 Query: 65 ---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 ++ + + LKE NN+ + + + +I + Sbjct: 161 NVNLYYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKN 204 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 IIFG E G++++ I +++ P+ SLN++ A +++++ E Sbjct: 205 VIIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253 >gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 269 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 28/158 (17%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76 + NIG + R + + L +P + SS VF ++ Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LKE + +H V +A Q + ++FG E+ GL+ + Sbjct: 178 LKEVLDLVH----------QQEWQVFTTIPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDW 227 Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + N I+ P+ SLN+S +V + +E + Sbjct: 228 LNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263 >gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7] gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7] Length = 246 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 IL N+G R + + + P+D A + A Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGVTAVVSKVACGA------AETVP 152 Query: 76 NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A T R V EA L + G + I G E GL Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 278 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R R L P A+ L E +G+ V ++ G E GLT + ++ P+ P Sbjct: 199 RERGFQLISLTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGT 257 Query: 153 PSLNISQAVLLMVWE 167 SLN++ A + +E Sbjct: 258 DSLNVATAAAMAFYE 272 >gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM 45100] Length = 180 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 N + G ++ PQ+ N G R T L L P EK + + Sbjct: 2 NDSSGLHVLFDRPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRRAGLDYHDLA 60 Query: 70 SVRVFSNLKEA---IADL-HFIYATTARNRNNFKSVLAPKEAA-----IVLNERIFSGQN 120 V++ ++ +A + A++ + S + A + Sbjct: 61 DVKLHDSVWDAFDSLCGCLPRSAASSLTDATRPLSSAPSRVFAFTTKGEKWFTDVAYQPG 120 Query: 121 VGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159 ++FG E GL + + + P+ P S+N+S Sbjct: 121 DVLLFGPEPTGLDEDVLNDPRVTEWVRIPMLPGRRSMNLSN 161 >gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC 35896] Length = 242 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 18/166 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + G ++IL + + N+G + R+ + + L R + +SA A + Sbjct: 89 QNKTGFLLILDEIEDPHNLGALIRSAEGAGVDGVILPKRRSATVNATVEKTSAGAVSYMK 148 Query: 70 SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 RV + ++ + +++Y + + N+ I+ G Sbjct: 149 VARVTNISQTIELLKKENYWVYGL---------------DMDGTEYTQNDWSGNIAIVVG 193 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + I+S P+ SLN S A ++++E + Sbjct: 194 NEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239 >gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 226 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 62/150 (41%), Gaps = 24/150 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID------SVRVFSNLKEA 80 N + R++ + +V ++ + E + AD ++ ++ F N+K+ Sbjct: 48 NAAAIVRSVEACGFHK--VVALQEEYSFEPNLRVTKGADTWVEVEKLPRNMESFQNIKD- 104 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 R ++ ++ A +L E + + + ++FG E G++ E + + Sbjct: 105 --------------RRYKIVAVSLEKNAKMLPEYEVT-EPIALVFGTEMEGVSQEILDFA 149 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ P+ S N+S A + ++E + Sbjct: 150 DETLAIPMYGFTRSFNVSVAASICMYELKQ 179 >gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica subsp. indica ATCC 9039] Length = 293 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + G V++L N+G + R F++ + +++ ++ Sbjct: 143 PTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTERHAPALGGVLAKAASGG---LE 199 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V++ NL A+ T R + + A ++ + + ++ G Sbjct: 200 HVQIVPVVNLARALE-------TLGRLNYLRVGLDSA---AEADFTQLPLQRPIALVLGG 249 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E GL + + + SLN+S A +++ Sbjct: 250 EGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287 >gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 229 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + G E+WGL+ L +A I P+ + SLN+S A +++E + VS Sbjct: 114 GPTAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQREVSGTL 173 Query: 179 NVKEQNTP 186 + P Sbjct: 174 PQNGEGLP 181 >gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017] Length = 279 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +N + G ER GL+ ++ +L N ++ P+ SLN++ A L ++E + + ++ S Sbjct: 216 KNTLLFLGEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDS 273 >gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202] gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187] gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137] gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA1] gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA1] gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL110PA2] gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA1] gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA1] gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA1] gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA2] gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL086PA1] gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA4] gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA1] gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL050PA3] gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL067PA1] gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA1] gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA1] gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL082PA1] gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA2] gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL078PA1] gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL059PA2] gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA1] gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA1] gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL030PA2] gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL097PA1] gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL092PA1] gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA3] gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL083PA2] gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA1] gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL025PA2] Length = 269 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A + ++ + E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVAAMALSGDS----VTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN++ A + +E Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268 >gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus 214-1] gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus crispatus ST1] gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus 214-1] gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus crispatus ST1] gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] Length = 186 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L + T + + + +N +FG+E GL Sbjct: 60 RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191 + + + P++ N+S +V +++ E + + + K + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDD 171 Query: 192 LLS 194 Sbjct: 172 YDR 174 >gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum PRL2010] gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171] Length = 292 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 13/150 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN--------- 76 N+G + R+ ++ LV P G P +A S I R+ + Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L+E + A + + L + E + +IFG E GL+ Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNS--PESADHIDKLALIFGTEGDGLSRHT 253 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IA ++ + P++ SLN++ + + + Sbjct: 254 IAGADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho melanesiensis BI429] Length = 238 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRV 73 +IL Q N G + R L + + S +I+ + Sbjct: 90 VILDQIQDPHNFGAIIRTSVAAGADALVIPKNNSVKVTPTVVKVSVGTLFKTNIIEVTNI 149 Query: 74 FSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E I L ++Y + FK L + V I+ G E G+ Sbjct: 150 -ARFIEKIKTLGIWVYGAAMDGKEYFKVDL---------------KKPVAIVLGNEGNGI 193 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +IS P+ SLN+S + ++++E Sbjct: 194 RENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232 >gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium ALC-1] Length = 218 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 20/144 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N V R+ F + +L +V + ++ + A +D R S K I L Sbjct: 44 HNASAVMRSCDVFGIQELNIVEEVNSKSIDREIAM--GAQKWVDLNRFHST-KSCIDHLK 100 Query: 86 F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 I ATT P L + + + FGRE GL+ + I ++ Sbjct: 101 TKGYQIVATT------------PHAEDCDLIDFDIT-KKSCFFFGRETEGLSQQVIDEAD 147 Query: 142 AIISFPVNPLFPSLNISQAVLLMV 165 + P+ SLNIS + +++ Sbjct: 148 CFLKIPMVGFTESLNISVSAAIIL 171 >gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756] gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium 3_1_46FAA] Length = 261 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 17/160 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L + Q N+G + R T + L + K S+ A I + Sbjct: 111 VLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDD 170 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E + +YA + N++ + + G E GL Sbjct: 171 LKGTIDELKREGITVYAAHLKGENSY--------------DMEDYKTACAFLIGNEGNGL 216 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 T E A ++ I P+ SLN + A ++++E Sbjct: 217 TEETAACADRKILIPMEGGAESLNAAVASAVLMFEAGRQR 256 >gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 278 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R R L P A+ L E +G+ V ++ G E GLT + ++ P+ P Sbjct: 199 RERGFQLISLTPNPGAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGT 257 Query: 153 PSLNISQAVLLMVWE 167 SLN++ A + +E Sbjct: 258 DSLNVATAAAMAFYE 272 >gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636] Length = 254 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN+ A ++++ Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336] Length = 227 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81116] gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116] gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni M1] gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 227 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134] Length = 256 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 21/165 (12%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDS 70 +++L N+G R ++ P+D + ++ A + Sbjct: 105 TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNTTVAKVASGAAETVPY 162 Query: 71 VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + V + L+E ++ T K++ + I+ G Sbjct: 163 ITVTNLARTLRELQERGIWVVGTA---DGTDKTLYDVDLKGP-----------MAIVMGA 208 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + ++ P+ SLN+S A + ++E + Sbjct: 209 EGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLYEAVRQR 253 >gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 84-25] gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 227 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 239 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 61/154 (39%), Gaps = 15/154 (9%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ ++L + N+ + R+ F L+++ L +P+ ++S++ V Sbjct: 60 LRHRQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPTLGRKTSASARKWV 119 Query: 68 I-DSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + ++L + F + AT+ + + + +I Sbjct: 120 ESERHKNSADLMRTLRGQGFQVLATSCS--ETARPLRDWDFI-----------RPTAVIM 166 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E G+ E ++L++ + P+ + S N+S Sbjct: 167 GNEHSGVEEELLSLADGQLYIPMYGMIQSFNVSV 200 >gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501] Length = 254 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN+ A ++++ Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM 20016] gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3] gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 290 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 17/150 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80 NIG + R+ + + + + +A + + +V+ + E Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQS--EG 203 Query: 81 IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + LH TA R+N + P ++ + II G E GL I Sbjct: 204 VDLLHRAGYKTAAMALRHNTVDIDDP---------QLAEVDRLAIILGSEGPGLRENTIT 254 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 S+ I P+ SLN++ A L WE Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWEL 284 >gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria bacterium BBFL7] Length = 271 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 23/166 (13%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K P+I++ + P+ N+G + R + + + NP + SS + + Sbjct: 120 KNPLILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVGCVFTVPTA 179 Query: 72 -----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V LK +++ YA T ++ + ++ I G Sbjct: 180 TGTTSEVVDFLKS--KNINL-YAATLQSSERYDTMDY--------------TSGSAIALG 222 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GLT E + I P++ S+N+S + ++++E Sbjct: 223 TEATGLTQEMRDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQR 268 >gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3] gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3] Length = 246 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 IL N+G R + + + P+D A + A Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152 Query: 76 NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A T R V EA L + G + I G E GL Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 177 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + +K PV+ +L + + N+G R F + ++ L P + ++ Sbjct: 12 PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71 Query: 62 ANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFS 117 A +D +L A+ D + E +++L++ S Sbjct: 72 LGATSSVDW-EHAPDLISRLNALKD-----------EGYQILAIEQAEGSVMLHQFEPSS 119 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 Q +FG E G+ E + +S+ + P S NIS + +++W Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168 >gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L + K V+IL + Q N G + R+ F + L L+ R+ +E +S A Sbjct: 80 EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + + ++ P+ SLN+S A +++ Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228 >gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A] Length = 233 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 23/160 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRV 73 +++L D Q +N+G + R+ FN + N ++K +S A D I+ + + Sbjct: 93 ILVLDDVQNPDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGALFDLYIERLDI 152 Query: 74 FS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 LK+ + + ++ + KS L P + + ++ G E G Sbjct: 153 HEFITLKK--QNGYQVFGA-----DAHKSELEPDKTKPFI-----------LVLGNEGQG 194 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 L ++ I L + ++ + SLN++ A ++++E + Sbjct: 195 LRSKTIELLDGRLNIETH-HVESLNVTVAGSILMYEWSKQ 233 >gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486] Length = 227 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLTMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I + + + F SLN+S A ++ Sbjct: 192 IIKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata F0304] Length = 326 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 10/150 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +N+G V R+ F + + L R + A SA A + RV N Sbjct: 177 IALDGVTDPQNLGAVIRSAAAFGASGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 235 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L +AI + + R + L A + F + ++ G E G++ Sbjct: 236 LTKAID--------SLKERGFYSIGLDGGGTA-QVGYSGFETDPLIVVLGSEGKGISRLV 286 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +AI+S P+ L SLN S A + ++ Sbjct: 287 REQCDAIVSIPMTSLVESLNASVAAGIALF 316 >gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1] Length = 214 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 18/173 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P A +L K ++ +V+P N+G + R+ + + L + ++ Sbjct: 52 PSAEELCRGKKRIAVLENVVNPT---NMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRV 108 Query: 61 SANADCVIDSV---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S + + + L + A A ++N + +R+ S Sbjct: 109 SMGTVFQVPWTIMKCRNEEYPDILHGLGYKMAAMA-LKDNSVDIDD---------DRLNS 158 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + +I G E GL + I + + P+ SLN++ A + W+ + Sbjct: 159 EEKLAVIMGTEGEGLADHTIDACDYTVKIPMYNGVDSLNVAAASAVAFWQLGK 211 >gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4] gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4] Length = 260 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ + + L S KA A V+ V L Sbjct: 122 QDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDLL----- 176 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A T N LA L E+ Q V + G E GL+ + A ++ Sbjct: 177 ------ALTG---NFPGETLATVMQGESLYEQDLR-QPVAFLIGNEGAGLSLKLQAAASR 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ SLN + A + V+E + ++ Sbjct: 227 KIHIPMQGQVESLNAAAATSICVFERLRQNLNQG 260 >gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124] gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC 13124] Length = 257 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----NSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++E +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii] gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii] Length = 316 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 11/156 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R + VN DG + ++ ++A AD +D V+ + + E +A Sbjct: 103 GNLAAVCRTADALGYGAVHAVNKADGKF-KMSQRTAAGADKWLD-VKAWDSTGECLA--- 157 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A A + L + + + + + ++ G E++G++ E +A ++A Sbjct: 158 ---AMKAAGYQIVTTHLT---QSSITIQEVDWTRPTAVVLGNEKFGVSAEAVAAADACAI 211 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 P+ + S NIS A L+++E + I + Sbjct: 212 IPMTGMVESFNISVANALILYEAQQQRIRRLGSHAD 247 >gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102] Length = 278 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 26/178 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEKARSSSANADCVIDSVRVF 74 +L Q N+G + R ++ + L V+P K+ +SA A + R Sbjct: 113 VLDRIQDPGNLGTLLRTALAADVQNVWLGSGVDP----LGSKSLRASAGALLQLPHHRFG 168 Query: 75 SNLKEAIADLH-----------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + AI+ L + AT P + + Sbjct: 169 PDEDTAISQLTDELKRLAAGGMQVVAT------LVPGSQVPIRPVPYW--ELNWRLPTAL 220 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + G E GL E +A ++ P + SLN++ A + ++ E ++ ++ + Sbjct: 221 VLGTEGAGLHPELLACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRATMTATTQQSG 278 >gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus fusiformis ZC1] Length = 250 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + R + +S A + VRV Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLA 161 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ +++ + + + II G E G+ Sbjct: 162 QTIDELKERGIWIAGTDAKGSADYRKM--------------DATLPLAIIIGSEGKGMGR 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + P+ SLN S A L+++E + E Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250 >gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 255 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 15/144 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82 NIG + R + L + K + + + I + +++ Sbjct: 122 PGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLLKTIEQFKE 181 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +YA+ VL + + E+ + + +I G E G++ + + L++ Sbjct: 182 NYIPVYAS----------VLDDEAKELPDFEKT---KELALIIGNEANGVSGDAVNLADE 228 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN + A +M++ Sbjct: 229 KLFIPIKGQAESLNAAIAAGIMIY 252 >gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 249 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLGA 249 >gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae] Length = 147 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 44/164 (26%) Query: 25 GENIGMVARAMWNFNLT---------------QLRLVNPRDGWPSEKARSSSANADCVID 69 N G + R N + +LR R G + + +AD Sbjct: 1 PPNTGNIIRLCANTGFSLAYHLSRWASPWDDKRLR----RAGLDYHEFTAVQRHADY--- 53 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ A ++A T + P +A + ++FG E Sbjct: 54 -AAFVAS-----AQPQRLFALTTKG--------TPAHSA------VSYQDGDFLMFGPET 93 Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL + I P+ P S+N+S AV ++V+E Sbjct: 94 RGLPASILDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 137 >gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 165 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 NIG + R F + + + PR + ++ + ++ + + L+E Sbjct: 29 NIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSRSTHLHVPHQIIEETTELTAYLQE- 87 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + I N K VL PK+ + ++ G E G++ E + +S Sbjct: 88 -NNFEIIALEITSNSKPLKEVLIPKD------------KKTALLIGSEIAGISEELLKIS 134 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 + I+ + S+N+ QA + ++E Sbjct: 135 HQIVHINMFGKNSSMNVVQAASIALYEI 162 >gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 289 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 23/150 (15%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS------NLKE 79 EN+G + R + + + +A S ++ R LKE Sbjct: 135 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKE 194 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEI 137 + + P+ +A L E G V ++ G E GLT + Sbjct: 195 --NGFRLLA-------------MTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAAL 239 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 LS+ + P++ SLN++ A L +E Sbjct: 240 RLSDVRVRIPMSRGTDSLNVATAAALAFYE 269 >gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4] gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4] Length = 246 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75 IL N+G R + + + P+D A + A Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152 Query: 76 NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A T R V EA L + G + I G E GL Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A + ++E + Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244 >gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM 21211] Length = 217 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 83/226 (36%), Gaps = 33/226 (14%) Query: 1 MTPY-----APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP L +++ + N + R+ + + V P++G Sbjct: 1 MTPERFEKLKRVLSQRQPTLTVLMEEVNKPHNFSAILRSCDAVGVWEAHAVPPKNGKLP- 59 Query: 56 KARSSSANADCVIDSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAI 109 ++++ + V+ ++ A+ +L + AT +AR+ + Sbjct: 60 -TYNATSGSAEKWVRVQSHADAPSAVRELQGRGFQVLATHLSARSVDYR----------- 107 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + ++ G E+WG++ E ++A + P+ + SLN+S A +++E Sbjct: 108 ----ELDYTRPTCVLLGAEKWGVSEEAADAADANVVIPMLGMVQSLNVSVACATILFEAQ 163 Query: 170 ENSIVSSEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212 + + + P + + + F L + ERG P Sbjct: 164 RQRLAAGLY--GQAPFPPDEFDRVLFEWAYPDLADTYRERGEPYPA 207 >gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1] Length = 307 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83 N+G R+ N LV P P +A S ++ + + AD Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + ++ A L S + V ++ G ER GL +A ++ + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170 + + SLN++ A + W + Sbjct: 281 VRIEMAHGVDSLNVAGACAVACWAIAQ 307 >gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM 16511] gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM 16511] Length = 260 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 13/156 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L EN+G +AR+ + +V P + + V + Sbjct: 113 VVMLTRLNNLENVGAIARSAAALGVGG-YVVPSSGPHPYGRRAIRVSTGHVTRLKVHCYE 171 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + T R R ++LA + A+ L + +I G E G+ Sbjct: 172 DILQ----------TMERLRELGYTLLAAEATPEAVPLARFGPVPKRWALILGNEEEGVP 221 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E + +A++ + P S N++ A ++++ Sbjct: 222 EEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257 >gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317] Length = 254 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN+ A ++++ Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 15/151 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R+ F + +V R W A + V + + + + Sbjct: 81 QHDMNIGSIVRSANAFAADTVHIVG-RRRWNKRGAMVT-----DRYQHVVHHATIDDLVE 134 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR + + VL E + ++FG+E GL++E +A ++ Sbjct: 135 --------WARGEGLPIIAIDNVD-GSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 185 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ S+N S A +++ + + Sbjct: 186 TVAISQFGSTRSINASAAAAVVMHAWVMQHV 216 >gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum] Length = 127 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 15/132 (11%) Query: 52 WPSEKARSSSANADCVIDSVRVFSNLKEAI--------ADLHFIYATTARNRNNFKSVLA 103 + A ++ +D + +N ++AI I T++ N S+ + Sbjct: 2 PLTPAAYRTAQGGAESVDIAAI-NNEEQAISVIKKLKQKGCK-IITTSSHFTENTTSIYS 59 Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 PK +E V ++ G ER G++ A ++A I P SLN+ QA + Sbjct: 60 PK-----ASEVFLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAV 114 Query: 164 MVWECMENSIVS 175 + E S Sbjct: 115 IFGELWRARGGS 126 >gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris PB013-T2-3] Length = 248 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +S A + RV Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 KE +++ T + R+ V ++ G E G++ Sbjct: 163 QTAKELKDRGVWLFGTDMKGRD----YRTWDAHGA-----------VALVIGNEGKGISP 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 LLKKSCDEMLTIPMIGHVQSLNASVAASLLIYQ 240 >gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039] Length = 254 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN+ A ++++ Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2143] Length = 255 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 21/155 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSAN---ADCVIDSV 71 I L + +N+GM+ R++ N+ L + PR S +S ++ Sbjct: 115 IALDNITNPQNVGMIIRSVCAGNIDGLII--PRKGCAALSPLVIKASVGTVFKAPLLH-- 170 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L + + R+R+ + A + Q+V I G E G Sbjct: 171 --CETLAQGLG--------ALRDRDVT--ICTLSSHAKQSLFEYQAQQSVVYILGNETEG 218 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E LS+ +S P+N SLN++ L+ + Sbjct: 219 VSEEVQKLSDQQLSIPMNNGVESLNVAVTAALIAF 253 >gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + L+ S + ++ + + R + Sbjct: 120 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLAR--AT 177 Query: 77 LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +E IA + + AT +++++ K + V ++ G E+ G Sbjct: 178 PEEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 223 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L + ++A+ P SLN++ A +M++E + + +E Sbjct: 224 LPEQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 269 >gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001] Length = 285 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 5/147 (3%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + L L D + R+S+ A + L + Sbjct: 125 QDPGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALALPLQRGSRETL---LH 181 Query: 83 DLHFIYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L + A TA + V+A P +A + ++ + ++ G+E GL+ + + + Sbjct: 182 QLGELAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGAGLSGQLLQRA 241 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167 ++ P + SLN++ A ++ E Sbjct: 242 THRVTIPHSAAVESLNVAVAAAPLLLE 268 >gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9211] Length = 285 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 25/197 (12%) Query: 3 PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P+L++S P ILV Q N+G + R ++ L L S+K S Sbjct: 101 SALPKLKHS---PDFILVLDRLQDPGNVGTLFRTALAADIDALWL-ALGADPLSQKVLRS 156 Query: 61 SANADCVIDSVRVFSNLKEAIADLH-----------FIYATTARNRNNFKSVLAPKEAAI 109 SA A + R+ + AI L + AT + + V+ E Sbjct: 157 SAGAVLKLPFERLADSEDIAIDGLVDKLRGVSQEGYQVVATYVAGKPSDFEVIPYWE--- 213 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + ++ G E GL+ A ++ P + SLN++ A ++ E Sbjct: 214 -----LDWIKPTVLVLGNEGSGLSPRIQACCTHGVTLPHSEAVESLNVAVAAAPLLLERR 268 Query: 170 ENSIVSSEKNVKEQNTP 186 + S E++ Sbjct: 269 RAKMTSYMSKNGERSKL 285 >gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 171 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71 I+ + ENIGM R +F + ++ + PS + R A I+ + Sbjct: 17 PITIVCDAIRTPENIGMCFRISESFGVEKIYF---HENSPSIENRKVINTARNTINQIEY 73 Query: 72 RVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +S + I +L + I +++ K+ + + ++ G Sbjct: 74 QTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKY-----------EKIVLLLGS 122 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ER G+ N I L + I+ P+ S+N+ ++ + ++E Sbjct: 123 ERNGIEN--INLVDETIAIPMYGRNSSMNVIHSLAITLYEI 161 >gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA1] Length = 269 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A + ++ + E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVAAMALSGDS----VTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN++ A + +E Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268 >gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510] Length = 271 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 16/177 (9%) Query: 3 PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS 59 P A L ++ V++L +N+G + R F +++P KA Sbjct: 108 PSAADLLDACGPVARVVMLFGIGNHDNMGGIFRNAAAFG-ADAVILDPGCCDPLYRKAIR 166 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 S A ++ + R+ ++ +A L L+P A + + Sbjct: 167 VSVGATLLVPTARL-DAGEDPLALLDRF--------RFEAVALSP--AGAETLAALTPPR 215 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++FG E GL +A + + P+ F SLN++ +++ + Sbjct: 216 RAALLFGSEGPGLPPALLARA-RSVRIPMAGGFDSLNVATTSGIVLHHVAAGQATPA 271 >gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328] gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328] Length = 234 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 14/161 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + N + IIL N+G + R+M F L L++ + K +S A Sbjct: 84 EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVRASMGAFF 143 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +++ F NL++ + +N E + L + F + + FG Sbjct: 144 KL-NIQKFDNLEDYKKNF----------PDNKIYSFLLDENSNELGDVKFD-EPFSLAFG 191 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GL E + I + SLN+ A + ++E Sbjct: 192 NEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230 >gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R FNL+ + + + K ++ + I V ++ + Sbjct: 92 SDAGNMGTIIRTADAFNLSGVIISEDSCDIYNPKTIRATMAS---IFRVPIY-----FLK 143 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I +NNFK +++ E + + E SG + ++ G E G++ + + +N Sbjct: 144 EDELI-------KNNFKIIVSALEDSKPIKECDLSGDLI-LVIGNEAHGVSQKILERANL 195 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 + P+ SLN A + +E + Sbjct: 196 KVKIPIRDSVDSLNAGVAAGIFAYEMRK 223 >gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas endodontalis ATCC 35406] Length = 246 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 18/170 (10%) Query: 6 PQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 PQ+ + P+I+L++ N G +AR+ L + S A ++SA A Sbjct: 87 PQIFERGEDPLIVLLNGVTDTRNFGAIARSAECAGAHALVIAERGSVSVSADAVNASAGA 146 Query: 65 DCVIDSVRVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 I RV ++ A +A+ ++ E A + Sbjct: 147 LMRIPVCRV-PSISGAVGYLAECGL-------------QIVVANEKAENTYYTADLTGPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E G++ + L+ ++ P SLN+S A ++++E + Sbjct: 193 ALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESLRQ 242 >gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1] gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 178 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 20/178 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L + I L +P+ EN+G V RA + ++ + + K + Sbjct: 17 PEGTPLVADKRYSCIGLYNPKSPENVGSVMRAAGCYGVS--------TVFYTGKRYERA- 67 Query: 63 NADCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 AD V D+ RV ++ I DL I N + + A L E + + Sbjct: 68 -ADFVTDTKRVHYDIPLIGIDDLKKIL-----PLNCVPVAVELVDGARPLPEYTHPDRAL 121 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 IFG E L E ++ P +N++ V +++++ M + + Sbjct: 122 -YIFGPEDGSLDQEIRDWCEDVVYIPTTGC---MNLAATVNVVLYDRMAKGLNTRSGP 175 >gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae DSM 12333] Length = 324 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 10/164 (6%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ VI L N+G V R+ F LV R A ++ Sbjct: 170 RSGTPALVIALDSITDPRNLGAVLRSAGAFGAHG-VLVPARRSAGVTAAAWKTSAGAAAR 228 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V +NL A+ + + ++ + + V ++ G E Sbjct: 229 VPVARATNLVRALQEYQAAGCFVVGLDGDGPGMV---------GDLPVADGPVVLVVGSE 279 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + + P+ SLN S A + ++E Sbjct: 280 GKGLSRLVRETCDVVAAIPIASSVESLNASVAASIALYEVARRR 323 >gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus] Length = 569 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + G V ++ G E G+ + L + ++ PV L SLN++ A ++++E + Sbjct: 500 ELEEGGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWS 559 Query: 174 VSS 176 V+ Sbjct: 560 VAG 562 >gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1] gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1] Length = 265 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS-SSANADCVIDSVR 72 PV++L N+G + R+ F +V R P + S++ A + VR Sbjct: 117 PVVVLDQVTDPHNVGAILRSAAAFGAA--CIVTQDRHAPPEGGVLAKSASGALETVPWVR 174 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V NL A+ +L + + EA L+ + +G + ++ G E G+ Sbjct: 175 VV-NLARALDEL---------ADLGYWRIGLAGEAEATLSGSLTTGA-LALVLGAEGEGM 223 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQ 159 + + + P+ SLN+S Sbjct: 224 RHNIAQHCDTLAKLPITSAIESLNVSN 250 >gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus SK58] Length = 329 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDS 70 +I L N+G + RA F+ +V P R + A +SA A + Sbjct: 176 PPLLIALDGITDPRNLGAIIRAGSAFD-ADGVIV-PERRSVGVTATAWRTSAGAAARVPV 233 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + NL + DLH F+ + L + + + ++ G Sbjct: 234 AQ-AGNLNTTLVDLHKAGYFVLGLDGGGD-------------VSLPGLALATEPLVLVVG 279 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ I+S P++ SLN S AV + ++E Sbjct: 280 AEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325 >gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 15/163 (9%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 V++L + N+G + R+ + + R + +SA A Sbjct: 94 RPPLVVVLDGVEDPHNLGAIIRSAHALGAHGVVIPKDRAVGVTPAVAKASAGAVERCPVA 153 Query: 72 RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV S EA+ + SV + L +G + ++ G E Sbjct: 154 RVTNVSKTLEALKE------------AGIWSVALAADGDAPLGAVDLTG-PIALVLGSEG 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL + P++ SL++S + + ++E Sbjct: 201 EGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAARQR 243 >gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 255 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 23/166 (13%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANA---DCVI 68 G I+L + Q N+G + R+ F + V+ S+K ++ + +I Sbjct: 103 SGLFILLENIQDPGNLGTIIRSADAFG-AKAVFVSKGSADIYSDKTIRATMGSIFHLPII 161 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 DS+ + + L ++A + + + P + G E Sbjct: 162 DSINIKNTLNLMKNKKISVFAASLKGEKYLNDIKFP--------------NKSAFVIGNE 207 Query: 129 RWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENS 172 GL +E ++ ++ P N SLN + A ++++E +N Sbjct: 208 ANGLRSETENSADTLVKIYMPGNTE--SLNAATAASIIMYEAAKNR 251 >gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma proteobacterium EB000-45B06] gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine bacterium 562] Length = 240 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A+ P+I IL + N+G R+ + + + + A S V Sbjct: 85 SDEAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEV 144 Query: 68 IDSVRVFSNLKEAIA---DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + +NL + ++ IY + E A + + I Sbjct: 145 I-KIFHVTNLVNCLKYLQGININIYGLS--------------EHASKSHTDYNFTEASAI 189 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E G+ + + + I+ N LF S N+S A +++ E Sbjct: 190 IMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238 >gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae] Length = 331 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+G + R+ +F + + L + S A ++A I ++ F+ Sbjct: 193 PHNLGAIMRSCAHFGVQGIILHD-TAAMESGSAVRTAAGGAEYIKGIQSDNFATTLNKFR 251 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +I TT+ +++N + + + + ++ +E GLT + Sbjct: 252 HAGYIIVTTSNHKDN------------IDIAKAVLPEKIVLLLEQESDGLTASLCQKGDM 299 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +++ + + Sbjct: 300 SLSIGGTGQVKSLNVSVAAGIILAKWWQQ 328 >gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150] gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968] gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150] Length = 250 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L S+K P +IL+ N+G R + + + + + + A Sbjct: 88 ALLESSKHPALILILDGITDPHNLGACLRTADATGVDFVMIPKDKSASITPVVSKVACGA 147 Query: 65 DCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + VRV ++K ++Y A + + Sbjct: 148 AESVPLVRVTNLVRSIKLLKEHGVWVYGAAG--------------EATGTLYQTDCTSAI 193 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E GL +++ S P+ SLN+S A + ++E + S Sbjct: 194 AIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQRKGSG 248 >gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11] Length = 234 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L AK V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y A + Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEEDYANK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM 14600] Length = 278 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L K ++IL + Q N+G + R T + + S K S+ + Sbjct: 120 EELLGGHKTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSL 179 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + + +L + R R + + A A ++ G + Sbjct: 180 YRVPWL-ITEDLSSYLK----------RARESGVCLYAADLQAKCDYDQADCRTACGFLI 228 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + AL+ A I P+ SLN + A ++++E Sbjct: 229 GNEGSGLRDATAALAEARIRIPMGGRLESLNAAMAAGILMYEAARQR 275 >gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec] Length = 332 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 102 LAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 L P A L G V ++ G E GLT E +A + + P+ SLN++ Sbjct: 261 LTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAAT 320 Query: 161 VLLMVW 166 + + Sbjct: 321 AAIACY 326 >gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans ATCC 51888] Length = 158 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 10/162 (6%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSN 76 L P + +N G + R + + ++ P S++A S A +D V + + Sbjct: 5 LYQPDIAQNTGTILRLCACLGVP-VDVIGPTGFDMSDRALKRS--ALDYLDHVDLKRHIS 61 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E + A + R + + +L A F ++ ++ GRE G Sbjct: 62 FSEFMDR----RALSERRADGGRLILLSAHAETPHIHFAFEPNDI-LMLGRESAGCPESV 116 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 A ++A I+ P+ P SLN++ +++ E + + Sbjct: 117 HAQADARITIPMRPGLRSLNVAVTAAIVLGEALRQTNQFPSP 158 >gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila RKU-1] gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2] gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga naphthophila RKU-10] Length = 242 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 41/186 (22%) Query: 2 TPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 ++ + P+I+L+D Q N+G + R Sbjct: 77 YSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRT-----------------------SVG 113 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNR-----NNFKSVLAPKEAAIVLNERI 115 + +I + ++K + T R R N +++ KE + Sbjct: 114 AGANGIIIPKDK---SVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASD 170 Query: 116 FSGQNV---------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G + +FG E G+ + +++ P+ SLN+S +V ++++ Sbjct: 171 IDGTPIYEEDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230 Query: 167 ECMENS 172 E + Sbjct: 231 EAVRQR 236 >gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8] gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans A8] Length = 262 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 15/178 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP L ++ ++ Q N+G + R + ++ L S K S Sbjct: 98 VTPPVLDLPDAVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRS 157 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + L + R V + A L E + Q Sbjct: 158 GQGAHFALAIHEHVD-LAALL------------PRLQIPLVATALDGARDLYEGVLP-QR 203 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSE 177 +FG E G+ E +A + + P + SLN+ A + ++E ++ + Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKVRIPHDMAAVESLNVGAAAAICLFEQRRQALRGTP 261 >gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440] gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica CNB-440] Length = 373 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 21/180 (11%) Query: 3 PYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 P+ + + P + L N+G V R+ F + + R + A Sbjct: 207 PFEDLTAAALEQPAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWR 266 Query: 60 SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115 +SA A + +V +NL A+ + A + + Sbjct: 267 TSAGAAARVPVAQV-TNLTRALKACKDAGFVVVGLDADGETDLYHL-------------E 312 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ G E GL+ + + P+ SLN S A + + E Sbjct: 313 AAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVAAAVTLAEVARRRAAG 372 >gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis str. 168] Length = 114 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 118 GQNVGIIFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ +FGRE GL + I + + P+ SLN+S ++V+E + Sbjct: 53 DEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 108 >gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25] gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp. Ex25] Length = 248 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--KGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + + + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAQ 247 >gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 185 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L + T + + + ++ +FG+E GL Sbjct: 60 MHDDLDTFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 + + + P++ N+S +V +++ E + + + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 162 >gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 229 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 12/150 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+ + R + Q V + P+ S++ + + V+ N++ AI Sbjct: 30 EKPHNLSAILRTCDAIGILQAHAVFKQSKIPTFN--STAQGSQKWVKLVK-HPNIEVAIK 86 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L FK + G E+WGL+ +L + Sbjct: 87 SL---------KGEGFKIYGTNLNEQAKDYRLFDYKGPTAFVLGAEKWGLSQLATSLVDE 137 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ + SLN+S A +++E + Sbjct: 138 SIFIPMRGMVQSLNVSVASATLLFEALRQR 167 >gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 81-176] Length = 227 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KINNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221 >gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026] Length = 185 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 18/161 (11%) Query: 17 IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 ++L +P + N G +AR N L L+ P K + D V R Sbjct: 5 VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L+ + T + + + ++ +FG+E GL Sbjct: 60 MHDDLETFLN--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P++ N+S +V +++ E + Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQ 152 >gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688] gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688] Length = 260 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ + + L S KA A V+ V L A+A Sbjct: 122 QDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDLL--ALA 179 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 N LA L + Q V + G E GL+ + A ++ Sbjct: 180 G------------NFPGETLATVMQGESLYAQNLR-QPVAFLIGNEGAGLSLKLQAAASR 226 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I P+ SLN + A + V+E + ++ Sbjct: 227 KIHIPMQGQVESLNAAAATSICVFERLRQNLNQG 260 >gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseoflavus Tu4000] Length = 314 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G V R++ F +V P +A +A A Sbjct: 165 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGAAA 217 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + A + A A + V + L V I+ G E GL+ Sbjct: 218 RTPVARA---TNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGLS 274 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN A ++++E Sbjct: 275 RLVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRR 313 >gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris BisB5] Length = 273 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 15/158 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68 G V++L N+G + R+ F + +V P + ++ A ++ Sbjct: 119 PQDGIVLVLDQITDPHNVGAILRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELV 176 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + NL A+A+L+ +R L + +A + + + + ++ G E Sbjct: 177 P-LVLVGNLSRALAELN--------DRGFLTVGLDSEGSADLAAVELH--EPLALVLGAE 225 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL N + + SLN+S A L ++ Sbjct: 226 GKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263 >gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens F0305] Length = 231 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P +LQ ++ P + P++ N G R + L LV P + Sbjct: 64 LQPQEARLQQTST-PHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 121 Query: 61 SANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSV-LAPKEAAIVLNERIFS 117 + + V + + I + I + TA+ + V P + + E Sbjct: 122 AGLDYHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDI 181 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G + + FP+ P SLN++ + ++E Sbjct: 182 PDPMDIMAGPHIY-----------QQVRFPMRPSLRSLNLANCASIALYEAWRQ 224 >gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7] Length = 274 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + + I+ G E GL IA + + P+ SLN++ A + WE Sbjct: 217 QLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDSLNVAAASAVAFWEMRRR 274 >gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5] gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5] Length = 371 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 16/168 (9%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A ++ L N+G V R+ F + + R + A +SA A + Sbjct: 217 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVA 276 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + +LK A + F+ V + L + + + ++ G E Sbjct: 277 QVTNLTRSLK-ACKEAGFVV------------VGLDADGQTDLYDLEAAVGPLVVVVGSE 323 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + +S P+ SLN S A + + E V + Sbjct: 324 GRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRRSVEA 371 >gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] Length = 304 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G V R + L++PR P ++ S A I R F + + + Sbjct: 162 NLGAVFRCAAALGMDG-VLLSPRCADPLYRRSVRVSMGAVFAIPYAR-FDTWPDELTGVS 219 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 L P AA + R+ +G+ + ++ G E GL+ + + + + Sbjct: 220 AA--------QFRLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRV 271 Query: 145 SFPVNPLFPSLNISQ 159 P++ SLN++ Sbjct: 272 RIPMHAGVDSLNVAA 286 >gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans CB1190] gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 22/162 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSAN---ADCVIDS 70 V++L N+GM+ R+ L + L PR G P +SA + V+ S Sbjct: 111 VLVLDAVTNPANVGMILRSATAAGLDGVLL--PRRGVPAIDPLVIKASAGVAFSAPVLRS 168 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 A A R +V L E + V ++ G E Sbjct: 169 AT-------AAQGC-------AVLRAAGFAVHGLAAGGDSLLEAELP-ERVALVLGNESE 213 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + ++ P+ SLN++ A + +E + Sbjct: 214 GLSADVREELDGTLAIPMFGGVESLNVASAGAVAAYELLRRR 255 >gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM 16922] Length = 249 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 36/181 (19%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62 PQ+ K P ++IL N G +AR + + + P G + A +SA Sbjct: 87 PQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGIDAIII--PYKGSASVNADAVKTSA 144 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118 A + ++ + N K+V +++ IVL Sbjct: 145 GA---LYNIPICK------------------ENNLKKTVDYLQQSGIVLAAASEKSDTYL 183 Query: 119 ------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + II G E G+++ + +S+ II P+ SLN+S A +++E + Sbjct: 184 YDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243 Query: 173 I 173 + Sbjct: 244 L 244 >gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16] Length = 307 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83 N+G R+ N LV P P +A S ++ + + AD Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + ++ A L S + V ++ G ER GL +A ++ + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280 Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166 + + SLN++ A + W Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303 >gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L + K V+IL + Q N G + R+ F + L L+ R+ +E +S A Sbjct: 80 EELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 307 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83 N+G R+ N LV P P +A S ++ + + AD Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + ++ A L S + V ++ G ER GL +A ++ + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280 Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166 + + SLN++ A + W Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303 >gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1] gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis MR-1] Length = 203 Score = 52.0 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 42/204 (20%) Query: 1 MTPYAPQLQNSAKGP------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54 M+ L ++ P I LV+P+ N+G + RA + + + + Sbjct: 2 MSSSTTTLVDAVASPQAQQAVYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYT 53 Query: 55 EKARSSSANA-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLA 103 K +A + ++L +AI A + + Sbjct: 54 GKRYEYAARGPQQYNADTQSAAERIPLTGVTSLLDAIPAGTQLVC-------------VD 100 Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 A L E + + +FG E + E I ++A++ P +N++ +V + Sbjct: 101 LVLGATPLPEFVHP-ERAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNV 156 Query: 164 MVWECMENSIVSSEKNVKEQNTPA 187 ++++ + + N E + A Sbjct: 157 LLYDRLAKTYRKQATNEAEFDGDA 180 >gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora aurantiaca ATCC 27029] Length = 371 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 16/168 (9%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A ++ L N+G V R+ F + + R + A +SA A + Sbjct: 217 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVA 276 Query: 72 RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 +V + +LK A + F+ V + L + + + ++ G E Sbjct: 277 QVTNLTRSLK-ACKEAGFVV------------VGLDADGQTDLYDLEAAVGPLVVVVGSE 323 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GL+ + +S P+ SLN S A + + E V + Sbjct: 324 GRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRRSVEA 371 >gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 288 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A P I +L N+G + R+ + + + + ++ + + Sbjct: 129 PAAHPRIAVLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVP 188 Query: 70 S----VRVFSNLKEAIADLHFI----YATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + A + + Y T A R+N + P ++ Sbjct: 189 WTYIDAHTWQT-----AGVRLLHRLGYQTAAMALRHNTVRIDDP---------QLAQVDK 234 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + II G E GL + IA S+ I P+ SLN++ A L WE Sbjct: 235 LAIILGSEGPGLAEQTIAQSDFTIKIPMAAGVDSLNVAAASALAFWEL 282 >gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03] Length = 253 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + N+G + R + L + K + S + I ++ N Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHI---QIVQN 168 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A ++ N ++ + S + ++ G E G + + Sbjct: 169 --------PILAAISSFKENGIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDV 220 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++ I P+ SLN + A +M++ Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium vanbaalenii PYR-1] Length = 314 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 11/168 (6%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A ++ ++ L + N+G + R++ F + + R + A +SA A Sbjct: 155 AEAKSDAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 214 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 R +NL A+ + V+ ++I + ++ Sbjct: 215 AARTPVAR-ATNLTRALKQWA----------DAGLQVVGLDADGDTTVDQIDGAGPIVVV 263 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ +A++S P+ SLN S A +++ E Sbjct: 264 VGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQR 311 >gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans DSM 574] Length = 264 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 24/169 (14%) Query: 11 SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + P++++V Q N+G + R+ + + L+ + K ++ + + Sbjct: 112 PGQPPLVVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLP 171 Query: 70 SVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V+ ++ A+A + I P + + V I+ Sbjct: 172 VVK-AEDVDGALAYLASAGVTLIVG-------------DPVLGEPIFKANLKV--PVAIM 215 Query: 125 FGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G ++ + ++ P+ SLN++ A +M++E + Sbjct: 216 VGNEGAG-PRADLDRFKHVKVNIPMPGRAESLNVAMATSIMLYEAVRQR 263 >gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae NCTC 13129] gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae] Length = 313 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 11/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G V++L + N+G V R++ F + + R + A +SA + + Sbjct: 163 GMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK- 221 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +N+ A+ + N V+ + V I+ G E G++ Sbjct: 222 ATNITRAVQEFQ----------QNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGIS 271 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++++S P+ SLN S A +++ E Sbjct: 272 RLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQR 310 >gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL B-30929] gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri NRRL B-30929] Length = 266 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 +IL + + N+G + R ++ + + R + +SA A + RV Sbjct: 118 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNL 177 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +KE +++ T + + + ++ +I G E G++ Sbjct: 178 SATIKELKQRGMWVFGTDVSGTDYRRW---------------DAKGSIAVIIGNEGKGIS 222 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A +++++ Sbjct: 223 PLLKKQVDEMLTIPMVGDIQSLNASVAASILIYQ 256 >gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema phagedenis F0421] Length = 254 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 27/149 (18%) Query: 27 NIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79 N+G + R+ F + + + + P+ + A + ++ V ++ L Sbjct: 113 NLGAIIRSAAFFGIPAVIITDEDPQAKITT-SAYRVAQGG---MEFVTIYHTRSIQWLLR 168 Query: 80 AIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 A + RN N+ ++L+P E II G E GL+ Sbjct: 169 ACEGKITRIGADHRSFRNLNSLPTLLSPDE-------------ATMIILGNEETGLSEAS 215 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ P + SLN++QA L + Sbjct: 216 KKACDHLVKIPGSGAIESLNVAQAGTLFL 244 >gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 307 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83 N+G R+ N LV P P +A S ++ + + AD Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + ++ A L S + V ++ G ER GL +A ++ + Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280 Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166 + + SLN++ A + W Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303 >gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299] gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299] Length = 338 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R + L+ ++KA ++ + R+ + L+E Sbjct: 200 QDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGVFRMPMARLTWEELEEV- 258 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 R + P A + + + ++ G E GL++ + Sbjct: 259 ----------TRRDGLQRFCAEPTADATAADTAATGSKGLCLVLGSEGQGLSDVALRTC- 307 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN++ A ++++ S Sbjct: 308 EPVAIPMPGEMESLNVAVAGGILLYLMRRGS 338 >gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp. BAL3] Length = 294 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L A+G +++L +N+G + R+ F + + + + ++ A Sbjct: 137 EELAEPAQGVIVMLDQLTDPQNVGAIFRSALAFGARGIVVQDRHAPALAGALAKAAVGAT 196 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + RV +NL A+ R + + E Q ++ Sbjct: 197 ERLPHARV-TNLSRALE----------RLADLGWRAVGLDGTGEQTLEEALDRQPTVLVM 245 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E G+ + + P+ F SLN+S Sbjct: 246 GSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279 >gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium EBAC31A08] Length = 240 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 + A+ P+I IL + N+G R+ + + + + A S V Sbjct: 85 SDKAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEV 144 Query: 68 IDSVRVFSNLKEAIA---DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + +NL + ++ IY + E A + + I Sbjct: 145 I-KIFHVTNLVNCLKYLQGININIYGLS--------------EHASKSHTDYNFTEASAI 189 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I G E G+ + + + I+ N LF S N+S A +++ E Sbjct: 190 IMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238 >gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 276 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 33/159 (20%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G V R L + K SSA + + V Sbjct: 126 VEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVV-------- 177 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGR 127 R+R+ + + A I + G+ +FG Sbjct: 178 -------------RDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGN 224 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL A ++ + P++ SLN++ A + ++ Sbjct: 225 EAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263 >gi|85712745|ref|ZP_01043790.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica OS145] gi|85693477|gb|EAQ31430.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica OS145] Length = 34 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 20/33 (60%) Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 + +F R E+ +LRGI++++DK ++ S Sbjct: 1 MRRLFNRARPEENELNILRGILASVDKQTKNSD 33 >gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R + L+ PR P +A S + + R+ ++ E +A L Sbjct: 135 ANLGAAFRNAAALGV-DAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRL-TSWPEDLALL 192 Query: 85 HFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 TTA +R+ L + + + ++FG E GLT +A + Sbjct: 193 RQAGFTTAALCLSDRSITLDELVARRY-----------EKLALVFGTEGDGLTPRALAAA 241 Query: 141 NAIISFPVNPLFPSLNI 157 +A + P++ SLN+ Sbjct: 242 DAHVRIPMDAGVDSLNV 258 >gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64] gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER] gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64] Length = 237 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 22/163 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ K VI+L + Q N+G + R F V + ++K ++ A Sbjct: 87 KPKSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDT---VISNVNFYNDKVVRATQGALF 143 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ +N ++ I L+ FI AT+ + +I L+E + + V Sbjct: 144 QVSLIKENNN-EDLIKVLNNEGYFIVATSL------------DKDSIKLDELKINKEKVV 190 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +I G E G+ + + P+ F SLN++ A +++ Sbjct: 191 LILGNEGNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIIL 231 >gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 249 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 22/163 (13%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ K VI+L + Q N+G + R F V + ++K ++ A Sbjct: 99 KPKSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDT---VISNVNFYNDKVVRATQGALF 155 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ +N ++ I L+ FI AT+ + +I L+E + + V Sbjct: 156 QVSLIKENNN-EDLIKVLNNEGYFIVATSL------------DKDSIKLDELKINKEKVV 202 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +I G E G+ + + P+ F SLN++ A +++ Sbjct: 203 LILGNEGNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIIL 243 >gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio salexigens DSM 2638] Length = 251 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 16/169 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +S +++L Q N+G++AR+++ + + A +SA A Sbjct: 94 ENLADSPLPLLVVLDQVQDPGNVGVLARSLYALGGAGIVTAKHGGAFLGPAAVKASAGAL 153 Query: 66 CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV L +AI IY A ++ S + + Sbjct: 154 NKLPVARVNNISQALDKAIDMGINIYG--AGLDDDSSSAYTAEIHTPAI----------- 200 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E G+ +I P F SLN++QA +++ E Sbjct: 201 LVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAGAMLISEFARR 249 >gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 32/168 (19%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70 I+L + N+G + R A + A+ + Sbjct: 101 ILLDGIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138 Query: 71 VRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFG 126 V A+ + + TA + K + + L ++ ++G++ G Sbjct: 139 ATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYKMNLKGSIGLVVG 198 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E G+ + + S P+ SLN S A ++ +E + + Sbjct: 199 NEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQRLE 246 >gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase TARBP1-like [Callithrix jacchus] Length = 1626 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V + L++ Sbjct: 1479 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQYLSVSAEQWLPLVEVKPPQLTAYLQQ 1537 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TAR+ + + P + ++ G ER G+ I Sbjct: 1538 KKTEGYTIIGVEQTARSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1582 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 1583 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1626 >gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571] Length = 255 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D + + A + +I G E G+++ Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKAAKQLPDFEKVPQLALIIGNEAHGVSST 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +LS+ + P+ SLN + A +M++ Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23] Length = 290 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 17/150 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80 NIG + R+ + + + + +A + + + + + E Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKAWRS--EG 203 Query: 81 IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 I LH TA R+N + P ++ + II G E GL E I Sbjct: 204 IDLLHRFGYKTAAMALRHNTVDIDDP---------QLAEADRLAIILGSEGPGLREETIT 254 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 S+ I P+ SLN++ A L WE Sbjct: 255 QSDFTIKIPMAAGVDSLNVAAASALAFWEL 284 >gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 325 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +++ ++ L + N+G V R++ F + + R S A +SA A + Sbjct: 170 KHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARL 229 Query: 69 DSVR---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 R + LK+ A + + + V I+ Sbjct: 230 PIARATNLTRTLKDWASKGVQVVG---------------LDAEGDTTLDDFDGSGPVVIV 274 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL+ +AI+S P+ SLN S A +++ + S Sbjct: 275 VGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 325 >gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032] gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris AB-18-032] Length = 373 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 12/153 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G V R+ F + + R + A +SA A + +V +NL ++ Sbjct: 232 PRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQV-TNLTRSLKAC 290 Query: 85 HFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 R+ V+ L + + + ++ G E GL+ + Sbjct: 291 ----------RDAGFMVVGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLT 340 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +S P+ SLN S A + + E V Sbjct: 341 VSIPMVSEVESLNASVAAAVTLAEVARRRAVEG 373 >gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 238 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P +LQ ++ P + P++ N G R + L LV P + Sbjct: 71 LQPQEARLQQTST-PHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 128 Query: 61 SANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSV-LAPKEAAIVLNERIFS 117 + + V + + I + I + TA+ + V P + + E Sbjct: 129 AGLDYHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDI 188 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G + + FP+ P SLN++ + ++E Sbjct: 189 PDPMDIMAGPHIY-----------QQVRFPMRPSLRSLNLANCASIALYEAWRQ 231 >gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 277 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + + +A S ++ R E + L Sbjct: 137 ENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAE-LKML- 194 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + + + P A L E + + ++ G E GLT + LS+A Sbjct: 195 -------KQKGFRVLAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDAR 247 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 248 VRIPMSRGTDSLNVATAAALAFYE 271 >gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter aerosaccus SK60] Length = 258 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 20/162 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L N+G R ++ + + + + A ++ ++V + Sbjct: 107 VLDQITDPNNLGACLRTAVAMGVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLA 166 Query: 76 -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + F++ T + K V +V I+ G E G+ Sbjct: 167 RTLTDIKKQGVFVFGTA--LDDTAKPVQD-----------CDLTGDVAIVMGSEGDGIRR 213 Query: 135 EEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ + SLN+S A ++++E Sbjct: 214 LTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMVLYEASRQR 255 >gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp. jejuni 414] Length = 227 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 27/157 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG +AR + + L + + E +S+ A +D V S Sbjct: 85 IVMLYGISDVGNIGAIARTAYALGVGALIFIG--EKLAMEGVIRTSSGAA--LDLPIVIS 140 Query: 76 NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 N +A++ ++ + YA+ + +I +G+ V ++ G E Sbjct: 141 N--DALSVINELKQIGFYFYASDGSGKEIHNV-------------KINNGKKV-LVLGSE 184 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 +GL+++ + + + F SLN+S A ++ Sbjct: 185 GFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221 >gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 313 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G V R++ F +V P +A +A A S Sbjct: 164 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT--SAGT 214 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A A + A A + V + + E V I+ G E GL+ Sbjct: 215 AARTPVARA-TNLTRALEAYKKAGIVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLS 273 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN A ++++E Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312 >gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 248 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + +S A + VRV Sbjct: 104 ILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLV 163 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +KE +I+ T + G ++ G E G++ Sbjct: 164 QTVKELKEQGVWIFGT--------------DMKGTDFRKWSAKGA-TALVIGNEGKGISP 208 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 209 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 241 >gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713] gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 248 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + +S A + VRV Sbjct: 104 ILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLV 163 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +KE +I+ T + G ++ G E G++ Sbjct: 164 QTVKELKEQGVWIFGT--------------DMKGTDFRKWSAKGA-TALVIGNEGKGISP 208 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 209 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 241 >gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 428 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%) Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ + P+I+ L N G + R+ F+ + + R + +A A Sbjct: 276 KSKSSNPIIVALDGVTDPHNFGAIIRSAEAFDCKGIIVPQRRSAGLTGTVAKVAAGALEH 335 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I RV NL AI +L I + + + KE A V+ + Sbjct: 336 IPVSRVV-NLNRAIDELKKKGFIIIGLSG---DGQVPISEFKEKAPVV-----------V 380 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVW 166 I G E G++ + ++ P+ SLN S A + + + Sbjct: 381 IVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCY 424 >gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 314 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G ++L + N+G V R+ F + + R + A +SA + + Sbjct: 160 TGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAK 219 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +KE + + + A + L+ V I+ G E Sbjct: 220 AVNITRTIKEFKDNGYIVVGLDAGGEHT-------------LDTFDGGADPVVIVVGSEG 266 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G++ + ++S P SLN S A +++ E ++ Sbjct: 267 KGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQRRAAA 313 >gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 278 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 12/175 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + +AP V++ P N+G + R+ +F + + +A + Sbjct: 108 LAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRA 167 Query: 61 SANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFS 117 S + + +V VF + + A R +V+ E + F Sbjct: 168 STGS---LFAVPVFRVPGPAQVLEFRDRQIA-----RGIPTTVVGTDEHGTAAVFDHDFR 219 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G++ + +++ P+ SL A + ++E Sbjct: 220 DATI-LVIGNETSGMSAAWQDACDELVAIPMGGTASSLGAPSAGAVALYEISRQR 273 >gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor lactoaceticus 6A] Length = 253 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 18/175 (10%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + P ++L+ +N G + R+ + + + +SA A Sbjct: 86 EARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV + ++E +++AT A + K V E + Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFATDA---SGPKPVY---ECDFTI--------PTC 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ ++ +I P S N S A ++ +E ++ + E Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 18/175 (10%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + P ++L+ +N G + R+ + + + +SA A Sbjct: 86 EARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV + ++E +++AT A + K V E + Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFATDA---SGPKPVY---ECDFTI--------PTC 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ ++ +I P S N S A ++ +E ++ + E Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium pseudotuberculosis FRC41] gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis 1002] gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis I19] Length = 313 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +++L + N+G V R++ F + + R + A +SA + + Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +N+ A+ + N V+ + V I+ G E G+ Sbjct: 222 -ATNITRALKEFQ----------QNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++I+S P+ SLN S A +++ E Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310 >gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] Length = 217 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A +R+ +FG E GL + + ++ + P+ SLN++ A + V+ Sbjct: 150 YADAELDRVDLAVPTAWVFGNEAHGLPADVLDRADLAVRIPMYGRAESLNLATAAAVCVY 209 >gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium] Length = 218 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 22/165 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72 V+I N+G + R+ ++ + L + K +SA A +I+ V Sbjct: 72 VVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPKVVRASAGAMFHVPIIEDVS 131 Query: 73 VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V E I D F ++ T++ ++ + + ++ G E G Sbjct: 132 V-----EEIRDNGFKVFGTSSH-----------EQQGSIDFTTADLTGKIALLVGNEAHG 175 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L ++ +A ++ P SLN++ A L+ +E +S Sbjct: 176 L--DDNVSVDAWLTIPHRGRSESLNVAMACTLVCFEAARQREGNS 218 >gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32] Length = 245 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 17/163 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +++L Q N+G + R+ + + R + +SA A I Sbjct: 94 NGLLLVLDGVQDPHNLGALIRSAACAGAQGVIIPKDRAVGVTAAVEKASAGAIETIAVAE 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L E A +IY E+ I + E+ +G V ++ G E Sbjct: 154 VTNIAQTLDELKAAGFWIYGADG-------------ESPISIFEQKLTGA-VALVIGSEG 199 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + ++S P+ SLN S A +M++E + Sbjct: 200 EGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVVRQR 242 >gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola DSM 14237] gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola DSM 14237] Length = 254 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + +SA A + +V ++K+A+ Sbjct: 118 NFGAIIRTAECTGVDGIIIQKKGAAPVTADTIKTSAGAAFKVPIAKV-DHIKDAVFYLQA 176 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + I AT E I + II G E G++ + + + Sbjct: 177 SGIKTIAAT---------------EKTENSVYDISFKEPCAIIMGSEDLGISPSILKVVD 221 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A + ++E + Sbjct: 222 DKAKIPLLGEIGSLNVSVACGVFLYEAVRQR 252 >gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL074PA1] gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL007PA1] gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL056PA1] gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL053PA1] gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL045PA1] gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA1] gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL038PA1] gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA2] gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA2] gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL043PA1] gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL099PA1] Length = 269 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A A + ++ + E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVAAMALSGDS----VTLDEVSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN++ A + +E Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268 >gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 363 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 226 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 284 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + T++ + P + + ++ GRER L + + Sbjct: 285 QAGYTVVMTSSAKGKPLFTTTLP--------------EKMVLVLGREREALPEAACSADD 330 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I+ +LN+S A +++ E Sbjct: 331 LCIAIDGTGKVETLNVSVATGVLLAEWWRQ 360 >gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri 100-23] Length = 249 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +S A + RV Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 KE +++ T K V ++ G E G+++ Sbjct: 163 QTAKELQERGVWLFGT----DMKGKDYRTWDAHGA-----------VALVIGNEGKGISS 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 240 >gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13] Length = 234 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V + G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001] Length = 269 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 12/149 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R F + L KA SA A + R S A+ DL Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPFARAAS--GAALLDL-- 188 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 A+ + L P +R+ ++ G E GL +A + + Sbjct: 189 -----AQRHDLTPLALTP--GGHETLDRLAPPSRALLLLGTEGPGLPEALMARARRL-RI 240 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVS 175 + P F SLN++ A + + + S Sbjct: 241 AMAPGFDSLNVATAGAIALHHLSGARLQS 269 >gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70 I+L + + N+G + R + + R + +SA A V + Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + LKE L F+ A + R+ +G++ G E Sbjct: 167 AKTMEELKE--RGLWFVCA----------------DMGGESMYRMNLTGPIGLVIGNEGE 208 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + + S P+ SLN S A ++ +E + Sbjct: 209 GVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250 >gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 163 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 21 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 78 DALSLINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 127 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 128 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 157 >gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG 18811] gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc gasicomitatum LMG 18811] Length = 252 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + S A + RV Sbjct: 107 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLV 166 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + E +++ T + A R + +I G E G++ Sbjct: 167 NTVSELKDRGIWVFGT---------------DMAGEDYRRWDAKGATALIIGNEGKGISP 211 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++++ P+ SLN S A L++++ + Sbjct: 212 LLKKKVDSMLTIPMTGHVQSLNASVAASLLMYQGFSSR 249 >gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702] Length = 303 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53 A +L +A+ +L + N G + R+ + L+ P P Sbjct: 139 RAEELCRNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196 Query: 54 -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 E ++ ++S+ F A+ D Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 ++ + S + + II G E +GL+ + I + + P+ SLN+ A Sbjct: 242 --------DDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293 Query: 163 LMVWECM 169 + E Sbjct: 294 VAFRELR 300 >gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii] gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii] Length = 248 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI + R+ F + ++ + R + + +D V V++ K+ I Sbjct: 62 AGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLD-VEVWNCAKDCIQ-- 118 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R+R +V + + + + +IFG E G ++ + ++ + Sbjct: 119 ------ALRSRGYRIAVTSTSHDTVSICDM-DWTIPTAVIFGNEHEGASDYSTSQADILC 171 Query: 145 SFPVNPLFPSLNISQAVLLM 164 P+ + SLN+S A ++ Sbjct: 172 GIPMFGMVDSLNVSVAAGIL 191 >gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149] Length = 376 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 18/164 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 + L N+G V R+ F + + R + A +SA A + +V + Sbjct: 227 VALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNL 286 Query: 76 --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +LK A D F + A + L + + + ++ G E GL Sbjct: 287 TRSLK-ACQDAGFMVVGLDA-------------DGDTDLYDLEAAVGPLVVVVGSEGRGL 332 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +S P+ SLN S A + + E + Sbjct: 333 SRLVGETCDLTVSIPMVSEVESLNASVAAAVTLAEVARRRAAEA 376 >gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31] Length = 234 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L + K V+IL + Q N G + R+ F + L L+ R+ +E +S A Sbjct: 80 EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228 >gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM 10507] Length = 290 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ N+ + L +A S I + + + Sbjct: 147 PTNVGAIFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGI 206 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R +A +E ++ +++ R+ + I+ G E GL E IA + Sbjct: 207 AHL-----RELGFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYT 261 Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168 + P++ SLN++ A + W+ Sbjct: 262 VCIPMSHGVDSLNVAAASSVAFWQL 286 >gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 218 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 15/151 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R+ F + +V R W A + V + + + + Sbjct: 80 QHDMNIGSIVRSANAFAADTVHIVG-RRRWNKRGAMVT-----DRYQHVVHHATIADLVE 133 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR + + VL E + ++FG+E GL++E +A ++ Sbjct: 134 --------WARGEGLPIIAIDNVD-GSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 184 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ S+N S A +++ + + Sbjct: 185 TVAISQFGSTRSINASAAAAVVMHAWVMQHV 215 >gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri DSM 20016] gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112] gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 249 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +S A + RV Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 KE +++ T K V ++ G E G+++ Sbjct: 163 QTAKELQERGVWLFGT----DMKGKDYRTWDAHGA-----------VALVIGNEGKGISS 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 240 >gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis F0399] Length = 265 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + L +E SA A + R+ + Sbjct: 118 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 170 Query: 83 DLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A T R + F + A ++ + ++ G E G++ L Sbjct: 171 -----IAQTIRALKEDGFW-IAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELC 224 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + P+ SLN S A ++++E M Sbjct: 225 DFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKDAVP 263 >gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 269 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 44/185 (23%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P L A +L + N+G + R L A + Sbjct: 112 PSVESLVKDAHRIA-VLENVTNPTNLGAIVRNAAALGLD---------------AVLFTH 155 Query: 63 NADCVI--DSVRV---------FSNLKEA-----IADLHF-IYATTARNRNNFKSVLAPK 105 + + + RV ++ L E I L F A RN + K + P+ Sbjct: 156 GSTDPLYRRAARVSMGTVFQIPWTFLPEGSEIDTIKGLGFKTVAMALRN--DTKDISDPE 213 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + I G E GL E IA + + P+ SLN++ + Sbjct: 214 ---------LKNADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAF 264 Query: 166 WECME 170 WE ++ Sbjct: 265 WELVK 269 >gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6] Length = 286 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCV 67 ++ +++L Q N G +AR ++ L + PR + AR ++A A Sbjct: 126 DAPLPLILVLDQVQDPGNAGTLARTLYAMGGAGLVI--PRHNGTFLGAGARRAAAGALER 183 Query: 68 IDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +V + L EA IY A + L ++ Sbjct: 184 LPVAKVMNIARALDEARDAGFLIYG--AAFGEGSLDAFTTRLHTPAL-----------LV 230 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 G E G+ + + ++ P+ F SLN++QA ++ Sbjct: 231 LGNEEHGIRPQVAKRCHHLLHIPMLRTFDSLNVAQAGGIL 270 >gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans SSM1] gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans SSM1] Length = 223 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 21/159 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANA---DCVIDSVR 72 +L Q +N G + RA F + + P+ G S +SA + ++ Sbjct: 81 VLDKIQDPQNFGAIVRAGHCFGIN--YFIIPKHGSSSVTPAVFKASAGSIIYSKIVKVTN 138 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L + + D F TA + N K + I + + II G E G+ Sbjct: 139 IAKTLDKLL-DAGFFI--TAADINGKKEL-----------SEIKTTKRNCIILGSEGEGI 184 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + ++ + SLN+SQ+ + + + Sbjct: 185 RSNVLKRAHITFKIEMTGKIDSLNVSQSAAITFYHFFKG 223 >gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str. JGS1721] Length = 257 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++E +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. NATL1A] Length = 229 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E+WG++ E +L + I P+ + SLN+S A +++E + V+ Sbjct: 114 GPTAFVLGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEAIRQRQVA 170 >gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101] Length = 257 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++E +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti 1021] gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 288 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + I R +N Sbjct: 137 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIAR--AN 194 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ I A + + AT +++++ + V ++ G E+ G Sbjct: 195 TEDFIRWQRAAGVQ-VVATHLAGSVDYRTIDY-------------KSKPVVLLMGNEQAG 240 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L E + A+ P SLN++ A +M++E + + Sbjct: 241 LPVELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLL 282 >gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str. 13] gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13] gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str. ATCC 3626] gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE str. F4969] Length = 257 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++E +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1] Length = 243 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 17/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 + N+G + R + + + R + S A + +V + L + Sbjct: 101 EDPHNLGAILRTCDAIEVDGVIIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDD 160 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ N + A ++ I+ G E +G++ + Sbjct: 161 LKKRGFWVVGC---ELNESQDYRAIDYNMPLV-----------IVVGSEGFGISKLVKSH 206 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A L++++ + Sbjct: 207 CDMNVVLPMTGHVTSLNASVATALILYQVYNSR 239 >gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 11/165 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + +++L N+G R + + + R + + A Sbjct: 90 LSQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPMTATVSKVACGAAET 149 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + VRV + A V EA L +G + I+ G Sbjct: 150 VPLVRVT----------NLARTMRALQEQGVWFVGTAGEATHDLYHSKLTG-PLAIVMGA 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ + +I P+ SLN+S A + ++E + Sbjct: 199 EGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243 >gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 II G E G+++E ++++++ P+ SLN S A +M++E + + Sbjct: 210 GRSAIIVGNEANGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQKV 264 >gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 245 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 20/165 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + IL + + N+G + R + + R + +SA A +V + Sbjct: 97 IFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTN 156 Query: 76 ---NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + E + F+ A + + +G++ G E G Sbjct: 157 LGHTIDELKEQGMWFVCA----------------DMGGETMYNLNLTGPIGVVIGNEGEG 200 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ + + S P+ SLN S A ++ +E + + Sbjct: 201 VSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQRLQKK 245 >gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] Length = 323 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +++ ++ L + N+G V R++ F + + R S A +SA A + Sbjct: 168 KHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARL 227 Query: 69 DSVR---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 R + LK+ A + + + V I+ Sbjct: 228 PIARATNLTRTLKDWASKGVQVVG---------------LDAEGDTTLDDFDGSGPVVIV 272 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL+ +AI+S P+ SLN S A +++ + S Sbjct: 273 VGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 323 >gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius LAA1] Length = 249 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + I+FG E+ G++ E ++ P+ S N+S A + ++E + Sbjct: 136 ARPTAILFGNEKDGVSPEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRA----- 190 Query: 178 KNVKEQNTPATKGELLSFL 196 + E Sbjct: 191 RETAGDRYALDADERHRLY 209 >gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC 33861] Length = 177 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 15/168 (8%) Query: 3 PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P + +K PV+ +L + + N+G R F + ++ L P + ++ Sbjct: 12 PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71 Query: 62 ANAD---CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A + + S L++ A+ + I A + P S Sbjct: 72 LGATSSVDWEHAPDLVSRLQKLKAEGYQILAIEQAEGSVMLHQFEP-----------SSD 120 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 Q +FG E G+ E + +S+ + P S NIS + +++W Sbjct: 121 QKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168 >gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length = 270 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+G + R + + +A S ++ R + + + Sbjct: 131 ENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFAR-AATWPDELN--- 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 T R++ + P AA L +G+ V + G E GLT + S+ Sbjct: 187 -----TLRDKGFQLLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRR 241 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 242 VRIPMSRGTDSLNVATAAALAFYE 265 >gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 269-3] gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 1153] gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii 208-1] Length = 251 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 18/154 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + R + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ + T ++ + + ++ G E G++ + Sbjct: 169 LKKAGYWFFGTAMEGQDY-------RYW--------DTKGKCVLVIGNEGKGISPLLLKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ P+ SLN S A +++++ + N + Sbjct: 214 MDQTLTIPMVGHVQSLNASVATGVLLYQMLNNKM 247 >gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P ++L+ N+G + R+ + ++ R + + + + A ++ Sbjct: 105 RENPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL +AI +L N VL A E G+ V ++ Sbjct: 162 QPYLRVRNLADAIVELQ----------NMGFLVLGLDGEADQTIEAALDGKRDRPVALVL 211 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ F SLN+S A + ++ Sbjct: 212 GAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252 >gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum WSM2075] Length = 152 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 17/159 (10%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L P + N G + R A + ++ P S+KA + ++ + Sbjct: 6 RIALYQPDIAGNTGTILRFAACLGLGVD---IIEPAGFPLSDKALRRA--GMDYLEMAAL 60 Query: 74 FSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ +A D ++A +L+ K A G ++FGRE G+ Sbjct: 61 TRHVDWDAFEDWRKVHA-------KRLVLLSTKATAPYTEFAFARGDI--LLFGRESAGV 111 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++A ++ P+ S+N++ +V ++ E + Sbjct: 112 PDPIHQAADARLTIPMQGGARSINVALSVAMVAGEAVRQ 150 >gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 276 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 33/159 (20%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 V+ N G V R L + K SSA + + V Sbjct: 126 VEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVV-------- 177 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGR 127 R+R+ + + A I + G+ +FG Sbjct: 178 -------------RDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGN 224 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL A ++ + P++ SLN++ A + ++ Sbjct: 225 EAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263 >gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 187 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 23/153 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L + N+ + R+ F + Q+ L +P +SS++ A +D+VR Sbjct: 13 KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPVLGRKSSAS-ARKWVDTVR 71 Query: 73 VFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 LKE H + AT+ P + + Q II G Sbjct: 72 HSDAQSLMRTLKE---GGHRVLATS----------CTPAAKPLGDYDMT---QPTAIIMG 115 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 E G+ E + L + + P+ + S N+S Sbjct: 116 NEHSGVAPELVELVDGEVYIPMYGMIQSFNVSV 148 >gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris BisA53] Length = 276 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 11/156 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +G V++L N+G + R+ F + + + + S++ A ++ Sbjct: 120 PQEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVITARHSPEATGVLAKSASGALELVPL 179 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V V NL A+ +L+ +R L + I Q + ++ G E Sbjct: 180 VSV-GNLARALTELN--------DRGFLTIGLDSE--GDDDLASIELTQPLALVLGAEGK 228 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL A+ + SLN+S A L ++ Sbjct: 229 GLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALY 264 >gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8] Length = 316 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N G + R+ T +V R+ P + A +SA I R +L + Sbjct: 179 PRNFGAMLRSAVAAG-TDGVIVPTREMAPLNAAAIKASAGTAPRIPIART-DDLPRVLTQ 236 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L F+Y + V ++ G E GL E Sbjct: 237 LKERGYFVYGAEGTAETPLWD--------------ADWDRPVAVVLGSEGQGLAPEVAEA 282 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A L+V+E + Sbjct: 283 CDELLSIPMRGPAESLNVSVATGLLVFEAARSR 315 >gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65] gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65] Length = 249 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 19/157 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74 + L + Q N+G + R + F + L +P P + K +S A I V + Sbjct: 110 TVYLYEVQDPGNLGTILRTLAWFGGFRCVL-SPNSVDPYNPKVVRASMGA---IFHVPIE 165 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N+ I D+ NR + + L L+ FS Q IFG E G+ + Sbjct: 166 QNIS--IDDMQ--------NRFDEFACLDI--NGKPLSSEGFSEQR-CFIFGNEARGVPH 212 Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECME 170 EE++ S + SLN++ AV + +E Sbjct: 213 EELSKLKTTAYSIQGAGVVESLNLATAVNMCAYELNR 249 >gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605] Length = 229 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + G E+WGLT++ L + + P+ + SLN+S A +++E + V+ Sbjct: 115 PTAFVLGAEKWGLTDQARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLAP 174 Query: 180 VKEQNTPATKGELLSF 195 + + + + L F Sbjct: 175 TQGEGLKPEQYQQLLF 190 >gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7] Length = 247 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 12/151 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + R + +SA A +V +NL A+ Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKHRAVGLTATVARTSAGALNFTPVAKV-TNLGAAMD 165 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L + V A V+ + +G +G++ G E G++ + Sbjct: 166 EL---------KKEGLWFVCA-DMKGEVMYRQNLTG-PIGLVIGNEGEGVSRLVREKCDF 214 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 S P+ SLN S A ++ +E + + Sbjct: 215 TASIPMKGDIDSLNASVAAGVLAYEIVRQRM 245 >gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium phytofermentans ISDg] Length = 248 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + N+G + R + + R + SA A +V Sbjct: 101 IILDGIEDPHNLGAMLRTANQAGAHGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNL 160 Query: 74 FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++E L F+ A + + + R +G++ G E G+ Sbjct: 161 VATMEELKQKGLWFVCA----------------DMSGEVMYRQNLTGPIGLVIGSEGEGV 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + P+ SLN S A+ ++ +E + Sbjct: 205 SRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQR 244 >gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797] gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797] Length = 261 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 38/178 (21%) Query: 9 QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 Q P+ IL Q N G + R+ AD + Sbjct: 105 QQEITSPLFLILDRIQDPFNFGAIIRSAEIMG------------------------ADGI 140 Query: 68 IDSVR--------VFSNLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFS 117 V A+ + + AT + R+ ++ + A+ +E++ Sbjct: 141 FSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLND 200 Query: 118 ---GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q +I G E G++ E A ++ P SLN++ + ++++E Sbjct: 201 YNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLYEASRQR 258 >gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 268 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 EN+ + R + + + +A S ++ R E +A Sbjct: 128 ENLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVA--- 184 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R L PK A L E Q V ++ G E GLT + +S+ Sbjct: 185 ------LKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLR 238 Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167 + P++ SLN++ A L +E Sbjct: 239 VRIPMSRGTDSLNVATAAALAFYE 262 >gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855] gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM 13855] Length = 253 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 21/153 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N G + R+ T +V R+ P + A +SA I R +L + Sbjct: 116 PRNFGAMLRSAVAAG-TDGVIVPTREMAPLNAAAIKASAGTAPRIPIART-DDLPRVLTQ 173 Query: 84 LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L F+Y + V ++ G E GL E Sbjct: 174 LKERGYFVYGAEGTAETPLWD--------------ADWDRPVAVVLGSEGQGLAPEVAEA 219 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN+S A L+V+E + Sbjct: 220 CDELLSIPMRGPAESLNVSVATGLLVFEAARSR 252 >gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM 21211] gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM 21211] Length = 266 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 13/175 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P +++LV + N+G + R+ LV + +S Sbjct: 105 PARPAPDLPHDALLLVLVGVEKPGNVGALLRSADGVG-ADAVLVVGGVDLENPNVIRASQ 163 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + L EA A L ++ R + + + P A + + V Sbjct: 164 GSVF----TQTLFTLPEADA-LPWL-----RAQGFRVAAITPDGAQNYWDADLT--GRVA 211 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E GL + ++ P+ SLN+S A L+++E + + Sbjct: 212 VCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNVSTAGALVLYEALRQRGPREQ 266 >gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium pseudotuberculosis C231] Length = 313 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +++L + N+G V R++ F + + R + A +SA + + Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +N+ A+ + N V+ + V I+ G E G+ Sbjct: 222 -ATNITRALKEFQ----------QNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++I+S P+ SLN S A +++ E Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310 >gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis] Length = 364 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 27/178 (15%) Query: 9 QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANA 64 ++S + P+ ++L + Q N+G + R+ + + + V R S +S+ Sbjct: 199 KDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDR---VASSVHRSCPLSPVVSKASSG- 254 Query: 65 DCVIDSVRVF--SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V++ + V+ +L++ +A + + I+ Sbjct: 255 --VMEVMEVYGYESLEDMLRMKVAQGWQVVGSVGTEAEATH-------IPIIRCSDFHLT 305 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL+ ++L A++S P P SLN+S A +++ +++ Sbjct: 306 KPTLLLMGGEGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHSMLQSR 363 >gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter alkaliphilus AHT 1] Length = 245 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%) Query: 2 TPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 TP+A L + P +++L Q N+G + R + + + R + A Sbjct: 81 TPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAAGCDGIIIPERRAAQMTPAAVR 140 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++A A + +V NL + + ++ V + Sbjct: 141 TAAGAAEYLPVAKVV-NLARCLDEC----------KDAGLWVYGADMDGESVYTTGDYQG 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E GL + ++ P+ SLN S A L+++E Sbjct: 190 GTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVYRQR 242 >gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter sp. EE-36] Length = 258 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P ++L+ N+G + R+ + +V + + + + A ++ Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVVG-MRHHAAPETGALAKTASGALER 161 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL +AI +L + VL A + E G+ V ++ Sbjct: 162 QPYLRVRNLADAIKELQ----------SMGYLVLGLDGEADMTVESALVGKRDRPVALVL 211 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + +A++ F SLN+S A + ++ ++S Sbjct: 212 GAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258 >gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC1989] gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium IMCC1989] Length = 127 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 14/132 (10%) Query: 43 LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 L ++ P +K + +R + N + I ++ K + Sbjct: 2 LHIIKPTGFDLDDKKLRRAGLDYGEWQDMRTYENWDDFI------------SQTAPKRLF 49 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQA 160 A I + ++FG E GL + + L + P+ S+N+S + Sbjct: 50 AISTKGARHYHDIEFANDDYVVFGPETRGLPDNVLYHTLMTEQVRIPMTENSRSMNLSNS 109 Query: 161 VLLMVWECMENS 172 V ++V+E Sbjct: 110 VAVIVYESWRQQ 121 >gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii 269-3] gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii 269-3] gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153] gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US] gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1] Length = 185 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 17/191 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P + N G +AR L L+ P K + D V + Sbjct: 5 IVLFEPLMPANTGNIARTCA--GTETVLDLIEPLGFQLDNKKMKRA--GLDYWDKVEIHK 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +LK + T + + + + +N +FG+E GL Sbjct: 61 HDDLKAFLE--------TLGPNDEMYLISKFSSKSYTDVDYTDENKNYYFVFGKETTGLP 112 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + + + P++ + N+S + +++ E + + K + Sbjct: 113 ETFMREYYDRNLRIPMSNHIRAYNLSNSAAMVIMEALRQQGFPHLEKSHHYENDKLKDDY 172 Query: 193 LSFLDYLEISL 203 + E +L Sbjct: 173 NR-HERYERNL 182 >gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1] Length = 287 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ N+G + R F + +V+ R + ++ + +V Sbjct: 138 VVVASGLADPRNLGALIRNAAAFGV-DWVVVDGRGADAFARLTIRAS-----VGNVFRVP 191 Query: 76 NL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWG 131 L EA+ AT + R + + A L + ++ G E G Sbjct: 192 LLVSEALP------ATVEQLRRELPATVVAATPAGELELDALAVDRPARQIVLVGNEGAG 245 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L + +A ++ + PV S+N++ A ++++ + Sbjct: 246 LDEDALARADRRVRIPVVAGADSVNVAAATAILLYALRPRGL 287 >gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170] gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC 11170] Length = 203 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 35/172 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G V R F + + A+ + +A+A Sbjct: 17 SKPYNVGNVFRTAHAFG----------------ASFVFTVAANYRQEEGAKVDT-SDALA 59 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---------QNVGIIFGRERWGLT 133 L F R ++ PK +V E + + G ER GL+ Sbjct: 60 SLPF-----YRFGEVD-DMMLPKGCKLVGLEIVPESIDLPSFRHPSCAAYVLGAERHGLS 113 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 +A + ++ P+ S+N+ A +++++ + + + V+ Sbjct: 114 PAMLARCDHVVKIPMR---FSINLGMAGAIVLYDRLITVGRFAPRPVRSGGP 162 >gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303] Length = 536 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 19/164 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81 N+G + R+ + L R + +A A + RV + +L EA+ Sbjct: 283 PHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSL-EAL 341 Query: 82 ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + E + + + I+ G E+ G++ Sbjct: 342 KQAGYRVIGLA--------------EEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHC 387 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + ++ P+ + PSLN S A + ++E + Sbjct: 388 DQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMKGVHGQTPSP 431 >gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + V+IL Q N+G R+ +T + + + + R +SA A I + Sbjct: 96 AGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRI-A 154 Query: 71 VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 V +NL + DL ++Y A + NVG++ G Sbjct: 155 VVAVTNLARCLRDLQKQGVWLYGLAG--------------EAEASLYSVDLRGNVGLVLG 200 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 201 GEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRLGA 249 >gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium HTCC2080] Length = 255 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 19/146 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV--FSNLKEA 80 +N+GM+ R+ + ++ P+ G +SA ++ + +L A Sbjct: 118 PQNVGMIIRSAVAGGID--AILYPKKGVATLGPLVIKASAG---IVFKAPIIPCDSLAPA 172 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + L A A N + L A ++V + G E G++++ L+ Sbjct: 173 LEQLQIGGAAIATLEGNSATSLFTYRPA----------KSVVYVLGGESDGVSSQVSNLA 222 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 + + P+ SLN++ A L+ + Sbjct: 223 DIKLHIPMGSGVESLNVAVAASLVAY 248 >gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341] Length = 251 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 18/154 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVR 72 V+IL Q N+G + R F + L +K S+ ++ ID +V Sbjct: 106 VLILDRVQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVD 165 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L E + D I+AT+ + + + NV +IFG E G+ Sbjct: 166 LVD-LLEHMKDFS-IFATSLKADKY-------------IEQLDNIVGNVAVIFGNEGSGV 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + E + N ++ + SLN+S A +++ Sbjct: 211 SEEILDKVNNLLKISMPGKAESLNVSIAAGIVMH 244 >gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 267 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +LA + L + G E WGL E + ++ P++ S Sbjct: 186 RARGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAES 245 Query: 155 LNISQAVLLMVW 166 LN++ A +L ++ Sbjct: 246 LNLAMAAMLCLY 257 >gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 324 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +FG E GL+ + + +N + P+ S N++ A + ++E +S Sbjct: 262 RPSAWLFGNEAHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALSLSHG 320 >gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A] gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112] Length = 290 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 17/150 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80 NIG + R+ + + + + +A + + +V+ + E Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQS--EG 203 Query: 81 IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + LH TA R+N + P ++ + II G E GL I Sbjct: 204 VDLLHRAGYKTAAMALRHNTVDIDDP---------QLAKVDRLAIILGSEGPGLRENTIT 254 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 S+ I P+ SLN++ A L WE Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWEL 284 >gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 253 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + S A + RV Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLV 167 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + E +I+ T + A R + ++ G E G++ Sbjct: 168 NTVNELKDRGVWIFGT---------------DMAGEDYRRWDAKGATALVIGNEGKGISP 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ + Sbjct: 213 LLKKKVDGMLTIPMVGHVQSLNASVAASLLIYQGFSSR 250 >gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM 17132] gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM 17132] Length = 171 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 10/148 (6%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R F + +L L P + ++ A +D ++A+A Sbjct: 32 NVGSIFRTSDGFRVGKLYLCGITATPPHREIEKTALGATASVDW----EYKEDALA---L 84 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + A + L + + L R Q +I G E +G+ E IA ++ +I Sbjct: 85 VRAL--KQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFGVNEELIAEADEVIE 142 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSI 173 P S N+S + + +W+ SI Sbjct: 143 IPQFGTKHSFNVSVSAGMFLWDYFAKSI 170 >gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17] Length = 151 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 22/158 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L +P + N+G + R F + + L+ P S++A + S A +D V + Sbjct: 5 LYEPDIAGNVGTLIRTAACFGIA-VDLIEPMGFPYSDRALARS--AMDYVDRAEVVRHAD 61 Query: 79 ----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +A A + ATT P + I+ G E G+ + Sbjct: 62 WTAFQAAARGRIVLATTLGALPLPDMRFRPDDV---------------ILLGSEGAGVPS 106 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN++ +++ E + Sbjct: 107 AVHDAADIRVRVPMRAGVRSLNVAITGGILMAEARRQT 144 >gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500] Length = 520 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 17/175 (9%) Query: 3 PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60 P + + + P+II L + +N G + R F L +V + P S A S Sbjct: 351 PDMTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDG-VIVTDKGSIPVSPFASKS 409 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S+ A I+ +F L A F+ A+ AR + + ++ E+ + N +I + Sbjct: 410 SSGA---IEEFPIFKCLSLA----SFLQASKARGWHIIGTSVSDPESKDITNVKI--DKP 460 Query: 121 VGIIFGRERWGLTNEEIALSNAIISF-----PVNPLFPSLNISQAVLLMVWECME 170 ++ G E +GL ++ ++ N +I N SLN S +++ Sbjct: 461 TVLVIGNEGYGLKDKVVSHCNEMIMIKGLQRSSNEKIDSLNASVTTGILIHHLQS 515 >gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 66 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 V ++ G E G+ + ++S P+ SLN+S A L ++E + +S Sbjct: 8 GPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQRTAAS 65 >gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594] gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594] Length = 270 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 16/147 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R L L++ S +A +S A I R L + Sbjct: 130 PGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQARWDDFLLWLRS 189 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + R+ ++ I+ G E GL + Sbjct: 190 GDGQLVAASLRDAVPYRG--------------AAYAAPCFILVGNESQGLPENYETACDL 235 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN + A ++ +E + Sbjct: 236 RVTMPMRGRADSLNAAVAGAVLAYEVL 262 >gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno] Length = 242 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 27/160 (16%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L L N + + K ++ + + Sbjct: 96 EGIILALDNVQDPGNLGTLIRLCDWFGIETL-LCNTQTVDCYNPKVVQATMGSLTRV--A 152 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A V L F ++ +I G E G Sbjct: 153 VHYVDLAGFLATCSL-------------PVYVMDLEGENLYTTEFP-EDCVLILGNEANG 198 Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMV 165 +T E +L+N I+ P F SLN++ A +++ Sbjct: 199 ITPEVRSLANKAITIP---RFSKHQQTESLNVAMAGAIVL 235 >gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium cellulolyticum H10] Length = 269 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 II G E G+++E ++++++ P+ SLN S A +M++E + Sbjct: 210 GRSAIIVGNEANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262 >gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80 Q N+G + R L + L + + K S+ + I VR + + + E Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPVVRRNLHTYVDEL 172 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A+ +Y T +N ++ + + +I G E G+ + + Sbjct: 173 KAEGVKVYGTALQNGAPYRDM--------------SQAEFFALIVGNEGAGVNAALLEKT 218 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + P+ SLN++ A ++V+ Sbjct: 219 DLNLYVPLYGQAESLNVAIAAAILVYHLR 247 >gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi DSM 13479] Length = 250 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 12/151 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + R + +SA A +V +NL I Sbjct: 111 EDPHNLGAIIRTANLAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKV-TNLAATIE 169 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L V A + L R+ +G++ G E G+ + Sbjct: 170 EL---------KEKGLWFVCA--DMNGELMYRLNLKGPIGLVIGSEGDGVGRLVREKCDM 218 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + S P+ SLN S A ++ +E + + Sbjct: 219 VASIPMKGDIDSLNASVAAGVLAYEIVRQRL 249 >gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum DSM 7109] gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum DSM 7109] Length = 195 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 33/176 (18%) Query: 2 TPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + + +A+ P IL PQ+ N G R T L L P EK Sbjct: 16 SSLTTSPRPAAEPPFHILFDQPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRR 74 Query: 61 SANADCVIDSVRVFSNLKEAIADLH---------------FIYATTARNRNNFKSVLAPK 105 + + +V++ + + A A L I+A T + F V + Sbjct: 75 AGLDYHDLANVQLHEDFEAAAAHLTGLSRQQAAAGAQPQTRIFAFTTHAKTWFTDVDFRR 134 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159 ++FG E GL E +A A + P+ P S+N+S Sbjct: 135 --------------GDVLLFGPEPTGLDEETLADPRITAQLRIPMLPARRSMNLSN 176 >gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107] Length = 279 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 22/188 (11%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWP 53 + P P+ + ++L Q N+G + R+ V+P G Sbjct: 104 LLPEPPKTCDFW----LVLDRIQDPGNLGSLLRSALAADVQSVWMGSG----VDPLGG-- 153 Query: 54 SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN- 112 KA +SA A + R ++AI DL + L P + + Sbjct: 154 --KALRASAGALLQLPHRRFGPEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPI 211 Query: 113 --ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + Q ++ G E GL A ++ P + SLN++ A + ++ E Sbjct: 212 PYWELDWTQPTALVLGTEGAGLHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRR 271 Query: 171 NSIVSSEK 178 +V +++ Sbjct: 272 ARMVGTQQ 279 >gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy] Length = 266 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + N+G + R+ +F + ++ L+ + +S ++ + Sbjct: 121 ILILDRIRSPYNVGSIFRSADSFGIQKIYLIEGCAAVDHSRTYKTSRGCTKTVE----YE 176 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L E A R + A + L+ F + + + G E G++ Sbjct: 177 ILSE--------EAMLTRLETIQLPLFALETGGTELDLFSFPPKGIA-VIGSEELGVSPA 227 Query: 136 EIALSNA---IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + A ++ SLN++ A +M+ Sbjct: 228 LLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMHGWFSA 266 >gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC 23685] Length = 267 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80 N+G + R +F + ++ P A R++ A+ V ID+ + L Sbjct: 129 PHNLGGIMRTCAHFGIRG--IMAPESAALESGAAVRTAEGGAEHVQAIDAEDFAATLDTF 186 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + I T++ R + ++ G E GL++ + Sbjct: 187 RRAGYTIVTTSSHKGTTQLH-------------RATLPAKIVLVVGHEGDGLSDGTLRQG 233 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + IS SLN+S A +M+ E Sbjct: 234 DLSISIGGTGSVESLNVSVATGIMLAEWWRQ 264 >gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126] Length = 260 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 19/156 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I L + Q N+G + R + L L +P P + KA SS A ++ Sbjct: 122 IYLYEVQDPGNLGTILRTLAWLGDFTLLL-SPNSVDPYNSKAVRSSMGAIFHVNM----- 175 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 L A+ L F+ + F G +FG E G+ + Sbjct: 176 ELNVALESL----------GERFERFAFLDMNGSNITSNTF-GDYQCYLFGNEARGVPVD 224 Query: 136 EIALSNAII-SFPVNPLFPSLNISQAVLLMVWECME 170 ++ NA + + SLN++ AV + +E Sbjct: 225 ALSKLNATAYTIAGSGKIDSLNLASAVNICAYELTR 260 >gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans ISDg] Length = 264 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V +++ I+ G E GL+++ +LS I P+ SLN + A ++++ Sbjct: 196 QGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESLNAAIAAAVLMY 255 Query: 167 ECMEN 171 E Sbjct: 256 ESYRQ 260 >gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49] Length = 170 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 58/146 (39%), Gaps = 8/146 (5%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N G + R F + + S + + ++ + + +I V +D+ Sbjct: 29 PANQGALFRVCEAFGVNNIIFFGNTIDIKSSRLKRTARSTEKLIPYSCV--------SDI 80 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 AT +N + ++A + I + ++ +I G E+ G++ + + +++ Sbjct: 81 KETIATLKQNNTRLIGLEITSDSAAIQELTIDTQTSIALIIGSEKHGISEDILQYLDSVY 140 Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170 + S+N+ Q+ + ++E + Sbjct: 141 HITMFGNNSSMNVIQSTGIALYEITK 166 >gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 276 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 L P A L + I + I+ G E GLT + ++ P+ P SLN++ A Sbjct: 205 LTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEHAMRATDVRARIPMQPGTDSLNVATAA 264 Query: 162 LLMVWECMENS 172 + +E + + Sbjct: 265 AIGFYEALRHR 275 >gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 6/168 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P ++ A +L N+G + R+ + + L + S Sbjct: 111 PSVEEVCADASRVA-VLEGIADSTNMGAIFRSAAALGIDAVLLTPSCCDPLCRRGVRVSM 169 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121 + R+ S L + I R +A + A+ +++ ++ + + + Sbjct: 170 GTIFQVPWARIGSELSQWPQQGMKIL----RKLGFKTVAMALNDKAVSIDDSQLMAEEKL 225 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I+ G E GL IA + P++ SLN++ A + W+ Sbjct: 226 AIVLGSEGNGLAPGTIADCDYTACIPMSHNVDSLNVAAASAVAFWQLR 273 >gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105] gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105] Length = 273 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 15/152 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + Q+ L + S+K + A + + Sbjct: 134 QDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDKVLRAGMGAQFGL----------QLYT 183 Query: 83 DLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +L + A +A V L PK + + +G +FG E G++ + + Sbjct: 184 ELDLLQALSAAKSKIPVRVTSLHPKSVDLFNADLKPAG---VWVFGSEGQGVSQAWLDRA 240 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I P + SLN+ + + ++E Sbjct: 241 SEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272 >gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 15/159 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73 ++IL Q N+G R+ + ++N +DG S A +SA A I+ +++ Sbjct: 100 ILILDSIQDPRNLGACLRSANAAGV-DCVIIN-KDGSASISALVHKTSAGA---INQIKI 154 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + +L A + N V+ +A L +I II G E +GL Sbjct: 155 FQ-----VTNLSRTI--KALQQQNIW-VIGLDSSANTLIYQIDLTTPNAIIMGSEGFGLK 206 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN+S A + ++E Sbjct: 207 RLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEINRQR 245 >gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4] gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter arcticus 273-4] Length = 256 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 24/170 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L N G R + ++ P+ + S A ++ V V + Sbjct: 101 VLDQITDAHNFGACLRTAVAMGVD--AVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L + F++ T + K + + II G E G+ Sbjct: 159 LARTLTKIKNAGVFVFGTA--LNADAKPLHTADLTG-----------KIAIIMGSEGEGM 205 Query: 133 TNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P++ SLN+S A + ++E +++ + Sbjct: 206 RRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQRTLAAGQ 255 >gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM 20583] gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 249 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + P ++L+ + + N+G + R + + R + +SA A Sbjct: 92 AAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAVGLTATVARTSAGAL 151 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +V +NL I +L + V A + + G +G++ Sbjct: 152 NYTPVAKV-TNLARTIENL---------KKEGIWFVCA-DMGGTQMYDLDLKGA-IGLVI 199 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ + I S P+ SLN S A ++ +E + + Sbjct: 200 GNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQRM 247 >gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3] gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis 89/1591] gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis ST3] Length = 242 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 18/161 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N G + R + + + R + +S A + R Sbjct: 94 NPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +++ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+++ + +I+ P+ SLN S A ++++E Sbjct: 199 KGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1] Length = 323 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 30/172 (17%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A N ++ L N+G + R++ F + + P +A +A A Sbjct: 160 AAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVI-------PERRAAGMTAGA 212 Query: 65 DCVIDS------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114 V +NL A+ D I A E +N+ Sbjct: 213 WKTSAGTAARTPVSRVTNLTRALQDYKKAGITIVGLAA-------------EGTHTVNDL 259 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 V I+ G E GL + ++ P+ SLN A ++++ Sbjct: 260 AELAGPVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311 >gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 249 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 19/171 (11%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E GL + ++ P+ SLN+S A + ++E + + Sbjct: 197 LVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRL 247 >gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63] gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08] gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07] Length = 265 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 18/159 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72 V+IL Q N+G + R + + + + + K S+ + +I++ + Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNIINASQ 179 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + L F ++ N +NF ++I G V ++ G E G+ Sbjct: 180 --DETVDMLKSLDFNIVSSYLNTDNF-------------YDKIDYGSKVALVIGNEANGI 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E ++ S+ ++ P+ SLN + + ++++E ++ Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKS 263 >gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 266 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 11/150 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + RA +T + + + + K S+ + + V + ++A+ Sbjct: 126 QDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFV-YVEDWQQAL- 183 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R + + A V E + G + G E GLT E A+++ Sbjct: 184 ---------GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN + A ++++E Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFETARQR 264 >gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599] gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599] Length = 271 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 15/154 (9%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSN 76 L + Q N+G + R + + L + + K ++ A I + + Sbjct: 128 LDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATMGALFRIPVFTQSLVDT 187 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 E + +++ E V + ++ G E G++ E Sbjct: 188 ADE-------------WKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGVSKEM 234 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 A ++ + P+ SLN + A + V+E Sbjct: 235 FAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQR 268 >gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33] gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33] gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84] gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407] gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7] gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1] gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14] Length = 242 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 18/161 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 ++IL N G + R + + + R + +S A + R Sbjct: 94 NPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIAR 153 Query: 73 VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + L + +++ T ++ +G + +I G E Sbjct: 154 VTNLSQTLDKLKEAGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNEG 198 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+++ + +I+ P+ SLN S A ++++E Sbjct: 199 KGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239 >gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus profundus DSM 14977] gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus profundus DSM 14977] Length = 237 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 34/183 (18%) Query: 3 PYAPQLQNSAKG--PVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSE 55 P AP +G P+++L+ N G + R+ +++ R R S Sbjct: 74 PDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHGVVSETR----RSAPLSP 129 Query: 56 KARSSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109 A +SA A + V+V LKEA ++Y Sbjct: 130 VAVKASAGAARHLPVVQVPNLPRYIEELKEA---GVWVYGLAG--------------EGE 172 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 V E + + + G E GL + ++ P+ PSLN + A + V + Sbjct: 173 VALEEADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWAL 232 Query: 170 ENS 172 Sbjct: 233 AAR 235 >gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7] gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7] Length = 269 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E + + + I+ G E GL I + I P+ SLN++ A + WE Sbjct: 206 EGLKRAEKLAIVLGTEGDGLKASTIEDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262 >gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis] Length = 215 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 23/170 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M+ + + G ++L + NIG + R+ F + + +V G P S Sbjct: 1 MSESVSEAKPKPDG-YLVLANISKNHNIGNMVRSACAFGMKE-VIV---IGQPKLMLYGS 55 Query: 61 SANADCVIDSVRVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A + +R F ++EA + + I + P+ A + F Sbjct: 56 HGTAHHI--KIRKFGTMEEAKAWFKENNIIVC---------GVEIVPE--AEDVRTHPFR 102 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166 G N I+ G E G+ +++ + + + P + SLN++ A +++ Sbjct: 103 G-NTAIMMGNEGSGMNEKQLGMCDHFVYIPQFSQGTASLNVNVAASIVMH 151 >gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca acetoxidans DSM 11109] Length = 257 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 14/132 (10%) Query: 59 SSSANADCVI---DSVRVFSNL---KEAIADLHFIYA-----TTARN--RNNFKSVLAPK 105 + + A V+ D +++ A A +H TTA + V+ + Sbjct: 122 AYAVGAQGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAE 181 Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLM 164 A + + ++ G E GL + +++ P+ SLN + A +M Sbjct: 182 ATASQTLYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVM 241 Query: 165 VWECMENSIVSS 176 ++E + Sbjct: 242 MYEIYRQRAAAQ 253 >gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 345 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L S Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPS 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B] gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus 12G01] gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B] Length = 247 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--KGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + I + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247 >gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130] gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130] Length = 285 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 14/163 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74 +L + N+G + R + + LV +A ++ A ++ Sbjct: 134 VLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRATMGSLFAKPLVR----- 188 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ ++ + V A+ ++ + + ++ G E+ GL + Sbjct: 189 ------LSRADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPLLLLMGNEQQGLDD 242 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E A + + + SLN++ A ++ + +++ + Sbjct: 243 EMAASCDHLALIAMGGAADSLNLAVATGIVTFAARSHALKAPA 285 >gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145] Length = 233 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 12/165 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L N V++L Q N+G V R+ + + L R + S+ Sbjct: 76 SLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFI 135 Query: 67 VIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 I +RV + I AT T N F + + + +I ++ Sbjct: 136 GIKFIRV-----------NSISATITWLKNNGFWVFSSALDKNSKKHNQINYPYKSVLVV 184 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ + + + I SLN+S A ++++E +E Sbjct: 185 GNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFEMIE 229 >gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327] Length = 256 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 22/169 (13%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSS 60 P + + + + V+ L D Q N+G + R F + + P D W ++ RS+ Sbjct: 91 PEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFG-AEAVICGPGTADPWNAKTVRST 149 Query: 61 SAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + A +ID +L + R + +V A Sbjct: 150 AGSIFALRIID----VPDLAAELK----------RLQAAGFTVAAAALDGQDYRSFGEWP 195 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 ++ G E G++ + +AL+++ + P +P SLN S + ++ Sbjct: 196 DRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVSAGIL 244 >gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf. griseus XylebKG-1] Length = 318 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 30/178 (16%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A N+ ++ L N+G + R++ F +V P +A +A A Sbjct: 160 AAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGA 212 Query: 65 --DCVIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114 + R +NL A+ + A + +V +E A Sbjct: 213 WKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA---DGEHTVEDLEELA------ 263 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E GL + + + SLN A ++++E Sbjct: 264 ----GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317 >gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus] Length = 1629 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 23/158 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKEAI 81 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1475 NLGGLCRTCEVFGASVLA-VGNLQCVSDKQFQHLSVSAEQWLPLVEVRPPQLVDYLQQKK 1533 Query: 82 ADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+ + I TA++ + + P + ++ G ER G+ I Sbjct: 1534 AEGYTIIGVEQTAKSLDLTR-YCFP--------------EKSLLLLGNEREGIPANLIQQ 1578 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + P + SLN+ + L++WE ++ Sbjct: 1579 LDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQRLLQRP 1616 >gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus sphaericus C3-41] Length = 250 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + R + SS A + VRV Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLA 161 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + E +I T A+ +++ + + + II G E G+ Sbjct: 162 QTVDELKERGIWIAGTDAKGSVDYRKM--------------DATLPLAIIIGSEGKGMGR 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + + P+ SLN S A L+++E ++E Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEANE 250 >gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 266 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 11/150 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + RA +T + + + + K S+ + + V + ++A+ Sbjct: 126 QDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFV-YVEDWQQAL- 183 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R + + A V E + G + G E GLT E A+++ Sbjct: 184 ---------GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN + A ++++E Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFETARQR 264 >gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii] gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii] Length = 240 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI + R+ F + ++ + R + + +D V V++ K+ I Sbjct: 62 AGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLD-VEVWNCAKDCIQ-- 118 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R+R +V + + + E +IFG E G ++ + ++ + Sbjct: 119 ------ALRSRGYRIAVTSTGHDTVSICEM-DWTIPTAVIFGNEHEGASDYSTSEADILC 171 Query: 145 SFPVNPLFPSLNISQAVLLM 164 P+ + SLN+S A ++ Sbjct: 172 GIPMFGMVDSLNVSVAAGIL 191 >gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC 29220] Length = 246 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 109 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 167 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + T++ + P + + ++ GRER L + + Sbjct: 168 HAGYTVVMTSSVKGKPLFTTTLP--------------EKMVLVLGREREALPEAACSADD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ +LN+S A +++ E Sbjct: 214 LCVAIDGTGNVETLNVSVATGVLLAEWWRQ 243 >gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 255 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 26/158 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R F + + + K ++ I VRV +++L + I Sbjct: 113 QDPGNLGTIIRLADWFGIEDIICSQNTVDVYNPKTVQATMGG---IARVRVHYTSLPDFI 169 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 R++ V + E+ S + I+ G E G+ E AL N Sbjct: 170 -----------RSQGKEIPVFGTFLDGQNMYEQPLSANGL-IVMGNEGNGIGKEVEALIN 217 Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 RKLYIP---NYPQGQETSESLNVAIATAVICAEFRRQA 252 >gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida DSM 20544] Length = 289 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + + N+G + R + + + R + +SA A + R+ N Sbjct: 140 VLLDELEDPHNLGALLRTADATGVHGILIPKRRSVSLNATVAKTSAGAVEYVPVARI-GN 198 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + L F V + ++ G E G++ Sbjct: 199 IAQTLKKL---------KEKGFW-VAGADMDGEKAYYEADLTGPLVLVVGSEGKGMSRLT 248 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + I+ P+ SLN S A ++++E M + Sbjct: 249 KEACDFIVRMPMVGRINSLNASVAGSILMYESMRQRLQKKG 289 >gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50] Length = 287 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 22/179 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P ++ AK I L + N+G + R + + L +A S Sbjct: 120 PTIEEVCQGAKRIAI-LEEVVNPTNVGALFRCAAALGMDAVILTGGCSDPLYRRASRVSM 178 Query: 63 NADCVIDSVR------VFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 I V+ ++A + ++ F A A R + + P Sbjct: 179 GTVFQIPWTMLSKKDGVWP--EQAMKTLKEMGFKTAAMA-LREDSVGIDDP--------- 226 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ S + + I+ G E GL + IA + + P+ SLN++ A + W+ Sbjct: 227 QLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFWQLGHQR 285 >gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380] gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 246 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 10/162 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 KG +++L N+G +AR+ + L R + A +SA A + R Sbjct: 95 KGVILVLDGITDPHNLGALARSAEAVGCQGIVLPKDRSCPITAAAEKASAGALAYLPVCR 154 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V + +A ++ + F +A NV ++ G E GL Sbjct: 155 VTN-----VARSLEVF-----KQAGFWVYGLAGDAGSQSLYDTDLRGNVVLVVGGEGKGL 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + +A+++ P+ SLN S A + ++E + V Sbjct: 205 RDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLRQQTV 246 >gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM 273] Length = 219 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 13/198 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ +++ + N+ + R+ + L V+ + R +A Sbjct: 14 LRRRQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDLHAVSKQRSI---HTRQHAAAGSSR 70 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + ++ +KE +A R + + A AA V I +I G Sbjct: 71 WTRLHLWHEIKE---PC------SALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGA 121 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTP 186 E G++ E I ++ I + + SLN+S A ++++E + S+ + ++ + Sbjct: 122 EWDGVSKEAIGEADRTIMVQTHGMVESLNVSVAAAVILFEAERQRSLNGMYRELRMEEEQ 181 Query: 187 ATKGELLSFLDYLEISLE 204 + L L Sbjct: 182 YRRLLFELSYPRLAEQLT 199 >gi|325193446|emb|CCA27771.1| rRNA methyltransferase putative [Albugo laibachii Nc14] Length = 220 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 33/139 (23%) Query: 46 VNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVL 102 V PR +++ +SA A ++ + + S L E +A S L Sbjct: 101 VAPR----NDEVSRASAGALEILAAANMLSQTKCLNEFLA---------------LSSAL 141 Query: 103 APKEAAIVLNERI------FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--- 153 + + ++ S ++ G E+ GL I ++ P N Sbjct: 142 SWRTVGASCSKHATPITGLSSKCPTILVMGNEQRGLRKNVIKCCEQLVCIPGNSKQEVTN 201 Query: 154 --SLNISQAVLLMVWECME 170 SLN+S A ++++E ++ Sbjct: 202 VDSLNVSVASGILLYELLK 220 >gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM 20548] Length = 241 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 14/142 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R+ F + + L +EK +S + V V +L+E Sbjct: 108 SDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGS--VFRENIVELSLEE--- 162 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R L+ I + + S ++ + G E GL+ + L++ Sbjct: 163 ---------IRKLKKNYRFLSSHMEGIDVRKYDSSNDSIILAIGNEANGLSEDIRKLTDD 213 Query: 143 IISFPVNPLFPSLNISQAVLLM 164 I + SLN + A +M Sbjct: 214 FIKISMQGKIESLNAAIAASIM 235 >gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702] Length = 318 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 19/165 (11%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++L + N+G V R++ F + + + RS+S A S Sbjct: 164 RPGLIVVLDNITDPRNLGAVIRSVAAFGGHGVVI---------PERRSASVTAVTWRTSA 214 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGR 127 + L A A + + R+ F+ V+ + V ++ G Sbjct: 215 GTAARLPVARA-TNLV-----RSLKKFQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGS 268 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ + I+S P+ SLN S A +++ E Sbjct: 269 EGKGLSRLVGETCDDILSIPMTSTVESLNASVAAGVVLSEFARQR 313 >gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella byssophila DSM 17132] gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella byssophila DSM 17132] Length = 263 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 33/180 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANA- 64 ++ V+IL N G + R+ + +V P G + A +S+ A Sbjct: 106 FESGESPLVLILDRITDVRNFGAICRSAECSGVH--AVVVPARGSAQINGDAMKTSSGAL 163 Query: 65 --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 +I++V+ N + I T E L Sbjct: 164 NFIPVCRETDLINTVKYLKN-----SGFQIISCT---------------EKGNDLVYDAD 203 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 II G E G+++ I LS+ P+ SLN+S A ++++E + + + Sbjct: 204 YSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVESLNVSVAAGVILFEAVRQKMKQA 263 >gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter thermophilus DSM 20745] Length = 252 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 18/174 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ + P++ L Q +N+ + R + L L + R + ++SA A Sbjct: 92 LRQAEGRPILALDHIQDPQNLATLMRTAEAVGVGGLLLPDRRAAGVTPAVVNASAGAVEH 151 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + V + +NL A+ + ++ A A P+ + + + + Sbjct: 152 L-RVALVANLGRALEECQEAGYWVVALEAG----------PEAQTLFTADLP---EPTVL 197 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G+ + ++ ++ P+ SLN + A + ++E + + + Sbjct: 198 VVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALYELLRRRLAAQG 251 >gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2] Length = 177 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75 I+L P++ N + R + +L ++ P K S A + D V Sbjct: 4 IVLFKPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHD 62 Query: 76 NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + D + Y T R K+ + + + + ++FG+E G+ Sbjct: 63 SYSDFYNKYKDKNIYYIT----RYGLKTYSD-----VDFKKEYENNDEIWLMFGKESTGI 113 Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + + + P+ S+N++ V ++ +E M Sbjct: 114 DKQVLKDNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQ 153 >gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas perforans 91-118] Length = 252 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 19/171 (11%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 94 LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 153 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 154 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 199 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E GL + ++ P+ SLN+S A + ++E + + Sbjct: 200 LVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRL 250 >gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01] Length = 247 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + I + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247 >gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16] Length = 260 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 14/168 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + IIL Q N+G + R+ + L S K + A+ Sbjct: 107 LPARIEQDCIILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFH 166 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V L+ + R +LA A V + G Sbjct: 167 LNIVEHC-TLE------------SLAPR-LAVPLLATSSHADAAVFDTDLRGPVAWVVGN 212 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E G+++ +A + P SLN++ A + ++E + + Sbjct: 213 EGAGVSDGWMAHVTRKVGIPQPGGLESLNVAAATAICLFEAVRQRRAA 260 >gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 166 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 E ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKTDPASD 165 >gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM 19965] Length = 271 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 19/154 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + Q N+G + R + + L SEKA SS + I V + Sbjct: 130 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDV-S 188 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + E I + F T+ ++ + +I IFG E G+ Sbjct: 189 IDELIKWKNETNIFFVGTSLQDAEPY--------------TQISLSGCCMFIFGNEGNGI 234 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + +S+ I P+ SLN+S A ++++ Sbjct: 235 SQKILNISDKKIYIPLKSNVESLNVSIATAVILF 268 >gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes DSM 20306] Length = 266 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 25/166 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 V++L ENIG + R ++ + L ++ S + R Sbjct: 112 VVVLEGVGDHENIGSLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDG 171 Query: 74 -FSN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 F+ L +A H + L P A+ L E + V ++ Sbjct: 172 GFTTWQRNLDLLADA--GFHLV-------------SLTPDNEAVHLAEALAGHDKVALMV 216 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E GLT + ++ P+ S N++ A + +E + Sbjct: 217 GAEGPGLTEHAMRATHVRARIPMAEGTDSFNVATAAAIAFYERQRS 262 >gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + + N+G + R ++ + + R + +SA A + RV +N Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARV-TN 164 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L I +L +++ T + + + R +V II G E G+ Sbjct: 165 LAATIKELKGRGMWVFGTDIEGTDYRR-----------WDAR----GSVAIIIGNEGKGI 209 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +++ P+ SLN S A +++++ Sbjct: 210 SPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244 >gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + + N+G + R ++ + + R + +SA A + RV +N Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARV-TN 164 Query: 77 LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L I +L +++ T + + + R +V II G E G+ Sbjct: 165 LAATIKELKGRGMWVFGTDIEGTDYRR-----------WDAR----GSVAIIIGNEGKGI 209 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + +++ P+ SLN S A +++++ Sbjct: 210 SPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244 >gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51] gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51] Length = 156 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA + VN G E+AR D V D+ RV Sbjct: 8 CIGLFNPKSPENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + + A L E + + IFG E L Sbjct: 56 HYDIPLIGIDDLQRII-----PLGCTPVAVELVDGARPLPEYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + E I P +N++ V +++++ M + + Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153 >gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC 17100] Length = 175 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 19/161 (11%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + +N G + R A N + ++ P S++A + A D VRV Sbjct: 23 RVALYQPDIPQNTGTILRMAACLNVAVD---IIEPCGFDLSDRALRRA--ALDYYDKVRV 77 Query: 74 --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + + +++ A+ AR P + NE + I+ GRE G Sbjct: 78 QRHASFELFLNNIN---ASGARLVLMTTKGATPYHDVLYRNEDV-------ILAGRESAG 127 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ ++ + P+ SLN++ ++ +++ E + + Sbjct: 128 VPDKVHESAHLRVRIPMQQSLRSLNVAVSMAMVLGEALGQT 168 >gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116] Length = 247 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + I + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247 >gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 18/154 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74 +IL + + N+G + R ++ + + R + +SA A + RV Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNL 165 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +KE + +++ T + + + +V II G E G++ Sbjct: 166 AATIKELKSRGMWVFGTDIEGTDYRRW---------------DAKGSVAIIIGNEGKGIS 210 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A +++++ Sbjct: 211 PLLKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244 >gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] Length = 268 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 20/146 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R F + + KA S A V+ RV A+ L Sbjct: 136 NMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADG-AAAVELLKA 194 Query: 87 ----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A + R ++ P V +FG E GL + + Sbjct: 195 RGFEVVALSPAGREPLSRLVRP--------------PRVAALFGTEGPGLP-DAVMAMTR 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 ++ P+ F SLN++ +++ Sbjct: 240 TVAIPMAAGFDSLNVATTSGIVLHHL 265 >gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor] Length = 345 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 8/157 (5%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ F + L+ +EKA ++ A + + S Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 239 Query: 76 NLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + L Y ++ + + L + + +++ ++ G E GL Sbjct: 240 GTWHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLL-NESLCLVLGSEGNGL 298 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + E + +++ P+ F SLN+S A + ++ Sbjct: 299 SAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334 >gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus DSM 14838] Length = 227 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 19/172 (11%) Query: 3 PYAPQLQNS---AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 P ++++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 67 PAPRTVEDTCRDARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRA 123 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S + ++ + L + AR+ ++ ++ + + + S Sbjct: 124 VRVSMGSVFLVPWTWLDGTLSDL-----------ARHGFRTAAMALTDDSISIADPVLAS 172 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL + IA ++ ++ P+ SLN++ A + W+ Sbjct: 173 EPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 224 >gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 27/165 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VID--SVR 72 IL N+G + R+ +T L L+ + KA S+ A V++ + Sbjct: 26 ILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGASFRVPVLELTNA- 84 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+ + KS+ + + SG II GRE G Sbjct: 85 --DDKDGAL--------------DQKKSLAHFQVDWIRHTKDDSKSGGGSAIILGREGEG 128 Query: 132 LTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENS 172 L E A + P+ SLN + ++++E M Sbjct: 129 LRREVRAAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQW 173 >gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 283 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---A 82 N+G R+ +V P P +A S + R+ A+ A Sbjct: 142 NVGAAVRSAAACG-YDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPALFHEA 200 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A R + ++ A+ L + V +I G ER GL + IA ++ Sbjct: 201 GFELA-ALALREDSQ-----DLRDYAMELG--AAPSRKVALIAGAERDGLKPQTIARADK 252 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ + SLN++ A+ + W Sbjct: 253 VVRIAMAHGVDSLNVAGAIAIACW 276 >gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 256 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+FG E+ G++ E ++ P+ S N+S A + ++E + Sbjct: 140 ARPTAILFGNEKDGVSPEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRA 194 >gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 266 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 16/148 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV- 73 V++L D N+G + R++ LV PR P +A S + R Sbjct: 121 VVVLEDVVDPTNVGAIFRSVGAIG-ADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTG 179 Query: 74 -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWG 131 + + A+AD F A A L P A+ + + R + I+ G E G Sbjct: 180 EWPETRAALADAGFHVAALA---------LTPD--AVSIRDFRAEEHARLAIVLGSEGPG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQ 159 L+ E I+ ++ ++ P+ SLN++ Sbjct: 229 LSAEAISSADTVVRIPMAHGIDSLNVAA 256 >gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74] Length = 315 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 10/168 (5%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A + ++ L N+G + R++ F + + R + A SSA Sbjct: 155 AAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 214 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 RV +NL A+ A + V + + E V I+ Sbjct: 215 AARTPVARV-TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIV 264 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ + +S P+ SLN A ++++E Sbjct: 265 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 312 >gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAVGEANINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + ++ P+ SLN+S A +++ Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228 >gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 248 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80 Q N+G + R L + L + + K S+ + I VR + S + E Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDEL 172 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A+ +Y T +N + + I ++ +I G E G+ + + Sbjct: 173 KAEGVKVYGTALQNGAPY--------------QEIPQSESFALIVGNEGAGVDAALLEKT 218 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + P+ SLN++ A ++V+ Sbjct: 219 DLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC] gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118] Length = 255 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D + + + + + + +I G E G++ Sbjct: 171 DLADVITDFQ---------DSAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSET 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +LS+ + P+ SLN + A +M++ Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2053A-b] Length = 253 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + N+G + R + L N + K + S + + ++ Sbjct: 112 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 168 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++ + D N + + + + +G+I G E G++ + Sbjct: 169 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 219 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+ SLN + A +M++ Sbjct: 220 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 250 >gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 01V1-a] Length = 159 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + N+G + R + L N + K + S + + ++ Sbjct: 18 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 74 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++ + D N + + + + +G+I G E G++ + Sbjct: 75 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 125 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+ SLN + A +M++ Sbjct: 126 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 156 >gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 11V1-d] gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV 09V1-c] gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2052A-d] gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 2062A-h1] gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF 3008A-a] gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195] gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D] gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B] gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G] Length = 255 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + N+G + R + L N + K + S + + ++ Sbjct: 114 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 170 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++ + D N + + + + +G+I G E G++ + Sbjct: 171 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+ SLN + A +M++ Sbjct: 222 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 252 >gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM 2876] Length = 246 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 25/167 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L + Q N+G + R T + + + + K S+ + + + + Sbjct: 98 VVLENIQDPGNLGTIIRTAEGAGATGIIMSDKTVDIYNPKTIRSTMGS---LFRMPFVYS 154 Query: 77 LKEAIADLHF-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 ++ +A +H ++A RN + +E V + ++ G E Sbjct: 155 -EDVVAAIHSLKQQNIKVFAAHLEGRNYYY-----EEDMKV---------PMAVLIGNEG 199 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 GLT E ++ I P+ SLN + + ++++E M + Sbjct: 200 NGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVILYEAMRQRHIQP 246 >gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110] Length = 264 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P+L A P ++L Q N G + R+ F Q+ + + K + Sbjct: 106 PARPELLPDA--PSVVLDRLQDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGM 163 Query: 63 NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + +A+ +L + AT++ + P Sbjct: 164 GAHFGLRLIEGVE--ADALDELKVPLVATSSHRGDWLHEARLP--------------HPC 207 Query: 122 GIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G++ A ++ I P SLN++ A + + ++V + Sbjct: 208 AWLLGHEGQGVSAALEARASHHIRIAQPGGEE--SLNVAAAAAICLHASGAAALVQAA 263 >gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str. JGS1495] gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str. JGS1987] Length = 257 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R+ + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRSAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++E +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704] Length = 263 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L Q N+G + R +T + L + K S+ + I + + + Sbjct: 116 IVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGS---IYRMPFYYS 172 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ D+ R ++ + A + + + G E GL E Sbjct: 173 -QDLKKDI-------GRLKDKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEI 224 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ I P+ SLN + A ++++E Sbjct: 225 AQQADTYIKIPMKGRVESLNAAIASSVLMFEAARQR 260 >gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50] Length = 268 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 12/155 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R ++T + + + K S+ + V + Sbjct: 125 VLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVRSTMGTIFRVPFV-YVDDP 183 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+ R + + V L +N + G E GLT+E Sbjct: 184 AKAVD----------RLKEHGIVVYGAHLDGCDLYAGKLK-RNNAFLIGNEGNGLTDELS 232 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ ++ P+ SLN + + L+ +E Sbjct: 233 SKADRLLRIPMAGQVESLNAAISATLLAYEAYRQR 267 >gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 295 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 18/160 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++IL + + N+G + R + + + R + +S A I RV + Sbjct: 147 ILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRAVGLTSTVAKTSTGAIEHIPVARVTN 206 Query: 76 NLKE--AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +E + D I+ T + A + + +G+I G E GL Sbjct: 207 LTQEIKKLKDRGLWIFGT---------------DMAGTDYRKWDAKGPIGLIIGNEGKGL 251 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ P+ SLN S A +++++ + Sbjct: 252 SPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYNSR 291 >gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2] Length = 154 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 15/160 (9%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72 I L P + +N G + R F + ++ ++ P G+P A A ID V R Sbjct: 3 VRIALYCPDIAQNAGTILRIGACFGI-EVHIIEP-AGFPVGDAGFRRAG-MDYIDQVTWR 59 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ A+ R + VL + A L F +V ++FGRE G+ Sbjct: 60 RHASFAAFDAE---------RRAEGRRVVLFTTQGAEPLFGFRFQPDDV-LLFGRESAGV 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A+++A + P+ SLN++ + + + E + + Sbjct: 110 PESVHAVADARLRIPMRAGVRSLNVAVSAGIALAEALRQT 149 >gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC 7001] Length = 229 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 24/173 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+ + R+ + + V + P+ + + + + + A+ Sbjct: 30 EKPHNLSAILRSCDAVGVLEAHAVCLKGRLPTFNSTAQGSQKWVPLHR---HPSAAAALQ 86 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEE 136 + R + + L+ + G E+WGL+ E Sbjct: 87 --------SLREQGF-------RLYGTHLSAEAVDYRSCDFTGPTAFVLGAEKWGLSPEC 131 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 L + I P++ + SLN+S A +++E + + + + Sbjct: 132 AGLVDQAIVIPMSGMVQSLNVSVATATLLFEALRQRQAAGTVPSAGEGLAPER 184 >gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis K5] Length = 256 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 24/170 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75 +L N G R + ++ P+ + S A ++ V V + Sbjct: 101 VLDQITDAHNFGACLRTAVAMGVD--AVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L + F++ T L I + II G E G+ Sbjct: 159 LARTLTKIKNAGVFVFGTA----------LNANAKPIHAADLT---GKTAIIMGSEGEGM 205 Query: 133 TNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P++ SLN+S A + ++E +++ + Sbjct: 206 RRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQRTLAAGQ 255 >gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase S-Adenosyl- L-Methionine Complex Length = 277 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 20/171 (11%) Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P +L + A+ G V++L ++ NIG + R + LV+ +++ Sbjct: 106 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQ 119 ++ V V ++ +EA++ L R+N +++ + + + Sbjct: 166 ASRG-YVFSLPVVLADREEAVSFL----------RDNDIALMVLDTDGDLGVKDLGDRAD 214 Query: 120 NVGIIFGRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + ++FG E+ GL E A +S P+ SLN+S +V + + E Sbjct: 215 RMALVFGSEKGGPSGLFQEASA---GTVSIPMLSSTESLNVSVSVGIALHE 262 >gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 315 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 16/175 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +N+ G +IL + N+G V R++ F + + R + A +SA Sbjct: 154 ARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + +++ + + A + L+ + V Sbjct: 214 AARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHT-------------LDTYNGATDPV 260 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ + I+S P+ SLN S A ++ E + Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315 >gi|117620534|ref|YP_857904.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561941|gb|ABK38889.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 168 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I LV+P+ EN+G V RA + ++ R E AR + + +++ + + Sbjct: 26 CIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 81 Query: 74 FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L E + A ++ E A L + + IFG E L Sbjct: 82 VDDLMEMVPAGCT-------------PVLVDLIEGATSLPDYVHP-ARAFYIFGPEDGTL 127 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +I P +N++ +V ++++ Sbjct: 128 DPARFKAVQEVIYVPTRGC---MNLAASVNVILY 158 >gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 286 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R +N Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPLAR--AN 192 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + A + + AT +++++ + + V ++ G E+ G Sbjct: 193 AEDFLRWQRAAGVQ-VVATHLAGSVDYRTIDY-------------NSKPVVLLMGNEQAG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 L E + A+ P + SLN++ A +M++E + + E Sbjct: 239 LPVELAREAGALARIPQSGRADSLNLAIATGIMLFEARRHLLSLDE 284 >gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella amazonensis SB2B] gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B] Length = 240 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 18/172 (10%) Query: 6 PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62 L ++ + P ++IL N+G R + +V P+D + + Sbjct: 82 EALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSAGLTPTVSKVAC 139 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + + T R EA L E G + Sbjct: 140 GA------AETVP-----LFQVTNLARTMKRIQERGVWIAGTAGEADSTLYEANLKG-PL 187 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I G E GL + +IS P+ SLN+S A + ++E + + Sbjct: 188 AIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQRL 239 >gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755] gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755] Length = 171 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 24/156 (15%) Query: 25 GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI------DSVRVFSNL 77 N+G V R F + + + R S + + +S +A+ + D + Sbjct: 33 PANLGSVFRNSEAFGIVNIWIHEANRSYLKSNRLKRTSRSAEFNLNIHFYEDEASILDTF 92 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + TT + E + + S + ++ G E+ G+ +E + Sbjct: 93 E----------GTT-----IGIEITKNSENLSSFKKGLKS--KILLVLGNEKLGINSETL 135 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + SLN++Q + + ++E I Sbjct: 136 NRLDRSYHIKMFGTNSSLNVAQTLGIALYEIRREQI 171 >gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 277 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 93 RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150 R++ + P +A L++ + G V I+ G E GLT + S+ + P++ Sbjct: 195 RDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRASDVRVRIPMSR 254 Query: 151 LFPSLNISQAVLLMVWECMENS 172 SLN++ A L +E S Sbjct: 255 GTDSLNVATAAALAFYERARLS 276 >gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 394 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++G++ G E G++ + I S P+ SLN S A ++ +E + + Sbjct: 338 GSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQRL 392 >gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium tuberculostearicum SK141] Length = 315 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 16/175 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +N+ G +IL + N+G V R++ F + + R + A +SA Sbjct: 154 ARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + +++ + + A + L+ + V Sbjct: 214 AARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHT-------------LDTYNGATDPV 260 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ + I+S P+ SLN S A ++ E + Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315 >gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18] gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18] Length = 249 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 11/169 (6%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 LQ G +++L Q N+G + R+ + + R + +SA A Sbjct: 90 LQGEGNGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDRAAGVTAVVEKASAGATET 149 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +V +N+ +A+ L + F A A L ++ F+G V ++ G Sbjct: 150 VAVAQV-TNISQALETL---------KKAGFWIYGADGSAKHTLYQQDFTG-PVALVIGG 198 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G+ + ++S P+ SLN S A + ++E + + Sbjct: 199 EGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEVVRQRLTKK 247 >gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 351 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 16/180 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82 N+ R+ + + +++ D R S A+ +D + ++S+ E A+ Sbjct: 166 GNVSAAFRSADALGVQSVHVISCEDNKRYRDNRHVSMGAEKWLD-IELWSSPAECFDALK 224 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A T+ ++ I+ G E G+++ + LS+ Sbjct: 225 KRGYRIACTSLGSDSVSVYDM------------DWSHPTAIVVGNETMGISDVALKLSDM 272 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 S P+ + S N+S A +++ + + + +N +L + E + Sbjct: 273 HCSVPMKGMVDSFNVSVAAGILMHHAVYDRVSRLGQNGDLTPEENRILLAEFYLRHREST 332 >gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus crispatus ST1] gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus ST1] Length = 251 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++++ T A E G+ V ++ G E G+ Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246 >gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y A + Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EANISYNEEDYSNK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length = 257 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 10/149 (6%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV+ N G V R + + K +S + + V ++ Sbjct: 111 VLVNIADPGNAGTVLRVADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLP-VVAEPDV 169 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + TT ++ L E +FG E GL + + Sbjct: 170 HRVLDACVAAGLTTVAAHGYAEADLTTAEQL---------DGPTAWLFGNEAHGLPEDVL 220 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A + + P+ SLN++ A + ++ Sbjct: 221 ARAEHAVRVPLYGKAESLNLATAAAVCLY 249 >gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM 10331] Length = 316 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 25/156 (16%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID----SVRVFSNLKEAI 81 EN+G + R F L L +P P + RS +A ++ + + + Sbjct: 149 ENLGALGRNAAAFGACALVL-DPTSADPRNR-RSVRVSAGHLLTLPLVRATPWPSALALL 206 Query: 82 ADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFSGQ-------------NVG 122 A A +T R R L P L E I + V Sbjct: 207 ARSQVRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHARAPGEHDLPRPRVA 266 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 ++ G E GL+ +A ++ +++ P+ S+N++ Sbjct: 267 LLVGSEGHGLSPSALAYADVLVTIPIANGVDSVNLA 302 >gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp. K90mix] Length = 251 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 25/164 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 V++L N+G R +V PR + A ++ A + V Sbjct: 104 VLVLDGVTDPHNLGACLRTADAAGAG--AIVTPRHHSAALTPAAIKVASGAAETVP-VVA 160 Query: 74 FSNLK---EAIADLH-FIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 NL A+ D + A + + + L P I+ G E Sbjct: 161 VGNLARTLAALKDAGMWTVGLDGAAHEDLYAVDLRP---------------PTAIVMGAE 205 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + + P+ SLN+S A + ++E Sbjct: 206 GEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249 >gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 38/181 (20%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---- 68 + +++L Q N+G + R+ S +A AD VI Sbjct: 95 RSLLVLLDRIQDPHNLGAIIRS------------------------SVAAGADGVIITEK 130 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--------- 119 SV V + + L F R N +++ KE G+ Sbjct: 131 ASVEVTPAVVKVSTGLVFRIPI-VRVVNMARTIETLKEEGFWTYAATMEGEPYYSVSFTD 189 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 +IFG E G+ + S+ ++S P+ SLN++ + +M++E + N Sbjct: 190 KAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEYRRQWALREGVN 249 Query: 180 V 180 Sbjct: 250 P 250 >gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521] gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 261 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 23/157 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSN 76 Q N+G + R + L +EK S+ + + +++ + + Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 LK+ FK V+ + + G V + G E G+++E Sbjct: 180 LKD----------------KKFKIVVTSLDTDKDFFQESLKG-KVLLTVGNEGNGVSDEV 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L++ + P+ SLN++ A ++++E + + Sbjct: 223 YELADTKVKIPMPGNAESLNVAIATSVIMYEKIRQDL 259 >gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 357 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 20/167 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA---DCVIDSV 71 + L N+G + R++ F +V P R + A +SA A V + Sbjct: 206 VALDGITDPRNLGAIIRSVAAFG-GHGVIV-PQRRSVGLTASAWKTSAGAAARTPVAMAS 263 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + LK F+ + L+E + + + ++ G E G Sbjct: 264 NLTQTLKALKQRGVFVVGLDGGGDMS-------------LHEFTLADRPIVVVVGSEGKG 310 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L+ + I+S P+ SLN A + ++E + + K Sbjct: 311 LSRLVTETCDTIVSIPIGASTESLNAGIAASVTLYEIGKLRAAARRK 357 >gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17] gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17] Length = 262 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 23/160 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI--DSVR 72 I L + Q N+G + R + F + L++P P + K +S A + ++ Sbjct: 122 AIYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPYNPKVVRASMGAIFHLPLETDV 180 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++L E H + R+ + A + +FG E G+ Sbjct: 181 ELASLSE---RFHRLACLDLNGRSLTEPGFADHDC---------------YLFGNEARGI 222 Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171 + + NA + SLN++ AV + WE M + Sbjct: 223 PAQALDELNATAYTINGKGQIESLNLASAVNICSWELMRS 262 >gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus] Length = 274 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 20/171 (11%) Query: 3 PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P +L + A+ G V++L ++ NIG + R + LV+ +++ Sbjct: 103 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 162 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQ 119 ++ V V ++ +EA++ L R+N +++ + + + Sbjct: 163 ASRG-YVFSLPVVLADREEAVSFL----------RDNDIALMVLDTDGDLGVKDLGDRAD 211 Query: 120 NVGIIFGRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + ++FG E+ GL E A +S P+ SLN+S +V + + E Sbjct: 212 RMALVFGSEKGGPSGLFQEASA---GTVSIPMLSSTESLNVSVSVGIALHE 259 >gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM 17678] Length = 256 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 20/165 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 S V++L Q N+G + R + + + K S+ Sbjct: 98 SKEDFDPSRHRKVLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSAMG 157 Query: 64 A----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + D +++S V ++ + +++ + +N+ + + Sbjct: 158 SGFYMDILLESQEVILSI---LKGAGLQIVSSSLDTDNY-------------YDEVTYAD 201 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ G E G+ + I S+ ++ P+ S N++ + L+ Sbjct: 202 GCALVLGNEANGINDFWIENSDLLVKIPMYGKAESFNVAISAALL 246 >gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda melanoleuca] Length = 1548 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 23/162 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1401 PTNVGGLCRTCEVFGASALV-VGSLQCVTDKQFQGLSVSAEQWLPLVEVKPPQLIDFLQQ 1459 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 1460 KKAEGYTVIGVEQTAKSVDLSQ-YSFP--------------ERSLLLLGNEREGIPANLI 1504 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + P + SLN+ + L++WE ++ Sbjct: 1505 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHGDT 1546 >gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1, mitochondrial-like [Pongo abelii] Length = 353 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 31/201 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N G V R+ + + + + R+ P + SSA A V+D VFS Sbjct: 149 VLDGIQDPHNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRE 128 L+ + T S P+ E I + ++ G E Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVG-----CPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNE 259 Query: 129 RWGLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSE 177 GL+ E A +++ P P SLN+S A +++ + Sbjct: 260 GSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTDGERK 317 Query: 178 KNVKEQNTPATKGELLSFLDY 198 + + + P+ + E LS + Sbjct: 318 QLLXDPQEPSARSEGLSMAQH 338 >gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca] Length = 1374 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 23/162 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1228 PTNVGGLCRTCEVFGASALV-VGSLQCVTDKQFQGLSVSAEQWLPLVEVKPPQLIDFLQQ 1286 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 1287 KKAEGYTVIGVEQTAKSVDLSQ-YSFP--------------ERSLLLLGNEREGIPANLI 1331 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + P + SLN+ + L++WE ++ Sbjct: 1332 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHGDT 1373 >gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 293 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 19/160 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-----FSNLK-- 78 N+G + R+ ++ LV P P +A S + R+ Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKH 195 Query: 79 -------EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 E + L F A + + L + + L + +IFG E Sbjct: 196 AWPEAGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHID--KLALIFGTEGD 253 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 GL++ IA ++ + P++ SLN++ + + + + Sbjct: 254 GLSHTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYATRK 293 >gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00] Length = 290 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 34/170 (20%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL----RLVNPRDG--WPSEKARSS 60 ++ ++ +++ Q N G + R L L ++ P+ + + AR + Sbjct: 130 KVPDAPLPLIVVFDQIQDPGNAGTIIRT-----LYSLGGAGVII-PKHNGVFLGQDARRA 183 Query: 61 SANADCVIDSVRVFS--NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114 + ++ + + NL AI + IY T+ + K+V + L Sbjct: 184 AVGC---LERLPISKAINLSRAIETANEKGFHIYGTS--IEKDSKNVFEAELKFPAL--- 235 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 +I G E+ G+ + + I+ P+ SLN++QA ++ Sbjct: 236 --------LILGSEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGII 277 >gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1] Length = 261 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P + A+ ++L Q N+G + R + L+ P S + + Sbjct: 103 PVPPPTRAFAESL-LVLDGVQDAGNLGTILRTAAAAGMRD-VLLTPGCAQAWSPRVLRAG 160 Query: 62 ANADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + V + L + A R ++ L Sbjct: 161 MGGHFCLRLYEHADV-AVLLQGYPGQILATGLGAGARGLYEMDLR--------------- 204 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 V +FG E GL+ AL+ + P+ SLN++ A + ++E + V+ Sbjct: 205 GTVAWLFGAEGRGLSMAVAALATDTVVIPMPGAVESLNVAAAAAVCLFEQVRQRRVA 261 >gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis L2-32] Length = 292 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 35/165 (21%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73 N+G + R+ ++ LV P G P +A S + R+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTG 195 Query: 74 --------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 F+ + A+ D A + + + + +++ + +IF Sbjct: 196 MRELHDLGFTTVAMALEDDSISLA------ELVRRLNNAETESDHIDK-------LALIF 242 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E GL++ I+ ++ + P++ SLN++ + + + Sbjct: 243 GTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287 >gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSV 71 +++L Q N+G + R+ + + L ++ S+ ++ + Sbjct: 83 ILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGGFVGIKFILVNS 142 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++ +IYA++ K + ++I Q I+ G E G Sbjct: 143 -LLATFEKLKKHNFWIYASS--LSKTAKPL-----------DQIVFNQPSAIVLGSEAKG 188 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + S+ I P+ SLN+S A ++++ Sbjct: 189 ISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica ACS-134-V-Col7a] Length = 245 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 26/172 (15%) Query: 9 QNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +++ + P++IL V+ N+G + R T L+ R P Sbjct: 87 ESNHENPLLILTDGVE--DPHNMGAIIRTAECVGATA-VLIPKRHNAPI----------- 132 Query: 66 CVIDSVRVFSNLKEAIADLHFI-YA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + V A+ + + T + + VL Sbjct: 133 ----NATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIP 188 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G++ + +++ P+ SLN S A ++++E + Sbjct: 189 TVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240 >gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 225 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 11/165 (6%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + ++L + N V R+ F + +L +V ++ + ++ + A + + Sbjct: 30 RHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVESKNKYKVQRDIARGAGRWVDLFNYN 89 Query: 73 VFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L +A+ L +++ + L P A + Q V + FG E G Sbjct: 90 EGPTPLLDAVNKL--------KSKGYKIAALTPD--AEHSIFDLPLDQPVALSFGTEWEG 139 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +++E +++ +S P+ S N+S +V L + + I S Sbjct: 140 ISDEIREIADYKVSIPMVGFTESFNVSVSVALTLQALRQRLIESE 184 >gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus GG] gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG] Length = 260 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +I+ T ++ ++ + + ++ G E G++ Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTALVIGNEGKGISPGIAK 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A I+ P+ SLN S A +++++ + Sbjct: 223 LMDATIAIPMAGHVQSLNASVAAGILMYQAFASR 256 >gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 272 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 13/156 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + +N+G + R + + L +E SA A + R+ + Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 180 Query: 83 DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A T R + + + +R + ++ G E G++ L + Sbjct: 181 -----IAQTIRALKEQGFWIAGADMGGEEIYDRANLTGALVLVIGSEGRGMSRLTRDLCD 235 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + P+ SLN S A ++++E + Sbjct: 236 FTVRLPMMGKINSLNASVAGAILMYEAQRQRRAKAA 271 >gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11] Length = 156 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 64/165 (38%), Gaps = 11/165 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P I L P + +N G + R + ++T + L+ P S+ A + ++ Sbjct: 2 PDIALYQPDIPQNTGTMLRLVACMSVT-VHLIEPAGFPLSDSALKRA--GMDYLERA--- 55 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 A+ A R + + ++ + + ++ GRE G + Sbjct: 56 -----ALKRHLNFAAFDDWRRTHNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPD 110 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 L++A ++ P+ SLN++ + +++ E + + +++ Sbjct: 111 AIHQLADARLTIPMAEGMRSLNVAVSCGMVLGEALRQTRAFPKRS 155 >gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly] gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly] Length = 244 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 13/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANAD 65 + Q+ ++IL + +N G + R FN+ L + N R +E +S+ A Sbjct: 87 EFQHKNNILILILDSIEDPQNFGAILRTAEQFNI-DLVITNQRKSVKDNETVLRTSSGAS 145 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + V N+ I + + A +N + + +I Sbjct: 146 QYVNKLTV-PNINNVIR----------YLKKQGFWIYASDIKGQAINNTKITDNKIALIM 194 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G+ N S+ +I P SLN+S + ++++E Sbjct: 195 GNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ 240 >gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN] gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN] gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1] gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16] Length = 185 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 17/191 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L +P + N G +AR L L+ P K + D V + Sbjct: 5 IVLFEPLMPANTGNIARTCA--GTETVLDLIEPLGFQLDNKKMKRA--GLDYWDKVEIHK 60 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +LK + T + + + + + +N +FG+E GL Sbjct: 61 HDDLKAFLD--------TLGPNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLP 112 Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192 + + + P++ + N+S + +++ E + + K + Sbjct: 113 ETFMREYYDRNLRIPMSDHIRAYNLSNSAAMVIMEALRQQGFPKLEKSHHYENDKLKDDY 172 Query: 193 LSFLDYLEISL 203 + E +L Sbjct: 173 NR-HERYERNL 182 >gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421] Length = 227 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L NIG + R + + L + R+SS A + + + + Sbjct: 85 IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + I +L + + + K + + +I +G+ V ++ G E +GL+++ Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + F SLN+S A ++ Sbjct: 192 IVKKCDECVGIVMKNNFDSLNVSAAFAILC 221 >gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel] gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel] Length = 239 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 23/149 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84 NIG + R+ F++ + L P+D P+E ++ +I ++V +NL+ + L Sbjct: 108 NIGAIIRSAAAFDINAILL--PQDNAPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 164 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +I T + F F + ++FG E G+ Sbjct: 165 KKHGFWIIGLTGSANDYF--------------TNKFITNKIALVFGSEDKGMRKLVEKTC 210 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + P++ SLN+S A ++ Sbjct: 211 DYLAKIPISKRVESLNVSNAASIIFHLLY 239 >gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris] Length = 948 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 23/162 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L +V+ ++ +S S +A+ + V V L++ Sbjct: 801 PTNLGGLCRTCEVFGASAL-IVDSLQCVRDKQFQSLSVSAEQWLPLVEVKPPQLIDFLQQ 859 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 860 KKAEGYTVIGVEQTAKSVDLTQ-YSFP--------------ERSLLLLGNEREGIPANLI 904 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + P + SLN+ + L++WE ++ E Sbjct: 905 QELDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHEDT 946 >gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120] gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120] Length = 273 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%) Query: 17 IIL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++L ++ Q N+G + R + L L + K +SA + + V Sbjct: 124 VVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATA-VS 182 Query: 75 SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +LK + + AT + + I + I+ G E Sbjct: 183 EDLKATVQLCQQAGMQVVATLPTAKLTYW--------------EIDWRKPSLILLGNEGA 228 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 GL+ + A+++ + P++P SLN++ LM++E Sbjct: 229 GLSPDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQ 269 >gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234] Length = 285 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 21/167 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R + + LV S + ++ + + R ++ Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVAR--AS 192 Query: 77 LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ + A + + AT +++++ + V ++ G E+ G Sbjct: 193 AEDFLRWQRSAGVQ-VVATHLSGSVDYRTIDY-------------RSKPVVLLMGNEQAG 238 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 L E + A+ P SLN++ A +M++E + + Sbjct: 239 LPAELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLLSLDAP 285 >gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2150] Length = 266 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 13/146 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV---FSNLKEA 80 N+G + R+ + R+ P A + +++ A VR+ ++E Sbjct: 122 PHNVGAILRSAEVLGAAA-VIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEM 180 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A + + + ++V+ + + + ++ G E GL ++ A Sbjct: 181 KALGYILLGLDGEAEDTMETVI--------ASTLANGPRPIALVLGAEGPGLRDKTKATC 232 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 +A++ F SLN+S A + ++ Sbjct: 233 DALMRIDSAGAFGSLNVSNAAAVSLY 258 >gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp. subtilis str. 168] gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp. subtilis str. SMY] gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis] gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80 Q N+G + R L + L + + K S+ + I VR + S + E Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDEL 172 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A+ +Y T +N + + I ++ +I G E G+ + + Sbjct: 173 KAEGVKVYGTALQNGAPY--------------QEIPQSESFALIVGNEGAGVDAALLEKT 218 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + P+ SLN++ A ++V+ Sbjct: 219 DLNLYVPLYGQAESLNVAVAAAILVYHLR 247 >gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria monocytogenes FSL F2-208] Length = 59 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + I+ G E +G++ + ++ P+ SLN S A L+++E Sbjct: 2 PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 52 >gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162] Length = 258 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +R + + G E GLT+ ++ +I P+ SLN + A ++++E Sbjct: 197 DRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLNAAMAGGILMYEAARQR 256 >gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116] gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116] Length = 218 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + + FG E GL+ E + ++ + P+ S NIS AV ++++ + Sbjct: 127 NKMAVFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVGIVMYSLL 177 >gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916] Length = 284 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 24/182 (13%) Query: 14 GPVIILV--DPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-- 68 P +L Q N+G + R AM ++ + K SS A + Sbjct: 113 SPAFVLALDRIQDPGNLGTLLRTAMAA--DVEMVWQGSGADPLNPKVVRSSTGAVLKLPL 170 Query: 69 ------DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 ++ + L +A + AT SV+ E L Sbjct: 171 HRFGPAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELDWRL-------- 222 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E GL E + ++ P +P SLN++ A + ++ E ++ + + Sbjct: 223 PTVLVLGNEGRGLHPELLDCCTHGVTLPHSPAVESLNVASAAVPLLLERRRATMTAPSQQ 282 Query: 180 VK 181 Sbjct: 283 SG 284 >gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201] Length = 316 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 12/148 (8%) Query: 46 VNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV- 101 V+P + KA S+A + V+ V + S + A + A R + + Sbjct: 173 VDPY----NPKAVRSTAGSLFHLPVLTGVDLVSFVAAARERSVQVLAADGHARASVDELA 228 Query: 102 ----LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 L A + +FG E GL++ E+ L++ ++ P+ SLN+ Sbjct: 229 DAALLHWAGTAPHSEHEVRLDGPTAWLFGNEAQGLSDAELELADLPVAVPLYGRAESLNV 288 Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNT 185 A + ++ + + Sbjct: 289 GTAATVCLYASARAQRRAGGVVTGPGTS 316 >gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF] gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6] gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF] Length = 254 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 21/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R F + + L S K S ++ + ++ +L E I Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175 Query: 82 ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +Y T +++ ++ II G E G++ E + Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ + P+ SLN+ A ++++ Sbjct: 222 SSTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax] Length = 454 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAII----SFPVNPLFPSLNISQAVLLMVWECMENS 172 + N ++ G E GL+ E + L+ + PV P SLN + A ++++E Sbjct: 382 AQSNTALVIGGETHGLSLEALQLAEKTLGQRLFIPVVPWVDSLNSAMAASILLFEGRRQL 441 Query: 173 IVSSEKNVKEQ 183 + +E + +Q Sbjct: 442 LNLTETRLPQQ 452 >gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM 10507] Length = 260 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L D Q N+G + R + L + K S+ + + V + N+ Sbjct: 113 VLEDLQDPGNVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYI-ENM 171 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQN----VGIIFGRERWGL 132 +EA+ L K V A L + + G++ G E GL Sbjct: 172 EEALRLL------------KKKKVST---YAAHLQGKNTYDGESYLRGTAFFVGNEGNGL 216 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ I P+ SLN + A ++++E Sbjct: 217 SRQLSEKADCWIRIPMEGQVESLNAAMAAGILMYEAGRQR 256 >gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 255 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 27/178 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF- 74 +L N+G R+ + + L PRD + R +SA + + V Sbjct: 97 VLDGVLDPHNLGACLRSAEAAGVDAVIL--PRDNACPVNATVRKASAGSASRVPVCTVTN 154 Query: 75 -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 S+L+EA + +R+ + L + ++ G E Sbjct: 155 LSRTLSSLQEA--GFWLVGMAGEGSRSLYALDLDM---------------PLVMVMGGEE 197 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187 GL + + P+ SLN+S A + ++E S Q A Sbjct: 198 KGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQRRNLSPARPVAQEKSA 255 >gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia] gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia] Length = 407 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +L + ++ + + N+G + R +Q+ + + KA Sbjct: 225 EQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284 Query: 64 A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115 I + L EA D H A + R R N +++ + Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECM 169 G + +I G E G++ E N I P+ SLN++ A+ L+++E Sbjct: 339 --GAHNLLIIGGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELR 396 Query: 170 E 170 Sbjct: 397 R 397 >gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8] Length = 242 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 23/173 (13%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P A + +++++ + L + Q N+G + R + F + L++P P + K +S Sbjct: 89 PPATRGESASREKALYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPFNPKVVRAS 147 Query: 62 ANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A +++ L + A I + K ++ Sbjct: 148 MGAIFHVPLETEVALDTLGQRYA---RIACLDIGGDSITKPEFQAQDC------------ 192 Query: 120 NVGIIFGRERWGLTNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171 +FG E G+ + + A + P SLN++ AV + V+E Sbjct: 193 ---YLFGNEARGVPKQALTELGAHAYTIPGAAAIESLNLASAVNMAVYELNRA 242 >gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter piscolens W5455] Length = 269 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 19/168 (11%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L A +++L Q N+G V R + N R + +SA A Sbjct: 107 ALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACVVCQNDRSATVNGTVVKTSAGAAF 166 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +V N+ A+ L ++ R S P + + Sbjct: 167 RLPVAQVV-NVGRAVERLKRKGFWVVGLDHRTDETVWSSALP--------------ERLA 211 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G++ + ++ FP+ +LN S A L ++E + Sbjct: 212 LVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFEWVR 259 >gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149] Length = 255 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 24/162 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70 I+L + + N+G + R + + R + +SA A V + Sbjct: 110 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 169 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + LKE L F+ A + R+ +G++ G E Sbjct: 170 AKTMEELKE--KGLWFVCA----------------DMGGESMYRLNLKGPIGLVIGNEGE 211 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + + S P+ SLN S A ++ +E + Sbjct: 212 GVGRLVKEKCDFVASIPMKGEIDSLNASVAAGVLAYEIVRQR 253 >gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614] Length = 237 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E WGL E AL++ + P+ SLN+S A L ++ Sbjct: 181 AGPSAWLFGNEAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLY 229 >gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 152 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 17/159 (10%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L P + N G + R A + ++ P S+KA + ++ + Sbjct: 6 RIALYQPDIAGNTGTILRFAACLGLGVD---IIEPAGFPLSDKALKRA--GMDYLEMAAL 60 Query: 74 FSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ A D R ++ + VL +AA F+ ++ ++FGRE G+ Sbjct: 61 TRHVDWNAFED--------RRKKDGRRLVLLSTKAATPYTNFSFADGDI-LLFGRESAGV 111 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++A ++ P+ S+N++ +V ++ E + Sbjct: 112 PDPVHQAADARLTIPMQGSARSINVALSVAMVAGEAIRQ 150 >gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 249 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + V+IL Q N+G R+ +T + + + + R +SA A I Sbjct: 96 AGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPV 155 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGR 127 V V + +A R+ K + A ++S NVG++ G Sbjct: 156 VAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGG 201 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 202 EADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRLGA 249 >gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 158 SPPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 217 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R +NL + D + V+ + + + + ++ G E Sbjct: 218 AR-ATNLTRTLKDWA----------DRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGK 266 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S A +++ E Sbjct: 267 GLSRLVRQNCDEVVSIPMAGQAESLNASVAAGVVLAEIARQR 308 >gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans DSM 18053] Length = 256 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 23/153 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---- 81 N G +AR + Q +V + G + A +S+ A + R NL E + Sbjct: 120 NFGAIARTAECAGV-QAIIVPTKGGAQINADAMKTSSGALNFLPICR-EPNLYETLTYLR 177 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + L I T +++ + II G E G++ E I L+ Sbjct: 178 NSGLQIIACTEKTDKSLYDIDFTV---------------PTVIIMGSEEDGISKEFIDLA 222 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ P+ SLN+S A ++++E + I Sbjct: 223 DSGARIPLAGQVESLNVSVASSVVLYEAVRQRI 255 >gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium ferrooxidans DSM 10331] Length = 251 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 10/149 (6%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +++ + N+G V R+ F + L R + +A + + S+ Sbjct: 103 VVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSVPLTPTVTKVAAGGVEWLRFA-LVSS 161 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + A+ L R R SV +AA + + + + ++ G E GL Sbjct: 162 IPAALRRL--------RARGV-WSVGLDADAATSVFSLTLATERLALVVGAEGRGLAPLV 212 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + P+ SLN S A + + Sbjct: 213 RRGVDVTAAIPLAATVASLNASVAASIAL 241 >gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 249 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L +A+G ++L+ Q N+G R+ +T + + + + R +SA A Sbjct: 91 LVEAAQGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 I V V + +A R+ K + A ++S NVG Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 197 LVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQRLGA 249 >gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira thiodismutans ASO3-1] Length = 240 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 11/143 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G +AR + + + R A +SA A I +V +NL + Sbjct: 102 QDPGNLGTLARTLAALGGAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQV-TNLARTLD 160 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + F A + + E+ F ++ G E G+ + Sbjct: 161 HID---------QAGFNIYAATMDQGQSVLEQTF-VFPAVLVLGGEEKGIRPNVLKRCPG 210 Query: 143 IISFPVNPLFPSLNISQAVLLMV 165 I P+ SLN++ A L++ Sbjct: 211 KIHIPMAGGMDSLNVAHAGALIL 233 >gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168] gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168] Length = 345 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVNVLDDFR 266 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + T+ + K + A L E+ + ++ G+E GL + + Sbjct: 267 QAGYTVVTTSG---DRGKPL-----FATALPEK------MVLVLGQEADGLPDAARDPDD 312 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + SLN+S +++ E Sbjct: 313 LCVKIDGTGNVESLNVSVVTGILLAEWWRQ 342 >gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 152 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 34/159 (21%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS-----SANADCVI 68 I LV+P+ EN+G V RA + VN G + A+ S + + + Sbjct: 7 CIGLVNPKTPENVGSVMRAAGCYG------VNSVFYTGRRYDIAKKFCTDTKSQHLNVPL 60 Query: 69 DSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +LK+ I D + + E A L + IFG Sbjct: 61 IG---VEDLKDIIPLDCVPVA-------------VDLIEGAKPLPDYKHP-PRAFYIFGP 103 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E L E I P N +N++ AV ++++ Sbjct: 104 EDGTLKKEITDFCRETIYVPTNGC---MNLAAAVNVIMY 139 >gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM 21211] gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM 21211] Length = 149 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 23/146 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75 +L P+ N+G VAR L L+ P ++ + + V + Sbjct: 5 VLYTPEKAGNVGNVARTCAVLG-AHLHLIRPYGFHLQDREFRRAV--MDYLSGVTLHEHA 61 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + ++ + A + R A ++ + + ++FG E GL Sbjct: 62 SWTHFQASLPAGAHVTAFSTR--------------ATHIHTTAPVSRGMYLLFGPESRGL 107 Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158 + ++ A P SLN+S Sbjct: 108 PDWLLSGLQAA-RIPQPAGGRSLNLS 132 >gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018] gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018] gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22] Length = 229 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 24/175 (13%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 YAP + A +++L NIG +AR ++ + + N + S R+S+ Sbjct: 72 DYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKTINNSGIVRTSAG 131 Query: 63 NADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RI 115 + S + S L +A I AT + L + +I Sbjct: 132 ALLDLPFCIHPRSADLASELIDA--GFTLIGAT---------------MDGVDLKKYGKI 174 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 V + G E G++ + + +S + F SLN+S A ++++ Sbjct: 175 EKSDKVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229 >gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071] Length = 307 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G + R++ F + + R + A SSA RV Sbjct: 156 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 215 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +NL A+ A + V + + E V I+ G E GL+ Sbjct: 216 -TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 265 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +S P+ SLN A ++++E Sbjct: 266 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 304 >gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola ACS-139-V-Col8] Length = 258 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 19/148 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 Q N+G + R + L V+P ++K ++ + + + +LK Sbjct: 122 QDPGNLGTMIRTADAAGFDAVILGQGCVDPY----NDKVLRATQGSIWHLP--VIHYDLK 175 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 AI L AT + + + V +I G E G+ + I Sbjct: 176 AAIPALQ---AT------KIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGDLIQ 226 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + P+ SLN++ A ++++ Sbjct: 227 AADHSVYIPMLGQAESLNVAVATGILLF 254 >gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748] Length = 243 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R T L+ R P + V AI Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145 Query: 83 DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + A T + + V+ I+ G E G++ Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +++ P+ SLN S A ++++E + Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243 >gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister micraerophilus DSM 19965] Length = 272 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 V+ +L + I+ G E G++ + + ++ P+ SLN+S A Sbjct: 200 VVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVA 259 Query: 161 VLLMVWECMENS 172 L+++E ++ Sbjct: 260 AALLIYESVKQR 271 >gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister microaerophilus UPII 345-E] Length = 272 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 V+ +L + I+ G E G++ + + ++ P+ SLN+S A Sbjct: 200 VVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVA 259 Query: 161 VLLMVWECMENS 172 L+++E ++ Sbjct: 260 AALLIYESVKQR 271 >gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 316 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +N G +IL + N+G V R++ F + + R + A +SA Sbjct: 154 ANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + +KE + + + A L E V Sbjct: 214 AARLPVARATNITRTVKEFQKNGYQVVGLDA----GGDHTLDTYEGGTD---------PV 260 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ + ++S P+ SLN S A ++ E + Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRAAD 315 >gi|213029355|ref|ZP_03343802.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 32 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 20/30 (66%) Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSR 251 + +F R +E+ +LRGI++++++ ++ Sbjct: 1 MRRLFTRARPESQELNILRGILASIEQQNK 30 >gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31] gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31] Length = 268 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 12/157 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 + V++L+ +N+G + R F + + L KA S A + + Sbjct: 120 RAIVLVLMGIANHDNLGGIFRNAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAW 179 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A + A R+ + L+P AA + R+ ++ G E GL Sbjct: 180 --------LAPGEDVVALLERH-DFQALALSP--AADLTLARLDPPARAAVLLGAEGPGL 228 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + +A + + P+ F SLN++ +++ Sbjct: 229 SPAVMARA-RTVGIPMAGGFDSLNVATTSGIVLHHLR 264 >gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701] Length = 290 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 20/173 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71 V+ L Q N+G + R + +L D + + R+S+ A + ++ Sbjct: 133 VLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAGAALALPCRRLE-- 190 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ L+ A + A+ + ++ ++ G E G Sbjct: 191 QLLPRLESARTGGVQVVASVVAGGIPYW--------------QLDWTLPTVLLLGNEGAG 236 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 L E +A S+ ++ P + SLN++ A ++ E + +Q Sbjct: 237 LAPELLAASSHQVTIPHSGAVESLNVAVAAAPLLLERWRQLTGENAGQQPQQP 289 >gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Equus caballus] Length = 355 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 22/189 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 IL Q N+G V R+ + + + + + R+ P + +SA A V+D VFS Sbjct: 151 ILEGLQDPRNLGAVLRSAYFLGVDK-VITSRRNSCPLTPVVSKASAGAVEVMD---VFST 206 Query: 77 LKEAIADLHFIYA-----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +A + A E I Q ++ G E G Sbjct: 207 --DDLAGFLQVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSG 264 Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVK------ 181 L+ E A +++ P P SLN+S A +++ + + Sbjct: 265 LSQEVQASCQVLLTILPGRQLPPGLESLNVSVATGILLHSICSQRKAFPAEQKRGKLLQD 324 Query: 182 EQNTPATKG 190 Q PAT Sbjct: 325 PQEPPATSE 333 >gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 272 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 16/163 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73 V+++ Q N+G + R+ + + L + KA S+ + + + Sbjct: 119 VVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIEADL 178 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L +A+ + T A I II G E G + Sbjct: 179 ADLLPKAVKAGIQVLCT--------------DLKAEKNCYEIDFTIPTWIIVGNEGKGTS 224 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E L+ + P+ SLN++ A ++++E + Sbjct: 225 REAGELATQSMIIPMKGHAESLNVAMAATVLLFEASRQRMKPG 267 >gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170] gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---- 74 L P + +N G + R + ++ L+ P ++ + ++ + Sbjct: 6 LYQPDIPQNAGTILRLGACLGV-EVDLIEPCGFVLDDRRLRRA--GMDYLERAALVRHSS 62 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 SN +AD +L + +A E IF +V ++ GRE G+ Sbjct: 63 WSNFVSGLAD------------EARLILLTTQASAFH-AETIFQPNDV-LLLGRESAGVP 108 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E ++ I P+ P SLNI+ L++ E + + + Sbjct: 109 PEVHERADLRIRVPMVPGVRSLNIAVTAALVLGEALRQTASWPQ 152 >gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46] gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R] Length = 253 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 27/176 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANAD 65 ++ + L D Q N+G + R F + +P + K ++ Sbjct: 97 DMEAIRNSLCLALDDIQDPGNLGTIIRLADWFGIEH-IFCSPNTVDVFNPKTIQATMGG- 154 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 I V+V+ A+ DL V + E+ S + II Sbjct: 155 --IARVKVYYT---ALPDLMHSLG--------NVPVYGTLLDGENMYEQPLSKNGI-IIM 200 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174 G E G++ E L N + P +P SLN++ A ++ E + + Sbjct: 201 GNEGNGISPEIEKLVNRKLYIP---NYPAERETSESLNVAIATAIVCAEFRRQAAL 253 >gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4] gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4] Length = 172 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 18/148 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L +P+ N+G V RA V +G +A + + + + Sbjct: 11 LYNPKDPTNVGAVMRAA---GCYDATQVR-YNGARYNRAVKLRTDTKNTHERIELVE--- 63 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + DL TA+ + K V +N IFG E L E + Sbjct: 64 --MDDL------TAQLTQDVKVVCVELAVGATALPLFTHPENAVYIFGPEDGSLPQEVVD 115 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ ++ P N +N++ V ++++ Sbjct: 116 KADHVVYIPTNGC---MNLAATVNVVLY 140 >gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3] gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3] Length = 172 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 35/180 (19%) Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + K II L +P+ N+G V RA V +G +A + + Sbjct: 2 TTKPTAIIGLYNPKSPTNVGAVLRAA---GCYDAAQVR-YNGTRYSRAVKFQTDTQNSQE 57 Query: 70 SVRVF--SNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +++ +L +AD + + TA + +N Sbjct: 58 RIQLVEMEDLTANVADDVEIVCVELVVGATA-------------------LPQFTHPENA 98 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 +FG E L E I ++ ++ P + +N++ V +++++ M ++ + + + + Sbjct: 99 IYVFGPEDGSLPQEMIDKAHHVVYVPTHGC---MNLAATVNVVLYDRMAKTLGTIDDHQQ 155 >gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062] gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002] gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062] gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002] Length = 153 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72 P I L +P + +N + R L ++ P S+K +D +R Sbjct: 5 PKIALYEPDIPQNTAAIIRTCACLG-ADLEIIEPCGFLFSDKRFKRVV--MDYMDEKMIR 61 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + + E ++ N + +L ++A + F + ++FGRE G+ Sbjct: 62 FYQSSDEFFK-----------SKKNERVILLTTKSADSYTDFKFESNDT-LLFGRESAGV 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + L + P+ SLNI+ +V +++ E + + Sbjct: 110 PDHVHNLIKYRLKIPMMDNKRSLNIASSVAIILSENLRQT 149 >gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1] gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum PYR-GCK] gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1] Length = 314 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65 ++A ++ L + N+G + R++ F + L R + A +SA A Sbjct: 159 SDAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAART 218 Query: 66 CVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V + + LK+ AD + + I ++ Sbjct: 219 PVARATNLNRTLKQ-YADAGLQVVGL--------------DAGGDTTIDEIDGLTPTIVV 263 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 G E GL+ + I+S P+ SLN S A +++ E +S Sbjct: 264 VGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVAAGVVLAEIARQRRLS 314 >gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei] Length = 698 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 24/152 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R+ W F + LV P+ PS SS A + V+ F N E Sbjct: 140 PGNLGAIGRSAWYFGADGICLVKGRGPKTITPS--MIKSSCGALEHLP-VQQFENFHEFR 196 Query: 82 ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTNE 135 + + AT LA ++A I + + VGI+ G E G++ E Sbjct: 197 DSIKLNSGELVATC--------DPLAAEKAGITVKSLNEWKPKKTVGIVLGDEGVGISKE 248 Query: 136 EIALSNAIISF-PVNPLFP---SLNISQAVLL 163 + + +IS P SLN+S + Sbjct: 249 ILNFCDTVISIAPTREHQSSVTSLNVSVVAAV 280 >gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 6_1_27] Length = 243 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R T L+ R P + V AI Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145 Query: 83 DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + A T + + V+ I+ G E G++ Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +++ P+ SLN S A ++++E + Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243 >gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49725] Length = 316 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 16/175 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +N G +IL + N+G V R++ F + + R + A +SA Sbjct: 154 ANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213 Query: 65 DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + +KE + + + A L E V Sbjct: 214 AARLPVARATNITRTVKEFQKNGYQVVGLDA----GGDHTLDTYEGGTD---------PV 260 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ + ++S P+ SLN S A ++ E V+ Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRVAD 315 >gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 281 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 L P A+ L E +G+ V ++ G E GLT + ++ P+ P SLN++ A Sbjct: 211 LTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVATAA 269 Query: 162 LLMVWE 167 + +E Sbjct: 270 AMAFYE 275 >gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162] Length = 247 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +G++ G E G++ + S P+ SLN S A ++ +E + +V S K Sbjct: 188 GPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLVKSSK 247 >gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM 7271] Length = 243 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L + N + + K ++ + + Sbjct: 96 EGVILALDNVQDPGNLGTLIRLCDWFGIETL-ICNSQTVDCYNPKVVQATMGSLTRV--A 152 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A + A L F ++ +I G E G Sbjct: 153 VHYVDLAGFLATCAL-------------PLYAMDLDGENLYTTEFP-EDCVLILGNEANG 198 Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECME 170 ++ E AL++ II+ P F SLN++ A ++V + + Sbjct: 199 ISPEVRALADGIITIP---RFGKLQQTESLNVAMAGAIVVSQVRK 240 >gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM 16992] Length = 288 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76 N+G + R+ ++ LV P G P +A S I R+ F+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTG 195 Query: 77 LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E + DL F A + + L + + + +IFG E GL++ Sbjct: 196 MQE-LHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHID--KLALIFGTEGDGLSHH 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ ++ + P++ SLN++ + + + Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM 17393] Length = 267 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 23/174 (13%) Query: 3 PYAPQLQNS---AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 P ++++ A+ V+I +VD NIG + R+ + + L + +A Sbjct: 107 PAPRTVEDTCRDARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRA 163 Query: 58 RSSSANADCVIDSVRVFSNLKE-AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERI 115 S + ++ + L + A A T + + VL Sbjct: 164 VRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAMALTDNSISIADPVLT------------ 211 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 S + I+ G E GL + IA ++ ++ P+ SLN++ A + W+ Sbjct: 212 -SEPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNVAVAAAVAFWQLR 264 >gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759] Length = 272 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 30/164 (18%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R+ +T ++ P P + +V + AI Sbjct: 129 QDPGNMGTIFRSAEAAGITG-VIIGPGSCDPY---------------NPKVVRSTMGAIF 172 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---------NVGIIFGRERWGLT 133 + F+ ++ + ++ A K +++ G+ + + G E GL+ Sbjct: 173 RVPFV-----QSDDLIYTIDALKRKGVLIYGAHLDGEELYDTEFPDKIAFLIGNEGNGLS 227 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ ++ P+ SLN + + L+ +E M + + Sbjct: 228 KAVSDTADRLLRIPMEGKVESLNAAISATLLSYEAMRQRRSARQ 271 >gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM 1251] Length = 249 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 13/162 (8%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +++N K ++ L Q +N+GM+ R+ + + L S +SA Sbjct: 99 ANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVILPKKNSAKISPLVIKASAGT 158 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + + L E + +L ++ +L+ A + + Sbjct: 159 LFKLP-IYYCNTLDEVLKEL----------KDTKIYLLS--SHAKKSIYDLRQEDKSIFV 205 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G++ E AL N I+ P+N SLN++ L+ + Sbjct: 206 LGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAF 247 >gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 248 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 27/173 (15%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L + N + + K ++ + + Sbjct: 96 EGVILALDNVQDPGNLGTLIRLCDWFGIETL-ICNSQTVDCYNPKVVQATMGSLTRV--A 152 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +L +A + A L F ++ +I G E G Sbjct: 153 VHYVDLAGFLATCAL-------------PLYAMDLDGENLYTTEFP-EDCVLILGNEANG 198 Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECMENSIVSSEK 178 ++ E AL++ II+ P F SLN++ A ++V + + + K Sbjct: 199 ISPEVRALADGIITIP---RFGKLQQTESLNVAMAGAIVVSQVRKLANEKMRK 248 >gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces violaceusniger Tu 4113] Length = 316 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 16/172 (9%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 A ++ L N+G V R++ F + + R + A +SA Sbjct: 157 SAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216 Query: 64 --ADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + + EA + A + + L + Sbjct: 217 TAARTPVARATNLTRTLEAYQKAGLTVVGLAA-------------DGEVELQDVEALDGP 263 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E GL+ + + P+ SLN A ++++E Sbjct: 264 LVIVVGSEGKGLSRLVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRR 315 >gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta] Length = 1623 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V+V L++ Sbjct: 1476 PTNLGGLCRTCEVFGASALV-VGSLQCISDKQFQHLSVSAEQWLPLVQVKPPHLIDYLQQ 1534 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TA++ + + P + ++ G ER G+ I Sbjct: 1535 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1579 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 1580 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDAKP 1623 >gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG] gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF] Length = 314 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G + R++ F + + R + A SSA RV Sbjct: 163 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 222 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +NL A+ A + V + + E V I+ G E GL+ Sbjct: 223 -TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 272 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +S P+ SLN A ++++E Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311 >gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis subsp. lactis V9] Length = 223 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 25/186 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + P + P++ N G R T L LV P + Sbjct: 55 MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 113 Query: 61 SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + D V N ++ + + I A TA A L + Sbjct: 114 A--GLDYHDMAHVVLHPNFEDLVESMPNSRIIAFTA--------------HATKLYTEVE 157 Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FG E + + + +A + + P+ P SLN++ + ++E Sbjct: 158 YKPTDILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 217 Query: 173 IVSSEK 178 + Sbjct: 218 GFDGGQ 223 >gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 25 GENIGMVARAMWNFN-LTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 +N+G + R + L PR+ ++ +S+ A ++ +V +NL + Sbjct: 103 PQNVGNLLRTCEVLGGVGALI---PRERSSPMNQTVVKASSGAIFHLEISKV-ANLGRVL 158 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + E + ++ G E G++ + +S+ Sbjct: 159 KEFKEMGG-----------WVFAVEKGGKDIRELEIVLPCALVLGSEDKGVSKSLLEVSD 207 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 ++S P+ SLN+ A + +WE + Sbjct: 208 EVLSIPMKGKTTSLNVGSAGAIAMWEAVR 236 >gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3] Length = 157 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 17/168 (10%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---A 64 + + I L P + N G + R L + ++ P S++ + A Sbjct: 1 MSDIRPEIRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRAGMDYIA 59 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + +E ATT R ++ A + +I + ++ Sbjct: 60 AAALTRHVSWDRFEEWR-------ATTGRR------LVLASTKAALPYTKIAYRHDDILL 106 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FGRE G+ + + I P+ S+N++ + ++ E + + Sbjct: 107 FGRESAGVPDHVHEKAQERIIIPMVEGQRSINVAMSAAMITGEALRQT 154 >gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM 5305] Length = 270 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 28/188 (14%) Query: 1 MTPYAPQLQNSAKGP--VIILVDP--QLGENIGMVARAMWNFNLTQLRL----VNP---R 49 + P P L GP +L P +N+G + R F + L V+P R Sbjct: 98 LKPDNPSLSALLNGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRR 157 Query: 50 DGWPS-EKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 S A+ V+ ++ E + + A + + + Sbjct: 158 CVRVSMGTIFQMPIRTAESVLAELQQLKT--E--HNCDLL---AAEDSEQSRPLYE---- 206 Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ ++ G E GL + L +A+ P+ SLNI+ A + ++E Sbjct: 207 ----LPAATPGKRRVLLLGNEADGLGQPFLKLVDAVYDIPMADGVDSLNIANAAGIFLYE 262 Query: 168 CMENSIVS 175 Sbjct: 263 LTSERPRP 270 >gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC 43184] Length = 269 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 20/162 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +L + + A T + + VL + + I+ G Sbjct: 176 WTWMDGSLGDLGRLGFRTAAMALTDNSISIDNPVL-------------ATEPRLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL+ E IA ++ ++ P++ SLN++ A + W+ Sbjct: 223 EGDGLSQETIAAADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264 >gi|291278680|ref|YP_003495515.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans SSM1] gi|290753382|dbj|BAI79759.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans SSM1] Length = 421 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 28/154 (18%) Query: 31 VARAMWNFNLTQLRLVNPRDGWPS-----------------EKARSSSANADCVIDS-VR 72 ++R+ F + ++NP + R + V +S + Sbjct: 271 ISRSCKTFGVRNYYVINPLPAQREIANRVLKHWREGYGATYNENRKEAFGVTKVKESLIE 330 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V +++A + + TTAR R++ + L + F + V ++FG WG Sbjct: 331 VIDEIEKAEGEKPLLVGTTARKRDDA-------VSFDELKKLTFE-KPVLLLFGT-GWGF 381 Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMV 165 +++ + + + I+ F L++ AV +++ Sbjct: 382 SDDMLEVCDYILERIKGYDEFNHLSVRSAVAIIL 415 >gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 248 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 55/153 (35%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + + N+G + R + + + R + +S A + RV Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +E +++ T + + + + V ++ G E G+++ Sbjct: 163 QTAQELKDRGVWLFGTDMKGTDYRRW---------------NAKGAVALVIGNEGKGISS 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 208 LLKKNCDEMLTIPMIGHVQSLNASVAASLLIYQ 240 >gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris] Length = 346 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 23/196 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N+G V R+ + + + + R+ P + +SA A V+D VFS Sbjct: 151 VLERLQDPRNLGAVLRSAHFLGVDK-VITSGRNSCPLTPVVSKASAGAMEVMD---VFST 206 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +A A ++ A T + ++ E I Q ++ G E G Sbjct: 207 DDLAGFLQAKARQGWLVAGTV---GCPRPEMS-SEIPITSCLEFLWDQPTLLVLGNEGSG 262 Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENS-----IVSSEKNVKE 182 L+ A +++ P P SLN+S A +++ E +++ Sbjct: 263 LSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQRKDFPMGRKREHLLQD 322 Query: 183 QNTPATKGELLSFLDY 198 P+ E + Sbjct: 323 PREPSATSEGPGLAQH 338 >gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y A + Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM 4541] Length = 368 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 15/154 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ V ID+ L++ Sbjct: 228 PHNLGGIMRSCAHFGIQGVILQDAGMLESGAAIRTAEGGAEHVKAIDADGFTPTLEKFRQ 287 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ ++ + + ++ G+E GL++ + Sbjct: 288 AGYTIVTTSS-------------HKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDM 334 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + SLN+S A +M+ + + V S Sbjct: 335 SLYIGGTGKVESLNVSVATGIMLSQWWSQNKVKS 368 >gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 244 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 26/172 (15%) Query: 10 NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADC 66 S + P+ IL+D N G + R + + P+ G + A +SA A Sbjct: 91 ESGETPLFILLDQLSDVRNFGAIIRTAECTGAHGVII--PKKGGAPLNGVAVKTSAGAAF 148 Query: 67 VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +V ++K+AI + + + AT + + + + Sbjct: 149 SMPIAKV-DHIKDAIYYLQGSGIQVVAATEKTDNTLY---------------DVDFKEPT 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ GRE G++ + + + P+ SLN+S A ++E + + Sbjct: 193 AIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQRL 244 >gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba] gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba] Length = 407 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +L + ++ + + N+G + R +Q+ + + KA Sbjct: 225 EQQRLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284 Query: 64 A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115 I + L EA D H A + R R N +++ + Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECM 169 G + +I G E G++ + N I P+ SLN++ A+ L+++E Sbjct: 339 --GAHNLLIIGGESHGVSEDAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELR 396 Query: 170 E 170 Sbjct: 397 R 397 >gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78] Length = 314 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G + R++ F + + R + A SSA RV Sbjct: 163 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 222 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +NL A+ A + V + + E V I+ G E GL+ Sbjct: 223 -TNLTRALE---------AYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLS 272 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +S P+ SLN A ++++E Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311 >gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5] gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName: Full=tRNA [Gm18] methyltransferase gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING Enzyme gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5] Length = 211 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G++ E + +++ I P+ + SLN+S A ++++E Sbjct: 119 KPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMY 178 Query: 179 NVKEQNT 185 + + Sbjct: 179 SRPSLSE 185 >gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium profundum 3TCK] Length = 157 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + R A+ + VI+++ + Sbjct: 10 CIGLFNPKTPENVGSVLRASGCYGVNSVFYTGTRYDL----AKQFCTDTKNVINNIPLIG 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +KE + D+ + T + E A L E + IFG E L E Sbjct: 66 -VKE-LKDIIPVGCT--------PVAVDLIEGAKPLPEYKHP-ERAFYIFGPEDGTLKKE 114 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I P +N++ AV ++++ Sbjct: 115 ITDFCRDTIYVPTKGC---MNLAAAVNVILY 142 >gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus] Length = 1500 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 23/163 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F L V + + S +A+ + V V L++ Sbjct: 1353 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLVDYLQQ 1411 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 1412 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPVNLI 1456 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + P + SLN+ + L++WE ++ Sbjct: 1457 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAGPP 1499 >gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 225 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ + + L ++ S+ I + V S Sbjct: 83 ILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGGFVGIKFILVNS 142 Query: 76 NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 L E + +F +A ++ ++I Q I+ G E G++ Sbjct: 143 LLATFEKLKKHNFWIYASALSKTAKP------------LDQIVFNQPSAIVLGSEAKGIS 190 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + S+ I P+ SLN+S A ++++ Sbjct: 191 KSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223 >gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23] gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23] Length = 268 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 16/146 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADL 84 NIG + R+ + + L + +A S + ++ + L+ + Sbjct: 137 NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDSYDTLRS-LGYQ 195 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A T ++ + VL + + I G E GL + I ++ + Sbjct: 196 TAAMALTDKSISLDDPVL-------------KQQERLAFIMGTEGDGLPQQTITNADFTV 242 Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170 P++ SLN++ A + WE + Sbjct: 243 RIPMSHQVDSLNVAAAAAVAFWELRK 268 >gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 249 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Query: 70 SVRVFSNLKEAIADLHFIYATT--AR-NRNNFKSVLAPKEAAIVLNERIFSG---QNVGI 123 + V A AD + A T AR R+ K + A ++S NVG+ Sbjct: 139 NATVRKTSAGA-ADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASLYSVDLRGNVGL 197 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + G E GL + ++ P+ SLN+S A + ++E + + + Sbjct: 198 VLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFEAVRQRLGA 249 >gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1] gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium SSC/2] Length = 246 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++G++ G E G++ + I S P+ SLN S A ++ +E + + Sbjct: 190 GSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQRL 244 >gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 258 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + RA + F ++ + L+ P + K +SA + F L Sbjct: 113 VLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAG------TAFKFPVL 166 Query: 78 K-EA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + EA + D+ +NN LA E I L F + G E G++ Sbjct: 167 RMEADELKDIIL--------KNNIPLFLAESEGGIPLTAIDFP-AKFFVAVGNEGQGIST 217 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +L + IS P+ SLN + A ++++E +N Sbjct: 218 TLKSLPHQKISIPMPGKIESLNAALAGGIIIYEWAKNR 255 >gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47] Length = 302 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 13/183 (7%) Query: 2 TPYAPQLQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 +P L+ P + L+ EN+G + R+ + L+ P+ P + Sbjct: 128 SPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSAAALGVRD-ILLGPQTISPMTRR 186 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIF 116 + A F N + DL A+ A ++ L +AI RI Sbjct: 187 VIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSSAIQSKRRI- 245 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL E + + P+ SLN+ A + ++E Sbjct: 246 ------LMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLRDADH 299 Query: 177 EKN 179 + Sbjct: 300 AND 302 >gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 19/160 (11%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR----SSSANADC 66 + +G V++L N+G + R+ F + + S +A +++ A Sbjct: 153 TPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIV----TTARHSPEATGVLAKAASGALE 208 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ V NL A+ TA N F++V E + L+ + + ++ G Sbjct: 209 LVP-VVTVQNLARAL---------TALNERGFQTVGLDSEGSEDLSNVALR-EPLALVLG 257 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL + + + SLN+S A L ++ Sbjct: 258 AEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLY 297 >gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 313 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ + P+I+ L N+G V R++ F +V P +A +A A Sbjct: 159 DAGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT- 210 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 S + A A + A A + V + + + V I+ G E Sbjct: 211 -SAGTAARTPVARA-TNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSE 268 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + P+ SLN A ++++E Sbjct: 269 GKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRR 312 >gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella formatexigens DSM 14469] Length = 245 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 20/160 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L + N+G + R + + R + +SA A +V + Sbjct: 101 ILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNL 160 Query: 76 --NLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E + F+ A + + G +G++ G E G+ Sbjct: 161 AKTIEELKQKGIWFVCA---------------DMNGTPMYDLDLKG-PIGLVIGSEGEGV 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + S P+ SLN S A +M +E + Sbjct: 205 SRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIVRQR 244 >gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] Length = 268 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 L P A+ L E +G+ V ++ G E GLT + ++ P+ P SLN++ A Sbjct: 198 LTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVATAA 256 Query: 162 LLMVWE 167 + +E Sbjct: 257 AMAFYE 262 >gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1] gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1] Length = 154 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 24/169 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---- 74 L P + +N+G R + L ++ P S++A + + A V Sbjct: 5 LFQPDIPQNLGAAVRLAACLGVP-LDVIEPCGFPLSDRAVARA--AMDYAARADVVRHAG 61 Query: 75 -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + A + TT AA + F +V ++FGRE G+ Sbjct: 62 WGDFRAASQG-RLVLFTT--------------RAAQPFQDFDFRPGDV-LLFGRESAGVP 105 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 +E A ++A + P+ SLN+ A + + E + + E Sbjct: 106 DEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE 154 >gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 252 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++++ T + A V + ++ G E G+ Sbjct: 169 LKKRGYWVFGT---------------DMAGVDYREWNAKGKAVLVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246 >gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 248 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 17/154 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L Q N+G + R L L +++P P + ++ V + Sbjct: 109 VLLLDRIQDPGNLGTLIRTADAAAL-DLIVMSPGSADPFQDKVLRASQGS-VFHLPIISQ 166 Query: 76 NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++KE + D +Y T + AI NE + S + G++ G E G+ Sbjct: 167 DIKEFVQDFDGPVYGTA-------------LDNAINFNE-VESQEKFGLLLGNEGQGVDP 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E + + ++ P+ SLN++ A +++++ Sbjct: 213 ELLEYTTQRLTIPMYGEAESLNVAIAGSILIYKL 246 >gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4] Length = 247 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71 +L N+G R + + R + + A V+ + Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 R L+E + + T A + + I+ G E G Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGGG 202 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + +I P+ SLN+S A + ++E + I + Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247 >gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R T L+ R P + V AI Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145 Query: 83 DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + A T + + V+ I+ G E G++ Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + +++ P+ SLN S A ++++E + Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243 >gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9] gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9] Length = 257 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 14/167 (8%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P G V++L D Q N+G + R ++ ++ L S KA + A Sbjct: 104 PVPAPYHGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKALRAGMGAQ 163 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 +D + L + A + R V+ E ++ L +G +V +F Sbjct: 164 FALDLHER-AVLPAVLQ------AFSGRK------VVTHLEGSVPLWSLDLTG-DVAFVF 209 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E G++ + + + P+ + SLN++ A + ++E + Sbjct: 210 GNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLFERVRQR 256 >gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 156 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA V G E+AR D + D+ +V Sbjct: 8 CIGLYNPKSPENVGSVMRAA---GCYN---VASVFYTGKRYERAR------DFITDTKKV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + E A L E + + IFG E L Sbjct: 56 HQDIPLIGIDDLKKII-----PLGCIPVAVEMVEGARPLPEYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + +I P +N++ V ++++ Sbjct: 110 GKDVLEWCEDVIYIPTTGC---MNLAATVNVVLY 140 >gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12] Length = 238 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ +++L + Q N G + R+ F + + + +E +S A Sbjct: 80 ERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPERNSVRINETVVKTSTGAI 139 Query: 66 CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + ++V +NL AI L ++Y A + + + V Sbjct: 140 EYVPIIKV-TNLSNAIEKLKKIDYWVYGAAG--------------EAELSCQEEQYPKKV 184 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +I G E GL + + +I + SLN+S A +++ E + Sbjct: 185 VLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILLSEIAK 233 >gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001] gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001] Length = 260 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +I+ T ++ ++ + + I+ G E G++ Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTAIVIGNEGKGISPGIAK 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A I+ P+ SLN S A +++++ + Sbjct: 223 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 256 >gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814] Length = 289 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 +++A + + + + +I G E GL E IA + + P++ SLN++ A + Sbjct: 223 EDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGVDSLNVAAASAVA 282 Query: 165 VWECMEN 171 W+ + Sbjct: 283 FWQLGKR 289 >gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911] Length = 249 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 25/168 (14%) Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSAN 63 + S KG +L+D Q N+G + R + +V + K S+ Sbjct: 96 EKTPASVKGSTFLLIDAVQDPGNLGTMIRTADAAGI-DAVIVGKGSADIYNPKVLRSAQG 154 Query: 64 ADCVIDSVR-----VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + +R L+E ++ +Y T N + +K Sbjct: 155 SHFHLPIIRGSLNEWMDRLEE--EEIP-VYGTALENGSPYK--------------ETHPA 197 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E G++ E +A ++ + P+ SLN++ A ++++ Sbjct: 198 GRFALLVGNEGSGVSPELLARTDKNLYIPIYGKSESLNVAVAAGILLY 245 >gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM 20098] gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM 20098] Length = 213 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 25/159 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 65 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 121 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + + I A TA A L I ++FG E + + Sbjct: 122 DLVESMPDSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 167 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN++ + ++E Sbjct: 168 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 206 >gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata E-37] Length = 274 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 20/159 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRV 73 ++L N+G + R+ F + + +++ A + + Sbjct: 129 VLLDRVTDPHNVGAILRSAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNL 188 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERW 130 + A+ + +I L A E G+ + ++ G E Sbjct: 189 ADTIT-ALQGIGYIV-------------LGLDGEAETTIEDAVEGKRDRPIALVLGAEGP 234 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GL + +A++ P F SLN+S A + ++ Sbjct: 235 GLRPKTRETVDALVKIPFAREFGSLNVSNAAAVALYAVR 273 >gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205] Length = 267 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 20/180 (11%) Query: 1 MTPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 + + + A+G V+ L Q N+G + R + L L D + Sbjct: 93 VATFKREALPKAQGIGAFVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVL 152 Query: 58 RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 R+S+ A + D + + L EA A H + AT ++ P A Sbjct: 153 RASAGAALALPHWRDPDRTGLVARLAEAAAAGHQLVAT----------LVDPDRAIPYW- 201 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + ++ G E GL E AL++ ++ P +P SLN+ A ++ E Sbjct: 202 -ELDWTRPTVLLLGNEGAGLHPELAALASHRVTIPHSPAVESLNVGVAAAPLLLERWRQQ 260 >gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales bacterium mesG1.Ag.4.2] Length = 247 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 52/192 (27%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ +++L Q N+G + R S + AD Sbjct: 88 RAIEEQRTATIVLLDQIQDPHNLGAIIRT------------------------SVAVGAD 123 Query: 66 CVI----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117 + +S + ++ + A L F ++ + +L E+ F Sbjct: 124 AIAITSSNSAEITPSVVKVSAGLAFKI--------PIIKIINMAQFEEILKEKGFWIYAS 175 Query: 118 ------------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + I+FG E G+ S+ +IS P+ SLN++ + +++ Sbjct: 176 DMEGIPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIIL 235 Query: 166 WECMENSIVSSE 177 ++ + E Sbjct: 236 FDRRRQLALGGE 247 >gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05] Length = 255 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 17/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + I D + V A +A L + + +I G E G++ Sbjct: 171 DLADVITDFQ----------DATIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN + A +M++ Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252 >gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1] Length = 549 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 15/163 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74 ++V Q N+G + R F + + + + +SA A + V Sbjct: 393 VVVAAQDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKASAGHVFAGRFLSPTEV- 451 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L+ A + + +T AP + E + ++ G E G+ Sbjct: 452 --LRAARSTASEVAPSTL---WTAAEAHAPSSWSHRQLEDVAWPHRRVLVLGHETRGVPR 506 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV-----WECMENS 172 + + ++P SL+++ A ++ +EC + S Sbjct: 507 DLQPFCQP-VHIAIHPGVESLSVAAAAAILCDRVFAFECAKQS 548 >gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9] gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium profundum SS9] Length = 157 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + R A+ + VI+++ + Sbjct: 10 CIGLFNPKTPENVGSVLRASGCYGVNSVFYTGTRYDL----AKQFCTDTKNVINNIPLIG 65 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +KE + D+ + T + E A L E + IFG E L E Sbjct: 66 -VKE-LKDIIPVGCT--------PIAVDLIEGAKPLPEYKHP-ERAFYIFGPEDGTLKKE 114 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I P +N++ AV ++++ Sbjct: 115 ITDFCRDTIYVPTKGC---MNLAAAVNVILY 142 >gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 269 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 12/86 (13%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIALS 140 R R+ + A I L G+ +FG E GL A + Sbjct: 171 RERDTAAVLDTISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATAARA 230 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 + + P++ SLN++ A + ++ Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256 >gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans DSM 9485] Length = 252 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 10/150 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +N+G + R + + R + ++S+ A + V + +NL + I Sbjct: 107 QDPQNLGTLLRTAEAVGCHGIIIPGRRAAEITPAVVNASSGAVEHL-RVAMVTNLSQTIE 165 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L N V ++ + + +G++ G E G++ + Sbjct: 166 ELQH---------NGIWVVGLEQDETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDF 216 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ P+ SLN + A + ++ Sbjct: 217 LVRLPIVGQIGSLNAAVAGSIAIYHAWRQR 246 >gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1] gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1] Length = 153 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 17/161 (10%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71 G I L P + N G + R L + L+ P S++A + ++ Sbjct: 5 GFRIALFQPDIPGNTGAILRLSACLGLA-VDLIEPAGFDLSDRALKRA--GMDYLELAAL 61 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII-FGRERW 130 R ++ + D + + R++ + +L A + + FS ++ I+ FGRE Sbjct: 62 RRHASWE----DFN-----SWRHQEARRIILF--TTAGTVPYQCFSFRDGDILMFGRESS 110 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + N + P+ SLN++ A + E + Sbjct: 111 GVPDHVHNAVNYRLVIPMKEGTRSLNVAMAAAMACGEAVRQ 151 >gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 289 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 18/168 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L N+ I L NIG + R+ + + + + ++ S Sbjct: 127 ALPNAHPRIAI-LEHIVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVF 185 Query: 67 VIDS----VRVFSNLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQN 120 + +++ E I+ LH + TA R+N + P ++ Sbjct: 186 QVPWTYIDAKIWQT--EGISLLHRLGYQTAAMALRHNTIRIDDP---------QLVKIDK 234 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + +I G E GL I S+ I P+ SLN++ A L WE Sbjct: 235 LAVILGSEGPGLEERTIMQSDFSIKIPMATGVDSLNVAAASALAFWEL 282 >gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152] gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152] Length = 248 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + + +SA A + +V ++K+A+ Sbjct: 110 NFGAIIRTAECTGVNGIIIQKNGSAPVNAETIKTSAGAAFKMPICKV-DHIKDALFILQA 168 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +++ + AT + + + + Q + II G E G+ + + + Sbjct: 169 SNIKTVAATEKTDSSIY---------------DVNFNQPIAIIMGSEHRGVNPSVLKMVD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P++ SLN+S A + ++E + Sbjct: 214 YKAKLPLSGNIESLNVSVACGVFLYETVRQR 244 >gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv. syringae 642] gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7] Length = 166 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 E ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165 >gi|297520579|ref|ZP_06938965.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50] Length = 86 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 123 IIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FG E GL + + I P+ P S+N+S AV ++V+E Sbjct: 26 LMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 76 >gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii NGR234] gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii NGR234] Length = 153 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVI 68 I L P + N G + R L + ++ P S++ + A + Sbjct: 1 MNELRIALYQPDIPGNTGTILRLAACLGLA-VDIIEPAGFDLSDRNLKRAGMDYIAAVTL 59 Query: 69 DSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + A + + A+T + + ++FG Sbjct: 60 TRHVNWERFETWRAESGRRLVLASTKAAEPYTRFEFRADDI---------------LLFG 104 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 RE G+ + ++A I P+ P SLNI+ A ++V E + + Sbjct: 105 RESAGVPDHVHDRADARILIPMAPGQRSLNIAMASAMIVGEAIRQTGA 152 >gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio salmonicida LFI1238] Length = 247 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 16/169 (9%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSAN 63 + + + P+ +L N+G R + +V P+D S A + Sbjct: 88 DIMDKTENPLFLVLDGVTDPHNLGACLRNADGAGVAA-VIV-PKDKSASMTATVSKVACG 145 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A ++ VRV + A V EA + + +G + I Sbjct: 146 AAEMVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATKDVFQSKLTG-PLAI 194 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+ + +I P+ SLN+S A + ++E + Sbjct: 195 VMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVRQR 243 >gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus 11B] Length = 163 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 19/137 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 + V+P++ N G R +L LV P S+ + +V V N+ Sbjct: 5 VFVEPRIPPNTGNAIRLAAATGC-ELHLVGPLAFDMSDARLRRAGLDYHEFATVVVHPNM 63 Query: 78 KEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 A + I+A T R + V ++FG ER GL + Sbjct: 64 DAAWEVLASGRIFAFTGRAERPYTDVEYRD--------------GDALMFGTERTGLPDS 109 Query: 136 EIA--LSNAIISFPVNP 150 + + P+ P Sbjct: 110 ILTDPRITERVRIPMLP 126 >gi|332292383|ref|YP_004430992.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332170469|gb|AEE19724.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 153 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + + G E GLTNE I S+ +I FP SLN+S A ++++ Sbjct: 90 AETLETFHHPRRCVYLLGAEDHGLTNEAIEKSHFLIKFPST---LSLNVSVAGSIVLY 144 >gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004] Length = 339 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 17/150 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEA-I 81 N+G + R+ +F + + L + R++ A+ + ID+ + L + Sbjct: 201 PHNLGAIMRSCAHFGVQGVILQDVAMLESGAAVRTAEGGAEHIKGIDADGFTTTLNQFRC 260 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A + TT+ ++ + + + + ++ G+E GL++ + Sbjct: 261 AGYTIV--TTSSHKGST------------TLAKADLPEKMVLVLGQESDGLSDSIWEDGD 306 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S SLN+S A +M+ E Sbjct: 307 IRLSIGGTGRIESLNVSVATGIMLAEWWRQ 336 >gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N] Length = 261 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 17/152 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A P+++L+ N+G V R+ F R V + + + + A ++ Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126 NL E + L + V EAA+ L E +G+ V ++ G Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLEGTAGRPVALVLG 216 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 E GL + + ++ P F SLN+S Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGEFGSLNVS 248 >gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 251 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++G+I G E G++ + I S P+ SLN S A ++ +E + I Sbjct: 189 GSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRIAKGA 247 >gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp. lactis AD011] Length = 169 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 25/186 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + P + P++ N G R T L LV P + Sbjct: 1 MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 59 Query: 61 SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + D V N ++ + + I A TA A L + Sbjct: 60 A--GLDYHDMAHVVLHPNFEDLVESMPNSRIIAFTA--------------HATKLYTEVE 103 Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FG E + + + +A + + P+ P SLN++ + ++E Sbjct: 104 YKPTDILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 163 Query: 173 IVSSEK 178 + Sbjct: 164 GFDGGQ 169 >gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3] gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3] Length = 202 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 39/195 (20%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P++Q + I LV+P+ N+G + RA + + + + K +A Sbjct: 13 AKPEVQQA---VYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYTGKRYEYAAR 61 Query: 64 A-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + ++L +A+ +D + + A L Sbjct: 62 GPQQYNADTQSAAERIPLTGVASLLDALPSDTKLVC-------------VDLVLGATPLP 108 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + +FG E + E I ++A++ P +N++ +V +++++ + + Sbjct: 109 EFVHP-EKAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNVLLYDRLAKA 164 Query: 173 IVSSEKNVKEQNTPA 187 E + A Sbjct: 165 HREQVSAQTEFDGDA 179 >gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio parahaemolyticus AQ3810] Length = 128 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSG----------QNVGIIFGRERWGLTNEEIALSNA 142 R N +++ +E I + I+ G E G+ + Sbjct: 35 RVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDD 94 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +I P+ SLN+S A + ++E + + + Sbjct: 95 LIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 128 >gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15] Length = 242 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 30/175 (17%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P P + I L + Q N+G + R + F + L++P P + K +S Sbjct: 89 PERPA-EPVLGEKAIYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPFNPKVVRAS 146 Query: 62 ANA--DCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A +++ ++L + ++A L + +R + Sbjct: 147 MGALFHVPLETDVALTSLPDRYQSLACLDLNGG-SMASRGFREHDC-------------- 191 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170 +FG E G+ E + A+ S SLN++ AV + +E M Sbjct: 192 ------YLFGNEARGVPREALDQLKAVPYSIQGQGQIESLNLASAVNMCTYELMR 240 >gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium PHSC20C1] Length = 345 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 22/168 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRV- 73 + L N+G + R++ F Q +V P R + A +SA A + R Sbjct: 193 VALDGITDPRNLGAIVRSVAAFG-GQGVIV-PQRRSVGMTASAWKTSAGA-----AARTP 245 Query: 74 ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +NL + I + + R F L + + L + + V I+ G E Sbjct: 246 VAMANNLTQMIKEY--------KKRGVFVLGLD-GDGDVSLPSLPLAKEPVLIVVGSEGK 296 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 GL+ +AI+S P++ SLN A + ++E + + +K Sbjct: 297 GLSRLVTENCDAIVSIPISASTESLNAGIAASVTLYEISKLRSAARKK 344 >gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04] Length = 218 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + FG E GL+ E ++ + P++ S NIS AV ++++ Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSL 176 >gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi] gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi] Length = 218 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + FG E GL+ E ++ + P++ S NIS AV ++++ Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSL 176 >gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 227 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 17/151 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R+ F ++ ++ + W A + VR +++ Sbjct: 92 QHDLNIGSIVRSANAFLAAEVHIIG-KRRWNRRGAMVT-----DRYQHVRHHEDVE---- 141 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSN 141 TA R + V+A + R + ++FG+E GL+ E +A ++ Sbjct: 142 ------TFTAWARGSGLPVIAIDNVEGSVPVNRAELPEACVLLFGQEGPGLSPEALAAAS 195 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A++ S+N + A ++++E Sbjct: 196 AVVEITQYGSTRSINAASAAAVVMYEWCRRW 226 >gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 17/149 (11%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKE 79 PQ G N+G + R+ L P+ W E R + + V + + Sbjct: 36 PQHGANLGTLLRSCDAVGA---CLAVPKWSWVPEALRR----GNTLPGKACVHWVHDPEG 88 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 +A R + E A L + + Q + G ER G+ E + L Sbjct: 89 WLAQ--------RRAEGVRVVGVELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDL 140 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ P+ SLN++ A L++++ Sbjct: 141 LDEVVEIPMIGAGASLNVAVAGSLVLYKL 169 >gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 307 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 16/151 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAI 81 N+G + R+ F + + R + A +SA A + +V +NL E + Sbjct: 169 PHNLGAIIRSAAAFGADGVIIPERRSASLTASAWKASAGAAARLRVAKV-TNLNRGLERL 227 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A F+ A A + + + ++ G E GL+ + Sbjct: 228 AKAGFVIAGLAGEAD------------TDIAGIPGVNGPLVLVVGSEGAGLSRMVREHCD 275 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++S P+ SLN S A + ++E Sbjct: 276 VLVSIPITSEVESLNASVATAIALYEVSRAR 306 >gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 318 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 17/174 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 G V+ L + N+G V R++ F + + R + A +SA Sbjct: 159 QAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTA 218 Query: 66 CVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + +LK+ + + + Sbjct: 219 ARLPVAKATNMVRSLKQLQQAGYQVVGL--------------DAGGDHTLDTYDGTTPTV 264 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E GL+ + I+S P+ SLN S A +++ E + Sbjct: 265 IVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318 >gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018] gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 321 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 18/152 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSVRV 73 N G + R + + V+ + K S+A + D D + Sbjct: 165 PGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAGSLFHLPVVTMSEDDWFDWTKS 224 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ AD IY T + +F ++L P + LN+ G N I+FG E GL Sbjct: 225 LK-IRVIAAD---IYGTENKKPKSFANLLKP--LSDDLNKGYNEGSN-AILFGNEARGLP 277 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E + + I P+ S+N++ + +M+ Sbjct: 278 EEILNRVDEISVIPIYGKAESMNLATSAAVML 309 >gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 249 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N+G + R + + L + + +SA A I +V ++LK+A+ Sbjct: 109 NLGAILRTAECTGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKV-NHLKDALFYLKS 167 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + T E + + + ++ G E G+ + +++ Sbjct: 168 SGVEIVAVT---------------EKTNTSVYELELNKPLALLMGGEGEGIQPSILKMAD 212 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A ++++EC+ Sbjct: 213 VKGKLPMLGSIESLNVSVACGVILYECLRQQ 243 >gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC BAA-798] Length = 267 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + + N+ GPV++L N+G + R+ + L + KA +SA Sbjct: 105 HPREGVNANAGPVLVLDRVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAG 164 Query: 64 ADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + + + + E + + +A + A L + Sbjct: 165 ALFAVSFAVLPWEEIHEVLHTVPKRFAA----------YYSDSSQAYYLADLC---PPCA 211 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 I+ G E GL+++ ++LS + P+ SLN + A ++++E ++ + Sbjct: 212 ILVGSEASGLSHQALSLSTHNLWIPMQNNIESLNAAVAGSILLFESRRQMLIREGR 267 >gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 270 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P L A+ V++L D N+G + R++ LV PR P +A S Sbjct: 109 PSVASLLADARR-VVVLEDVVDPTNVGAIFRSVGAIG-ADAVLVTPRCTDPFYRRAIRVS 166 Query: 62 ANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R + + A+AD F A A ++ ++ +E++ Sbjct: 167 MGTVLQVPWTRTGEWPETRAALADAGFHVAALA----LTPDAVSIRDFPAEDHEKL---- 218 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 I+ G E GL+ E I ++ ++ P+ SLN++ Sbjct: 219 --VIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDSLNVAA 256 >gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1] gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1] Length = 156 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA + VN G E+AR D V D+ RV Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + E A L E + + IFG E L Sbjct: 56 HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPEYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + E I P +N++ V ++++ Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLY 140 >gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402] Length = 262 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + NIG + R +F + ++ L + S KA+ ++ + R ++L + Sbjct: 128 RTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--ADLGS-LP 184 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN- 141 DL I T +++ F + + ++ G E G++ E + + Sbjct: 185 DLPLIVLETG---------------GTDISKFDFPKKGI-VVIGSEELGVSPEAVKKAQG 228 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +I+ P+ + S+N+S A + + + E Sbjct: 229 RVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262 >gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 310 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 216 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +NL + D + V+ A + + + ++ G E Sbjct: 217 VAR-ATNLTRTLKDWA----------DRGLRVIGLDAAGETAVDDLDGSDPLVVVVGSEG 265 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S A +++ E Sbjct: 266 KGLSRLVRQNCDEVVSIPMAGRAESLNASVAAGVVLAEIARQR 308 >gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris aestuarii DSM 271] Length = 243 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 15/170 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + ++ ++IL Q NIG + R+ + LV + + +SA A Sbjct: 87 EKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVAADAVVLVEGKGSPVNATVHKASAGA-- 144 Query: 67 VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + +RV +LK+ + L R+ ++A A I + +I Sbjct: 145 -LPHMRVCKVKSLKKCLELL----------RSKKFQIVAADMHAERNYTDIDFTRPSALI 193 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 G E GL + +AI+ P+ SLN+S ++++E M + Sbjct: 194 MGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMRQRLT 243 >gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC BAA-613] Length = 270 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 NVG + G E GLT E +L++ ++ P+ SLN + A ++++E Sbjct: 208 NVGFLIGNEANGLTEETTSLADCLVKIPMEGKVESLNAAIAASVLMFETARQR 260 >gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1] gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1] Length = 255 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R +++P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDG-VILSPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D A + S+L + E++ + +I G E G++ Sbjct: 171 DLADVITDFQ------AAAIPVYASMLDRSAKQLPDFEKVPQ---LALIIGNEAHGVSPT 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN + A +M++ Sbjct: 222 IASLADEKLYIPIKGQAESLNAAVAAGIMIY 252 >gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 257 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N G + RA F + + + K ++ + + VR + L + +A Sbjct: 116 QDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGA-LPDLLA 174 Query: 83 DLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 L T A S P+E A+ ++ G E GL Sbjct: 175 QLQANGFTCYGADLEGTPASRWQPREPAV-------------LVLGSEAHGLQPAVRERL 221 Query: 141 NAIISFPVNP---LFPSLNISQAVLLMVWECM 169 A ++ P +P SLN++ A ++++E + Sbjct: 222 TARVTVPGSPRRQATESLNVAMAATVLLYEWL 253 >gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 124 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 70 GRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 123 >gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens] Length = 246 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 13/187 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++N + ++L N + R M + P + + + A A Sbjct: 61 AVKNRTRSIAVVLEGITNEGNEQAIYRTMDALGFQTAHRI-PSPLYRLKTCGRTDAGAMK 119 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ID + + + +E I+ L +K + E + ++ G Sbjct: 120 WID-IESWKSTEECISQLKSC---------GYKILATSSENKTKTLDSFDFSNKTAVVLG 169 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 E+ G++ E + L + + + S N+S A ++++ ++ I + T Sbjct: 170 SEQEGISKEAMNLVDNVFRISMVGFVESYNVSVAAAIILYHIYQDRIRKLGYH--GDLTE 227 Query: 187 ATKGELL 193 A + +LL Sbjct: 228 AEQDDLL 234 >gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus indolifex HEL-45] Length = 258 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 18/147 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82 N+G + R+ + V + + + + A ++ NL +AI Sbjct: 119 PHNVGAILRSAEVLGAS---AVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIR 175 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLTNEEIAL 139 L VL A E G+ V ++ G E GL + Sbjct: 176 ALQ----------GMGYLVLGLDGEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRET 225 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 +A++ F SLN+S A + ++ Sbjct: 226 VDALVRIDAAGGFGSLNVSNAAAIALY 252 >gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 166 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + + A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 E ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKTDPASD 165 >gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus parauberis NCFD 2020] Length = 249 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 19/168 (11%) Query: 10 NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ P+I IL N G + R + + + R + +S A + Sbjct: 97 DAEDNPLILILDGITDPHNFGSILRTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHM 156 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + L + ++I+ T + SG + +I Sbjct: 157 PIARVTNLSQTLDKLKEKGYWIFGT--------------DMDGTPSPKWNTSG-KLALII 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+++ + +I+ P++ SLN A ++++E N + Sbjct: 202 GSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVYRNKL 249 >gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 300 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 Q FG E GL+ EE+ ++ ++ PV+ SLN+ A + ++ Sbjct: 244 QPTLWFFGNEAQGLSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYASARAQ 297 >gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 216 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R + +V+ + S KA ++ V F + A+ Sbjct: 57 GNILAVCRTTEALGIGCASIVSSKG--LSFKASGRTSGGALKWQHVEQFETSERALR--- 111 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A + VL + ++FG ER G+++E AL + + Sbjct: 112 --VA-----KAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEARALRDGAVY 164 Query: 146 FPVNPLFPSLNISQAVLLM 164 P+ SLNIS A L+ Sbjct: 165 IPMFGFTESLNISVAAALV 183 >gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38] gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38] Length = 264 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R N+ + + NP+ + SS +E I Sbjct: 124 EKPGNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIA--VGTTEEVI- 180 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A + N S+ + ++ G E GL+ + S Sbjct: 181 ---------AYLKANNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGLSEKWRIESTK 231 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ S+N+S A ++++E Sbjct: 232 NIIIPMQGEIDSMNVSVAAAILLFEAKRQR 261 >gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + L +E SA A + R+ + Sbjct: 119 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVTRIGN------- 171 Query: 83 DLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 A T R + F + A ++ + ++ G E G++ L Sbjct: 172 -----IAQTIRALKEDGFW-IAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELC 225 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + P+ SLN S A ++++E M Sbjct: 226 DFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKDAVP 264 >gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84] gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84] Length = 276 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 12/158 (7%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + V++ +NIG + R F + L KA S + + Sbjct: 124 PKRPLVLVGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPY 183 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R F D+ + T R L+P+ + ++ ++ G E Sbjct: 184 RREF-------RDVDLL--TALAERGFAIWSLSPR--GKTDIRAVPPTDHIALVVGTEGE 232 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL E ++ + + P P SLN++ A + ++E Sbjct: 233 GLPQEILSTFGS-VRIPQAPGLDSLNVATASGIALFEM 269 >gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 274 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E WGL +E+ AL++A++ P+ SLN++ A + ++ Sbjct: 219 AAPTAWVFGNEAWGLRDEDRALADAVVRVPIRGRAESLNLATAATVCLYASARAQ 273 >gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 249 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + +SA A + RV Sbjct: 103 ILDELADPHNLGSIMRTADAAGVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLV 162 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 KE A +++ T + R + V ++ G E G++ Sbjct: 163 QTAKELKARGVWLFGT---------------DMQGTDYRRWDAQGAVAVVIGNEGKGISP 207 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ + Sbjct: 208 LLKKTCDEMLTIPMVGQVQSLNASVAASLLIYQGFSSR 245 >gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH] Length = 209 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 71/200 (35%), Gaps = 27/200 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R N+ +L + R + + +++E ++ Sbjct: 33 SHNLSAIVRTCDAVNVGKLYYRHQRKVRLNNDITMGAHK----WIFHEYVEDIEEFYKNI 88 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + ++ V+ + V + + I+ G E G ++ I ++ + Sbjct: 89 ---------KKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGASDISIKYADKKV 139 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204 P+ + SLN+S A ++++E +TP+ ++ +E +L+ Sbjct: 140 IIPMYGMSQSLNVSVANAVILYEAQRQRAAK-----GMYDTPSLPEDV------IEKTLK 188 Query: 205 ERGYFRPVEKKKKMLDDLYS 224 + Y +EK+ L + Sbjct: 189 KWAYDDIIEKE---LRRVRH 205 >gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium tuberculosis H37Rv] gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] Length = 288 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 Query: 160 AVLLMVWE 167 A L +E Sbjct: 269 AAALAFYE 276 >gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus rhamnosus Lc 705] Length = 260 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + N+G + R + + + R + S A + RV +NL + I Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +I+ T ++ ++ + + ++ G E G++ Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTALVIGNEGKGISPGIAK 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +A I+ P+ SLN S A +++++ + Sbjct: 223 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 256 >gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 290 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%) Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 +Y T +R P+ V+ ++FG E GLT E + ++ I+S Sbjct: 209 VYGTDSRQ---------PESLTDVIAAPETLAGAKAVLFGNEARGLTKEVLERTDRIVSI 259 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P+ SLN+ + +M+ +S V Sbjct: 260 PLYGKAESLNLGTSSAVMLLSLAMSSHVER 289 >gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter diazotrophicus PAl 5] Length = 321 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 47/194 (24%) Query: 1 MTPYAPQLQ----NSAKGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRL 45 + P L GP+++L N+G + R+ M Sbjct: 155 LADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME--------- 205 Query: 46 VNPRDGWPSEKARS-SSANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKS 100 R+ A + +++ A ++ VRV + L +A+ L F + Sbjct: 206 ---RNAPDETGALAKAASGALEIVPLVRVVNLARTL-DALKSLDFWVVGL---------- 251 Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 +L+ F + V ++ G E GL + I + SLN+S A Sbjct: 252 ----DAGGGILDGTSFGQRRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNA 307 Query: 161 VLLMVWECMENSIV 174 + ++E + Sbjct: 308 AAVALYELVRRGKA 321 >gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp. 3_1_27] Length = 234 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y A + Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 IILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 246 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R F + L + K +S + + V +F Sbjct: 98 TVVLDGVRDPGNLGTIIRLCDWFGIENLICSLDTVDCYNPKVVQASMGS---LTRVEIF- 153 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +DL + + V + + + + I+ G E G++ E Sbjct: 154 -----YSDLVNVLGA-----HKNIPVFGTMLNGENIYSKKKPDKAL-IVMGNEANGISEE 202 Query: 136 EIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMENSIVSS 176 AL + I+ P SLN++ A +++ E +SI+ Sbjct: 203 IQALISNKITIPQFGEIQETESLNVATATSIILSEFRRSSIIEK 246 >gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length = 279 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 15/164 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 P++ + + V+ N G + R + L + K +SA + Sbjct: 115 PEVLARDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSL 174 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 V+ V L +A+ TA + E + + I +G V Sbjct: 175 FHVPVVRGREVVPTL-DALHAAGLTLLATAADG----------EVVLDEADEILAG-PVA 222 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL A ++ + P++ SLN++ A + ++ Sbjct: 223 WLFGNEAHGLDPAVAARADHRVRIPIHGRAESLNLAAAAAICLY 266 >gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 234 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L ++Y A + Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 IILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 272 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 13/156 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + +N+G + R + + L +E SA A + R+ + Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 180 Query: 83 DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A T R + + + + + ++ G E G++ L + Sbjct: 181 -----IAQTMRALKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCD 235 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + P+ SLN S A ++++E + Sbjct: 236 FTVRLPMVGKINSLNASVAGAILMYEAQRQRRAKAA 271 >gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus 214-1] gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus crispatus CTV-05] Length = 251 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++++ T A E G+ V ++ G E G+ Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246 >gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus MV-3A-US] Length = 251 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++++ T A E G+ V ++ G E G+ Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246 >gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 276 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G R+ + LV PR P ++ S + R+ + L+E Sbjct: 141 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGLRELQD 199 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSN 141 D + A LA + A+ L+E + + ++ G E G+T + + Sbjct: 200 DGFVVVA------------LALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACD 247 Query: 142 AIISFPVNPLFPSLNI 157 ++ P+ SLN+ Sbjct: 248 VVVKIPMAGGVDSLNV 263 >gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32] gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01] gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222] gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32] Length = 163 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRV- 73 + LV+P+ EN+G V RA + + R AR + ++ + Sbjct: 15 CVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDH----ARQFHTDTKEKHLELPLIG 70 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +LK+ I + E A L + IFG E L Sbjct: 71 VEDLKDIIPVGCV-------------PIAVDLIEGAKPLPDYKHP-PRAFYIFGPEDGTL 116 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E I P N +N++ AV ++++ Sbjct: 117 KKEITDFCRETIYVPTNGC---MNLAAAVNVILY 147 >gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys] Length = 1621 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TA++ + + P + ++ G ER G+ I Sbjct: 1533 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621 >gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251 [Candidatus Pelagibacter sp. IMCC9063] Length = 235 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R F ++ L ++ + S S++ A I ++V SNL AI +L Sbjct: 100 NIGSIIRNCAAFEISHL-IIEKKINIDSHYLFKSASGATEHIQFIKV-SNLNTAIQEL-- 155 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 RN F V + A + I G I+ G E G+ N S+ Sbjct: 156 -------KRNGFF-VFSAALDAKQTMKEISFGSKNCIVLGSEGEGVRNLISKNSDEHFKI 207 Query: 147 PVNPLFPSLNISQAVLLMVWECMENS 172 + SLN+S ++ +N+ Sbjct: 208 EHSSNIDSLNVSNTSAIIFNHLYQNT 233 >gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus] Length = 325 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 13/179 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y LQ+ +G +++ N+G +AR F + L + N D ++ + S + Sbjct: 158 YQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFGVKALVIAN-LDYIKDKEFQCLSVS 216 Query: 64 ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A+ I+ ++V L++ + + +N S++ ++ A +N + Sbjct: 217 AERWINILQVKPHELQKYLFE----------KKNAGWSLIGAEQTANSINLLQTKFEKKT 266 Query: 123 I-IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 I + G E+ G+ I L + + P + SLN+ + +W+ + V Sbjct: 267 ILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIWQYASQHTLRQFSQV 325 >gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10] Length = 274 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 19/163 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------ 68 +++L + N+G + R+ + L+ P P +A S I Sbjct: 123 IVVLENVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFD 181 Query: 69 -DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V+ N +E + ++ F A A + ++ ++ E A+ E++ +I G Sbjct: 182 GKKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGT 231 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL + I S+ ++ P++ SLN++ A + W+ Sbjct: 232 EGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 274 >gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662] Length = 257 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E GLT+ AL++ I P+ SLN + A L+++E Sbjct: 203 AFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 252 >gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC 27755] Length = 252 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 I+L D + N+G + R + + R + +SA A +V + Sbjct: 107 ILLDDIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNL 166 Query: 76 -----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKE L F+ A + ++ +G++ G E Sbjct: 167 TKTMKELKE--KGLWFVCA----------------DMGGESMYKLNLTGPIGLVIGNEGE 208 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G++ + + S P+ SLN S A ++ +E + + Sbjct: 209 GVSRLVKETCDFVASIPMKGDIDSLNASVATGVLAYEIVRQRL 251 >gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 Length = 184 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 37 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 95 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TA++ + + P + ++ G ER G+ I Sbjct: 96 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 140 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 141 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 184 >gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens] gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR RNA-binding protein 1; AltName: Full=TAR RNA-binding protein of 185 kDa; Short=TRP-185 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens] gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens] gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens] gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct] gi|1586092|prf||2203267A TRP-185 protein Length = 1621 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L V ++ + S +A+ + V V L++ Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TA++ + + P + ++ G ER G+ I Sbjct: 1533 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621 >gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup] Length = 276 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 23/157 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV 73 VI++ N+G + R+ L L+ P E +++ A +I + V Sbjct: 129 VIVMDQITDPHNVGAIMRSAVA--LKAKALITTCRHSPHESGVLAKAASGALEMIHYITV 186 Query: 74 FSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL EA+ +LH ++ + K + E +G + ++ G E GL Sbjct: 187 -RNLAEALQELHQTGFSSFGLDSEGDKPL-----------ETALTGNKIALVLGAEGKGL 234 Query: 133 ---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 T E + A+ + SLN+S A + ++ Sbjct: 235 RKKTRETV--C-ALTRLDMPGNIKSLNVSNAATIALY 268 >gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis L2-32] gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis L2-32] Length = 227 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 79 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 135 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + + I A TA A L I ++FG E + + Sbjct: 136 DLVESMPDSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 181 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + ++E + K Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 227 >gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40] gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 177 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 31/178 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L++P+ N+G + RA F L + + ++ K Sbjct: 11 LINPKSPTNVGAIMRAAGCFG-ANYVLYT----------------GQRYSKAAKFHTDTK 53 Query: 79 EA-----IADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +A + + A +A K V V ++ +FG E + Sbjct: 54 QASQHIPLRGVDNLATAVSA----GVKIVCVDLIEGAVALPDFTHPEHALYVFGPEDGTI 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190 I ++A + P LN++ V +++++ + ++S ++ A++ Sbjct: 110 NQSIIDAADAAVYIPTKGC---LNLAATVNVVLYD-RQAKNLTSLSANGDELIRASRD 163 >gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14] gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14] Length = 266 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +L + + A T + + VL + + I+ G Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL+ E IA ++ ++ P++ SLN++ A + W+ Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266 >gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp. K] Length = 256 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 23/187 (12%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +++L + N+G + R+ + + R + +SA A Sbjct: 87 ARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGA 146 Query: 65 ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 V + + LKEA SV + L E G Sbjct: 147 VERCPVARVTNVAKTLERLKEA----------------GIWSVALAADGERPLGEADLKG 190 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E G+ + P++ SL++S + + ++E + K Sbjct: 191 -PTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSK 249 Query: 179 NVKEQNT 185 + E Sbjct: 250 SAVEMRP 256 >gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. SK209-2-6] Length = 262 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P +IL+ N+G + R+ + ++ R + + + + A ++ Sbjct: 109 AEVPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 165 Query: 71 VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL + I +L N VL A E G+ V ++ Sbjct: 166 QPYLRMRNLADTITELQ----------NMGFVVLGLDGEAEDTIESCLQGRKDLPVALVL 215 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ + F SLN+S A + ++ Sbjct: 216 GAEGPGLRQKTKETVDHLVKIDASGGFGSLNVSNAAAIALY 256 >gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171 str. F0337] Length = 278 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83 N+G R+ + LV PR P ++ S + R+ + + E + Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWPAMDE-LHG 203 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 F A A + + +A E A + V ++ G E GL++ IA ++ + Sbjct: 204 QGFTVAALALSDTS----VALDEFAA-STACTGADSRVAVVLGTEGDGLSHRTIAAADEV 258 Query: 144 ISFPVNPLFPSLNIS 158 + P+ SLN++ Sbjct: 259 VRIPMAGGVDSLNVA 273 >gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116] Length = 175 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 22/150 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L +P+ N+G V RA A N + + ++ K Sbjct: 11 LYNPKDPTNVGAVMRAA---GCYD--------------ATQVRYNGTRYNRAAKFRTDTK 53 Query: 79 EAIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + TA + K V +N IFG E L E Sbjct: 54 NMHERIDLVEMDDLTAHLAEDVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEV 113 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ ++ P N +N++ V ++++ Sbjct: 114 VDKADHVVYVPTNGC---MNLAATVNVVLY 140 >gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210] gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium bovis AF2122/97] gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C] gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str. Haarlem] gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85] gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054] gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503] gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis 94_M4241A] gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 288 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 Query: 160 AVLLMVWE 167 A L +E Sbjct: 269 AAALAFYE 276 >gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 131 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 18/142 (12%) Query: 33 RAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAIADLHFIYA 89 R+ +F + +V S A ++ A+ V I L + + I + Sbjct: 2 RSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVS 60 Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149 T++ N PK + + G+ER GL++ I+ ++ ++ Sbjct: 61 TSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSADLSVAIDGT 106 Query: 150 PLFPSLNISQAVLLMVWECMEN 171 SLN+S A +++ E Sbjct: 107 GNVESLNVSVATGVLLAEWWRQ 128 >gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 266 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +L + + A T + + VL + + I+ G Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL+ E IA ++ ++ P++ SLN++ A + W+ Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266 >gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella clarridgeiae 73] Length = 282 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G E+ GL++ N + P SLN++ A LM++E + Sbjct: 219 GPIILLMGNEQKGLSDVLANHCNNLARIPQCGYADSLNLAVATALMLYEIRRPYL 273 >gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 154 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 18/144 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + EN+G++ R+ N + + + R + + A + ++ A Sbjct: 19 KTPENLGVLWRSAQNMGASFIYTIGNRYSKQACDTHK-AVGAMPYFH----YETFEDFYA 73 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + + E+A L E + + G E GL+N+ I ++ Sbjct: 74 HL---------PKGAMLVGVELNESAEHL-EDFKHPRRCVYLLGAEDHGLSNQAIDKAHY 123 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ F SLN+S A ++++ Sbjct: 124 LVKFKST---LSLNVSVAGSIVMY 144 >gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium cellulosolvens 6] Length = 305 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---SNLKE 79 + N+G + R + + R + +SA A +V + + E Sbjct: 167 EDPHNLGAIIRTANLAGAHGVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDE 226 Query: 80 AIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + F+ A R + P +G++ G E G++ Sbjct: 227 LKKKGMWFVCAAMDGTRMYDLDLKGP----------------IGLVIGNEGEGVSRLVRE 270 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + S P+ SLN S A ++ +E + Sbjct: 271 KCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304 >gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli OP50] Length = 103 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E G+ + +IS P+ SLN+S A + ++E + Sbjct: 49 GRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 102 >gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus anaerobius 653-L] Length = 260 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 66/160 (41%), Gaps = 24/160 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVF 74 ++++ Q N+G + R L + + + + K S+ + +D + + Sbjct: 117 IVVVDRVQDPGNMGTIIRTADAAGF-DLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLD 175 Query: 75 SNLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +EA + D+ + S L + +++ +N ++ G E Sbjct: 176 N--EEARDLLKVNDIDIV-----------SSYLDTENY----YDKVDYKENTALVVGNEA 218 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G+++ I S+ ++ P+ SLN++ + L++++ + Sbjct: 219 NGISDFWIRQSDVLVKIPMFGKAESLNVAVSSALLMYKIL 258 >gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759] Length = 301 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 12/156 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L + N+G + R+ + + L ++ S I + Sbjct: 156 VLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMT 215 Query: 78 K--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + F A + RN+ + P+ + + + +I G E GL Sbjct: 216 AGMDILHAMGFKTA-SMALRNDTIDINDPR---------LKEVEKLAVILGTEGEGLKTS 265 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I S+ I P+ SLN++ A + WE + Sbjct: 266 TIYASDFTIKIPMFHGVDSLNVATASAVAFWELGKR 301 >gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + P ++L+ +N G + R+ + + + +SA A Sbjct: 86 EARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV + ++E +++A A + K V E + Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PTC 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ ++ +I P S N S A ++ +E ++ + E Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis SJ95] Length = 240 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 22/162 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSAN---ADCVIDSV 71 +IL Q N G + R + + + P+D S+ +I Sbjct: 93 VILDQIQDPHNFGAIVRTSVAAGVDAIII--PKDNAVEVTPVVIKVSSGQIFKIPIIKVT 150 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + ++ + ++Y K I + ++FG E G Sbjct: 151 NLSNTIETLKKENVWVYG----ADVEGKPYY-----------EIDWQGKICLVFGNEGNG 195 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + ++S P+ SLN+S + ++++E + I Sbjct: 196 IRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQRI 237 >gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1] gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5] gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5] gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1] Length = 228 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 42/178 (23%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLT----QLRLVNPRDGWPSE 55 + P L++ I +L N+G + R++ L + P E Sbjct: 73 LPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVILDLHM-------PYE 125 Query: 56 KARSSSANA---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106 SS A ++D + LKEA F Y R ++ +V Sbjct: 126 GLVRSSLGALYDVPFCVCQNILD--VICE-LKEA---GVFCYGAHIRGQDVKNAVFT--- 176 Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 + + G E GL + + + ++ + SLN+S A ++ Sbjct: 177 ------------HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAIL 222 >gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4] Length = 260 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 29/174 (16%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L++ +++L + Q N+G + RA +T L + + K S+ + Sbjct: 105 LKSDRPAHLMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVF- 163 Query: 68 IDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----ERIFSG 118 RV +L++ + DL AR + A L E+ Sbjct: 164 ----RVPFFYTDDLEQTVLDLK------ARG---------IRVFAAHLAGKNNYEQEDYT 204 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 N + G E GLT + +++ + P+ SLN + A ++++E Sbjct: 205 GNTAFLIGNEGNGLTEKLSDMADTWVKIPMEGKVESLNAAIAASILMFETARQR 258 >gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 266 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + +L + + A T + + VL + + I+ G Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E GL+ E IA ++ ++ P++ SLN++ A + W+ Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266 >gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi] gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi] Length = 410 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 21/180 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 QL + ++ + + N+G + R TQ+ + + KA Sbjct: 230 QQLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQ 289 Query: 66 CVI--DSVRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIF 116 + + L EA D H A N +E + E Sbjct: 290 FRLPIRDDVTWEQLALHIPPEAAEDCHVFIA------ENNPEKRTSQEGRTTVDYAELGK 343 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170 G + +I G E G++ + + + P+ SLN++ A+ L+++E Sbjct: 344 VGAHNILIIGGESHGVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRR 403 >gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1] Length = 246 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + A +SA A + +V ++K+AI Sbjct: 110 NFGAIIRTAECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKV-DHIKDAIYHLQS 168 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + AT + V I+ G E G++ + + + Sbjct: 169 SGVQIVAATEKTENTLYDVDFTI---------------PVAIVMGSEGKGVSPSILKIVD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A ++E + Sbjct: 214 HQAKLPMLGEIASLNVSVACGAFLYEIVRQR 244 >gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 46/177 (25%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+IL + N G + R+ + A AD VI R Sbjct: 95 KPLVVILDNITDPHNAGAIIRS------------------------AYCAGADGVIMQTR 130 Query: 73 VFSNLKE--------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---- 120 +++ E AI + N +++ K+ + + +G+N Sbjct: 131 RSASIGEGMYKSSAGAIEHIDLC-----EVSNIAQTIDTLKKEGLFVVGLDMNGENYYDM 185 Query: 121 -----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E GL + I S P+ F SLN S A ++++E ++ Sbjct: 186 DYDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEAVKTR 242 >gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E GLT+ AL++ I P+ SLN + A L+++E Sbjct: 174 AFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223 >gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 292 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 17/183 (9%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P ++ ++ + +L Q N G + RA + L + KA S+ Sbjct: 113 PQLSEVLDTKPKLIAVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTV 172 Query: 63 NADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-----R 114 + V+++V + A + A L + A VL Sbjct: 173 GSLFHLPVLNNVEFDHLIAAAKTTGSQVLA----ADGYAAHNLDTLQDAAVLRANQPGTE 228 Query: 115 IFSGQNVG-----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 GQ V +FG E GL E ++ ++ P+ + SLN+ A + ++ Sbjct: 229 APEGQPVLEAPTLWLFGNEGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASA 288 Query: 170 ENS 172 Sbjct: 289 RAQ 291 >gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC 27678] Length = 288 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76 N+G + R+ ++ LV P G P +A S I R+ F+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195 Query: 77 LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E + DL F A + + L + + +IFG E GL++ Sbjct: 196 MRE-LHDLGFTTVAMALEDDSVSLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ ++ + P++ SLN++ + + + Sbjct: 253 TISRADLTVKIPMSHSVDSLNVAASSAVAFY 283 >gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 318 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 17/174 (9%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 G V+ L + N+G V R++ F + + R + A +SA Sbjct: 159 QAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTA 218 Query: 66 CVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + + +LK+ + + + Sbjct: 219 ARLPVAKATNMVRSLKQFQQAGYQVVGL--------------DAGGDHTLDTYDGTTPTV 264 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E GL+ + I+S P+ SLN S A +++ E + Sbjct: 265 IVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318 >gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1] Length = 234 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 21/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 +L K V+IL + Q N G + R+ F + L ++ R+ +E +S A Sbjct: 80 EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138 Query: 65 DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 ++ +V +NL + I L +IY N+ P Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWIYGAAGEANINYNEEDYP--------------NK 183 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 V ++ G E G+ + + +I P+ SLN+S A +++ Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228 >gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti] gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti] Length = 451 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 23/170 (13%) Query: 9 QNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +G +++ LV+ N+G +AR+ F + Q +VN +++ ++ S A+ Sbjct: 292 KGNVEGLIVVASLVN--RAPNLGGLARSSEIFAVKQ-YIVNSLKDLENKEFQALSMTAEK 348 Query: 67 VIDSV-----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 ++ ++ L E + + + A + + ++I + Sbjct: 349 WLNVAELKSFQIVDYLLEMKSKGYSVVG--AEQTTGSRPI-----------QQIEFPKRS 395 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G E+ GL I+ + I P + SLN+ + +WE + Sbjct: 396 ILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQ 445 >gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato str. DC3000] gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato Max13] gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato K40] gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 165 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 E ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKVGPASD 165 >gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 16-3] gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA206] Length = 345 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + E Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAERDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4] gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7] gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4] gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7] Length = 202 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 39/195 (20%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 P++Q + I LV+P+ N+G + RA + + + + K +A Sbjct: 13 AKPEVQQA---VYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYTGKRYEYAAR 61 Query: 64 A-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 + ++L +A+ +D + + A L Sbjct: 62 GPQQYNADTQSAAERIPLTGVASLLDALPSDTKLVC-------------VDLVLGATPLP 108 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E + + +FG E + E I ++A++ P +N++ +V +++++ + + Sbjct: 109 EFVHP-EKAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNVLLYDRLAKA 164 Query: 173 IVSSEKNVKEQNTPA 187 E + A Sbjct: 165 HREQLSAQTEFDGDA 179 >gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta] gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta] Length = 405 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71 ++ + + N+G + R +Q+ + + KA I Sbjct: 235 PITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294 Query: 72 RVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L EA D H A + R R N +++ + G + +I Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDY--------ADIQSLGAHNLLII 346 Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170 G E G++ E N I P+ SLN++ A+ L+++E Sbjct: 347 GGESHGVSEEAYRFLNMVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397 >gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 146 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + +++ +FGRE G+ E + + P+ SLN++ V+++ +E Sbjct: 67 EIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFH 123 Query: 170 EN 171 Sbjct: 124 RQ 125 >gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 146 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 I + +++ +FGRE G+ E + + P+ SLN++ V+++ +E Sbjct: 67 EIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFH 123 Query: 170 EN 171 Sbjct: 124 RQ 125 >gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex] Length = 308 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 12/161 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + Q N G + R+ + ++ + + + + +S+ ++ + + + Sbjct: 149 LNEIQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTE 208 Query: 79 --EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + + + T ++ + + P II G E GL +E Sbjct: 209 FCQLLKESKWDVVGTGSKTDESNGTACKPTPVGSF-----QLSNPTLIILGNEGRGLPDE 263 Query: 136 EIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENS 172 + L I N S+N+S A +++ + NS Sbjct: 264 LVDLCTHQIYVESRSNLNKNVDSMNVSAAAAVILHSVLNNS 304 >gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri] gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri] Length = 249 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 20/171 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+GM+ R+ F++ L L+ R K + + + + L+EA L Sbjct: 44 HNLGMMMRSCTAFDVKALVLIGSR------KFNAFGSQGADAHVAFEHYETLREAREGL- 96 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW------GLTNEEIAL 139 TA+ + E+A + F+G N + G E GLT ++ A+ Sbjct: 97 -----TAKRGVTRVLGVEIVESAEPIESHPFTG-NTAFVMGNEARLDAQGHGLTEQQKAI 150 Query: 140 SNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189 + + P SLN+S A +++ + + + V E+ A + Sbjct: 151 CDGFVYIRQYGPGTASLNVSVAASIVMHQFALWANYQERERVGEKFVVAER 201 >gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH 391-98] Length = 254 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E I Sbjct: 114 QDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWID 171 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +Y T N + I + +I G E G+ + +A Sbjct: 172 KLKTHNVPVYGTALENGVPY--------------GEITPTGSFALIVGNEGNGVHQDILA 217 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + P+ SLN++ A ++ + Sbjct: 218 KCDQNLYIPIYGGAESLNVAVAAGILTY 245 >gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Pelagibacter sp. HTCC7211] Length = 247 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF- 74 + L + NIG + R+ +F + L +V R K S++ ++ +V Sbjct: 100 VCLDEVTDPRNIGSLIRSAASFKIDGL-IVKERHFPSDSKLMYKSASGCMEHLNIFKVSN 158 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 S LK ++Y AR NF V ++FG E +G+ Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKNFTDV--------------KWEGKNVLLFGSEGFGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ + +N SLNIS + ++ Sbjct: 205 KEHTGKYADFFVKIDINKDIESLNISNSAAIVFHHL 240 >gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus] Length = 1534 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 23/163 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79 N+G + R F L V + + S +A+ + V V + L++ Sbjct: 1387 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMDYLQQ 1445 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 1446 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPANLI 1490 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + P + SLN+ + L++WE ++ + Sbjct: 1491 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPP 1533 >gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 161 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--- 63 L + I L P + N G + R L + ++ P S++ + Sbjct: 4 TLPETGPNIRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRAGMDYI 62 Query: 64 ADCVIDSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + +E A + A+T A + Sbjct: 63 AAAALTRHVSWDRFEEWRASTGRRLVLAST----RAALPYTDITYRADDI---------- 108 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++FGRE G+ + ++ I P+ S+N++ + ++ E + + Sbjct: 109 -LLFGRESAGVPDHVHDKADERIIIPMVAGQRSINVAMSAAMVTGEALRQT 158 >gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7] Length = 234 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 21/146 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 +L N+G R L ++ P+D + R + A VI V V + Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L++ ++ T EA + L ++ +G + II G E G+ Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204 Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158 + ++ P+ SLN+S Sbjct: 205 RRLTREHCDYLVGLPMAGSVSSLNVS 230 >gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum] Length = 334 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 12/131 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRVFSNLKE 79 NIG + R+ + F + + L RD P + S + ++ V F + ++ Sbjct: 182 PGNIGAIIRSCFYFRIDGVILA--RDQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRK 239 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + ++ F AT+ N K +P I L + V II G E G+ + ++ Sbjct: 240 RLRNVGFKFIATSDENSAITKGYQSP----IRLPDFRPINDKVVIILGDEGRGIATDILS 295 Query: 139 LSNAIISFPVN 149 + I+ P + Sbjct: 296 QCDYIVQIPTS 306 >gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486] gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486] Length = 190 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P G N+G +AR + PR W E + + + + Sbjct: 53 PLHGANLGTLARTCDAVGA---CITVPRFPWVPE-----ALARGNTLRKPVCTHRTGDPL 104 Query: 82 ADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 L AR R ++ + + A+ L + + ++ G E+ G+ E + L Sbjct: 105 GWL-------ARQRERGARIVGVELADEAVRLADLAPARSPTVMVLGHEQHGIPPEALDL 157 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + P+ SLN++ A L +++ Sbjct: 158 LDECVEIPMVGTGSSLNVAVAGSLALYKL 186 >gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL027PA2] Length = 240 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 102 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 159 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A + E + L + + V ++ G E GL+ I+ ++ Sbjct: 160 DHGFTVA----AMELSGDSVTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 212 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN++ A + +E Sbjct: 213 VVRIPMAGGVDSLNVAAAAAVACYELR 239 >gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 345 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDD-F 265 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + TT+ +R L E+ + ++ GRE L + Sbjct: 266 RQAGYTVVTTSSDRGQA-------LFGATLPEK------MVLVLGREYDFLPEAAREPDD 312 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + SLN+S A +++ E Sbjct: 313 LCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143] Length = 157 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 32/158 (20%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ N+G V RA + VN G + A+S D+ R Sbjct: 7 CIGLHNPKSPVNVGSVMRAAGCYG------VNSVFYTGKRYDIAKSF------YTDTQRS 54 Query: 74 FSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRE 128 + L A+ DL I P + + R IFG E Sbjct: 55 YETLPLIAVDDLETII----------PLGCVPVAIEMTKDARPLPAYKHPPRAFYIFGPE 104 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L I + I P +N++ AV ++++ Sbjct: 105 DGSLRKNIIGYCSDTIYIPTTGC---MNLAAAVNVVLY 139 >gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 336 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 20/178 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN 63 L+N + L N+G + R+ F Q +V P R + A +SA Sbjct: 174 RTLRNGETPLFVALDGITDPRNLGAIIRSTAAFG-GQGVIV-PQRRSAGMTASAWKTSAG 231 Query: 64 A---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A V + + LK F+ + F+ + Sbjct: 232 AAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPGL-------------SFADRP 278 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 V I+ G E G++ +A++S P+ SLN A + ++E + + + Sbjct: 279 VVIVVGSEGKGISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRAQAQPR 336 >gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 283 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---A 82 N+G R+ +V P P +A S + R+ A+ A Sbjct: 142 NVGAAVRSAAACG-YDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPALFHEA 200 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 A R + ++ A L + V +I G ER GL + IA ++ Sbjct: 201 GFELA-ALALREDSQ-----DLRDYATELA--GDPTRKVALIAGAERDGLKPQTIARADK 252 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ + SLN++ A+ + W Sbjct: 253 VVRIAMAHGVDSLNVAGAIAIACW 276 >gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium saccharolyticum WM1] Length = 246 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 32/161 (19%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------VRVFSN 76 + N+G + R A + A+ + V Sbjct: 106 EDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLTATVAKT 143 Query: 77 LKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGL 132 A+ + + TA K + + + R+ +G++ G E G+ Sbjct: 144 SAGALNYTPVAKVTNLTATMEELKKRGMWFVCADMGGEVMYRLDLKGPIGLVIGSEGNGV 203 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + S P+ SLN S A ++ +E + + Sbjct: 204 GKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEIVRQRL 244 >gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1] Length = 297 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 19/163 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------ 68 +++L + N+G + R+ + L+ P P +A S I Sbjct: 146 IVVLENVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFD 204 Query: 69 -DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V+ N +E + ++ F A A + ++ ++ E A+ E++ +I G Sbjct: 205 GKKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGT 254 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL + I S+ ++ P++ SLN++ A + W+ Sbjct: 255 EGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 297 >gi|153803685|ref|ZP_01958271.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3] gi|124120781|gb|EAY39524.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3] Length = 127 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 17/140 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L +P++ N G + R N L L+ P EK + + V + Sbjct: 4 IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62 Query: 77 LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I L R R +F+ K ++ + G ++FG E GL E Sbjct: 63 YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113 Query: 136 EIALSNAIISFPVNPLFPSL 155 I S P SL Sbjct: 114 ------LIASLPAEQRIASL 127 >gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides BS1] Length = 267 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 16/152 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N+G + R F ++ + P + KA + A + + + +L++ + Sbjct: 128 QDPGNVGTILRTASWFGVST-VVCGPGTADRYNPKAIRAGAGSVFCL-NHYSVGDLEKEL 185 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + R ++ + + ++ G E G++ + ++ Sbjct: 186 E----------KMRRAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSMSILRKAD 235 Query: 142 AIISFP---VNPLFPSLNISQAVLLMVWECME 170 I+ P + SLN + + +++ E + Sbjct: 236 LQITIPRGRKDAGVESLNAAVSAGILLSEFVR 267 >gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM 11300] Length = 153 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 23/146 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L +P+ N+G VAR L L+ P ++ + + V + + Sbjct: 8 VVLFEPEKAGNVGNVARTCAVLG-ADLHLIRPFGFHLHDREFRRAV--MDYLQGVTLHEH 64 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + A+ ++A + A + R + ++FG E G Sbjct: 65 ANWTAYQAALPPEARVWAFST--------------HAETFHTRAGFRRGDHLVFGPESRG 110 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNI 157 L + + + P SLN+ Sbjct: 111 LPVW-LREALPALKLPQPGGGRSLNL 135 >gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 248 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 20/151 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 Q N+G + R + + + V+ +G A+ S + V ++ VF ++ Sbjct: 113 QDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFHIPIVKRNLHVF--IE 170 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E A +Y T+ +N + F + + +I G E G+ + + Sbjct: 171 ELKASGVKVYGTSLQNGSAF--------------QETAPIGSFALIVGNEGAGVDSAILE 216 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ + P+ SLN++ A ++++ Sbjct: 217 KTDLNLYVPLYGQAESLNVAIAAAVLLYHLR 247 >gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +G++ G E G++ + + S P+ SLN S A ++ +E + + Sbjct: 188 GPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQRM 242 >gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris HaA2] Length = 273 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 15/155 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71 G V++L N+G + R+ F + +V P + ++ A ++ + Sbjct: 122 GIVLVLDQITDPHNVGAIMRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELVP-L 178 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +NL A+ +L +R L + +A + + Q + ++ G E G Sbjct: 179 VLVTNLARALTELE--------DRGYLTVGLDSEGSADLAAVELR--QPLALVLGAEGKG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L N + + SLN+S A L ++ Sbjct: 229 LRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263 >gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831] gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831] Length = 246 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 13/165 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P++Q +I+L Q N+G + R + + L + ++K ++ + Sbjct: 95 PKVQED-NNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSI 153 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 I + L++ I L T +LA V + VG+I Sbjct: 154 FHIP--IYTATLEQEIHMLQTQGFT----------ILATALHDAVEYTEVSVHNKVGLIL 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G E G+ + +N I+ P+ SLN+ A ++++ + Sbjct: 202 GNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGILMYHLKK 246 >gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 12/165 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + P ++L D Q N+G + R + Q+ S K ++ A Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGA-- 164 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V+V+ T + + + A + R+ Q ++ G Sbjct: 165 -LARVQVYRYTD-------RTALLTMLTQTEIPVIGTFIDGAPLRTLRLAPEQPYILVLG 216 Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169 E G++++ AL + I+ PV+ SLN++ A +++ M Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261 >gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD] gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD] Length = 229 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 81 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRA--GLDYHDMAHVVLHPNFE 137 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I N ++FG E + + Sbjct: 138 NLVESMPNSRIIAFTA--------------NATKLYTEIEYKSNDILLFGPEPGDIPDPM 183 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + V+E + K Sbjct: 184 DVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQLGFTGGK 229 >gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT 1] Length = 264 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 16/163 (9%) Query: 13 KGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 K P ++LV Q N+G + R+ L+ + KA ++ A + Sbjct: 111 KKPALLLVADGVQDPGNLGTMLRSAAAAGADGAILLPGTVDATNPKALRAAMGAYFALSV 170 Query: 71 VRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V + A+A TTA A V +R V ++ G E Sbjct: 171 VETNHQDCLSALAGHGVSLVTTA-------------ARAEVAYDRYDWNTPVAVVIGNEG 217 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ + + +S P+ SLN + A+ ++ +E Sbjct: 218 SGVSPAMAEAAKSRVSIPMAGAVESLNAAIAMSVIFFEAARQR 260 >gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC 10379] Length = 251 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 20/155 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL Q N+G + R FN + L +K S+ ++ ID F Sbjct: 106 VLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFHID---CFD 162 Query: 76 NLK--EAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 N+ E I ++H I+AT+ + + + V ++FG E G Sbjct: 163 NIDLVELIDEMHEFNIFATSLKADKY-------------IEQLDNITGKVAVVFGNEGAG 209 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ E ++ N ++ + SLN+S A +++ Sbjct: 210 VSEEILSKVNNLLKISMPGRAESLNVSIAAGIVMH 244 >gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 309 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 S ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 157 SLPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 R +NL + D + V+ + + + + ++ G E Sbjct: 217 AR-ATNLTRTLQDWA----------DRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGK 265 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S A +++ E Sbjct: 266 GLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 335 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 22/165 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSV 71 ++ L N+G V R++ F + + R + A +SA A + Sbjct: 186 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 245 Query: 72 RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 NL A+ + A + L + V I+ G Sbjct: 246 T---NLTRALEQYQKAGLTVVGLAA-------------DGEAELGDLDALEGPVVIVVGS 289 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ + + P+ SLN A ++++E Sbjct: 290 EGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRR 334 >gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM 44728] gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 23/159 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73 ++L N G + R +V P + K +S + + VR Sbjct: 82 AVVLDGIADPGNAGTILRTADAAGAQ--AVVFPHGSVDPYNGKCVRASVGSLFHLPVVRG 139 Query: 74 FSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGR 127 + +A+ R +LA + Q +FG Sbjct: 140 GDTDEHLDAL-------------RAKGLRILAADVRGETDLDAAIDDGLLRQPTAWLFGS 186 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E GL++ ++ + P+ SLN++ A + ++ Sbjct: 187 EAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLY 225 >gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641] gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641] Length = 303 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 R + + + ++ G E GL + L + + P+ P SLN++ A + WE Sbjct: 245 ARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMAPGIDSLNVAAASAVAFWETR 301 >gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1] Length = 156 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA + VN G E+AR D V D+ RV Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + E A L + + + IFG E L Sbjct: 56 HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + E I P +N++ V +++++ M + + Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153 >gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length = 290 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 19/159 (11%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 ENIG + R + + ++ S V+ F+ L Sbjct: 145 ENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMG--HVL--TVPFATLP------- 193 Query: 86 FIYATTARNRNNFK------SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 TT R+ + V++ A V + I+ G E GLT +A Sbjct: 194 --GTTTTWQRSLDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAMAA 251 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ P++P SLN++ + + +E + + + Sbjct: 252 TDVRARIPMSPGTDSLNVATSAAIAFYERLRVQSQRAGQ 290 >gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio africanus str. Walvis Bay] Length = 262 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 23/146 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R ++ L LV P+ A +SA A + RV +NL A+ Sbjct: 114 PGNVGALVRTVYALGGAGL-LV-PKHHAARLGTGALKASAGALLRLPIARV-TNLARALE 170 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + IY T N L P+ A+ ++ G E G+ Sbjct: 171 ECAEAGYTIYGTQGEVGENLF-FLEPRLPAV-------------VVLGGEEKGMRPGVAK 216 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLM 164 + + P+ F SLN++QA L+ Sbjct: 217 RCDFTLRIPLQHGFDSLNVAQAGALI 242 >gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM 8271] Length = 273 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 16/161 (9%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSV 71 ++IL + N+G + RA + + L + + K SS A ++ + Sbjct: 119 ILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNPKVLRSSMGAVFSMCILQEI 178 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 I+A +N+ V++ E V +++ + ++ G E G Sbjct: 179 ERPD-----------IWAFC--RQNHLNLVVSALEGQSVYRQKMDQSLPLALVIGSEANG 225 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + E +S I P+ SLN + A ++++E + Sbjct: 226 VAPEFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQA 266 >gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05] Length = 240 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 23/155 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82 N+G R+ N+ + + + R SA +++++F +NL AI Sbjct: 103 PRNLGACIRSAAASNVAGVIINKHHCSPITPLVRQVSAGGT---EAMKIFIVTNLINAIK 159 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 I T+ E A ++ + + + I G E G+ + + Sbjct: 160 HFEKLGYLILGTS--------------EHAKSMHTELDLNKPILTIIGSEEEGMREKTLE 205 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + + N SLN+S A ++++E + Sbjct: 206 KCSTVCTLSKNETLNSLNVSVAAGVILFEIARQKL 240 >gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 301 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 23/177 (12%) Query: 15 PVIILV--DPQLGENIGMVARAMWN---FNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 P I+L Q +N+G R + ++++ L P P + + A D Sbjct: 131 PEIVLCLDGLQYTDNVG---RLLKTAWAVGVSRVVL-TPESCDPWDWKVLEESGAK-YWD 185 Query: 70 SVRVFSNLKEAIADLHF--------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + + + +A+ L F + AT++ + P LN R + V Sbjct: 186 KMPIHTGV-DAVRLLKFCAARQLLPVVATSS---GVGRQGTEPLPTVKKLNVRNAGYRGV 241 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E G + E + ++ P++ SLN S A +++++ EK Sbjct: 242 MVVVGSEARGPSMELLECCTR-VTLPMSMAADSLNASVAGGVLLYDIALRLQEEEEK 297 >gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442] Length = 257 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 117 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 174 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L N E + E +G + +I G E G+ E +A + Sbjct: 175 KL---------KEKNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEVLAKCDQ 224 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 225 NLYIPIYGGAESLNVAVAAGILTY 248 >gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense MSR-1] Length = 156 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 14/162 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L P + +N G + R + L ++ P EK + +D RV Sbjct: 8 LFQPDIPQNAGALLRLSACLGIP-LEIIEPCGFLWDEKRMRRA--GMDYVDHARVT---- 60 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 R + + VL L+ F +V I+ GRE G+ E A Sbjct: 61 ------RHASWNAFRQKPGGRLVLLTTAGGTRLDGFSFRPGDV-IMMGRESAGVPPEVAA 113 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 ++ + P+ P SLN++ A L V E + + + Sbjct: 114 EADVTVRIPMAPGLRSLNVALAATLAVGEGLRQLRAYPPEEL 155 >gi|313763452|gb|EFS34816.1| conserved domain protein [Propionibacterium acnes HL013PA1] gi|313773427|gb|EFS39393.1| conserved domain protein [Propionibacterium acnes HL074PA1] gi|313793838|gb|EFS41867.1| conserved domain protein [Propionibacterium acnes HL110PA1] gi|313801228|gb|EFS42486.1| conserved domain protein [Propionibacterium acnes HL110PA2] gi|313811442|gb|EFS49156.1| conserved domain protein [Propionibacterium acnes HL083PA1] gi|313816634|gb|EFS54348.1| conserved domain protein [Propionibacterium acnes HL059PA1] gi|313822264|gb|EFS59978.1| conserved domain protein [Propionibacterium acnes HL036PA1] gi|313831181|gb|EFS68895.1| conserved domain protein [Propionibacterium acnes HL007PA1] gi|313834842|gb|EFS72556.1| conserved domain protein [Propionibacterium acnes HL056PA1] gi|314914611|gb|EFS78442.1| conserved domain protein [Propionibacterium acnes HL005PA4] gi|314920660|gb|EFS84491.1| conserved domain protein [Propionibacterium acnes HL050PA3] gi|314924560|gb|EFS88391.1| conserved domain protein [Propionibacterium acnes HL036PA3] gi|314930430|gb|EFS94261.1| conserved domain protein [Propionibacterium acnes HL067PA1] gi|314957364|gb|EFT01467.1| conserved domain protein [Propionibacterium acnes HL002PA1] gi|314966004|gb|EFT10103.1| conserved domain protein [Propionibacterium acnes HL082PA2] gi|314968370|gb|EFT12469.1| conserved domain protein [Propionibacterium acnes HL037PA1] gi|314974060|gb|EFT18156.1| conserved domain protein [Propionibacterium acnes HL053PA1] gi|314978785|gb|EFT22879.1| conserved domain protein [Propionibacterium acnes HL072PA2] gi|314981817|gb|EFT25910.1| conserved domain protein [Propionibacterium acnes HL110PA3] gi|315081118|gb|EFT53094.1| conserved domain protein [Propionibacterium acnes HL078PA1] gi|315083439|gb|EFT55415.1| conserved domain protein [Propionibacterium acnes HL027PA2] gi|315087006|gb|EFT58982.1| conserved domain protein [Propionibacterium acnes HL002PA3] gi|315089181|gb|EFT61157.1| conserved domain protein [Propionibacterium acnes HL072PA1] gi|315090685|gb|EFT62661.1| conserved domain protein [Propionibacterium acnes HL110PA4] gi|315094896|gb|EFT66872.1| conserved domain protein [Propionibacterium acnes HL060PA1] gi|315095235|gb|EFT67211.1| conserved domain protein [Propionibacterium acnes HL038PA1] gi|315099080|gb|EFT71056.1| conserved domain protein [Propionibacterium acnes HL059PA2] gi|315104168|gb|EFT76144.1| conserved domain protein [Propionibacterium acnes HL050PA2] gi|315106687|gb|EFT78663.1| conserved domain protein [Propionibacterium acnes HL030PA1] gi|315108913|gb|EFT80889.1| conserved domain protein [Propionibacterium acnes HL030PA2] gi|327329570|gb|EGE71329.1| rRNA methyltransferase [Propionibacterium acnes HL096PA3] gi|327333955|gb|EGE75671.1| rRNA methyltransferase [Propionibacterium acnes HL097PA1] gi|327444570|gb|EGE91224.1| conserved domain protein [Propionibacterium acnes HL043PA1] gi|327446242|gb|EGE92896.1| conserved domain protein [Propionibacterium acnes HL013PA2] gi|328752004|gb|EGF65620.1| conserved domain protein [Propionibacterium acnes HL020PA1] gi|328757793|gb|EGF71409.1| conserved domain protein [Propionibacterium acnes HL025PA2] Length = 79 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + G E WGL + AL++ I+ P+ SLN+S A ++++ Sbjct: 24 RPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 71 >gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165] gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL087PA2] gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL046PA2] gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA1] gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA2] gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL063PA1] gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL036PA3] gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA2] gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA2] gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA2] gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL005PA3] gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL002PA3] gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL072PA1] gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL096PA3] gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL013PA2] gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL020PA1] gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266] Length = 269 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 N+G + R L+ PR P +A +S + R+ L E + Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D F A + E + L + + V ++ G E GL+ I+ ++ Sbjct: 189 DHGFTVA----AMELSGDSVTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 ++ P+ SLN++ A + +E Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268 >gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus] Length = 1579 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 23/163 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79 N+G + R F L V + + S +A+ + V V + L++ Sbjct: 1432 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMNYLQQ 1490 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + + TA++ + + P + ++ G ER G+ I Sbjct: 1491 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPANLI 1535 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + + P + SLN+ + L++WE ++ + Sbjct: 1536 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPP 1578 >gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01] gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN] gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus crispatus 214-1] Length = 255 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 17/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + I D + V A +A L + + +I G E G++ Sbjct: 171 DLADVITDFQ----------DAAIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN + A +M++ Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252 >gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1] gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1] Length = 233 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 25/186 (13%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M + P + P++ N G R T L LV P + Sbjct: 65 MLSADDAARAETHTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRR 123 Query: 61 SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 + D V N + + + I A TA A L I Sbjct: 124 A--GLDYHDMAHVVLHPNFENLVESMPNSRIIAFTA--------------NATKLYTEIE 167 Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172 N ++FG E + + + +A + + P+ P SLN++ + V+E Sbjct: 168 YKPNDILLFGPEPGDIPDPMDVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 227 Query: 173 IVSSEK 178 + K Sbjct: 228 GFTGGK 233 >gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196] Length = 265 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A S+ Sbjct: 183 KL---------KENNVPVYGTALENGVPFAEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris CGA009] gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009] gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris TIE-1] Length = 275 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 15/155 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71 G V++L N+G + R+ F + +V P + ++ A ++ + Sbjct: 122 GIVLVLDQITDPHNVGAILRSAAAFAVQ--AIVTTARHSPEATGVLAKSASGALELVP-L 178 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + NL A+ +L+ +R L + + Q + ++ G E G Sbjct: 179 VLVQNLARALTELN--------DRGFLTVGLDSE--GDDDLAAVELRQPLALVLGAEGKG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L N + + SLN+S A L ++ Sbjct: 229 LRQLTRQTCNTVARLDMPGEIKSLNVSNAAALALY 263 >gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus DSM 12680] Length = 265 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 16/170 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + G ++I+ + + N+G + R W + + L+ + K SS A Sbjct: 105 PESDGLILIVDNLRDPGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFP 164 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N E H R V PK + + + + NV ++ G E Sbjct: 165 VFERVGN-DEVRELCH---------RGYRLVVADPKASLVFTDADYY--GNVAVVIGGET 212 Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G++ EE+ S + P+ SLN + A ++++E + E Sbjct: 213 AGISAVFEELPASR--VRIPLREGVDSLNAAVACGIILYEAWSQRHLVRE 260 >gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] Length = 255 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D + + + +I G E G+++ Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKTAKQLPDFEKVPQLALIIGNEAHGVSST 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +LS+ + P+ SLN + A +M++ Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 258 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 15/151 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS-NLKEA 80 Q N+G + R +V+ R S K S + + +++ +L + Sbjct: 120 QDPGNVGTMVRTADAAGFAG-VVVSHRSADIFSPKVIRSMQGSQFHL---KLYEGDLAKW 175 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I D + A + + L P+ + E G+ +I G E G++++ ++ + Sbjct: 176 IEDFKTVNA------PIYGTQLNPQAKSFRDAE---PGKTFALIMGNEGQGMSDQLLSQT 226 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 A + P+ SLN++ + +++++ +N Sbjct: 227 TANLYIPMRGQAESLNVAVSAGILMFQLNKN 257 >gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor bescii DSM 6725] Length = 253 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 20/176 (11%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 + + S + P ++L+ +N G + R+ + + + R+ P + +SA A Sbjct: 86 EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVI-ETRNSCPVTPAVEKASAGA 144 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + RV + ++E +++A A N K V E + Sbjct: 145 VEYMKIARVVNLRRTIEELKEKGIWVFAADA---NGSKPVY---ECDFTI--------PT 190 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E G+T ++ +I P S N S A ++ +E ++ + E Sbjct: 191 CVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037] gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037] Length = 265 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 16/100 (16%) Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 ++ V + EA L + A + L R + +FG Sbjct: 174 LELAHVVERVHEA--GLRVVAA--------------DVDGGDFLASRDLLSEPTAWLFGN 217 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 E GL +A ++ + P+ SLN++ A + ++E Sbjct: 218 EARGLDEAALAHADLSLRLPIFGRAESLNLATAASVCLYE 257 >gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium JCVIHMP022] Length = 288 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76 N+G + R+ ++ LV P G P +A S I R+ F+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTG 195 Query: 77 LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E + DL F A + + L + + +IFG E GL++ Sbjct: 196 MRE-LHDLGFTTVAMALEDDSISLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ ++ + P++ SLN++ + + + Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 345 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPG 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula ATCC 17745] gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. 3_1_44] Length = 243 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E G++ + +++ P+ SLN S A ++++E + Sbjct: 188 PTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243 >gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae T7901] Length = 228 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 12/159 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+ + R + + V P DG+ + + ++ + +V+ S++ + DL Sbjct: 32 NLSAITRTCDAVGIDTIHCVMPEDGY---QTYNGTSASAEKWVAVQHHSSISAPVNDL-- 86 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 R F+ V A + + + ++ G E G++ E A + ++ Sbjct: 87 -------KREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAAAAVDYNVTV 139 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 P+ + S N+S A +++ E + + Sbjct: 140 PMVGMVESFNVSVAAAIILMEAQHQRQQAGLYDQPRLTA 178 >gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 198 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSS 176 N + G ER L+ + ++ P SLN+S A L++++ Sbjct: 106 ANAAYVLGPERSSLSPALLERCTHVVRIPTR---FSLNLSVAGALVLYDRLLQHGRYAER 162 Query: 177 EKNVKEQNTPA 187 PA Sbjct: 163 PVMAGGAAQPA 173 >gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 262 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 10/163 (6%) Query: 11 SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 GP++++ D + N G V R + + L + K +S + + Sbjct: 108 DIAGPLVVICADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFHLP 167 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 A T + A + + + + G E Sbjct: 168 VAVERD--PVAAVKAAKAAGLTVLAADMHG-------TADLFSADDLLARPTAWLMGNEA 218 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 WGL E A ++ I+S P+ SLN+S A L ++ Sbjct: 219 WGLPPELAAEADEIVSIPIFGKAESLNLSTAAALCLYASARAQ 261 >gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1] Length = 288 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76 N+G + R+ ++ LV P G P +A S I R+ F+ Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195 Query: 77 LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E + DL F A + + L + + +IFG E GL++ Sbjct: 196 MRE-LHDLGFTTVAMALEDDSVSLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ ++ + P++ SLN++ + + + Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 267 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 20/149 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---- 81 N+G V R+ L+ PR P ++ S + R+ + +A Sbjct: 131 NVGAVFRSAAALG-ADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKA 189 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140 A H LA + +I L+ + + V +I G E GL+ + I + Sbjct: 190 AGFHLAA-------------LALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAA 236 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++++ P+ SLN++ A + ++ Sbjct: 237 DSVVKIPMMHGVDSLNVAAASAVGMYTLR 265 >gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis 409-05] gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis 409-05] Length = 229 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 81 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRA--GLDYHDMAHVVLHPNFE 137 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I N ++FG E + + Sbjct: 138 NLVESMPNSRIIAFTA--------------NATKLYTEIEYKPNDILLFGPEPGDIPDPM 183 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + V+E + K Sbjct: 184 DVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQLGFTGGK 229 >gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] Length = 230 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 151 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 210 Query: 160 AVLLMVWE 167 A L +E Sbjct: 211 AAALAFYE 218 >gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 345 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDFLPEAAREPG 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01] gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01] Length = 223 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 29/157 (18%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G + RA + ++ + + + D + D+ +V Sbjct: 75 CIGLFNPKSPENVGSIMRAAGCYGVS--------SVFYTGTRYDRAK--DFITDTKKVHQ 124 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRERW 130 ++ I DL R P +V + R IFG E Sbjct: 125 DIPLINIDDL----------RKILPLGCTPVAVELVDDARALPAYTHPDRALYIFGPEDG 174 Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166 L E + ++ P +N++ V ++++ Sbjct: 175 SLQQEILDWCAGEVVYIPT---QGCMNLAATVNVVLY 208 >gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68] gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733] gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410] gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408] gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68] gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071] gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162] gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus faecium TX0082] Length = 254 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ N II G E G++ E ++L++ + P+ SLN+ A ++++ Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|229015864|ref|ZP_04172832.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region [Bacillus cereus AH1273] gi|228745426|gb|EEL95460.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region [Bacillus cereus AH1273] Length = 61 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 124 IFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FGRE GL I + + P+ SLN+S ++++E Sbjct: 1 MFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 50 >gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545] Length = 219 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 12/154 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R+ + L +V+ D K ++ ++ + + +A+ D Sbjct: 60 GNVLAVCRSTEALGIGTLGVVS--DTGLKFKQSGRTSGGAVKWTHLQQWRSTADAVRD-- 115 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 A+ R ++ + E L E +I G ER G++ E L++ + Sbjct: 116 ------AKKRG-YRVLTTVFEGGHPL-EHYDWTVPTAVILGNEREGVSEEAKKLADGGVY 167 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 +N SLN+S A L++ +++ + K+ Sbjct: 168 VSMNGFTESLNVSVASSLVMHHAVQDRTRRAGKH 201 >gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13] Length = 252 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 20/151 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L S K S+ + + R +LK I Sbjct: 117 QDPGNVGTMIRTADAAGMDMVILGEGCADLYSSKVIRSTQGSIFHLPIAR--GDLKTYIK 174 Query: 83 DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +Y T+ +N F + + S +I G E G+ E + Sbjct: 175 QCKELQTPVYGTSLQNGVPF--------------QEVQSSNTFALILGNEGKGMAQEHLE 220 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +++ + P++ SLN+ A ++++ Sbjct: 221 MTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251 >gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22] gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22] Length = 272 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R L+ L Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LEAWPKGLD 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R+ L P E A L+E V ++ G E GL+ + + ++ + Sbjct: 187 AV-----RDAGFTLLALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN+ Sbjct: 242 RIPMAHGVDSLNVGA 256 >gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 189 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 19/157 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV-IDSVRVFSNLKE 79 NIG + R + + + +V + P ++ + ++ + + V++F + Sbjct: 38 NIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLNAISVSDIKWSFVKIFKDTNS 97 Query: 80 AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + L T+ + VL + + + FG E G++ Sbjct: 98 CMDHLEKESFVSVITSPHIKGYKNVVLH--------KHDYTKYKKLAVWFGNEGVGISKT 149 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + S+ I+ P+ + SLN+ + ++++E + Sbjct: 150 AVKRSSFCINIPMYGIIESLNLGTSSGIVLYEIAKQR 186 >gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula DSM 2008] Length = 243 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E G++ + +++ P+ SLN S A ++++E + Sbjct: 188 PTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243 >gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans] gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans] Length = 407 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 24/182 (13%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +L + ++ + + N+G + R +Q+ + + KA Sbjct: 225 EQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284 Query: 64 A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115 I + L EA D H A + R R N +++ + Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338 Query: 116 FSGQNVGIIFGRERWGLTNEEIALS-------NAIISFPVNPLFPSLNISQAVLLMVWEC 168 G + +I G E G++ EE I P+ SLN++ A+ L+++E Sbjct: 339 --GAHNLLIIGGESHGVS-EEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFEL 395 Query: 169 ME 170 Sbjct: 396 RR 397 >gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium] Length = 247 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 16/175 (9%) Query: 3 PYAPQLQN---SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 P +L N P +IL+ Q N+G R+ + + + + Sbjct: 82 PNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSANAAGVDCVVINKDGSAPVNALV 141 Query: 58 RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 +SA A ++ ++VFS + +L A + + ++ + +I Sbjct: 142 HKTSAGA---LNQLKVFS-----VTNLSRSI--KALQKQDIW-IIGLDGSTDQSFYQIDL 190 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ I+ G E GL + + P+ SLN+S A + ++E Sbjct: 191 SSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFETSRQR 245 >gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium KLH11] Length = 257 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P ++L+ N+G + R+ + ++ R + + + + A ++ Sbjct: 105 REHPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIF 125 NL +AI +L N VL A E G + V ++ Sbjct: 162 QPYLRVRNLADAIVELQ----------NMGFLVLGLDGEADDTIESSLGGDRDRPVALVL 211 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ F SLN+S A + ++ Sbjct: 212 GAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252 >gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium sp. YIT 12067] Length = 261 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%) Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R +L + + + G E G++ +A ++ + P+ S Sbjct: 182 RKAGYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAES 241 Query: 155 LNISQAVLLMVWECMENSI 173 LN++ A ++++E + + Sbjct: 242 LNVAMAAGIVMFEALRQKL 260 >gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE] Length = 318 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 30/178 (16%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A N + ++ L N+G + R++ F +V P +A +A A Sbjct: 160 AAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGA 212 Query: 65 --DCVIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114 + R +NL A+ + A E + E+ Sbjct: 213 WKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG-----------EHTVEDLEQ 261 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + V I+ G E GL + + + SLN A ++++E Sbjct: 262 LS--GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317 >gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp. GAI101] Length = 264 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P ++L+ N+G + R+ + V + + S + +A ++ Sbjct: 111 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS---AVIGMRHHAAPETGSLAKSASGALER 167 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125 NL ++I +L N VL A + E G+ V ++ Sbjct: 168 QPYLRVRNLADSIKELQ----------NMGYLVLGLDGEAEITVEAALEGKRDRPVALVL 217 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + ++ F SLN+S A + ++ Sbjct: 218 GAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAAIALY 258 >gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM 30120] Length = 370 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 15/149 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ + ID+ + L + Sbjct: 231 PHNLGGIMRSCAHFGVKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGFTTTLDKFRQ 290 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ ++ + + ++ G+E GL++ + Sbjct: 291 AGYTIVTTSS-------------HKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDM 337 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + SLN+S A +M+ + Sbjct: 338 SLYIGGTGKVESLNVSVATGIMLSQWWSQ 366 >gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] Length = 257 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 178 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 237 Query: 160 AVLLMVWE 167 A L +E Sbjct: 238 AAALAFYE 245 >gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 246 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 24/171 (14%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S K V+IL + N+G + R+ + + + N R S A + Sbjct: 91 EQSKKNFVMILDKIEDPHNLGAIIRSAHLSGVDAVIIPNRRSANVDSTVEKVSVGATSYM 150 Query: 69 DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +RV +NL +AI L +IY N F + L ++ +I Sbjct: 151 KIIRV-TNLNDAIEKLKKAGLWIYCLDMGNDYYFNTDLT---------------GDIAVI 194 Query: 125 FGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G++ E+ S+ +IS P+ SLN S A ++++E + + Sbjct: 195 VGNEGKGVS--ELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEVLRQRM 243 >gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2] Length = 272 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 6 PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 P ++ P L P Q N+G V RA F + Q+ ++ K+ + Sbjct: 102 PPFDDTLYHPGCTLCVPFQDPSNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAG-- 159 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 I + F R + L R + ++ Sbjct: 160 --------------SNIFRVSFFQGPALRQLKKLEIFLIIMSTEGKDAARFEFPDSFCLL 205 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 G E G+ EI + +S P+ SLN + A ++++ + + N KE Sbjct: 206 PGMEGPGIP--EILKGSGNVSIPMAKGVESLNAAMATGIVLYLWR-----NRQFNFKEAV 258 Query: 185 TPATKG 190 PA Sbjct: 259 NPAANA 264 >gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 134 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 30/53 (56%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + FG E+ G+++ + S A ++ P+ + SLN++ + ++++E + Sbjct: 51 KLAVWFGNEKRGISDRAVERSEACVAIPMFGMIESLNLATSSGIVLYEVTKQR 103 >gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio] Length = 387 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 24/167 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF- 74 +L Q N+G + R+ + + R+V+ + +SA V+D VF Sbjct: 229 VLDGVQDPMNLGAILRSAYYLGVD--RIVSSINNSCPLTPTVSKASAGVMEVMD---VFG 283 Query: 75 -SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 SNLK + + + T + ++ ++ + ++ G E Sbjct: 284 CSNLKRMIKVKVEEGWQVVGTVGLEEGSS-------QSNVLSCSDFKMSRPTLLLMGGEG 336 Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172 GL++E L + +I+ P ++P SLN+S A +++ + Sbjct: 337 DGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTR 383 >gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) (MRM1) [Danio rerio] Length = 321 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 24/167 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF- 74 +L Q N+G + R+ + + R+V+ + +SA V+D VF Sbjct: 163 VLDGVQDPMNLGAILRSAYYLGVD--RIVSSINNSCPLTPTVSKASAGVMEVMD---VFG 217 Query: 75 -SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 SNLK + + + T + ++ ++ + ++ G E Sbjct: 218 CSNLKRMIKVKVEEGWQVVGTVGLEEGSS-------QSNVLSCSDFKMSRPTLLLMGGEG 270 Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172 GL++E L + +I+ P ++P SLN+S A +++ + Sbjct: 271 DGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTR 317 >gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis RB2256] Length = 272 Score = 49.3 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ ++ P++IL NIG V R+ F+ + + S S++ A Sbjct: 116 EEVDAESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGAL 175 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + VRV NL A+ ++ + + + L E + G V ++ Sbjct: 176 ETVPWVRVV-NLSRALEEI---------AEAQYWRIGLMGDTETTLGETL-DGSKVALVL 224 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 G E G+ + + + + P++P SLNIS Sbjct: 225 GSEGDGMRHNVMEHCDVLARLPISPRMESLNISN 258 >gi|20093840|ref|NP_613687.1| RNA-binding protein [Methanopyrus kandleri AV19] gi|19886766|gb|AAM01617.1| Predicted RNA-binding protein containing THUMP domain [Methanopyrus kandleri AV19] Length = 333 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 20/117 (17%) Query: 39 NLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 L L LV P + A + A +ID +R+ +LKEA+A+ + Sbjct: 201 GLGSLILVEP-----NRDAVRGAEEKVGASSLID-LRIEEDLKEALAEFDVVVGL----- 249 Query: 96 NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVNPL 151 AP + +L + + ++ G E GL+ E L++ ++ P Sbjct: 250 ----HPTAPNAESELLRA-VEGANQICLLTGSETKGLSREAKELADVLVHLGPTTAE 301 >gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC 50581] Length = 1676 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 20/163 (12%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKEAI 81 N+G +AR F L L L ++ S AD + V + + E Sbjct: 1528 NLGGLARTAEIFGLESLVL-GNASFATDPSFKAMSMTADMWLKIEEVQPHRLIQWIAEKK 1586 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D + I +R+ + + Q ++ G ER G E ++L + Sbjct: 1587 KDGYSIVCLEQSSRSVY-------------LQDAELPQKAVLVLGNERNGCPEEILSLCD 1633 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQ 183 + SLN+ + + +W+ ++ ++E++V Sbjct: 1634 MTVEIQQIGNTRSLNVHVSCAIFIWKWACQHRFATAERSVIPA 1676 >gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 250 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + A V + ++ G E G+ Sbjct: 169 LKKRGYWIFGT---------------DMAGVDYREWNANGKTVLVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAFNSR 246 >gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001] Length = 588 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 21/175 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + P S K V++L + N+G + R ++ + + + ++A Sbjct: 391 FIPCRPGSPKPLVLLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAG 450 Query: 64 ADCVIDSVRVFSNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNE 113 A + +R+F ++++ +A L A TA RN+ + P+ + + Sbjct: 451 AA---EELRLF-SVEDPVAFLDASQKAGWASYAAVAPTAGLRNDSRQW-TPE---GIEDA 502 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMV 165 + + + +I G E GL + ++ I+ P ++ SLN+S A L+ Sbjct: 503 KPLTKEPTILILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATALLC 557 >gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM 5501] Length = 268 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 Q ++ G E G E + L++ + P++ SLN + A ++++E + + Sbjct: 211 QPTALVIGNEGAGAQPETLKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQRKNNP 268 >gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr] Length = 218 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + FG E GL+ E ++ + P+ S NIS AV ++++ Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMYGFTQSYNISVAVAIVMYSL 176 >gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 345 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKIVLVLGREYDYLPEAAREPD 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155] gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155] Length = 233 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 19/163 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CV--ID 69 + ++L + N + R F + + ++ + + + K S SA+ + + Sbjct: 41 EHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKAWN 100 Query: 70 SVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ + +K A+ + I AT+ R + + + + + + FG Sbjct: 101 ESKIDNTVKCLSALKKQGYKICATSLRPESIT-------------LDELPVDEPIALCFG 147 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL+ +++ + P+N S N+S A L + Sbjct: 148 TELTGLSEVAHEMADYMTYIPMNGFIQSFNVSVASALSLSHLR 190 >gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1] gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1] Length = 156 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA + VN G E+AR D V D+ RV Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + E A L + + + IFG E L Sbjct: 56 HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + E I P +N++ V ++++ Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLY 140 >gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp. 'sapolanicus'] Length = 267 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 21/161 (13%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSV---R 72 L Q N+G + R + + ++K +S A + V Sbjct: 121 LDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRASMGGIFAIPIWQKVSKNE 180 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +LK+ AD + A + +F+ Q + ++ G E GL Sbjct: 181 FKKDLKDRAADFELLAADIKAEKYHFEH---------------QYQQKLILMIGNEANGL 225 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + +++ + P+ SLN + A ++ +E + + Sbjct: 226 AEDLLNIADMKVKIPLKGEMESLNAAIAAAVISFEILAQQL 266 >gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM 17093] Length = 276 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 12/172 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 LQ +A V+++ + N+G + R + + + SS + Sbjct: 117 RDLQLAADALVLVVDGLEKPGNLGALLRTADGVGAAAVFATGAGTDFENPNVIRSSMGSV 176 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + L+ A+L A R ++A A L ++ Sbjct: 177 FSL------PTLRAPAAELL------AWLRAQGFRLVAATPHADTLFWDAPYTGRTALLL 224 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E GL+ + ++ ++ P+ L SLN++ A L+++E + + Sbjct: 225 GTEHDGLSALWLEAADVRVTIPMGGLADSLNVATAGALLLYEALRQRRRRAP 276 >gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM 13479] Length = 259 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 11 SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65 GP + IL Q N+G + RA +T + + + + K S+ + Sbjct: 105 DRPGPALLMILDTIQDPGNLGTILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRV 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + + L +YA RNN+ E+ + G + Sbjct: 165 PFVYTAALPQTLANIKKRGVRLYAAHLEGRNNY--------------EKEDYTVDTGFLI 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL++E ++++A + P+ SLN + A ++++E Sbjct: 211 GNEANGLSSETASMADAYVKIPMMGKVESLNAAVAASVLMFEAARQR 257 >gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098] Length = 261 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 17/163 (10%) Query: 8 LQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62 LQ +A+ P V+ L Q N+G + R ++ + L PR + A ++A Sbjct: 102 LQAAAEAPLPLVVALDQVQDPGNVGTLCRTLYALGGAGVIL--PRHNSAYLGPAAHRAAA 159 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + RV +NL A+ + + E A+ L Sbjct: 160 GALERLPVARV-TNLAHALDEAEEA-GFSIYGAGCGPDAADAFEHAMQL--------PAV 209 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 ++ G E GL ++ P+ F SLN++QA +++ Sbjct: 210 LVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNVAQAGAILL 252 >gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 253 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 23/171 (13%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVR 72 I L + N+G + R + F+L L +P + + ++ + V Sbjct: 103 SIAIYLDSIRSAFNVGSIIRTVEAFSLGSLYF-SPETPCVEHSQVQKTAMGTS---EWVT 158 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERW 130 F ++ + DL K ++A + AI + + +F + ++ G E + Sbjct: 159 CFKDIP--LTDL-------------PKPIIALETSPCAISIYDFVFP-EVFSLVLGNEEY 202 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 G + + ++ ++ P+ SLN++ A + E + + + Sbjct: 203 GCSEATLKQADFLLQIPLCGRKNSLNVANAFAIAAGEIRRQKKLRIHHDEE 253 >gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672] Length = 272 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R L L Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDAWPKGLE 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R L P E A L+E V ++ G E GL+ +A ++ + Sbjct: 187 AV-----REAGFTLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P++ SLN+ Sbjct: 242 RIPMSHGVDSLNVGA 256 >gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1] gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1] Length = 244 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 13/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANAD 65 + Q+ ++IL + +N G + R FN+ L + N R + +S+ A Sbjct: 87 EFQHKNNILILILDSIEDPQNFGAILRTAEQFNI-DLVITNQRKSVKDNATVLRTSSGAS 145 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + V N+ I + + A +N + + +I Sbjct: 146 QYVNKLTV-PNINNVIR----------YLKKQGFWIYASDIKGQAINNTKITDNKIALIM 194 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G+ N S+ +I P SLN+S + ++++E Sbjct: 195 GNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ 240 >gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 18/149 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79 Q N+G + R + + L+ S K S ++ + R+ +E Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNE--EECFA 176 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+ TT +A ++ + + ++ G E G+++ + Sbjct: 177 ALKQAKISILTTT-------------LSANSVSYKTVEESSFALVMGNEGAGVSDFAVES 223 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ ++ + SLN++ A ++++ Sbjct: 224 ADKLVHIDMPGQAESLNVAVAAGILMFSL 252 >gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680] gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680] Length = 272 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R+ + + Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPKGLE--- 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R L P E A L+E V ++ G E GL+ + + ++ + Sbjct: 187 -----SVREAGFNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN+ Sbjct: 242 RIPMAHGVDSLNVGA 256 >gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 353 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 31/201 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N G V R+ + + + + R+ P + SSA A V+D VFS Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRE 128 L+ + T S P+ E I + ++ G E Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVG-----CPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNE 259 Query: 129 RWGLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSE 177 GL+ E A +++ P P SLN+S A +++ Sbjct: 260 GSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICNQRKGFPTEGERR 317 Query: 178 KNVKEQNTPATKGELLSFLDY 198 + +++ P+ + E LS + Sbjct: 318 QLLQDPREPSARSEGLSMAQH 338 >gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 317 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ L N+G V R++ F +V P +A +A A S Sbjct: 168 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT--SAGT 218 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + A A + A A + V + + V I+ G E GL+ Sbjct: 219 AARTPVARA-TNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLS 277 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN A ++++E + + Sbjct: 278 RLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRHR 316 >gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11] Length = 252 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 18/145 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79 Q N+G + R + + L+ S K S ++ + R+ +E Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNE--EECFA 176 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 A+ TT +A ++ + + ++ G E G+++ + Sbjct: 177 ALKQAKISILTTT-------------LSANSVSYKTVEESSFALVMGNEGAGVSDFAVES 223 Query: 140 SNAIISFPVNPLFPSLNISQAVLLM 164 ++ ++ + SLN++ A ++ Sbjct: 224 ADKLVHIDMPGQAESLNVAVAAGIL 248 >gi|255030658|ref|ZP_05302609.1| hypothetical protein LmonL_18963 [Listeria monocytogenes LO28] Length = 126 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 119 QNVGIIFGRERWGLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ +FG+E GL NEE + P+ SLN+S ++ +E + Sbjct: 54 KDYFFVFGKETTGLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 108 >gi|255017825|ref|ZP_05289951.1| hypothetical protein LmonF_08965 [Listeria monocytogenes FSL F2-515] Length = 81 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 119 QNVGIIFGRERWGLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ +FG+E GL NEE + P+ SLN+S ++ +E + Sbjct: 9 KDYFFVFGKETTGLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 63 >gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 18/162 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + IL + N+G + R + + R + +SA A +V + Sbjct: 102 IFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTN 161 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E + + V+ G +G++ G E G+ Sbjct: 162 IAQTIEELKKEGMWFVCAA--------------MDGEVMYNLDLKG-PIGLVIGAEGEGV 206 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + S P+ SLN S A ++ +E + ++ Sbjct: 207 SRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIVRQRML 248 >gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1] Length = 269 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 12/86 (13%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIALS 140 R R+ + + A I L G+ +FG E GL A + Sbjct: 171 RERDTAAVLDSISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATSARA 230 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166 + + P++ SLN++ A + ++ Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256 >gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str. N16961] gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457] gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2] gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286] gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33] gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9] gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236] gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10] gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101] gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1] gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757] gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457] gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2] gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9] gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33] gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286] gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236] gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10] gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101] gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1] gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757] Length = 170 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHYVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486] Length = 272 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R L L Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDAWPKGLE 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R L P E A ++E + V ++ G E GL+ + + ++ + Sbjct: 187 AV-----REAGFRLLALTPDEKATSIDEAAPHRLERVALMLGAEGDGLSTKALMAADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P++ SLN+ Sbjct: 242 RIPMSHGVDSLNVGA 256 >gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC 29176] Length = 270 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 20/166 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 ++IL + + N+G + R + + R + +SA A +V Sbjct: 121 ILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 180 Query: 74 -FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++E L F+ A + +G +G++ G E G Sbjct: 181 LVKTMEELKEKGLWFVCA---------------DMDGEPMYHLNLTG-PIGLVIGNEGEG 224 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ + + P+ SLN S A ++ +E + I+ + Sbjct: 225 VSRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRIIKGQ 270 >gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter dehalogenans 2CP-1] Length = 256 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 31/191 (16%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A +++L + N+G + R+ + + R + +SA A Sbjct: 87 ARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGSHGVVIPRDRAVGVTPAVAKASAGA 146 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---- 120 ++ V AR N K++ KEA I G+ Sbjct: 147 ---VERCPV------------------ARVTNVAKTLERLKEAGIWSVALAADGERPLGE 185 Query: 121 ------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 ++ G E G+ + P++ SL++S + + ++E Sbjct: 186 VDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAG 245 Query: 175 SSEKNVKEQNT 185 + K+ E Sbjct: 246 TPSKSAVEMRP 256 >gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] Length = 242 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 163 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 222 Query: 160 AVLLMVWE 167 A L +E Sbjct: 223 AAALAFYE 230 >gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis F0405] Length = 181 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA 62 P+L + +G + L D Q N+G + R + L D + + RS Sbjct: 25 EQPELPDQLQGRFLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQG 84 Query: 63 NADCV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + +D + L+ A + ATT A + ++ Sbjct: 85 SHFHIPIWKLDREEL---LERATQSHLAVLATTLSE-------------ASIDYRQLPQT 128 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G++ E A ++ ++ P+ SLN++ A ++++ + Sbjct: 129 DRFILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180 >gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium E980] Length = 254 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ N II G E G++ E ++L++ + P+ SLN+ A ++++ Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 20/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79 + N+G + R + + R + +SA A +V + ++E Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEE 166 Query: 80 AI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L F+ A V+ + +G +G++ G E G+ + Sbjct: 167 LKKEGLWFVCA---------------DMDGQVMYDLNLTG-PIGLVIGNEGSGVGDLVRK 210 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + P+ SLN S A ++ +E + Sbjct: 211 HCDLFAAIPMAGEIDSLNASVAAGVLAYELVRQR 244 >gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor kronotskyensis 2002] Length = 253 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 20/176 (11%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64 + + S + P ++L+ +N G + R+ + + + R+ P + +SA A Sbjct: 86 EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVI-ETRNSCPVTPAVEKASAGA 144 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + RV + ++E +++A A N K V E + Sbjct: 145 VEYMKIARVVNLRRTIEELKEKGIWVFAADA---NGSKPVY---ECDFTI--------PT 190 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E G++ ++ +I P S N S A ++ +E ++ + E Sbjct: 191 CVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3] Length = 289 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 11 SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 P I IL NIG + R+ + + + + ++ S I Sbjct: 129 PNPHPRIAILERVVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIP 188 Query: 70 SVRVFSNLKEA----IADLHFI----YATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +A + + + Y T A R+N + P+ + Sbjct: 189 WTYI-----DAKTWHMEGIDLLHRFGYQTAAMALRHNTIRIDDPR---------LAKLDK 234 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + II G E GL + I S+ I P+ SLN++ A L WE Sbjct: 235 LAIILGSEGPGLEEQTITQSDFTIKIPMAVGVDSLNVAAASALAFWEL 282 >gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 288 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76 N+G + R+ N+ LV P G P +A S I R+ F+ Sbjct: 137 NVGALMRSAAALNV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195 Query: 77 LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++E + DL F A + + L + + + +IFG E GL++ Sbjct: 196 MQE-LRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHID--KLALIFGTEGDGLSHH 252 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I+ ++ + P++ SLN++ + + + Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283 >gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902] Length = 279 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 34/179 (18%) Query: 18 ILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +L Q N+G + R+ V+P G K +SA A + Sbjct: 117 VLDRIQDPGNLGSLLRSALAADVQSVWMGSG----VDPLGG----KVLRASAGALLQLPH 168 Query: 71 VRVFSNLKEAIADLHF-----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 R ++AI DL + AT + + + E + + Sbjct: 169 RRFGPEQEKAIDDLDQALRVLVAQGIQVVATLVPDASGPLPPIPYWE--------LDWTK 220 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E GL A ++ P + SLN++ A + ++ E +V +++ Sbjct: 221 PTALVLGTEGAGLHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRARMVGTQQ 279 >gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12] gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330] gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12] gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1] Length = 254 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ N II G E G++ E ++L++ + P+ SLN+ A ++++ Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 246 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + I+ G E G+ + +I P+ SLN+S A + ++E + + + Sbjct: 190 GPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246 >gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. F] Length = 260 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 29/171 (16%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWP--SEKARSSS 61 +++N +G V++L N G + R+ N L ++ +D + +S Sbjct: 102 EKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANV----LGVIFKKDNQASINNTVIKTS 157 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117 A ++ + V +NL AI DL ++ F S ++ L+++ Sbjct: 158 LGACFYLNLIEV-ANLSYAIKDLQ--------DKYGFWSYVS------NLSDQAQDYNVD 202 Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166 +I G E+ G++++ I ++ I P+ SLN+S A +M++ Sbjct: 203 YANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLF 253 >gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B] Length = 247 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R FNL+ + + + K ++ + I V ++ + Sbjct: 116 SDAGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMAS---IFRVPIY-----FLK 167 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I +NNFK +++ E + + E SG + ++ G E G++ + + +N Sbjct: 168 EDELI-------KNNFKIIVSALEDSKPIKECDLSGDLI-LVIGNEAHGVSQKILERANL 219 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 + P+ SLN A + +E + Sbjct: 220 KVKIPIRDSVDSLNAGVAAGIFAYEMSK 247 >gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 234 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 14/153 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 IIL N+G + R+M F L L++ + K +S A + +++ F N Sbjct: 94 IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVRASMGAFFKL-NIQRFDN 152 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L++ + N S L E++ L + F Q + FG E GL E Sbjct: 153 LQDYKKNF---------PENKIYSFLL-DESSDELGDVKFE-QPFSLAFGNEGAGLPQE- 200 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I + SLN+ A + +++ Sbjct: 201 -YYNENKIFINQSKDVDSLNLPIACSIAMYQSR 232 >gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(low)] gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str. R(high)] Length = 260 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 29/171 (16%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWP--SEKARSSS 61 +++N +G V++L N G + R+ N L ++ +D + +S Sbjct: 102 EKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANV----LGVIFKKDNQVSINNTVIKTS 157 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117 A ++ + V +NL AI DL Y F S ++ L+++ Sbjct: 158 LGACFYLNLIEV-ANLSYAIKDLQEKYG--------FWSYVS------NLSDQAQDYNVD 202 Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166 +I G E+ G++++ I ++ I P+ SLN+S A +M++ Sbjct: 203 YANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLF 253 >gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae B728a] gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 166 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + + A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 E ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165 >gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans ES-2] Length = 258 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 16/154 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N+G + R+ + L +P S K ++ + K A Sbjct: 120 QDPGNLGSMLRSAAAAGCDAVFL-SPACADAWSPKVLRAAMGGHFCLAIYEQQDLFKVAQ 178 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + ATT A N+ + G E GLT E AL+ Sbjct: 179 GYSGKLLATT--------------LQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALAT 224 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ P+ SLN + A + ++E + Sbjct: 225 HPVTIPMPGAVESLNAAAATAICLFEAVRQRRAP 258 >gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC 8239] Length = 257 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 13/161 (8%) Query: 13 KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++LVD Q N+G + R + + ++K S+ + I Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + + L F+ + + +K V++ + E G V I G E G Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++++ +++ + P+ SLN++ A +M++E + S Sbjct: 215 VSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255 >gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length = 310 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ ++ L + N+G + R++ F + + R + A +SA A + Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMP 216 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +NL A+ D + V+ + + + ++ G E Sbjct: 217 VAR-ATNLTRALKDWA----------DRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEG 265 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S A +++ E Sbjct: 266 KGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 345 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61] Length = 345 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 18/166 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67 Q A+ V++L + N+G + R+ +F + +V S A ++ A+ V Sbjct: 192 QAGAQDCVLVLENESNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHV 250 Query: 68 --IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 I + + L + + + T++ K + + + ++ Sbjct: 251 QPITGDNIVNVLDDFRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVL 296 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+E GL + ++ + LNIS A +++ E Sbjct: 297 GQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 345 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 318 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 11/171 (6%) Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +NS + P+ + L N+G V R+ F G + RS+ A Sbjct: 156 AARNSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAH---------GVLLPERRSAGMTAV 206 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 S + L A+A + A + V + ++ ++E + + I+ Sbjct: 207 AWRTSAGTAAKLPIAVA-TNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVL 265 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 G E GL+ +A +S P+ SLN S A +++ E ++ Sbjct: 266 GSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRRRLAG 316 >gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella vaginalis ATCC 14018] gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 227 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 79 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLQDTKLRRA--GLDYHDMAHVVMHPNFE 135 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I N ++FG E + + Sbjct: 136 NLVESMPNSRIIAFTA--------------NATKLYTDIEYKPNDILLFGPEPGDIPDPM 181 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + ++E K Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFEGGK 227 >gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium bifidum S17] gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium bifidum S17] Length = 215 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 27/160 (16%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F+ Sbjct: 67 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFN 123 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134 NL E++ D I A TA A L + ++FG E + + Sbjct: 124 NLVESMPD-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 168 Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN++ + ++E Sbjct: 169 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 208 >gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 245 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82 N G + R ++ + + + A +SA A I +V ++K+AI Sbjct: 110 NFGAIVRTAECTGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKV-DHIKDAIYYLQS 168 Query: 83 -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D+ + AT + + L + +I G E G+ + + + Sbjct: 169 CDVKIVAATEKTDNTIYDVPLT---------------GSHALIMGSEGRGINPSVLKIVD 213 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 P+ SLN+S A ++E + Sbjct: 214 YKAKLPLLGKIESLNVSVATGAFLYEAIRQR 244 >gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis F11] Length = 288 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + P A L E I S + + ++ G E GLT + +S+ + P++ SLN++ Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLNVAT 268 Query: 160 AVLLMVWE 167 A L +E Sbjct: 269 AAALAFYE 276 >gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354] Length = 249 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 P+++L N+G + R+ F+ + + S S++ A + VRV Sbjct: 102 PIVLLDQVTDPHNVGAILRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVV 161 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL A+ DL F + EA + L E I +G V ++ G E GL + Sbjct: 162 -NLARALDDL---------AERGFWRIGLAGEAEMTLAEAIPTG-PVALVLGAEGAGLRH 210 Query: 135 EEIALSNAIISFPVNPLFPSLNISQ 159 +A+ P++ SLN+S Sbjct: 211 NIAGHCDALAKLPISDAIESLNVSN 235 >gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia vitripennis] Length = 1450 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 25/175 (14%) Query: 10 NSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 N+ + V++ L++ +N+G +AR F + QL V+ ++ + S +AD Sbjct: 1293 NNKQDIVVVASLIE--KSQNLGGIARTCEIFGVKQLV-VSNLKQIEDKEFQVLSVSADKW 1349 Query: 68 IDSVRVFSNLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNV 121 I + V + A + D +++ ++ A +N + + Sbjct: 1350 IKIIEV-KSFSLANYLLELKDC-------------GWTLIGAEQTANSVNLYDLKYPKQT 1395 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E+ G+ I L + + + SLN+ + +WE ++ Sbjct: 1396 VLVLGNEKNGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQYQFEP 1450 >gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM 43043] Length = 288 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +L+ + V I G E+ G+ + + + + P++ SLN+S A ++++E + Sbjct: 216 LLHTEVDYTGRVAIAVGSEKHGVDDALLVAATHRVRIPMHGRANSLNVSVAAAVVLYEAV 275 Query: 170 ENS 172 Sbjct: 276 RQR 278 >gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii] Length = 348 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79 N+G + R F + L + ++ + S +A+ + V V L++ Sbjct: 201 PTNLGGLCRTCEVFGASVLVI-GSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 259 Query: 80 AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I TA++ + + P + ++ G ER G+ I Sbjct: 260 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 304 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 + + P + SLN+ + L++WE ++S N Sbjct: 305 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDNKP 348 >gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268] gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268] Length = 260 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 13/168 (7%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ + +IL + Q N+G + R + + L S K S+ + Sbjct: 98 PKKEKPKGDLFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSL 157 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + +++E DL F+ + ++ V A + + +F Sbjct: 158 FRLPF-----SIEE---DLFFLCES---LKSAGVQVFALDLDGKKTHFQAAFQGPSAFLF 206 Query: 126 GRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GLT +E++ + P+ SLN++ + ++++E + Sbjct: 207 GNEGNGLT-KELSQCATEKLLIPMEGKIESLNVATSASIVLYEAVRQR 253 >gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] Length = 310 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 ++ ++ L + N+G + R++ F + + R + A +SA A + Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMP 216 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R +NL A+ D + V+ + + + ++ G E Sbjct: 217 VAR-ATNLTRALKDWA----------DRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEG 265 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + ++S P+ SLN S A +++ E Sbjct: 266 KGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308 >gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 6 PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 +LQ + P +L+ + +N+G + R + + + + + + SA Sbjct: 85 EKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECAGVDGIIIPSHKSAEVNPTVSRVSAG 144 Query: 64 ADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A +I + + +K + ++ A+ R ++ + P Sbjct: 145 AVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKARQSYFNTSIP--------------SP 190 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ + ++ P+ SLN S A L+++E + + Sbjct: 191 TALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEVLRQRL 243 >gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10] Length = 255 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P+ + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPKSADLYNSKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L + I D + + + +I G E G+++ Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKTAKQLPDFEKVSQLALIIGNEAHGVSST 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +LS+ + P+ SLN + A +M++ Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252 >gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419] gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419] Length = 153 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 27/171 (15%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L P + N G + R L + ++ P S++ + I +V Sbjct: 1 MNELRIALYQPDIPGNTGTILRLAACLGLA-VDIIEPAGFDLSDRNLKRA--GMDYIAAV 57 Query: 72 --------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 F + + + A+T + + P + + Sbjct: 58 TMTRHVNWERFETWRSS-TGRRLVLASTKAAVPYTRFMFKPDDI---------------L 101 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + GRE G+ ++ ++A I P+ P SLNI+ A ++V E + + Sbjct: 102 LLGRESAGVPDQVHERADARILIPMAPGQRSLNIAMAGAMIVGEAIRQTDA 152 >gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus CCSD1] Length = 98 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A E + V + G E G++ + + ++ P+ SLN S A ++++ Sbjct: 29 NAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIY 88 Query: 167 EC 168 + Sbjct: 89 QV 90 >gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 239 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 19/151 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + + N G + R F + + ++ +S A I + V SNL Sbjct: 95 LDEIEDPRNFGAIIRTANAFGVDGIIYKKYHQASINDLVIKTSMGAINYIHMIEV-SNLS 153 Query: 79 EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 AI +L ++YAT+ E++ I G E G++ Sbjct: 154 NAIKNLQNEGFWVYATS--------------LLKSQSYEKVDYANKSVFIVGNESKGVSP 199 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ + + SLN+ A +++ Sbjct: 200 LILKNADQSVRIDMFGDVQSLNVGVATGIIL 230 >gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length = 270 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 13/151 (8%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84 EN+G + R + L P +A S ++ R L E L Sbjct: 130 ENLGSIFRNAAGMGV-DAVLFGSGCADPLYRRAVRVSMGHALLVPFAR----LPEWPKSL 184 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTNEEIALSNA 142 + + R+ + P + L + I + V ++ G E GLT+ + S+ Sbjct: 185 YRL-----RDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDL 239 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN++ A L +E + Sbjct: 240 RVRIPMANGTDSLNVATAAALAFYERARLAP 270 >gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367] gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367] Length = 255 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 +L + N+G + R + + + R + +S A + RV Sbjct: 108 VLDGVEDPHNLGSILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLV 167 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + ++E +++ T + A + +I G E G++ Sbjct: 168 NTVRELKDRGVWVFGT---------------DMAGTDYRDWDAKGASALIIGNEGKGISR 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +++ P+ SLN S A L++++ + Sbjct: 213 LLKETVDQMLTIPMVGEVQSLNASVAAGLLMYQGFSSR 250 >gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 245 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 25/154 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81 N G + R + + + P+ G ++ +SA A I +V ++K+A+ Sbjct: 109 NFGAIIRTAVCTGVDAIII--PKSGGAPVTDDTVKTSAGAIFNIPICKV-DHIKDALFYL 165 Query: 82 --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + + AT E + ++ G E G+T + L Sbjct: 166 QGSGVQVVAAT---------------EKTEDSIYDLDYTTPTALVMGSEGKGVTPGVLKL 210 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN+S A ++E + I Sbjct: 211 VDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244 >gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC 5463] Length = 250 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 19/170 (11%) Query: 7 QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q + K P ++IL + N+G + R+ + + + + +S A Sbjct: 92 QFDDEGKEPFLLILDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAI 151 Query: 66 CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV KE ++I+ T + A + Sbjct: 152 DYVPVARVNNLVQTTKELKKRGYWIFGT---------------DMAGTDYREWNAKGKTV 196 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + I+ P+ SLN S A +++++ + Sbjct: 197 LVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246 >gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides KD131] Length = 261 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 17/152 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A P+++L+ N+G V R+ F R V + + + + A ++ Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126 NL E + L + V EAA+ L E + +G+ V ++ G Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLQGTAGRPVALVLG 216 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 E GL + + ++ P F SLN+S Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248 >gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae UW101] Length = 262 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 18 ILVDPQL--GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ILV L N+G V R NL + + +P+ + SS + + Sbjct: 116 ILVAESLEKPGNVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGC--LFTNQIATG 173 Query: 76 NLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +E IA ++ F AT N S A ++ G E Sbjct: 174 TTEEIIAFLKEKNISFYSAT----LQNSTSYHTQNFTAP-----------TALVVGTEAT 218 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + + I P+ S+N+S A ++++E Sbjct: 219 GLSQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260 >gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666] gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666] Length = 260 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A L+ A +IL Q N+G + R+ F Q+ + S K + Sbjct: 107 PAASGLEAGAAS--VILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGM 164 Query: 63 NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + V A+A L I T++ + P+ A Sbjct: 165 GAHFALQLVEGVE--PAALAALTVPIVVTSSHQGSFLHQQPLPRPCA------------- 209 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G++++ +A S + SLN++ A + ++ Sbjct: 210 -WAMGHEGQGVSDDLMARSALKVRIDQPGGEESLNVAAAAAICLY 253 >gi|330828511|ref|YP_004391463.1| TrmH family RNA methyltransferase [Aeromonas veronii B565] gi|328803647|gb|AEB48846.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565] Length = 150 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 22/153 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 + LV+P+ EN+G V RA + + ++ R E AR + + +++ + + Sbjct: 8 CVGLVNPKSPENVGSVMRAAGCYGVDEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 63 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L I + V+ + A L + + + IFG E L Sbjct: 64 VDDLMAFI------------PQGCVPVVVDLIDGATPLPDYVHP-ERAFYIFGPEDGTLD 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ P +N++ +V ++++ Sbjct: 111 PALYGAVKDVVYVPT---QGCMNLAASVNVILY 140 >gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei F0204] Length = 238 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 18/167 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + KG +I+L + + N+G + R T + + SA A Sbjct: 81 QNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVIFKKTNAVGLTATVAKVSAGAI 140 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V + L++ + T + + N Sbjct: 141 DTVKCASVTNLSRTLEDLQKKGWWAVGT---------------DMDGQDYRSVKYDFNTV 185 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +I G E G++ + ++S P+ SLN + + ++++ Sbjct: 186 LIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIY 232 >gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 287 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVF----- 74 + + N G + R + LV R G + +SA A ++ VRV Sbjct: 142 EIEDPHNFGALLRTADAAGVHG-VLVPERRGCALTATVAKTSAGA---VEHVRVVRIGNI 197 Query: 75 ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKE L F+ A A + + F + L + I+ G E Sbjct: 198 VQEMKRLKE--RGLWFVGADMAGDEDMFHADLT---------------GALCIVIGSEGK 240 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + ++ P++ SLN S A L+++E ++ Sbjct: 241 GLGRLVKETCDFLVRIPMHGAINSLNASVAGALLMYEARRARLLGRA 287 >gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] Length = 276 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61] gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52] Length = 251 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 12/147 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K ++ + + V +L + I Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR + V V + + ++FG E G+ + + L+ Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTTE 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 + P+ SLN++ A ++++ Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 349 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 212 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 270 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 271 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 315 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 316 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 346 >gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 180 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 44/194 (22%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARS 59 P+ +L+ + L P + N G + R A F + L+ P S+++ Sbjct: 18 YPHHMELR-------VALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRSLK 67 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERI 115 + ++ T ++ + A ++L+ + Sbjct: 68 RA--GMDYLEQA-------------------TLTRHADWHHFEDWRLQAKRRIVLLSTKA 106 Query: 116 FS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 +N ++FGRE G+ + ++A + P+ P SLN++ +V + E Sbjct: 107 AIPYTDYRFQENDILLFGRESSGVPDNVHNSADARLLIPMMPGARSLNLAVSVAMTAGEA 166 Query: 169 MENSIVSSEKNVKE 182 + + +E Sbjct: 167 LRQRRDKVDSLRQE 180 >gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum rubarum] Length = 192 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 30/167 (17%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ P++ + Q N+G + R + + L R S +S+ A I Sbjct: 40 KDPLPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTI 99 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---------Q 119 +RV N +S++ ++ + G Sbjct: 100 PLIRV---------------------GNLSQSLMYLRKRGYGVASLALGGSTAYRDPFPA 138 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ G E G++ + S+ +S P+ SLN+S A+ + ++ Sbjct: 139 PLVVVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185 >gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake] Length = 252 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ FN+ + L P PSE +S+ A +I V + Sbjct: 111 HNVGAIMRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAIDMIPIAYVIN-------- 160 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + +T +N L + IIFG E G+ + + Sbjct: 161 ---LVSTIKLFKNAGYWCYGFDTKEGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFL 217 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + SLN+S A + ++ + + + Sbjct: 218 LKIATSNKIDSLNVSNAAAVALYSIFIQNYDQTFQ 252 >gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 345 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 345 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342 >gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas noxia ATCC 43541] Length = 272 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 13/155 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 + +N+G + R + + L +E SA A + R+ + Sbjct: 125 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 177 Query: 83 DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A T R + + +R + ++ G E G++ + + Sbjct: 178 -----IAQTMRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICD 232 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + P+ SLN S A ++++E + Sbjct: 233 FTVRLPMCGKINSLNASAAGAILMYEAQRQRRAKA 267 >gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 223 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 86 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 144 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 145 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 189 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 190 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 220 >gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4] Length = 254 Score = 48.9 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A S+ Sbjct: 172 KL---------KENNVPVYGTALENGVPFGEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 21/147 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82 NIG + R+ F+ ++ + PSE A + ++ A I +R+ SNL +A+ Sbjct: 144 PHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQ 200 Query: 83 DLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TNEEIAL 139 +H + + T + ++ K + E+ + +I G E GL +E A Sbjct: 201 KMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALILGAEGKGLRPKTQETAT 249 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166 S A + P + +LN+S A + ++ Sbjct: 250 SMAHLHMP--GIIKALNVSNAAAVALY 274 >gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476] Length = 276 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 25/173 (14%) Query: 2 TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR- 58 +P P + VI++ N+G + R+ F L+ P E Sbjct: 113 SPLKPCKLSELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAK--ALITTCRHSPHESGVL 170 Query: 59 -SSSANADCVIDSVRVFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIF 116 +++ A +I + V NL E + ++H T+ + + + E Sbjct: 171 AKAASGALEMIHYITV-RNLAETLQEIHQTGFTSFGLDSEGDQPL-----------ETTL 218 Query: 117 SGQNVGIIFGRERWGL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +G + ++ G E GL T E + A+ + SLN+S A + ++ Sbjct: 219 TGSKIALVLGAEGKGLRKKTRETV--C-ALARLDMPGNIKSLNVSNAATIALY 268 >gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c] Length = 366 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 16/151 (10%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + S G ++ L N+G V R+ F + + R + A +SA A + Sbjct: 209 RASDPGLLVALDGVTDPRNLGAVVRSAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARL 268 Query: 69 DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R + L+ + A + L++ + + ++ Sbjct: 269 PVARATNLNRTLRSYADGGLVVVGLAANAD-------------VSLDDLAAATDPIVLVI 315 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 G E GL+ + ++ P+ SLN Sbjct: 316 GSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346 >gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 276 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 269 >gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter fragariae] Length = 218 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 Q II G+E+ G++ + +AL++ + P+ + SLN+S A L+++E ++ Sbjct: 112 QPNCIILGQEQTGISKQALALADH--NIPMMGMVQSLNVSVASALILYEAQRQRQNANMY 169 Query: 179 NVKEQNTPATKGELLSFLDY 198 + + + + + D Sbjct: 170 DSLF-SQLSEEEQQEWLFDR 188 >gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 275 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 11/154 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L EN+G + R + + + +A S ++ R Sbjct: 125 VVVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAAD 184 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLT 133 + + + P A L E Q + ++ G E GLT Sbjct: 185 WPADLLMLQQL---------GFRLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLT 235 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +S+ + P++ SLN++ A L +E Sbjct: 236 AAALRISDLRVRIPMSRGTDSLNVATAAALAFYE 269 >gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330] gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513] gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1] gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1] gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99] gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1] gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1] gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513] gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28] gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 276 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus casseliflavus ATCC 12755] Length = 279 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 21/175 (12%) Query: 8 LQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + + P+ +IL + + N G + R + + + R + +S A Sbjct: 121 LAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVE 180 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I RV +NL +A+ L +I+ T + + VG Sbjct: 181 HIPVARV-TNLTQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVG 224 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +I G E G+ + +++ P+ SLN S A L++++ + +S+ Sbjct: 225 LIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279 >gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062] gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062] Length = 151 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 25/165 (15%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73 P I L P + +N G + R ++T + L+ P S+ A + I+ ++ Sbjct: 2 PDIALYQPDIPQNTGTLLRLAACMDVT-VHLIEPAGFPLSDHALKRA--GMDYIERAKLQ 58 Query: 74 ----FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + +E I TT R P + + I+ GR Sbjct: 59 RHMDWESFREWQLAEKRRLILMTTKGTR--------PYTQFAFKKDDL-------ILMGR 103 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E G+ E L+++ + P+ SLN++ + +++ E + + Sbjct: 104 ESSGVPEEIHQLADSRLLIPMKNGMRSLNMAVSTGMVLGEALRQT 148 >gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 12/165 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + P ++L D Q N+G + R + Q+ + K ++ A Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGA-- 164 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V+V+ A T + + + A + R+ Q ++ G Sbjct: 165 -LARVQVYRYTDRA-------ALLTMLKKTEIPVIGTFIDGAPLRTLRLAPEQPYILVLG 216 Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169 E G++++ AL + I+ PV+ SLN++ A +++ M Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDNHCESLNVAVAGAIVMAHLM 261 >gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 295 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 27/177 (15%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADC 66 L V++L + + N+G + R L L S KA ++ + Sbjct: 138 LPGEDPATVVVLHEVRDPGNVGTLIRTADAAG-ADLVLLTRTSADPYSPKAVRAATGSL- 195 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-------GQ 119 H T A + ++ A A + S Sbjct: 196 -----------------FHLPVLTGAEIGDVLAALAAGGLTAAATSGHASSELFDVELPP 238 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + IFG E GL + + + P+ SLN+ A + ++E + + Sbjct: 239 RIAWIFGNEAHGLDRATLDAAPLRVRIPLAGRAESLNVHTAATVCLFETLRRRRAGA 295 >gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM 20162] Length = 265 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 17/151 (11%) Query: 20 VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79 VD N G V R + L + K +SA + + V+ + Sbjct: 119 VDVAEPGNAGTVIRVADAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQ-ERDASA 177 Query: 80 AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 AIA L + AT A + S+ E +FG E GL Sbjct: 178 AIAQLKESGLTVLATAA---DGEVSLDDADEMLA---------APTAWLFGNEAHGLPRG 225 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A ++ I+ P+ SLN++ A + ++ Sbjct: 226 LQAAADHRIAIPIRGRAESLNLATAASICLY 256 >gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827] Length = 347 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 15/153 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82 N+G + R+ +F + + L + R++ A+ + ID+ + + L + Sbjct: 208 PHNLGGIMRSCAHFGVQGVILQDAGVVESGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQ 267 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + I T++ + + ++ G+ER GL++ + Sbjct: 268 AGYTIVTTSS-------------HKGSQDISKAKLPAKMVLVLGQERDGLSDSVWNEGDM 314 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + SLN+S A +M+ + + + + Sbjct: 315 SLYIGGTGKVESLNVSVATGIMLAQWWQQNKAN 347 >gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1272 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 23/171 (13%) Query: 14 GPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 G +++ LVD N+G +AR+ F + Q +V S++ ++ S A+ ++ Sbjct: 1116 GLIVVASLVD--RAPNLGGLARSSEIFGVRQ-YVVGSLKDVESKEFQALSMTAEKWLNVA 1172 Query: 72 -----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ L+E A + I A + + ++I ++ G Sbjct: 1173 ELKSFQLVDYLREMKAKGYAIVG--AEQTTGSRPI-----------QQIQFPARAVLVLG 1219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 E+ GL I+ + + P + SLN+ + +WE +V E Sbjct: 1220 HEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQHLVGVE 1270 >gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1] Length = 131 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 45 LVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102 +V PR+ +E SA A + +V S+L++++ + K + Sbjct: 6 VVVPRERSAPINEVVVKGSAGAVFHLPIAKV-SSLRDSLEKFQKLGGWILAIEKGGKPIH 64 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162 ++ + ++ G E G + + L++ I + P+ SLN++ A Sbjct: 65 -----------KLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGA 113 Query: 163 LMVWECMENSIVS 175 + +WE + + + Sbjct: 114 IGMWEVSKQNWIE 126 >gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog [Monodelphis domestica] Length = 425 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 10/187 (5%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 P+ +++ +IL + Q N+G V R+ + + + + R+ P S ++ Sbjct: 208 PREDPASRRLWLILEEIQDPRNLGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKASAGT 266 Query: 66 CVIDSVRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V +L + A ++ A T + + + I ++ Sbjct: 267 MEVMDVFATDDLPGLLKVKAQQGWLVAGTVGCPGSVVPQCS--DIPITSCLEFLWDRSTL 324 Query: 123 IIFGRERWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E GL++E L + +++ P P SLN+S A +++ + Sbjct: 325 LVLGNEGSGLSHEIRNLCHILLTILPGRELPPEVESLNVSVAAGILLHSIISQRKGQDSL 384 Query: 179 NVKEQNT 185 +E Sbjct: 385 LKEETRA 391 >gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 169 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 21 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 77 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + + I A TA A L I ++FG E + + Sbjct: 78 DLVESMPDSRIIAFTA--------------HATKLYTDIEYRPTDILLFGPEPGNIPDPM 123 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + ++E + K Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 169 >gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 249 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 13/161 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVIDSVRVFSNL 77 L + Q +NIG + R+ + +V R P + SA A ++ V S Sbjct: 100 LDELQDPQNIGALIRSANAAGV-DAVIVPQRRSAPLGAVVAKISAGA---LEHEPVVS-- 153 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + T + ++ L + ++ G E G+ Sbjct: 154 ------VTNLVRTMKDLKKRGFWIVGADMDGKDLYFDADLTGPLVLVVGAEGKGVGRLVK 207 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ P+ SLN S A ++++E I+S+ K Sbjct: 208 ENCDFLVRIPMLGQVQSLNASVAGGILLYEITRQRIISARK 248 >gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM 13280] Length = 303 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--------FSNL 77 N+G + R+ N+ LV+P P ++ S + R+ + Sbjct: 149 NVGAIFRSAAALNVDG-ILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGSEARAWPYDGF 207 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 E + F + A + ++ S+ P + + I G E GL I Sbjct: 208 -EVLKGAGFTCSAMALSDDSV-SLDDP---------SLLDIERHAIFMGTEGTGLQARTI 256 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 A + I P+ SLN++ A + W+ Sbjct: 257 AGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287 >gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70] Length = 254 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 20/153 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K ++ + + +R NL+E I Sbjct: 116 QDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPIIR--GNLREWIE 173 Query: 83 DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L IY T N +++ + + ++ G E G+ + + Sbjct: 174 RLCEKNVAIYGTALENGEDYRHIKPAR--------------PFALLVGNEGSGVHKKLLQ 219 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ A ++++ + Sbjct: 220 MTTKNLYIPIYGQAESLNVAVAAGILLYHLQDA 252 >gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 274 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 137 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 195 Query: 82 ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + T++ R + F + L + + ++ GRE L Sbjct: 196 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 240 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + SLN+S A +++ E Sbjct: 241 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 271 >gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114] gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11] Length = 152 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 52/168 (30%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I LV+P+ EN+G V RA + + + + + Sbjct: 7 CIGLVNPKTPENVGSVMRAAGCYGVN---------------SVFYTGKRYDIAKQ----- 46 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVL--------APKEAAIVLNERIFSGQ-------- 119 + T ++++ ++ P + V + I + Sbjct: 47 ------------FCTDTKSQHLNLPLIGVEDLRDIVPLDCVPVAVDLIEGAKPLPDYKHP 94 Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E L E I P N +N++ AV ++++ Sbjct: 95 PRAFYIFGPEDGTLKKEITDFCRETIYVPTNGC---MNLAAAVNVIMY 139 >gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila UWE25] gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 43/184 (23%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P++ L+ + +++L N+G + R F + L+ +EK S Sbjct: 94 MPPFS-SLKQAQN--ILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRS 150 Query: 61 SANAD-------------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107 + A ++ F L +ADL Sbjct: 151 ARGAHFKIPLRRGNINELELLAKQGNFQTL---VADLK---------------------- 185 Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + + S + +I G E G + E+ I P++ SLN++ A ++++ Sbjct: 186 -GQILKSTVSKKRKILIMGNEAHG-PSPEVFKFAEPICIPMSGEMESLNVAVAGGILLYA 243 Query: 168 CMEN 171 + Sbjct: 244 LNQM 247 >gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1 homolog, partial [Hydra magnipapillata] Length = 183 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 27/160 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSN----- 76 Q N+G + R+ F + + +VN ++ + S+ A ++ V+S Sbjct: 35 QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGA---MEWASVYSTRDMQR 90 Query: 77 -LKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 LK+ + D + T ++ K + + + ++ G E +G+ Sbjct: 91 LLKDLLNYDWNL-IGTVTKDYTQSK---------VHSCHDVQLSKRNVLVIGNEGFGMNP 140 Query: 135 EEIALSNAIISFPV-NPLFP----SLNISQAVLLMVWECM 169 ++ +++ P N P SLN+S A +++ M Sbjct: 141 LITSICTKLVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 180 >gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans DS-1] gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans DS-1] Length = 175 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 12/165 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L +P + N+G + R + + ++ P G+P + + + L Sbjct: 23 LYEPDIPPNVGTLIRLGACLGVP-VHIIEP-CGFPWSD--------RDLKRAAMDYGALA 72 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + R + +L K ++ G ++ GRE G+ E Sbjct: 73 DVTRHASWAAFAETRTAASRLILLTTKTHNNFMDFTFRPGDT--LLIGRESAGVPAEVHD 130 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 ++A ++ P+ P SLN++ A +++ E + + E+ Sbjct: 131 AADARVTIPMRPPARSLNMAVAASMVLTEALRQTGGFPGAGEIER 175 >gi|313836588|gb|EFS74302.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA2] gi|314928098|gb|EFS91929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL044PA1] gi|314972098|gb|EFT16195.1| RNA methyltransferase, TrmH family [Propionibacterium acnes HL037PA3] Length = 99 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + G E WGL + AL++ ++ P+ SLN+S A ++++ Sbjct: 44 RPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLY 91 >gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 202 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 62 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 113 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 114 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 167 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 168 LNKLADKKIYIPIN--FESLNIASANAIFCH 196 >gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 251 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 111 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 162 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 163 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 217 LNKLADKKIYIPIN--FESLNIASANAIFCH 245 >gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 251 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 111 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 162 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 163 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 217 LNKLADKKIYIPIN--FESLNIASANAIFCH 245 >gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 249 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 109 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 160 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 161 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 215 LNKLADKKIYIPIN--FESLNIASANAIFCH 243 >gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 249 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 109 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 160 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 161 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 215 LNKLADKKIYIPIN--FESLNIASANAIFCH 243 >gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232] gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232] Length = 252 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + Q N+G + R ++F LV + K S+S A + ++ Sbjct: 112 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 163 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135 + I+D F + + + ++ A L + ++ ++ IIFG E G++ + Sbjct: 164 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 217 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L++ I P+N F SLNI+ A + Sbjct: 218 LNKLADKKIYIPIN--FESLNIASANAIFCH 246 >gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4] Length = 787 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 33/218 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD------GWPSEKARSS 60 L + +K V++L + +NIG + R+ F + + VN D S ++ S Sbjct: 499 SLGSGSKPVVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRS 558 Query: 61 SANADCVI---------DSVRVFSNLKEAIADLHFIYATTARNR-----------NNFKS 100 S A D+ V L E + + + TTA N+ FK Sbjct: 559 SRGAVEYCNISQLYLRRDAAEV---LDEFVENGWEVV-TTASNKLIDDNADNGIVEQFKP 614 Query: 101 VLA-PKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 + + K ++ +E R+ + + ++ G E G++ S IS P L SLN+ Sbjct: 615 LKSLTKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNV 674 Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195 SQA +++ EC S +K E+ + S Sbjct: 675 SQASSIILGECWRIQARSLQKPNIERVKQIRAKGIESL 712 >gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30] gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10] Length = 279 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 21/175 (12%) Query: 8 LQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + + P+ +IL + + N G + R + + + R + +S A Sbjct: 121 LAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVE 180 Query: 67 VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I RV +NL +A+ L +I+ T + + VG Sbjct: 181 HIPVARV-TNLTQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVG 224 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 +I G E G+ + +++ P+ SLN S A L++++ + +S+ Sbjct: 225 LIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279 >gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21] gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21] Length = 263 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 19/156 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L P+I+L N+G + R+ FN L + S++ A Sbjct: 110 LDGDPARPIIVLDQVTDPHNVGAIMRSAVAFNAAALVTQDRHAPPEGGVIGKSASGALET 169 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + +RV NL A+ ++ + T F V I Sbjct: 170 LPWIRVV-NLARAMEEMAEAGYWRIGLTGHTDTTF--------------AEALPAGPVAI 214 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 + G E G+ +A+ P++ SLN+S Sbjct: 215 VLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250 >gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1] gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1] Length = 267 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 23/171 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ K V+I+ Q N+G + R+ + + L+ + K ++ + Sbjct: 110 IRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFH 169 Query: 68 IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++V S++ EA+ + + P V + + VG Sbjct: 170 LPVIQV-SDVNEALEYLASIGVTLLVG-------------EPAGGIPVFKANLQT--PVG 213 Query: 123 IIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172 II E G EEI N I+ P+ SLN++ A ++++E + Sbjct: 214 IIVANEGAG-PREEIFRYNHQKITIPMPGCAESLNVAIATSIILYEAIRQR 263 >gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440] gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440] Length = 156 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73 I L +P+ EN+G V RA + VN G E+AR D V D+ RV Sbjct: 8 CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ I DL I + E A L + + + IFG E L Sbjct: 56 HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + + I P +N++ V +++++ M + + Sbjct: 110 SEDVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153 >gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7] Length = 255 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 19/169 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+ L Q N+G + R F ++ + S K ++ A + V+ Sbjct: 101 KELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGA---LAHVK 157 Query: 73 V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +++L+ F+ A +A + L E+ SG + +I G E G Sbjct: 158 IHYTDLE------TFLQAQSA----QAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNG 206 Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSS 176 + A N + P P SLN++ A ++ E + Sbjct: 207 IRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQGNPA 255 >gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 282 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 14/162 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N G + R + + + S K SSA + + S+ Sbjct: 125 IVVLAQTQDPGNAGTMIRIADAAGADAVFICSGSVDVTSPKVVRSSAGSVFHLPSIVNVG 184 Query: 76 NLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L E + + + A + N + + + ++ + IFG E Sbjct: 185 -LPEVLEWARARGMQLLGA----DGNGSVDLFDAADCMVDVD----LAEPTAWIFGNEAH 235 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + + +S P+ SLN+S A + ++ + Sbjct: 236 GFAQFDTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKAR 277 >gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM 2581] Length = 270 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 11/173 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 A +++L N G R+ + + R + R + A + V Sbjct: 109 AAPLLLVLDGITDVHNFGACLRSADAAGAHGVVVPKDRAAPLNATVRKVACGAAESVP-V 167 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +NL ++ AR + V A ++ G E G Sbjct: 168 YRVTNLARSL----------ARMKELGVWVTGTAGEAEASVYDADFTGATALVMGAEGKG 217 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + + ++ P+ SLN+S A + ++E + S + + Sbjct: 218 MRRLTREACDGLVKLPMAGQVASLNVSVATGICLFEAVRQRAASGKSRASSEK 270 >gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM 14237] gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM 14237] Length = 240 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 19/158 (12%) Query: 17 IILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ VD Q N+G + R F + L + + K ++ + ++ + Sbjct: 99 VVAVDTIQDPGNLGTIIRLCDWFGIKDLVCSSDTVDCYNPKVIQATMGSITRVN--VTYL 156 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 NL + + + + + + + ++ G E G++ E Sbjct: 157 NLIDFLEETGL-------------PIYGAFMDGETVYTSQMPVKGI-LVMGNEANGVSAE 202 Query: 136 EIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171 L I+ P SLN++ A +++ E Sbjct: 203 VEKLVQKRIAIPQFGAQTAESLNVATATAILLNEIRRG 240 >gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp. longum JDM301] gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. longum JDM301] Length = 199 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 51 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 107 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 108 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 151 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 152 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 192 >gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB 48] gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB 48] Length = 253 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+ L +N+G + R F + L KA S ++ V + Sbjct: 114 VLALYGIANTDNMGGLMRNAAAFGADAVLLDTTCCDPLYRKAIRVSVGGA--LE-VPHYR 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + T R L+P + V E + ++FG E GL E Sbjct: 171 T-DDMVG--------TLRGLGLTPYGLSP--SGAVTLEEVMPDPRSAVLFGAEGPGLPAE 219 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +A + ++ F SLN++ ++++ Sbjct: 220 LMAAC-RTVRIDMHGGFDSLNVATTSGIVLYRFR 252 >gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621] gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048] Length = 265 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A S+ Sbjct: 183 KL---------KENNVPVYGTALENGVPFGEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 75 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 EA + L ++ +G + II G E G+ + ++ P+ SLN+S A + + Sbjct: 1 EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 59 Query: 166 WECMENSIVSSE 177 +E + V + Sbjct: 60 FEALRQRSVKAA 71 >gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis carolinensis] Length = 406 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 51/195 (26%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-EAI-- 81 N+G + R+ +++ LV K + A + + SNL+ + + Sbjct: 201 PGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLP---IVSNLEWDLVPN 257 Query: 82 ----ADLHFIY----ATTARNRNNFKSV----------------LAPKEAAIVLNERIFS 117 ++ A + L P + Sbjct: 258 YLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHGWVSRSSGLKPWADWDRDLDSQEE 317 Query: 118 GQN-----------------VGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLN 156 G++ V ++ G E G++ E + L+ + P+ P SLN Sbjct: 318 GEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAMRLAQDTGGRRLLIPIAPGVDSLN 377 Query: 157 ISQAVLLMVWECMEN 171 + A ++++E Sbjct: 378 AAMAASILLFEAKRQ 392 >gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces flavogriseus ATCC 33331] Length = 318 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 30/173 (17%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCV 67 N+ ++ L N+G + R++ F +V P +A +A A Sbjct: 165 NNEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGAWKSSA 217 Query: 68 IDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + R +NL A+ + A + + + Sbjct: 218 GTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA-------------DGEHTVEDLEALAG 264 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E GL + + + SLN A ++++E Sbjct: 265 PVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317 >gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19] gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3] Length = 255 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 19/169 (11%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V+ L Q N+G + R F ++ + S K ++ A + V+ Sbjct: 101 KELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGA---LAHVK 157 Query: 73 V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + +++L+ F+ A +A + L E+ SG + +I G E G Sbjct: 158 IHYTDLE------TFLQAQSA----QAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNG 206 Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSS 176 + A N + P P SLN++ A ++ E + Sbjct: 207 IRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQGNPA 255 >gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter nitrofigilis DSM 7299] Length = 230 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 28/164 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANA------DCVI 68 +++L NIG + R + + +V +E +S+ A Sbjct: 86 IVVLDGLTDVGNIGAITRTAYALGVDG--IVAAGVKSLNESGVIRTSSGAMLDMPFSLYP 143 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126 +S+ + + LK+ + I AT L + I V + G Sbjct: 144 NSLDLANELKQ--SGFALIGAT---------------MNGTDLKKYGTITKDDKVALFLG 186 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 E GL+N+ I + +S + F SLN+S A ++++ M+ Sbjct: 187 SEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIYNLMK 230 >gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 20/165 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA---DCVIDSV 71 + L N+G + R++ F +V P R + A +SA A V + Sbjct: 206 VALDGITDPRNLGAIIRSVAAFG-GHGVIV-PQRRSVGLTASAWKTSAGAAARTPVAMAS 263 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + LK F+ + L+E + + + ++ G E G Sbjct: 264 NLTQTLKALKQRGVFVVGLDGGGDMS-------------LHEFTLADRPIVVVVGSEGKG 310 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 L+ + ++S P+ SLN A + ++E + Sbjct: 311 LSRLVTETCDTVVSIPIGASTESLNAGIAASVTLYEIGKLRAAKR 355 >gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena ATCC 35185] Length = 278 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVF----- 74 + + N G + R + LV R G + +SA A ++ VRV Sbjct: 133 EIEDPHNFGALLRTADAAGVHG-VLVPERRGCALTATVAKTSAGA---VEHVRVVRIGNI 188 Query: 75 ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 LKE L F+ A A + + F + L + I+ G E Sbjct: 189 VQEMKRLKE--RGLWFVGADMAGDEDMFHADLT---------------GALCIVIGSEGK 231 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 GL + ++ P++ SLN S A L+++E ++ Sbjct: 232 GLGRLVKETCDFLVRIPMHGAINSLNASVAGALLMYEARRARLLGRA 278 >gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134] Length = 261 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 32/174 (18%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L + IIL Q N+G + R+ + L S K + A+ Sbjct: 107 LPARIEEDCIILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFH 166 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118 ++ V + +LAP+ A +L + Sbjct: 167 LNIVEHC-TID----------------------MLAPRLAVPLLATSSHADAAVFDTDLR 203 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I G E G+++ + + P SLN+ A + ++E + Sbjct: 204 GPVAWIVGNEGAGVSDAWMEHVARTVGIPQPGGLESLNVGAATAICLFEAVRQR 257 >gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 269 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 10/132 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R+ + L ++ S + R+ + + Sbjct: 132 NLGAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARL-DSWPGGL----- 185 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 TT L P AI L + R V ++ G E GL++ +A ++ + Sbjct: 186 ---TTLAEHGFRTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMRVR 242 Query: 146 FPVNPLFPSLNI 157 P+ SLN+ Sbjct: 243 IPMTAGVDSLNV 254 >gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424] gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424] Length = 177 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 24/157 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL Q N+G + R F + L +K S+ ++ ID F Sbjct: 32 VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHID---CFE 88 Query: 76 NLKEAIADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 N+ I L IYAT+ + L E +V IIFG E Sbjct: 89 NID--IKQLVTEMKEFNIYATSLKADKY-------------LEELDNITGHVAIIFGNEG 133 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G+T+E + N ++ + SLN+S A +++ Sbjct: 134 SGVTDEILGEVNNLLKINMPGRAESLNVSIAAGIVMH 170 >gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 267 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 16/160 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 P AP++ A+ ++ LVD N+G + R+ + L++P P +A Sbjct: 109 PGAPEVLAGARRVAVLEGLVD--HT-NLGAIFRSAAALGM-DAVLLSPDCADPLYRRAVK 164 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 +S A + R+ +A+ R+ L P A R Sbjct: 165 TSMGAVFSVPYARL-DPWPDALG--------AVRDAGFELLALTPSGAEDFTAARPHLLP 215 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 ++ G E GLT + +A ++ + P+ SLN+ Sbjct: 216 KAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNVGA 255 >gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 371 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 21/158 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANADCVIDSVRVF--SNL 77 + N+G R+ + L L P G AR+S+ ++ +R+ NL Sbjct: 230 EDPRNLGACIRSSLALGVDILLL--PAKGMCGITPSVARTSAGA----LEKLRICRPDNL 283 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + AI +L +L +V + G E GL Sbjct: 284 EGAIGELKMA----------GYQILGLDADTETNLAGFDFADHVVLAVGGEDVGLPPFIK 333 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +A++ P+ P S N S A+ L ++E I + Sbjct: 334 KQCDAVLRIPMKPEAHSYNASVALSLGLYEYARLRIKA 371 >gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299] gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299] Length = 234 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 20/145 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+ V R+ + L +++ D + K ++ ++ + + +EAI ++ Sbjct: 58 GNVLAVCRSTEALGIGSLGVIS--DAGLAFKQSGRTSGGAVKWTNLEQWRSTEEAIREVK 115 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 AR ++ + E L E +I G ER G+++E L++ + Sbjct: 116 ------ARG---YRVLTTVFEGGHPL-EHYDWTVPTAVILGNERDGVSDEAKRLADGGVY 165 Query: 146 FPVNPLFPSLNIS--------QAVL 162 +N SLN+S AV Sbjct: 166 ISMNGFTESLNVSVASSMIMHHAVQ 190 >gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens] gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Homo sapiens] gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens] gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [synthetic construct] Length = 353 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 27/199 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N G V R+ + + + + R+ P + SSA A V+D VFS Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L+ + T E I+ + ++ G E Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ---SSEIPIMSCLEFLWERPTLLVLGNEGS 261 Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSEKN 179 GL+ E A +++ P P SLN+S A +++ + Sbjct: 262 GLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTEGERRQL 319 Query: 180 VKEQNTPATKGELLSFLDY 198 +++ P+ + E LS + Sbjct: 320 LQDPQEPSARSEGLSMAQH 338 >gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1] Length = 266 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 17/159 (10%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59 P +L A+ VI+ +VDP N+G + R++ LV + P +A Sbjct: 107 PTPTELLTDARRIVILENVVDPT---NVGAIFRSVAGIG-ADAVLVTEQCSDPFYRRAIR 162 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118 S + R+ + AD + + + LA ++ A+ L + Sbjct: 163 VSMGTVLQVPWTRIGN-----WADTRVLLTASG----FQIAALALEDGAVSLRDYAADAP 213 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157 + V ++ G E GLT E I ++ I+ P+ SLN+ Sbjct: 214 EKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLNV 252 >gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM 43183] gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM 43183] Length = 180 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 15/148 (10%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P G N+G + R L PR W E R + + V Sbjct: 43 PLHGANLGTLLRTCDAVGA---CLAVPRLPWVPEALRR----GNTLRHRACVHWTGD--- 92 Query: 82 ADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++ R F+ + + E A+ L + + + G E G+ +E + L Sbjct: 93 -PCAWLL---KRRAEGFRVLGVEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDLL 148 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 +A + P+ SLN++ A L++++ Sbjct: 149 DAAVEIPMVGTGHSLNVAVAGSLVLYKL 176 >gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-] gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe] Length = 301 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 22/154 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-----IDSVRVFSNLKE 79 +N+G V R+ + + L + + S +SA A V + + VF Sbjct: 158 PQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPMVF----- 212 Query: 80 AIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + T +N + P + L + ++ G E+ GL Sbjct: 213 -LRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELM-----NEPKILVLGSEK-GLRTN 265 Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWEC 168 + + +S P + SLN+S A ++++ Sbjct: 266 ILTQCSHYVSIPGGDKYVDSLNVSVAAGILLYSL 299 >gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 17/152 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A P+++L+ N+G V R+ F R V + + + + A ++ Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126 NL E + L + V EAA+ L E +G+ V ++ G Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLEGTAGRPVALVLG 216 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 E GL + + ++ P F SLN+S Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248 >gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5] Length = 260 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 24/163 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70 I+L + + N+G + R + + R + +SA A V + Sbjct: 115 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 174 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + LKE L F+ A + ++ +G++ G E Sbjct: 175 AKTMEELKE--RGLWFVCA----------------DMGGESMYKMNLTGPIGLVVGNEGE 216 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+ + + + P+ SLN S A ++ +E + + Sbjct: 217 GVGRLVKEKCDFVAAIPMKGEIDSLNASVAAGVLAYEIVRQRL 259 >gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063] gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063] Length = 148 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 31/164 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVID--S 70 I L P + +N + R F++ L ++ P + ++ +D + Sbjct: 4 IALYQPDIPQNTAAIIRICACFDI-NLEIIKPCGYFFDKKKLDRIYL------DYLDICN 56 Query: 71 VRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 +R + + + D I TT + N K + +N ++FG+ Sbjct: 57 LRFYESYDDFFSKKKDTRLILLTTKSDSNYTKFLY---------------KKNDTLVFGK 101 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ E ++ +N S NI+ +V ++ E + Sbjct: 102 ESAGVPEEIHNSIQNKLTIKMNKKTRSFNIASSVAIVASEALRQ 145 >gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis DSM 45221] Length = 150 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72 I+L +P++ +N G + R ++L L++P ++K S ++ V Sbjct: 4 IVLFNPEIPQNTGNIGRLCAITE-SRLHLIHPLGFTITDKHLKRSGMDYWHSLDV----H 58 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 N A A + K + A + + G++FG E G Sbjct: 59 HHDNWD----------AFKASP-HAPKRLWLFTTKADHSYWDVEYSNDDGLLFGNEGHGA 107 Query: 133 TN---EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171 + E+ ++ P N SLN+S +V + +E + Sbjct: 108 PDWLHHELE--GQRLTIPHKNDSLRSLNLSTSVGIAAYEALRQ 148 >gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM 14469] Length = 260 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL++ ++A I P++ SLN + + ++++E Sbjct: 203 KGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLNAAVSAAILMFEAKRQR 256 >gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aurantiacus J-10-fl] gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 10/153 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +NIG + R + + R + ++S+ A + V + +NL + I Sbjct: 107 QDPQNIGTLLRTAEAVGCHGVVIPGRRAAEITPAVVNASSGAVEHL-RVAMVTNLNQTIE 165 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L V ++ + + + ++ G E G+ + Sbjct: 166 ELQHA---------GIWVVGLEQDEQAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDF 216 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ P+ SLN + A + ++ Sbjct: 217 LVRLPIVGQVGSLNAAIAGSIAIYHAWRQRHRP 249 >gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 215 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 + L + N+G + R F + L + K S+ + ++ V+ Sbjct: 73 TVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDCFNPKVIQSTMGSITRVN--VVYK 130 Query: 76 NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 NL E + + Y T + ++ ++V ++ G E G+ Sbjct: 131 NLSEFLQSQDIVSYGT--------------FMDGENVYQKRLQQKSV-LVLGNEANGINP 175 Query: 135 EEIALSNAIISFPV---NPLFPSLNISQAVLLMVWECMEN 171 E L + IS P + SLN++ A + + E N Sbjct: 176 EIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215 >gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20] Length = 279 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 20/164 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + + N G + R + + + R + +S A I RV +NL Sbjct: 132 ILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVARV-TNL 190 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +A+ L +I+ T + + VG+I G E G+ Sbjct: 191 TQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVGLIIGNEGRGMG 235 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + +++ P+ SLN S A L++++ + +S+ Sbjct: 236 EGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279 >gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM 20213] Length = 220 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 72 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213 >gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 72 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213 >gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv. aesculi str. 2250] gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv. glycinea str. B076] gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea str. race 4] gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori str. 301020] gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 22/177 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + + A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189 + ++ P +N++ V +++++ M I S + +E+ PA+ Sbjct: 112 DIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165 >gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 283 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 21/165 (12%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 G ++L D + N+G + R F + QL + K ++ + + Sbjct: 136 DRSGLTVVLDDVRDPGNLGTIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGS---LTR 192 Query: 71 VR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V +++++ ++ N + V + + V I+ G E Sbjct: 193 VSIIYTDIDTYLS-------------NEDRPVFGTFMDGENIYAASLPQEGV-IVMGNEA 238 Query: 130 WGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECMEN 171 G++ L I+ P + SLN++ A + + E Sbjct: 239 NGISTSIEELVTKRIAIPRFGITQATESLNVATATAICLSEFKRG 283 >gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814] Length = 265 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 IIL + + N+G + R + + R + +SA A +V Sbjct: 120 IILDNIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNL 179 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++ L F+ A V+ + G +G++ G E G+ Sbjct: 180 VKTMEDLKKKGLWFVCA---------------DMDGDVMYDVNMKG-PIGLVIGNEGEGV 223 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + P+ SLN S A ++ +E + + Sbjct: 224 GRLVKDTCDFTARIPMKGDIDSLNASVAAGVLAYEIVRQRM 264 >gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 231 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L + N+G + R+ + F +V D + + K +S A ++ ++V Sbjct: 91 ILVLENINDPGNLGTLVRSAFAFGFND-VIVEGVDIY-NHKFLQASQGAFFYVNLIKV-K 147 Query: 76 NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N + + LH IY TT R+ E L ++ G E G++ Sbjct: 148 NAVDFLKSLHNYQIYVTTLRSDAFE---YDAVENPKWL----------ALVLGNEANGIS 194 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E L++ +I N F SLN++ A +++ Sbjct: 195 LEMEKLASKLIYIKTN--FESLNVASAGAILL 224 >gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 262 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 Q++N +++L + Q N+G + R +T + L + K S+ A Sbjct: 104 MQVKNQKAPHLVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAV 163 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + + +L E I +L + E +G + Sbjct: 164 FRMPFL-YVEDLPEKIKELQ--------KEGIKTYAAYLRGENAYDEEDYTTG--CAFLI 212 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL +E ++ +I P+ SLN + A ++++E Sbjct: 213 GNEGNGLRDEVADCADCLIRIPMEGEAESLNAAVAAAVLMFEAGRQR 259 >gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus] Length = 1468 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 29/187 (15%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59 A +L S +++ L+D N+G + R F L LV ++ + Sbjct: 1299 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGA--LVLVVGSLHCVKDKQFQH 1354 Query: 60 SSANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLN 112 S +A+ + V V L++ A+ + I TA++ + + P Sbjct: 1355 LSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQ-YCFP-------- 1405 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G ER G+ I + + P + SLN+ + L++WE Sbjct: 1406 ------EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1459 Query: 173 IVSSEKN 179 ++ Sbjct: 1460 LLKHGDT 1466 >gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t. morphotype B'] Length = 262 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E G++ A +++ I P SLN + A ++++E Sbjct: 203 DGSSAIVIGNEATGISEYTRAQADSTIKIPTRDNLESLNAAIATSIVLYEVARQ 256 >gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii yoelii] Length = 227 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 20/144 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIAD 83 NIG + R+ FN++++ +V R+ + S + +R FSN LKE + D Sbjct: 31 NIGNIVRSCVAFNVSEIFVVG-RNKKETSFFGSMGTHGYI---RIRYFSNMIELKEYLND 86 Query: 84 LH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + +Y N++ + + ++ +FG E G++++ I + + Sbjct: 87 NNILLYGCEITNQSI-----------PITKQPFVKNKDTAFLFGNEGTGISDQIIKMCDK 135 Query: 143 IISFPVNPL-FPSLNISQAVLLMV 165 II P SLN+S + +++ Sbjct: 136 IIYIPQYGNGIASLNVSVSCAIIL 159 >gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] Length = 228 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 221 >gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185] gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185] Length = 241 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + + + + K Sbjct: 32 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSG----AAQYHVDTK 79 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ A + + A L + + +FG E + E Sbjct: 80 DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 138 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I +NA++ P +N++ +V ++++ Sbjct: 139 IIDKANAVVYVPT---VGCMNLAASVNVLLY 166 >gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L NIG + R + + + P E +S A + + Sbjct: 85 VLVLSGVTDVGNIGAIIRTAYALGVDGVIACG-VKSLPIEAIVRTSTGALFDMPFA-IEQ 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ + + DL T+ A + + + Q + G E GLT Sbjct: 143 NVLDVLNDLKMSGFTS----------YGADMGATDIRD-VKIKQKRALFLGSEGEGLTQR 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164 + + ++S ++ F SLN+S A ++ Sbjct: 192 VSSKLDELVSIKMSHEFDSLNVSVAGAIL 220 >gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum] gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum] Length = 323 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 25/177 (14%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 ++N G ++L D + N+G + R + + L + + SS ++ Sbjct: 141 PIKNKPFGLSVVLEDCRSLHNVGSIFRTSDGSGFSHIYLCGLTGTPLNTQVTKSSLGSEE 200 Query: 67 VI------DSVRVFSNLKEAIADLHFIYA---TTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++ DS+ V LKE I T+ N +L+ E + Sbjct: 201 MVEWSFSNDSLGVVKKLKE---HNVLIIGIEQTS-----NSVPLLSSLEYIEKMALNNNM 252 Query: 118 G--------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + ++ G E G++ I + I P+ SLN+S ++ + Sbjct: 253 ENNMDNNKYRPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSY 309 >gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa] gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa] Length = 359 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 11/158 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +++L Q N+G + R+ + L+ + K +S A + + S Sbjct: 202 ILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRASRGASF---QIPIVS 258 Query: 76 ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L EA+ D + + N KS P F+ + ++ G E G Sbjct: 259 GSWYHL-EALKDEYQMKMLAGHPDCNDKS--RPVSQLSQGLADCFARVPLCLVLGSEGHG 315 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 L+ + ++S P+ F SLN++ A + ++ Sbjct: 316 LSEKAQREC-ELLSIPMAGEFESLNVAVAGGIFLYMLQ 352 >gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188] gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC 49188] Length = 275 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%) Query: 2 TPYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKAR 58 P + + AK V++L +N+G + R F L++ KA Sbjct: 115 PPSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDDTCCDPLYRKAI 173 Query: 59 SSSANADCVIDSVRVFS--NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113 S A V F ++ E A+ D F ++LA ++ + Sbjct: 174 RVSVGATL---KVPYFHGGSIDEIIAALGDADF-------------NLLALSPSSSLSVY 217 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 ++ G E GL + P++ F SLN++ A + + Sbjct: 218 DATKHGRQALLLGTEGEGLPPRLLEKLQTA-RIPMSTAFDSLNVATASGIAL 268 >gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC 25986] gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC 25986] Length = 199 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 53/200 (26%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L P++ N G + R L LV P +K + V ++ Sbjct: 4 IVLYAPEIPANTGNIGRTCVVTG-AHLHLVEPLGFSLDDKTVRRAGLGYWQNLDVTTYAG 62 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 ++ +A A + +L K G ++FG E G+ E Sbjct: 63 WEDFLARNGLSPA------DERLHLLTKKARRTYAQSTYRDGDY--LVFGSESSGIPEEL 114 Query: 137 IALSNAII-SFPV----------------------------------------NP-LF-- 152 +A + P+ NP + Sbjct: 115 LAAAPERCERIPMLRDCDSLDNAEAWEAHEESLGHTEDDHEAILRQDICGNFVNPDDYRI 174 Query: 153 PSLNISQAVLLMVWECMENS 172 +LN+S + ++++E + + Sbjct: 175 SALNLSNSAAIVLYEALRQT 194 >gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial, partial [Hydra magnipapillata] Length = 227 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 27/160 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSN----- 76 Q N+G + R+ F + + +VN ++ + S+ A ++ V+S Sbjct: 79 QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGA---MEWASVYSTRDMQR 134 Query: 77 -LKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 LK+ + D + T ++ K + + + ++ G E +G+ Sbjct: 135 LLKDLLNYDWNL-IGTVTKDYTQSK---------VHSCHDVQLSKRNVLVIGNEGFGMNP 184 Query: 135 EEIALSNAIISFPV-NPLFP----SLNISQAVLLMVWECM 169 ++ +++ P N P SLN+S A +++ M Sbjct: 185 LITSICTKLVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 224 >gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC BAA-613] Length = 274 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + S + + II G E GL IA + + P++ SLN++ A + W+ Sbjct: 218 LMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDSLNVAAASAVAFWQLGRR 274 >gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227] gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83] gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 3594-74] Length = 345 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79 N+G + R+ +F + +V S A ++ ++ S+ + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica DSM 7489] Length = 245 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 11/148 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N G + R + + + + +SA A + +V +++K+A+ H+ Sbjct: 109 NFGAIIRTAECTGVDGIIIQKKGAAPVTADTIKTSAGAAFKVPIAKV-NHIKDAV---HY 164 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + A+ + ++A E + + II G E G++ + ++ Sbjct: 165 LQASGVK-------IIAASEKTENTIYDVSFKEASAIIMGSEDVGISPSILKAADHTAKL 217 Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIV 174 P+ SLN+S A + ++E + + Sbjct: 218 PLLGEIESLNVSVACGVFLYEAVRQRLA 245 >gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] Length = 242 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 81 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 139 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 140 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 184 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 185 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 235 >gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 219 -EATICERQALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 269 >gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181] Length = 263 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 QN+ I G E G+++ + S+ ++S P+ SLN+ A ++++E + Sbjct: 203 DQNIAFILGNEGRGISSTLLKKSDQMLSIPMIKNVESLNVGVAASIVIYEHARQFLFQQ 261 >gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] Length = 110 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + ++ I+ G E G++ + I P+ SLN S A LM++E Sbjct: 47 LEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHD 106 Query: 175 SSE 177 E Sbjct: 107 VGE 109 >gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074] gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074] gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074] Length = 267 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R + L++PR P +A S A + R+ A Sbjct: 131 ANVGAAFRNAAALGV-DAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGA---- 185 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 R+ + + + + + ++FG E GLT +A ++ + Sbjct: 186 ----GLLGRHGFLTAAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWV 241 Query: 145 SFPVNPLFPSLNI 157 P++ SLN+ Sbjct: 242 RIPMDAGIDSLNV 254 >gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 318 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 31/174 (17%) Query: 10 NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DC 66 ++ + P+I+ L N+G + R++ F +V P +A +A A Sbjct: 164 DNHEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGAWKSS 216 Query: 67 VIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + R +NL A+ + A + +V +E Sbjct: 217 AGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA---DGEHTVEDLEEL----------D 263 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 V I+ G E GL + + + SLN A ++++E Sbjct: 264 GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317 >gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829] gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 272 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + FG E GL+ I + ++ P+ SLN++ + ++ W+ Sbjct: 221 KRCALCFGNESKGLSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFWDM 270 >gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 248 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M P A L++ +G V++L N+GM+ R + +V PR G S Sbjct: 87 MAPLALALESRPRG-VLLLDGITTPANVGMILRTATAAGVEG--IVVPRRGVASIDPLVV 143 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A+A + + A+ R + A +A + Sbjct: 144 KASAGVA---------FRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKRSVYAAELPER 194 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E G+++ +S P+ SLN++ A ++ +E + Sbjct: 195 AAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRR 246 >gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum] Length = 282 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 23/179 (12%) Query: 15 PVIILV-DPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA--DCVIDS 70 P+ +L Q N+G + R T L V D + + R+++ +A +I Sbjct: 116 PLFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPIIAG 175 Query: 71 VRVFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V L++ + + A P E Q V + G E Sbjct: 176 SSVADELQKLYRQGVRLVTA--------DIHGDTPYE-------AFDWRQPVLLWLGSEG 220 Query: 130 WGL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 GL T++ A + P+ SLN++ A ++++E SS + + + Sbjct: 221 HGLRSLTDDFKHRLAARLVIPMEGQVESLNVAVAGAILLYEARRQRRQSSADQLTGETS 279 >gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 287 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 57/164 (34%), Gaps = 25/164 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRV 73 I L + N+G + R + + L+ S + ++ A ++ + Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRATMGSIFAMPLLRASE- 193 Query: 74 FSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 E + + + + +++++ + G+ V ++ G E+ Sbjct: 194 ----AEFLTWSKKTAPLVVGSHLKGSVDYRTI-------------AYKGRPVVLLMGNEQ 236 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 GL + + P SLN++ A +M++E + + Sbjct: 237 AGLPDTLAQSCGKLARIPQTGRADSLNLAIATGVMLFEARRHLL 280 >gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma proteobacterium HTCC2207] Length = 231 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 27/163 (16%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADC------VID 69 +L N+G R+ + +V P+D + + + A V + Sbjct: 86 VLDGVTDPHNLGACLRSADGAGVH--AVVVPKDNSVGLTPVVQKVACGAAESVPLVMVTN 143 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 R L++A A ++ A I + ++ G E Sbjct: 144 LTRTLEKLQQAGA---WVVGAAG--------------EAEQFIYDIDLTGPLVLVMGAEG 186 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G+ + + P+ SLN+S A + ++E + Sbjct: 187 KGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229 >gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2] Length = 203 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 42 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 100 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 101 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 145 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 146 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 196 >gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1] Length = 228 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 221 >gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152] Length = 264 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 33/173 (19%) Query: 11 SAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 S K P+I++ + + N+G + R N+ + + NP+ + SS Sbjct: 111 SNKNPLILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVG------ 164 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----------Q 119 VF+N T+ + + KE I + + Sbjct: 165 --CVFTN--------QIAVGTS------EEIITFLKENKISIYAATLQNSNKYHLEDYKK 208 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ + I+ P+ S+N+S A ++++E Sbjct: 209 PSAIVVGTEATGLSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIFEAKRQR 261 >gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341] gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341] gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 170 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSKVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus B316] gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316] Length = 268 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 AK +++L + Q N+G + R+ +T + L + K S+ + + + Sbjct: 116 AKPLILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFI 175 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 ++ E + + N A + + G E G Sbjct: 176 -YVESIPEVLE----------TLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNG 224 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 LT E ++ I P+ S+N + + ++ +E Sbjct: 225 LTKETADAADTYILIPMKGEVESMNAATSSAILTFEASRQR 265 >gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus] gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus] Length = 890 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 27/184 (14%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 A +L S +++ L+D N+G + R F L + ++ + Sbjct: 721 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGAAALVM-GSLQCVRDKQFQHL 777 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113 S +A+ + V V L++ A+ + I TA++ + + P Sbjct: 778 SVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTR-YCFP--------- 827 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G ER G+ I + + P + SLN+ + L++WE + Sbjct: 828 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 882 Query: 174 VSSE 177 + Sbjct: 883 LKQG 886 >gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 287 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 14/151 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83 N+G R+ + LV P P ++ S + R+ + L E A Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPHCADPLYRRSVRVSMGTVFQVPWTRIDHWPALDELHAG 204 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTNEEIALSN 141 + A + SG V ++ G E GL IA ++ Sbjct: 205 GFTVAALALSEDSVS--------LGEFSASPACSGADSRVAVVLGTEGDGLAPRTIAAAD 256 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 A++ P+ SLN++ A + WE S Sbjct: 257 AVVRIPMAGAVDSLNVAAAAAVAFWELRVRS 287 >gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus] Length = 1407 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 27/184 (14%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 A +L S +++ L+D N+G + R F L + ++ + Sbjct: 1238 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGAAALVM-GSLQCVRDKQFQHL 1294 Query: 61 SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113 S +A+ + V V L++ A+ + I TA++ + + P Sbjct: 1295 SVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTR-YCFP--------- 1344 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + ++ G ER G+ I + + P + SLN+ + L++WE + Sbjct: 1345 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 1399 Query: 174 VSSE 177 + Sbjct: 1400 LKQG 1403 >gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16] Length = 251 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K ++ + + V ++ E I Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLP--VVKGDVAEWI- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 R + V V I + ++ G E G+ E + ++ Sbjct: 171 ---------TRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTE 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN++ A ++++ Sbjct: 222 NVYIPIYGQAESLNVAVAAGILLYSLQTAQ 251 >gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium longum DJO10A] gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A] gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68] gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum DJO10A] gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum subsp. longum F8] gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68] gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 220 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 72 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213 >gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium HIMB114] gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium HIMB114] Length = 147 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 19/158 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRV 73 I L P + +N + R L +L ++ P +EK + + Sbjct: 4 IALYQPDIPQNTAAIIRTCACLGL-KLEIIKPAGFVLNEKKLDRIYM-----DYLKDCEI 57 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F H + T +++ + +L + + IF + ++FG E G++ Sbjct: 58 F---------YHESFDTFVKSKKQKRIILFTTKTTNNYTKFIFKKNDT-LLFGSESKGVS 107 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E ++ P+ SLN++ +V + E + Sbjct: 108 EEVHGTIKNKLNIPIKNNTRSLNLATSVAIASSEALRQ 145 >gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586] gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586] Length = 170 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MNDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 223 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 75 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 131 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 132 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 175 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 176 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 216 >gi|328467013|gb|EGF38111.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462] Length = 122 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 13/119 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P + N G +AR N + L L+ P +K + VR+ Sbjct: 5 IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIIYH 61 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L + +A T ++ + + + + + + +FG+E GL Sbjct: 62 DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLP 112 >gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC 6940] Length = 315 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 16/163 (9%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 +IL + N+G V R++ F + + R + A +SA + RV + Sbjct: 166 VILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARVTNV 225 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E + + A + L+ V I+ G E G++ Sbjct: 226 TRTVQEFQQAGYQVVGLDAGGEHT-------------LDTYTGGKDPVVIVIGSEGKGIS 272 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + I+S P+ SLN S A ++ E + Sbjct: 273 RLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315 >gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125] gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125] Length = 251 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 24/153 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR-----VFSN 76 Q N+G + R ++ +V+ + K +S + + ++ Sbjct: 116 QDPGNVGTMIRTCDAAGMSA-VIVSEGSVDIYNSKVVRASQGSIFHLPVIKGDLHGWVDQ 174 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 KEA + ++ T + + I ++ G E G+ E Sbjct: 175 FKEA--GIP-VFGTALEGGSTY--------------TAIEPQARFALLVGNEGEGVEPEL 217 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + ++ + P+ SLN++ A ++++ Sbjct: 218 LDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250 >gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale ATCC 33656] Length = 263 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 11/155 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N+G + R ++ + + + K S+ + + + +L Sbjct: 115 VLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPF-YITDDL 173 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 E I ++ S+ A +R G + G E GL++E Sbjct: 174 PETIE----------YAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIA 223 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++ I P+ SLN + + L+++EC Sbjct: 224 DMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258 >gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 254 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R L + L + K ++ + I VR L E + Sbjct: 118 QDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIPVVR--EELTECVD 175 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L ++ T E A+ ++ +G II G E G+ + +A Sbjct: 176 FLQDQGVPVFGTAL------------DEDAVPYSDIHHTGA-FAIIMGNEGSGIQPQLLA 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ I P+ SLN++ A ++++ Sbjct: 223 MTDQNIIIPILGQAESLNVAVATGIVLY 250 >gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805] Length = 291 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 22/187 (11%) Query: 8 LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64 L + P +L Q N+G + R ++ Q + K S+A A Sbjct: 114 LPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQ-VWMGAGADPLGSKVVRSAAGAI 172 Query: 65 ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNE---R 114 + + L A+ + AR R L P A + E + Sbjct: 173 LTLPLRRFGLTDAQGVEQLATALKE--------ARTRGLQVVATLVPNAATGLQVEPYWQ 224 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + ++ G E GL +A + ++ P SLN++ A + ++ E ++ Sbjct: 225 LDWCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATMT 284 Query: 175 SSEKNVK 181 + + Sbjct: 285 APMQQSG 291 >gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720] Length = 405 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 16/162 (9%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82 +N+G + R + + + + +SA A ++ + L + + Sbjct: 244 PQNVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVR 303 Query: 83 DLHF-IYATTARN--------RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + T++R ++ + L K + + + ++FG E G+ Sbjct: 304 KSGWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVR 363 Query: 134 NEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECME 170 S+ ++ P + + SLN+ A L+V +C E Sbjct: 364 TNIKFRSDYLVGLPKGRLETDEVVDSLNVGVAASLLVSKCFE 405 >gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum ATCC BAA-798] Length = 264 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 10/149 (6%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q +N G + R F + + + R + ++S+ A ++ +V Sbjct: 122 QDPQNFGTLLRTAEVFGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVT-------- 173 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + + + + + + + + + ++ G E G+ + Sbjct: 174 --NLARTASKLKEYGYWVLGLEYDESSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDL 231 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ P SLN + A + ++E ++ Sbjct: 232 LVKIPQAGRIGSLNAAVAGSIALYEIYKS 260 >gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810] gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810] Length = 275 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 24/141 (17%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLKE 79 N+G R+ + LV P+ P ++ S + R+ +L+E Sbjct: 141 NVGACFRSAAAMGV-DAVLVTPQCADPLYRRSIRVSMGTVFQVPWTRIENWPASVHDLQE 199 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIA 138 A ++ A L E AI L++ +N+ ++ G E GL Sbjct: 200 A----GYVVA-----------GLTLGEGAITLDDLAAEDHENLALVLGSEGHGLMGSTDR 244 Query: 139 LSNAIISFPVNPLFPSLNISQ 159 + ++ P+ SLN++ Sbjct: 245 ALDRRVTIPMQHGVDSLNVAA 265 >gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881] Length = 230 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 24/221 (10%) Query: 1 MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55 MTP L +I+ NI + R + + V P++ + Sbjct: 1 MTPERYRRICETLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKN--RAR 58 Query: 56 KARSSSANADCVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 A ++ + + + + E + A A ++ Sbjct: 59 MAAGTAMGSQRWVQVHKRDESTDVIRELQGQGVQVLA--AHLSDDAIPYREVDYT----- 111 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ G E++G+++E ++ + ++ P+ + S N+S A +++ E E Sbjct: 112 ------RPTALLLGTEKFGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIILSEACEQR 165 Query: 173 IVSSEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212 + L + + + G P Sbjct: 166 RAKGFYDQPRVAADRYHELLFRWGYARIARLCDAHGVPYPE 206 >gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627] Length = 345 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTTLPEKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ ++ LNIS A +++ E Sbjct: 311 NDVRVNIDGTGNVAGLNISVATGVLLAEWWRQ 342 >gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC 43183] Length = 270 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 30/167 (17%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S + ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVP 175 Query: 70 SVRVFSNLKEA----IADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 +A ++DL F A T +N + P A + Sbjct: 176 W-----TWLDAPIGRLSDLGFRTAAMALT----DNSIPIDNPALTAE---------PKLA 217 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 II G E GL+ E IA S+ ++ P++ SLN++ A + W+ Sbjct: 218 IIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264 >gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] Length = 283 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 15/158 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68 + +G V++L N+G + R+ F + +V P + ++ A ++ Sbjct: 129 AQEGIVLVLDQITDPHNVGAIMRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELV 186 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + NL A+ +L+ +R L A I Q + ++ G E Sbjct: 187 P-LVLVQNLARALTELN--------DRGFMTVGLD--SAGGEDLAAIQLRQPLALVLGAE 235 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL NA+ + SLN+S A +L ++ Sbjct: 236 GKGLRQLTRETCNAVARLDMPGDIKSLNVSNAAVLALY 273 >gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length = 322 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 19/171 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + +S ++ L + N+G V R++ F + + R + A +SA A Sbjct: 163 MAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAA 222 Query: 66 CVIDSVRVFS---NLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + L + A A + + V + Sbjct: 223 ARLPVARATNLNRTLLDWAKAGVQLVG---------------LDAEGDVSLDDYDGTGPT 267 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I+ G E GL+ ++I+S P+ SLN S A +++ E Sbjct: 268 VIVVGSEGKGLSRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQR 318 >gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans] Length = 246 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64 P+ + A L D N+G + R FN+ L L +P+ S K +S Sbjct: 96 PKPRKIAFKKAFYLDDISDPGNLGTIFRIAAAFNIDCLIL-SPKTCEISSPKVIRASLG- 153 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123 A+ + F + + + + A I L + + Sbjct: 154 ---------------AVYKVPFFFCEMEKLQELKAHIFALDMQGKIPLTNFAPPSEPYIV 198 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G E G+++ + ++ + P+ SLN+S + ++ + Sbjct: 199 ALGNEAKGISSSILKIAEETLCIPMPGEMESLNVSVSSAILAYTL 243 >gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum alkenivorans AK-01] Length = 249 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 17/151 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82 +N G + R + + + + R S +SA A + RV + ++ + + Sbjct: 105 PQNCGALMRTALCAGVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLK 164 Query: 83 D-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D + + AR ++ G E GL + Sbjct: 165 DQGVWFFGLDARASGTVW--------------EADLTGPAAVVVGNEGKGLRPLVRKECD 210 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++S P SLN S A L ++E M Sbjct: 211 QLVSIPQAGPLGSLNASVAGALSMYEVMRQR 241 >gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803] gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803] Length = 291 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 22/188 (11%) Query: 7 QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 L + P +L Q N+G + R ++ Q + K S+A A Sbjct: 113 SLPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQ-VWMGAGADPLGSKVVRSAAGA 171 Query: 65 -------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN----E 113 + L A+ D AR R +AA L Sbjct: 172 LLSMPYQRFGPTDAQGVEQLATALKD--------ARTRGLQVVATLVPDAAAGLPVQPYW 223 Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ + ++ G E GL + + + ++ P SLN++ A + ++ E ++ Sbjct: 224 QLDWCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATM 283 Query: 174 VSSEKNVK 181 + + Sbjct: 284 TAPMQQSG 291 >gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40] gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40] Length = 256 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 L E +G V + G E GL+++ A+ N +S P+ SLN++ L+ ++ Sbjct: 198 LGEEPLTGAKV-FVLGNETEGLSSDVRAICNKHVSIPMLNNVESLNVAVTASLIAFQ 253 >gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei YIT 12066] Length = 254 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ G E G+ + I P+ SLN+S A + ++E + Sbjct: 198 GPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAGIALFEAVRQR 251 >gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 306 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E GL+ E + ++A++S P+ SLN++ A + + Sbjct: 234 ARPTAWWLGNEAHGLSPESLTQADAVVSIPLYGQAESLNVATAAAVCFY 282 >gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 221 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 73 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 129 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I ++FG E + + Sbjct: 130 NLVESMPNSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 175 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + ++E + + Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFAGGQ 221 >gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 252 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 24/158 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74 ++IL + N+G + R + + + R + +SA A I+ V V Sbjct: 105 ILILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGA---IERVPVVQ 161 Query: 75 -SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 SNL AI +L +I+ T + + + + VG+I G E Sbjct: 162 VSNLVNAIKELKERGLWIFGTDMKGTDYRRW---------------DAKGAVGLIIGNEG 206 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G+ + +++ P+ SLN S A L++++ Sbjct: 207 KGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQ 244 >gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145] Length = 248 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K ++L Q N+G + R F + + + K ++ + + V Sbjct: 103 KEINLVLDGVQDPGNLGTIIRTADWFGFSNIICSKNTVDVYNPKVVQATMGS---LARVN 159 Query: 73 V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRE 128 V + +L ++ A PK ++ + I+ + +I G E Sbjct: 160 VSYVDLPA------YLIA-----------QQLPKFGTLLDGKNIYHQDWPEAGFLILGSE 202 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G+++E I+L + ++ P SLN+ A + E S+ Sbjct: 203 GNGISDEIISLLDGSVTIPKLGQTESLNVGIAAAICCSEIKRKSL 247 >gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax borkumensis SK2] Length = 230 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 62/175 (35%), Gaps = 25/175 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 NI + R + + V P++ + A ++ + + + + Sbjct: 30 PHNIAAIVRTCDAVGILDVHAVLPKN--RARMAAGTAMGSQRWVQVHKRDESTD------ 81 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEEIA 138 + R + + A L++ + ++ G E++G+++E + Sbjct: 82 --VI------RELQGQGV--QVLAAHLSDDAIEYRQVDYTRPTALLLGTEKFGVSDEVAS 131 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 + ++ P+ + S N+S A +++ E E + + + A ELL Sbjct: 132 AVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAKGFYD-QPRVAAARYHELL 185 >gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 239 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E+ GL+ + + ++ I+ P+ + S N+S A +++ E ++ Sbjct: 112 APTVLLMGAEKNGLSADGLEAADIHITVPMVGMVESFNVSVAAGIILNEARHQRQIAG 169 >gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304] Length = 284 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +IFG E GL+ +A ++ + P++ SLN++ + + + Sbjct: 231 RLALIFGTEGDGLSRRTLAAADLTVKIPMSHQVDSLNVAASSAVAFY 277 >gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca glomerata] Length = 310 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 12/156 (7%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R+ + L++P P ++ S + R+ A++ L Sbjct: 163 NLGAIFRSAAGLGM-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYARL-DPWPAALSLLV 220 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 L P A+ L+E S + ++ G E GLT + + ++ + Sbjct: 221 --------KHGFMLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRV 272 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 P+ SLN++ + + + V Sbjct: 273 RIPMAHGVDSLNVAATAAIACYVLGRAVTGRAGSAV 308 >gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis DSM 12112] Length = 254 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 20/166 (12%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--- 66 + G +IIL Q NIG + R + N L L S K ++ Sbjct: 102 SELSGDLIILDAIQDPGNIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVN 161 Query: 67 --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + + LKE + I +TA ++ + E I Sbjct: 162 IIYEEKENIIKFLKE--NGYNII--STALSKESIDY-----------REVELKKDKNAYI 206 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 FG E G+++E + +S+ P+ SLN+S A+ + +++ E Sbjct: 207 FGNEGGGVSDEFLEISHQKAIIPIYGKIESLNVSIALGIFLYKMRE 252 >gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 314 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 20/175 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73 +L Q N G + R L + D + + RS++ + +I V + Sbjct: 144 VLSRIQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVEL 202 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123 ++ + + A + ++ + A VL + G+ Sbjct: 203 EEFAEDVKSQGTVVLAA---DGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRPT 259 Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +FG E GL+ EE + + I+ PV SLN+ A + ++ + Sbjct: 260 MWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQHQTQ 314 >gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM 16992] gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM 16992] Length = 221 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V N + Sbjct: 73 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 129 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I ++FG E + + Sbjct: 130 NLVESMPNSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 175 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +A + + P+ P SLN++ + ++E + + Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFAGGQ 221 >gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC 25986] Length = 304 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 21/151 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--------FSNL 77 N+G + R+ N+ LV+P P ++ S + R+ L Sbjct: 150 NVGAIFRSAAALNVDG-ILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEARVWPHDGL 208 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + F A A ++ S+ P + + I G E GL + I Sbjct: 209 A-VLHEAGFSCAAMALTDDSV-SLDDPV---------LQEIDRLAIFMGTEGAGLGAKTI 257 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 A + + P+ SLN++ A + W+ Sbjct: 258 AGCDRAVRIPMAHGVDSLNVAAASAVAFWQL 288 >gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans] Length = 388 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 116 FSGQNVGIIFGRERWGLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECM 169 +G + +I G E G++ E + PV SLN++ A+ L+++E Sbjct: 318 QTGSHSVVIIGGESHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLILYELR 377 Query: 170 ENSI 173 ++ + Sbjct: 378 KHVL 381 >gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] Length = 309 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G + R++ F + + R + A +SA A I R +N Sbjct: 163 VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR-ATN 221 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + D + V+ + + + ++ G E GL+ Sbjct: 222 LTRTLQDWA----------DRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLV 271 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++S P+ SLN S A +++ E Sbjct: 272 RQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307 >gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2] Length = 271 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 25/159 (15%) Query: 17 IILVDPQLGENIGMVARAMW---NFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72 + L + Q N+G + R + NF+L L++P P + K SS A + + Sbjct: 133 VYLHEVQDPGNLGTILRTLAWFDNFSL----LLSPNSVDPFNSKVVRSSMGAIFHVP-IE 187 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + +L +A+ R + + L A +FG E G+ Sbjct: 188 LDVSL-DALQ-----------TRFSRFAYLD---MAGEAVTAPSFSDFDCYLFGNEARGV 232 Query: 133 TNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECME 170 ++ NA + + SLN++ AV + V+E Sbjct: 233 PKAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271 >gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20] Length = 310 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 13/164 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N G + RA + LV + K S+A + + V + L Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVA-L 216 Query: 78 KEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+ LH T A R +F +L + G E GL +E Sbjct: 217 DDAVTALHNAGLTVLAADGRGDF----------DLLEAESLLEAPSAWLLGNEAHGLPSE 266 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ ++A++S P+ SLN++ A + ++ S ++ Sbjct: 267 ALSRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQAQHSGRS 310 >gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 271 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 22/173 (12%) Query: 4 YAPQLQ--NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P +Q + ++L Q N+G + R+ + ++ S + + Sbjct: 103 SKPAVQTCPVLRQTAVLLDRIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAG 162 Query: 62 ANADCVIDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A +++ + N L++ + + ATT + + L Sbjct: 163 MGAHFLLE---IVENVVLEDVMEASEIPVIATTPYTET------TIYDCDLRL------- 206 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 V + G E G+ + ++ + P SLN++ + +E + Sbjct: 207 -PVAWLLGHEGKGIRESLLDKASDRVVVPHQGAMESLNVAACAAVCFFEQVRQ 258 >gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21] gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21] Length = 170 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGDIDDQAQ 155 >gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999] Length = 251 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 37/164 (22%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCV------ID 69 + L + Q N+G + R + F L L +P P + K +S A I Sbjct: 112 VYLHEVQDPGNLGTIIRTLAWFGDVTLLL-SPNSVDPFNAKVVRASMGALFYVPIEQDIS 170 Query: 70 SVRVFSNLKE-AIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ E A D++ I AT+ FK++ +FG Sbjct: 171 LAQLNERFDEFAYLDMNGESIAATS------FKTM-------------------PCYVFG 205 Query: 127 RERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECM 169 E G+ + + A + SLN++ AV + ++E M Sbjct: 206 NEARGVPRDALTQMPATAFTIKGAGNIESLNLASAVNMCMYELM 249 >gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 244 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 23/171 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC 66 +++ K +IL N G + R + +V + P + +SA A Sbjct: 90 IESGKKPLFLILDQLSDARNFGAIIRTAECTGVDG-IIVQKQGSAPVNGDTVKTSAGAVF 148 Query: 67 VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +V ++K+AI + + + AT N + I + V Sbjct: 149 NVPICKV-DHIKDAIFLLQASGIKTVAATEKTESNIY---------------DISLNEGV 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 II G E G+ + + + P+ SLN+S A ++E + Sbjct: 193 AIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243 >gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum NCIMB 41171] gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010] Length = 215 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 27/160 (16%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 67 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 123 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134 NL E++ + I A TA A L + ++FG E + + Sbjct: 124 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 168 Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN++ + ++E Sbjct: 169 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 208 >gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3] gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3] Length = 178 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 21/181 (11%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193 E + ++ ++ P + +N++ V +++++ + S+ + + K + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQVIANRDNKKSVE 167 Query: 194 S 194 Sbjct: 168 G 168 >gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium BAL38] Length = 244 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 21/171 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++ K +IL N G + R + + + + +SA A Sbjct: 90 IETGKKPLFLILDQLSDARNFGAIIRTAECTGVDGIIIQKQGSAPVNGDTVKTSAGAVFN 149 Query: 68 IDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +V ++K+AI + + + AT + I + V Sbjct: 150 VPICKV-DHIKDAIFYLQGSGIKTVAAT----EKTENHIYD-----------INFNEGVA 193 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 II G E G+ + + + P+ SLN+S A ++E + + Sbjct: 194 IIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQRM 244 >gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314] gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 313 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 17/175 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A Q+ G +IL + N+G V R++ F + + R + A +SA Sbjct: 153 ADAAQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGT 212 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + + +KE + + + + NV Sbjct: 213 AARVPVAKETNMTRTIKEFQKNGYQVVGL--------------DAGGDHTLDTYDGTDNV 258 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 I+ G E G++ + I+S P P SLN S A +++ E ++ Sbjct: 259 VIVVGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313 >gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1] Length = 263 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + G E GL++E +++ I P+ SLN + + L+++EC Sbjct: 205 GACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258 >gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629] Length = 263 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G + G E GL++E +++ I P+ SLN + + L+++EC Sbjct: 205 GACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258 >gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 169 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 21 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 78 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 121 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 122 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 162 >gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291] Length = 273 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 102 LAPKEAAIVLNERIFSGQ-----NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 L P +AA L E + V ++ G E GLT + ++ P+ P SLN Sbjct: 197 LTPDDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATHVRARIPMAPGTDSLN 256 Query: 157 ISQAVLLMVWECMEN 171 ++ + + +E + Sbjct: 257 VATSAAIAFYERQRS 271 >gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes] Length = 287 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P NIG + R+ L + K+ SS + + +VRV + E Sbjct: 133 RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRV-PSPGEV 191 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + ++ A R ++ E Q ++ G E GL+N L Sbjct: 192 ---MDWVEA--RRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246 Query: 141 NAIISFPV 148 + +S P+ Sbjct: 247 DYTVSIPM 254 >gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 11/161 (6%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G ++IL Q N+G R+ + + + + +SA A ++ +++ Sbjct: 98 GFILILDSIQDPRNLGACLRSANAAGVHCVVINKNGSAPINSLVHKTSAGA---LNQLKI 154 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 F + +L A + N V+ + + +I II G E GL Sbjct: 155 FQ-----VTNLSRTI--KALQQKNIW-VIGLDGSVNISIYQIDLTIPNAIIMGAEGSGLR 206 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + P+ SLN+S A + ++E ++ Sbjct: 207 RLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEVNRQRLL 247 >gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14] Length = 252 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 27/170 (15%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + + + L D Q N+G + R F + + + K ++ I Sbjct: 99 ARQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IAR 155 Query: 71 VRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 V+V +++L E I L V + E+ S + I+ G E Sbjct: 156 VKVHYTSLPEFIHSL------------GDAPVFGTFLDGENMYEQPLSTNGL-IVMGNEG 202 Query: 130 WGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 G+ E AL N + P +P SLN++ A ++ E + Sbjct: 203 NGIGKEVEALINRKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 249 >gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567] Length = 302 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 20/171 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73 +L Q N G + R L + D + + RS++ + +I V + Sbjct: 132 VLSRIQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVEL 190 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123 ++ + + A + ++ + A VL + G+ Sbjct: 191 EEFAEDVKSQGTVVLAA---DGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRPT 247 Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FG E GL+ EE + + I+ PV SLN+ A + ++ Sbjct: 248 MWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQ 298 >gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM 43160] gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM 43160] Length = 261 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 13/161 (8%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L ++ + L + N G V R + KA SSA + Sbjct: 105 LVDAPPSLTVALAELADPGNAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFH 164 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIF 125 +D VR L E + R R +VLA + + V +F Sbjct: 165 VDVVRGAP-LPELL----------PRLRAAGVTVLAADGGGEAALDELGPELAGPVLWLF 213 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E G+ AL++A + P+ SLN++ A + ++ Sbjct: 214 GNEARGVPAALAALADARVRIPMRGRAESLNLAAAAAICLY 254 >gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 314 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 16/181 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P A L + + V +L D + N G V R + + K +SA Sbjct: 117 PLATALARAPR-LVTVLADIRDPGNAGTVLRTADAAGAQAVVFAGTAVDPYNGKVVRASA 175 Query: 63 NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + +D VR L + IADL + ATT ++ + A Sbjct: 176 GSLFHVDVVRAPDPL-QVIADLRTAGLAVLATTGYGADDLDDLADAGRLAA--------- 225 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 +FG E GL E A + A + P++ SLN++ A + ++ S Sbjct: 226 -PTAWVFGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYASARAQRRPSPP 284 Query: 179 N 179 + Sbjct: 285 H 285 >gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803] Length = 245 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 32/176 (18%) Query: 9 QNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 Q S+ P+ +L V N G + R +T + + + +SA Sbjct: 91 QKSSTTPLFVLLDGITDVR-----NFGAIIRTAECCGVTGIIIQEKGSAPINADTVKTSA 145 Query: 63 NADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A I +V +++K+A+ D+ I AT E + I Sbjct: 146 GAVFNIPICKV-NHIKDAVFHLQTYDIKLIAAT---------------EKTDDVIFDIDL 189 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 Q + II G E G++N + + P+ SLN+S A ++E + I Sbjct: 190 KQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYEAVRQRI 245 >gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84] Length = 153 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 27/169 (15%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L P + N G + R L + ++ P S++ + + +V Sbjct: 1 MTSLRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRA--GMDYLSAV 57 Query: 72 --------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 F + A + A+T A ++ + Sbjct: 58 ALARHVNWERFETWRAA-TGRRLVLAST---------------KAAERYTDFAFREDDIL 101 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +FGRE G+ + ++ I P+ S+N++ +V ++ E + + Sbjct: 102 LFGRESAGVPDHVHETADGRILIPMLEGQRSINLAMSVAMISGEALRQT 150 >gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans] gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 294 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 27/186 (14%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLV---NPRDGWPSEK 56 M A Q N V I VD L N+G + R+ W F L LV P+ P Sbjct: 117 MDASALQFSNFEPKTVSIFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITP--A 174 Query: 57 ARSSSANADCVIDSVRV-----FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAI 109 SS A ++ + V F+ ++ I A + AT K+ ++ K Sbjct: 175 MIKSSCGA---LEHLPVQQFLNFNEFRDKIKAAGGELV-ATCD-PGAAEKAGISAKSLDQ 229 Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVNPL---FPSLNISQAVLLMV 165 E+ VGI+ G E G++ + L + +IS PV SLN+S +++ Sbjct: 230 WTPEK-----PVGIVLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILL 284 Query: 166 WECMEN 171 Sbjct: 285 HHISLQ 290 >gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM 5427] Length = 263 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVRV 73 +L + Q N+G + R F+ + + S K S+ + VI+ Sbjct: 115 VLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIE--EE 172 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + + TTA E + V II G E G++ Sbjct: 173 IDTYMDFLKQKGVTLYTTALIPGAKPIYDVTFE------------EKVAIIIGNEGNGVS 220 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ + P+ SLN + A + ++E Sbjct: 221 ERVKEASDHTVIIPMPGAAESLNAAIATSICMYEITRQ 258 >gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 16/160 (10%) Query: 14 GPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G +LVD Q N+G + R + L + K S+ + I Sbjct: 106 GKRFLLVDAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIP--V 163 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERW 130 + +NL E I L V+ E A L E I + + ++ G E Sbjct: 164 IQANLLEWIGGL----------EEEGVPVIGALLDEHATKL-EDIGPKETLALVVGNEGA 212 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G++ + + + P+ SLN++ A ++++ + Sbjct: 213 GISAPIVERLSERVYIPIYGKSESLNVAVAAGILMYGIRK 252 >gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1] gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1] Length = 173 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 23/174 (13%) Query: 11 SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + + VII L +P+ N+G V RA +N TQ+R +G +A + + Sbjct: 2 TTESTVIIGLHNPKSPTNVGAVMRAAGCYNATQVR----YNGTRYSRAVRFQTDTQNTHE 57 Query: 70 SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + +L +AD + N +FG Sbjct: 58 RIELVEMNDLTADVADNVSVVC-------------VEFAVGATSLPSFNHPDNAVYVFGP 104 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E L E + ++ ++ P + +N++ V +++++ + S+ + + + Sbjct: 105 EDGSLPQELVDKADHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGPIDDHQQ 155 >gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 216 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 27/160 (16%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 68 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 124 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134 NL E++ + I A TA A L + ++FG E + + Sbjct: 125 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 169 Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN++ + ++E Sbjct: 170 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 209 >gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp. FW1012B] Length = 274 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 20/165 (12%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63 +N+ + L Q N+G +AR ++ + L PR A +SA Sbjct: 113 EATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGIIL--PRHEGARLGPGAAKASAG 170 Query: 64 ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +V + L+EA + E Sbjct: 171 TLSRLPVAKVANLSRALEEAAEAGFAVVGAAG-------------EDGAENALAARPEFP 217 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E G+ + P SLN++QA +++ Sbjct: 218 LVLVLGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262 >gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542] gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542] Length = 339 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 22/177 (12%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSA 62 A +L+ A ++ L N+G V R+ F LV P R + A SA Sbjct: 180 AAELEQPA--LIVALDGVTDPRNLGAVLRSAGAFGAHG-VLV-PERRSAGVTASAWKVSA 235 Query: 63 NADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 A + + L E + FI + + + FS Sbjct: 236 GAAARVPVARATNLTRTLLEYKSAGCFIVGLDGGGE-------------VSVGDLAFSVD 282 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++ G E GL+ +AI S P+ SLN A + ++E + + Sbjct: 283 PIVLVVGSEGKGLSRLVRETCDAIASIPIASAVESLNAGVAAGIALYEVAKVRAAEA 339 >gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] Length = 226 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 65 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 123 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 124 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 168 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 169 -EATICERQALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 219 >gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 259 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 15/146 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIA 82 N+G + R FN+T + + +A ++ V NL EA+ Sbjct: 123 PHNVGAIVRTAAAFNVTAIV---TTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALI 179 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 DL R + L + + +++ + I+ G E GL + Sbjct: 180 DLG--------ERGFTRIGLDSEAPVPL--DQVTPAPPLVIVLGAEGKGLRQRTRECCDV 229 Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168 + SLN+S A + ++ Sbjct: 230 MARLDFPGAIKSLNVSNAAAITLYAL 255 >gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group] Length = 298 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%) Query: 123 IIFGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175 ++FG E GL + + I P+ + LN+S +V + ++E Sbjct: 216 LVFGSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYE 275 Query: 176 SEKNVKEQNTPA 187 E A Sbjct: 276 QLHYQPELPEEA 287 >gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168] Length = 233 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++IL Q N+G + R F + + L R +E S+ Sbjct: 73 TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +++ AI L +F + + I II G Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ + S+ P+ SLN++ A ++++ +N Sbjct: 183 NEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227 >gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 233 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++IL Q N+G + R F + + L R +E S+ Sbjct: 73 TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +++ AI L +F + + I II G Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ + S+ P+ SLN++ A ++++ +N Sbjct: 183 NEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227 >gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80] gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52] gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395] gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587] gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2] gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39] gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)] gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226] gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27] gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80] gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52] gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587] gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395] gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39] gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2] gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226] gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395] gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)] gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27] gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4] Length = 170 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14] Length = 1716 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 24/156 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA-- 82 N+ +AR F +L + N S S++A I ++ +L +AI Sbjct: 1569 NLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWIKMEQISRGESLIDAIHHW 1628 Query: 83 ---DLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + + I T+R++ K P II G E G+ E + Sbjct: 1629 KEVEKYHIIGLEQTSRSQCCSK-YRFPD--------------KAVIILGSEGAGIPVEIL 1673 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L + + P L SLN+ + +++WE + Sbjct: 1674 RLVDVCVEIPQFGLVRSLNVHVSGAILLWEYTRQRL 1709 >gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44] Length = 265 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L + V V + + +I G E G+ E + + Sbjct: 183 KL----------KEKNVPVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905] gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905] Length = 254 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R L + L + K ++ + I VR L E + Sbjct: 118 QDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIPVVR--EELTECVD 175 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L ++ T E A+ ++ +G II G E G+ + +A Sbjct: 176 FLQAQGVPVFGTAL------------DEDAVPYSDIQHTGA-FAIIMGNEGSGIQPQLLA 222 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ I P+ SLN++ A ++++ Sbjct: 223 MTDQNIIIPIFGQAESLNVAVATGIVLY 250 >gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M] gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M] Length = 1056 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAI- 81 N+G + R + L + + + S A ++ +VF +NL + I Sbjct: 918 PHNLGAILRTVEACALDGVIMSKKHQVPLNSTVAKISCGA---LEYTKVFLVTNLHQTIL 974 Query: 82 ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + I T + + +F +I ++ II G E G+ + Sbjct: 975 KLKKNQVLIVGTDSNSSQSFH--------------QIPKNSSLAIIVGNEGIGIRHLLKQ 1020 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN+S A LM++ Sbjct: 1021 QCDLLVKIPMYGKINSLNVSVAAALMIY 1048 >gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A] Length = 234 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 15/156 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 +G V++L N+G + R+ F++ +V P + ++ A V+ Sbjct: 82 EGIVLVLDQITDPHNVGAIMRSAAAFSVK--AIVTTARHSPEATGVLAKSASGALEVVPL 139 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+V NL A+ L+ +R L + Q + ++ G E Sbjct: 140 VQV-QNLARALTGLN--------DRGYMTVGLD--STGGENLAAVQLRQPLALVLGAEGK 188 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + + SLN+S A +L ++ Sbjct: 189 GLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALY 224 >gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135] Length = 244 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 13/157 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74 ++IL + +N G + R FN+ L + + R + +S+ A ++ + + Sbjct: 96 ILILDGIEDPQNFGAILRTSEQFNI-DLVITSQRRSAKDNATTLRTSSGASQYVNKL-IV 153 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 N+ I DL +N F + A +N + + +I G E G+ Sbjct: 154 PNINNVIKDL---------KKNGFW-IYASDIKGKAINTIKINDTKIALIMGNEGKGIHK 203 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ ++ P SLN+S + ++++E Sbjct: 204 LIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQ 240 >gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica] gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica] Length = 608 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 29/188 (15%) Query: 1 MTPYAPQLQ--------NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51 M+P P Q + P+++ L N+G + R+ + + Sbjct: 419 MSPITPTFQVTSSVESHRPRRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCA 478 Query: 52 WPSEKARSSSANADC---VIDSVRVFSNLKEAIAD------LHFIYATTARNRNNFKSVL 102 S +S+ A V ++ + ++ + + + + ++ L Sbjct: 479 PLSPAVAKTSSGALEYMPVFENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPL 538 Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV------NPLFPSLN 156 + ++ L + ++ G E G+ + ++ + P N SLN Sbjct: 539 SLRQCGSWL-----DNKPTVLVLGGEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLN 593 Query: 157 ISQAVLLM 164 + A ++ Sbjct: 594 VGVAAGIL 601 >gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS] gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS] Length = 261 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 23/167 (13%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P+L A P ++L Q N G + R+ F TQ+ + + K + Sbjct: 106 PVRPELIPDA--PSVVLDRLQDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGM 163 Query: 63 NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A + + +A+ L + AT++ P Sbjct: 164 GAHFGLRLIEGVE--ADALDALKIPLVATSSHRGEWLHQARLP--------------HPC 207 Query: 122 GIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 + G E G++ A + I P SLN++ A + + Sbjct: 208 AWLMGHEGQGVSAALEARATHHIRIAQPGGEE--SLNVAAAAAICLH 252 >gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3] Length = 265 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G++ E +A S+ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVSQEILAKSDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 173 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 73/175 (41%), Gaps = 19/175 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74 +IL P++ N + R + N +L ++ P D P R ++ + I+ + Sbjct: 4 VILYQPEISPNTANIIRTCFATN-AKLHIIKPTAFDLHPHWLKRKAAGHFLSEIEH-EIH 61 Query: 75 SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +N ++ D + Y T R + + I + + + + ++FG E G Sbjct: 62 ANYEQFFKKYGDKNIYYIT----RYGLSNY-----SQIDWKNELDNNKEIWVMFGTESTG 112 Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 + + + ++N + P+ SLN++ +V ++++E M + + + Q Sbjct: 113 IPKKIMQTKIAN-CLRIPMFAQCRSLNLANSVAIVLYEIMRQNSFPNLSEFESQK 166 >gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93] gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93] Length = 170 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N+S V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLSATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155] gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155] Length = 162 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E AI + + Q + G E+ GL + + + I+ P + SLN++ A +++ Sbjct: 91 EDAIDIADYEHPDQ-ACYLLGNEQAGLAPKVLKRCHGIVKLPG---YFSLNVAVAGSILM 146 Query: 166 W 166 + Sbjct: 147 Y 147 >gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489] gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489] Length = 241 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 17/149 (11%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R F + L + K ++ + ++ V+ +L+ + Sbjct: 108 PGNLGTIIRLCDWFGVANLFCSKQTVDCYNPKTIQATMGSLARVN--IVYGDLEAFLKQT 165 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + V + + F+ Q+ ++ G E G++ L I Sbjct: 166 NL-------------PVYGAFMDGKNVYKEDFTAQSGVLVMGNEANGVSKTVEELITKKI 212 Query: 145 SFP--VNPLFPSLNISQAVLLMVWECMEN 171 S P N SLN++ A +++ E Sbjct: 213 SIPQFGNKTTESLNVATATAILLNEIRRG 241 >gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1] Length = 281 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G +++L + N+G V R+ ++ + L + + A S A + S Sbjct: 132 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 191 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + EA + + A A + + V ++ G E GL Sbjct: 192 SESQMEAFLKTHGYRVA--AMRVEGSRPLFDSDLRG-----------KVAVVLGSEADGL 238 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + S ++ P+ SLN+S + ++ +E + Sbjct: 239 ADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 278 >gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 253 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + S A + RV Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLV 167 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + E +++ T + A + +I G E G++ Sbjct: 168 NTVSELKDRGLWVFGT---------------DMAGEDYRHWDATGATALIIGNEGKGISP 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++++ P+ SLN S A L++++ + Sbjct: 213 LLKKKVDSMLTIPMIGHVQSLNASVAASLLIYQGFSSR 250 >gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5] gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5] Length = 248 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 27/155 (17%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q EN+G V R+ F + + L+ KA +SA A+ Sbjct: 115 QDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAG----------------AVF 158 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRERWGLTNEEI 137 F R + F + P + + E + V ++ G E G+ Sbjct: 159 HCRFFAG--PRLEDIF-HLPYPGQIVSLSAEGKPLAETVFSDPTMLVPGIEGAGIPARWR 215 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 S +S P++ SLN + A ++++ + Sbjct: 216 EQS---VSIPMDAGVESLNAAVATSIVLYHMAQRR 247 >gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus fermentans DSM 20731] Length = 250 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E GL + I+ P+ SLN S A +++++ + I+ + K Sbjct: 189 GPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIVRQRILEARK 248 >gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80] gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80] Length = 170 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 23/169 (13%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 VII L +P+ N+G V RA +N TQ+R +G +A + + + + Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVR----YNGTRYARAVKFQTDTQNSHERIGLV 62 Query: 75 --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L TA + K V + +FG E L Sbjct: 63 QMDDL-------------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 110 PQEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas cellulosilytica DSM 15894] Length = 327 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 7 QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN 63 + S + P+I+ L N+G + R+ F LV P R + A SA Sbjct: 169 AAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHG-VLV-PERRSAGVTASAWKVSAG 226 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A + R +NL A+ +L + ++ E + + + Sbjct: 227 AAAHVPVAR-ATNLARALGELKKAGCFVVGLDGDGDQLV---------GELSLATDPLVV 276 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172 + G E G+ + I S P++ SLN A + ++E ++ Sbjct: 277 VVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQSR 326 >gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis str. Arkansas] Length = 252 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 21/158 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSV---RVFSNLKEA 80 N+G + R+ FN+ + L P PSE +S+ A +I V + + +K Sbjct: 111 HNVGSIIRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLL 168 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++ Y A+ + IIFG E G+ Sbjct: 169 KKAGYWCYGFDAKEGEFLH--------------KTKLDSKKLIIFGSEDKGMRKLTKENC 214 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ ++ SLN+S A + ++ + + + Sbjct: 215 DFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQALQ 252 >gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str. Sapulpa] Length = 218 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 21/158 (13%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSV---RVFSNLKEA 80 N+G + R+ FN+ + L P PSE +S+ A +I V + + +K Sbjct: 77 HNVGSIIRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLL 134 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++ Y A+ + IIFG E G+ Sbjct: 135 KKAGYWCYGFDAKEGEFLH--------------KTKLDSKKLIIFGSEDKGMRKLTKENC 180 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ ++ SLN+S A + ++ + + + Sbjct: 181 DFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQALQ 218 >gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3] Length = 131 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 18/142 (12%) Query: 33 RAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAIADLHFIYA 89 R+ +F + +V S A ++ A+ V I L + I + Sbjct: 2 RSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDRFRKAGYAIVS 60 Query: 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149 T++ N PK + + G+ER GL++ I+ ++ ++ Sbjct: 61 TSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSADLSVAIDGT 106 Query: 150 PLFPSLNISQAVLLMVWECMEN 171 SLN+S A +++ E Sbjct: 107 GNVESLNVSVATGVLLAEWWRQ 128 >gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972] gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972] gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218] Length = 172 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 35/175 (20%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLR--------LVNPRDGWPSEKARSSSANADC 66 VII L +P+ N+G V RA +N TQ+R V + + KAR + + Sbjct: 7 VIIGLSNPKSPTNVGAVMRAAGCYNATQVRYNGTRYNRAVKFQTDTHNSKARIALVEMED 66 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +++ I + + TA + QN +FG Sbjct: 67 L--TADLAPDVE--IVCVELVVGATA-------------------LPQFVHPQNAIYLFG 103 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E L + + ++ ++ P N +N++ V +++++ + ++ + + + Sbjct: 104 PEDGSLPQDVVDQAHHVVYVPTNGC---MNLAATVNVVMYDRLAKTLGTIDDQAQ 155 >gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482] Length = 268 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ + V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S + ++ + + + + F A T + + +L + Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL + IA ++ ++ P+ SLN++ A + W+ Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC 27560] Length = 270 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S + + II G E GL I S+ I P++ SLN++ A + WE + Sbjct: 215 VKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNVAAASAVAFWELGK 270 >gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47] Length = 275 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 G +++L + N+G V R+ ++ + L + + A S A + S Sbjct: 126 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 185 Query: 74 FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + EA + + A A + + V ++ G E GL Sbjct: 186 SESQMEAFLKTHGYRVA--AMRVEGSRPLFDSDLRG-----------KVAVVLGSEADGL 232 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + S ++ P+ SLN+S + ++ +E + Sbjct: 233 ADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 272 >gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017] gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina MBIC11017] Length = 309 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 19/156 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R + + R + + A + RV NL + + L Sbjct: 164 PHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVAKVATGALETLAIARVV-NLNQGLEQL 222 Query: 85 H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +IY + +A + + ++ G E GL+ Sbjct: 223 KKAGFWIYGLST--------------SAPQSIHTVTFTEPTVLVIGAEGPGLSVSTQHHC 268 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + ++S P+ SLN S A + ++E V + Sbjct: 269 DQMVSIPLQGKTASLNASVATGMALYEVYRQRWVET 304 >gi|332993001|gb|AEF03056.1| putative cold-shock RNA methyltransferase [Alteromonas sp. SN2] Length = 136 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 16/93 (17%) Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +LKE + + + A + E A+ L E +N IFG E L Sbjct: 30 VDDLKEVVPENASVVA------------IELVEGALPLPE-FKHPENAMYIFGPEDGSLD 76 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + ++ P + +N++ ++++ Sbjct: 77 KSVLEWCDHVVYIPT---YSCMNLAATANVVLY 106 >gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM 20075] gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus helveticus H10] Length = 250 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + A + ++ G E G+ Sbjct: 169 LKKRGYWIFGT---------------DMAGTDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246 >gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1] gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1] Length = 262 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVN--------GVFYTGRRYELAARSGAV----QYHVDTK 96 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ A + + A L + + +FG E + E Sbjct: 97 DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++A++ P +N++ +V ++++ Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY 183 >gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 285 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 29/50 (58%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +I G E+ G++ + ++ + I+ P+ + SLN+S A +++WE N Sbjct: 235 LILGNEKKGMSVQLQSICDRIVKIPMLGVVNSLNVSCAGSILLWEVTRNR 284 >gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07] Length = 269 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 10/158 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + G +I+L ++ NIG + R + L++ +++ ++ Sbjct: 112 ENRPGDIIVLDGVKIVGNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLRASRG----- 166 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +L + D A+ R+ +VL L E + + ++FG E+ Sbjct: 167 ---YVFSLPIVLTD-RESAASFIRDSGVELAVLD-SHGETPLKEIGNIDRKMTLLFGSEK 221 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 G + L++ +S P+ SLN+S +V + + + Sbjct: 222 GGPSERLRELASTTVSIPMISSTESLNVSVSVGVTLHQ 259 >gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 154 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 31/167 (18%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71 + L P + N G + R A F + L+ P S+++ + ++ Sbjct: 4 RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDVSDRSLKRA--GMDYLEQAAL 58 Query: 72 ------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R F + R +L+ + A + + ++F Sbjct: 59 TRHADWRHFEDW--------------RRQAGRRIVLLSTRAAVPYTDYQFQENDI--LLF 102 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GRE G+ + ++A + P+ P SLN++ +V + E + Sbjct: 103 GRESSGVPDTVHDAADARLLIPMMPGARSLNLAISVAMTAGEALRQR 149 >gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus XylebKG-1] Length = 272 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R+ +A+ + Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-EAWPKALEGV- 188 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 R L P A ++E + V ++ G E GL+ + + ++A + Sbjct: 189 -------REAGFRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN+ Sbjct: 242 RIPMAHGVDSLNVGA 256 >gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118] Length = 253 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 24/154 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K + + I + NL Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPK---EAAIVLNERIFSGQNV--GIIFGRERWGLTNEEI 137 + R+ FK + P E E GQ+ ++ G E G++ E + Sbjct: 171 --------SGWIRH-FKDMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEIL 221 Query: 138 ALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170 +++ + P N SLN++ A ++++ + Sbjct: 222 EMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253 >gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1] Length = 281 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 17/162 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------- 68 +++L + N+G + R+ + + L +A S I Sbjct: 130 IVVLENVMNPTNVGAIFRSAAALGMDAVLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDG 189 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V+ N +E + ++ F A A + ++ ++ E A+ E++ +I G E Sbjct: 190 KKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGTE 239 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 GL + I S+ ++ P++ SLN++ A + W+ Sbjct: 240 GEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 281 >gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp. TrichCH4B] Length = 262 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 25/164 (15%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P +IL+ N+G + R+ + ++ R + + + + A ++ Sbjct: 110 AEIPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 166 Query: 71 -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 +R S+ A+ + ++ L A E +G + + Sbjct: 167 QPYLRMRNLSDTIVALQQMGYLV-------------LGLDGEAEETIEEAVAGRTKEPIA 213 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + + ++ F SLN+S A L ++ Sbjct: 214 LVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257 >gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 260 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 22/159 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFS 75 ++L Q N+G + R+ + Q +P S + + A +++ VF Sbjct: 118 VLLDRIQDPGNLGSILRSAAAAGIRQ-VFCSPGTAAVWSPRVLRAGMGAHFLLE---VFE 173 Query: 76 --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +L++ I + ATT + + V + G E G+ Sbjct: 174 DVSLEKLIETAKIPVIATTPYTKKTIYDFDLNR--------------PVAWLLGHEGRGV 219 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +++ + P SLN++ + +E + Sbjct: 220 DERLMVMASDKLVIPHMGAMESLNVAACAAVCFFEQVRQ 258 >gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 300 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 23/158 (14%) Query: 25 GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLK 78 N G + R+ +F + L L G AR + A+ V D+ + + L+ Sbjct: 160 PHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLR 219 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A F A T + A L +R+ + G E G+ + + Sbjct: 220 QA----GFAVAATLVDGGQ-------DVFATALPQRL------VYVMGAESEGMDRQFAS 262 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +S + L SLN++ A + ++ + Sbjct: 263 ACDLQLSIHGSGLVESLNVASATAVFQAAWRARALTGA 300 >gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426] gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426] Length = 170 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73 VII L +P+ N+G V RA +N TQ+R + + + +S Sbjct: 7 VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++ + DL TA + K V + +FG E L Sbjct: 59 IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 E + ++ ++ P + +N++ V +++++ + S+ + + Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155 >gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis K5] Length = 264 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 21/160 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL D Q N+G + R + + + S K + A ++ ++ Sbjct: 120 CLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALN---IYE 176 Query: 76 --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +++E + + ++AT++ + + + + I G E G+ Sbjct: 177 GLSVQEVLDHVQTPLFATSS--------------HTDTVIYQHDLKKPIAWIMGHEGQGV 222 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 N E+ I+ P SLN++ A L ++E + Sbjct: 223 CN-ELMQCATPIALPQPNGQESLNVAIAGSLCLYETLRQR 261 >gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus] gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus] gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus] Length = 360 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 67/195 (34%), Gaps = 27/195 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N+G V R+ + + + + R+ P + +SA A V+D VFS Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKASAGAMEVMD---VFST 211 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +A A ++ A + + + + ++ G E G Sbjct: 212 DDLAGFLQARARQGWLVA--GTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSG 269 Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVW-----------ECMENSIVSS 176 L+ A +++ P P SLN+S A +++ E ++ Sbjct: 270 LSRAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVERRREQLLHD 329 Query: 177 EKNVKEQNTPATKGE 191 ++ + A + Sbjct: 330 PQDPSASSEAARVAQ 344 >gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705] gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705] Length = 169 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75 P++ N G R T L LV P + + D V F Sbjct: 21 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 77 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131 NL E++ + I A TA A L + ++FG E G Sbjct: 78 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 121 Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + E + P+ P SLN++ + ++E Sbjct: 122 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 162 >gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13] Length = 171 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 39/185 (21%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKAR 58 M P + L P + N G + R A F + L+ P S++A Sbjct: 1 MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRAL 57 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNE 113 + ++ A R+ ++L+ Sbjct: 58 KRA--GMDYLEQA--------------------ALTRHPDWHRFDAWRKNAGRRLVLLST 95 Query: 114 RIFS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +N ++FGRE G++ ++ + P+ SLN++ +V + Sbjct: 96 KAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTG 155 Query: 167 ECMEN 171 E + Sbjct: 156 EALRQ 160 >gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis] Length = 164 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + ++ G ER GL +EE+ L + PV + S N++ A + ++E + Sbjct: 108 RKTALVIGNERTGLDDEELKLVDDCTEIPVWGMPHSYNVATATAMAMYEYCKQ 160 >gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583] gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583] Length = 276 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 27/159 (16%) Query: 16 VIILVDPQLGENIGMVARAMWNF--NLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSV 71 V+++ N+G + R+ F L+ P E +++ A +ID + Sbjct: 129 VVVMDQITDPHNVGAIMRSAVAFKAG----ALITTHRHSPQESGVLAKAASGALEMIDYI 184 Query: 72 RVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V NL EA+ +LH + + + K + E +GQ + +I G E Sbjct: 185 TV-RNLAEALKELHKADFISFGLDSEGGKPL-----------EIALTGQKIALILGAEGK 232 Query: 131 GL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL T E + A+ + SLN+S A + ++ Sbjct: 233 GLRKKTRETV--C-ALARLDMPGNIKSLNVSNAATIALY 268 >gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum ferrodiazotrophum] Length = 259 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 12/166 (7%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + + A P++ + Q N+G + R + + + R S+ + Sbjct: 99 LDDFLEASPGIAPSPLVAVDGVQDPRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKT 158 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 SA A + VR+ + ++ + R +A + + Sbjct: 159 SAGALFTLPLVRIGN-----LSG-------SLRQLKKEGYAIAALDLSGDPLPEGPLPGP 206 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ G E G+T + L++ P+ SLN+S A + ++ Sbjct: 207 LVLVVGAEEKGVTRPVLDLADWRFRLPMKGKVQSLNLSVAAGIFLY 252 >gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter gallaeciensis 2.10] Length = 290 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 N+G + R+ + ++ R + + + + A ++ NL + I Sbjct: 152 PHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALERQPYLRMRNLADTIV 208 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L R + E I G V ++ G E GL + + Sbjct: 209 ELQ-------RMGFLVLGLDGEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDH 261 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ F SLN+S A + ++ Sbjct: 262 LVKIDAAGGFGSLNVSNAAAIALY 285 >gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral taxon 078 str. F0262] Length = 250 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G++ + S P+ SLN S A ++ +E + + + + Sbjct: 191 GPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLAYEIVRQRLSAVGR 250 >gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 11/156 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 + L + N+G V R++ F + + R + A +SA A + R +N Sbjct: 178 VALDNISDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAR-ATN 236 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L + D N ++ + I+ G E GL+ Sbjct: 237 LTRTLKDWA----------NQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLV 286 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++++S P+ SLN S A +++ E Sbjct: 287 RETCDSVLSIPMAGPVESLNASVAAGVVLSEIARQR 322 >gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03] Length = 241 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 11/148 (7%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G R + + + + + A S VI + +NL + L Sbjct: 102 PRNLGACIRCAAVAGVDAMIINKHQCAPLNAVAHKVSVGGAEVI-KLFHVTNLINCLKFL 160 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + ++ E A +I G E G+ + + + I Sbjct: 161 N----------EKNINIYGLSEHADESYHECNFKFATALIMGAEESGIREKTLERCDHKI 210 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172 + N LF S N+S A +++ E Sbjct: 211 NLSGNKLFKSFNVSVATGIILSEANRQR 238 >gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510] Length = 268 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ + V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S + ++ + + + + F A T + + +L + Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL + IA ++ ++ P+ SLN++ A + W+ Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1] Length = 250 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 12/150 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I L Q +N+GM+ R+ N+ + L S +S+ + + + Sbjct: 111 IALDGIQNPQNLGMIIRSCAAGNVDGIILPKKSSAKISPLVIKASSGTLFKLP-IYYCNT 169 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L E DL + + A + + + G E G++ E Sbjct: 170 LDEIFPDLD-----------ADTRIYSLSSHAKTSIYDVVPTEKSIFVLGNESDGVSPEV 218 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L N IS P+ SLN++ L+ + Sbjct: 219 EKLCNDSISIPMQRGVESLNVAVTASLLAF 248 >gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 235 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 15/163 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +LV N G V R + + KA +S + + R Sbjct: 84 VLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNGKAVRASTGSLFHLPVARD---- 139 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGRERWGLT 133 D+ ++A R ++ A + G +FG E GL Sbjct: 140 ----RDVSAVFAAC---REAGLRLVGADGHATDDLDSADLGGALAAPTAWVFGSEAHGLP 192 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + A + + P+ SLN++ A + ++ +S Sbjct: 193 GDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASARAQHRAS 235 >gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis L1-82] gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1] Length = 246 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 34/168 (20%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70 IL + + N+G + R A + A+ + Sbjct: 101 FILDNIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138 Query: 71 VRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 V AI A + + AT ++ + + + G +G++ Sbjct: 139 ATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCADMDGTCMYDLDLKG-PIGLVI 197 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 G E G+ + + S P+ SLN S A ++ +E + + Sbjct: 198 GSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRM 245 >gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185] Length = 255 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 26/158 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R F + + + K ++ I V+V +++L + I Sbjct: 113 QDPGNLGTIVRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYTSLPDFI 169 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 R+ V + E+ + + I+ G E G+ E L N Sbjct: 170 -----------RSLGEDIPVFGTFLNGKNMYEQPLTANGL-IVMGNEGNGIGKEVETLIN 217 Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 RKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 252 >gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL B-30929] gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL B-30929] Length = 256 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 27/172 (15%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 Y Q+ + KG ++L + Q NIG + R L + + K S Sbjct: 100 DYHEQIPDDLKGAWLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQ 159 Query: 63 NAD--------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114 + +++ + F EA Y T ++ + P Sbjct: 160 GSQFHMKLFTGDILEWMAAFK---EA---GVKTYGTELNDQAISYYDITP---------- 203 Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +I G E G+ + + ++ + P+N SLN++ A ++++ Sbjct: 204 ---TKQFALIMGNEGNGVDPKILEKTDQNLYIPMNGEAESLNVAVATGILLF 252 >gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4] Length = 289 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL++E L++ I P+ SLN + + L+++E Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1] Length = 281 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL++E L++ I P+ SLN + + L+++E Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length = 318 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 11/168 (6%) Query: 6 PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 ++S P+ + L N+G V R+ F G + RS+ A Sbjct: 155 QAARDSGNTPLFVALDGVTDPRNLGAVIRSAAAFG---------AQGVLLPERRSAGMTA 205 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 S + L A+A + A V + + ++ + + ++ Sbjct: 206 VAWRTSAGTAAKLPIAVA-TNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVV 264 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ +A +S P+ SLN S A +++ E Sbjct: 265 LGSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312 >gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82] Length = 281 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + G E GL++E L++ I P+ SLN + + L+++E Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279 >gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 19/153 (12%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A P+++L+ N+G V R+ F R V + + + + A ++ Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIF 125 NL E T + + ++ + A + +G+ V ++ Sbjct: 166 QPYLRVGNLGE----------TMEKLKAMGYILVGLEGEASMTLAEGLEGTAGRPVALVL 215 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158 G E GL + + ++ P F SLN+S Sbjct: 216 GAEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248 >gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str. 86/8/59] gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str. 292] gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A] gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 276 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 269 >gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1] Length = 240 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 A + E + + + ++FG E GL+ E A + P++ S N+S + L ++ Sbjct: 136 ATHMLEELPVDRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYS 195 Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFL 196 + + + A E + F Sbjct: 196 VTTRRRAAIGR-AGDLEPGALAIERVRFY 223 >gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4] Length = 531 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 20/167 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFS 75 +L + +N+G + R FN+ + + N + A SS+ A VI+ Sbjct: 377 VLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRT---E 433 Query: 76 NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +++ + + T+ + N + L +I Q +I G E +G Sbjct: 434 SIEGFLKSSQRNGWNVVGTSLDDLNENQPCLD--------INQIKLDQPTILILGNEGFG 485 Query: 132 LTNEEIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSS 176 L + + N I V + SLN+S +++ + + + Sbjct: 486 LKPSVLEICNKTIKI-VGGNYKIDSLNVSVTSGILIHTLLSSGTLPK 531 >gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Puniceispirillum marinum IMCC1322] Length = 312 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 21/149 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRV 73 +I+L N+G + R+ F ++ + P E ++ A I +RV Sbjct: 169 IIMLDQISDPRNVGAILRSARAFGCD--AIITTQRHAPEENGALARTATGALEHIPIIRV 226 Query: 74 FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL E++ D A A + + + I+ G E Sbjct: 227 V-NLARAVESLQDHDITVAGLAGDGTMD-------------VGALADFPRLAIMLGAEGP 272 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159 GL + ++ + P SLN+S Sbjct: 273 GLRRLSREHCDHLVRIDIAPDADSLNVSI 301 >gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10] gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens MLS10] Length = 251 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 59/151 (39%), Gaps = 21/151 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R +T + + + + K S+ + I ++ +L+EA+ Sbjct: 116 QDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFHIPVQKM--DLEEAVE 173 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 ++ T+ + + + L P++ +I G E G+ + Sbjct: 174 ICKEANVPVFGTS--LQGSTFNALEPQD-------------TFALIMGNEGSGVRARLLE 218 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 +++ + P+ SLN++ A ++++ Sbjct: 219 MTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249 >gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58] Length = 295 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 14/162 (8%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64 +L K P+I +L N+G + R+ FN + R + S++ A Sbjct: 135 KLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGA-VITTIRHSPTESGVLAKSASGA 193 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I +++ +NL + + +LH + + + + + E+ F+G + ++ Sbjct: 194 LELIPYIQI-TNLADTLGELHKLGFFSVGLDSEGPAPI----------EQTFTGAKIALV 242 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + +A+ + SLN+S A + ++ Sbjct: 243 LGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284 >gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor owensensis OL] Length = 253 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75 ++L +N G + R+ + + + +SA A + RV + Sbjct: 97 VLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNL 156 Query: 76 --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++E +++A A + K V E + I+ G E G++ Sbjct: 157 RRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PACIVIGSEGKGIS 202 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ +I P S N S A ++ +E ++ + E Sbjct: 203 RLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_39H11] Length = 232 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 14/150 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G R + L + W S+ +I + + + Sbjct: 95 QYQTNVGFCIRVAEVSGASGLIVTG---EWTSDDRHR-------IIRAAMRTNRFMPVVF 144 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A ++ VLA ++ +V +I G E G++ E + ++ Sbjct: 145 GCDELAAL----KSWKGRVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLEAADQ 200 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ PS N+ + ++ E + Sbjct: 201 TIRIPMAGFTPSYNLQAPMAVVAVEALRQR 230 >gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique HTCC1062] gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 247 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 19/148 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRVFSNLKEA 80 NIG + R+ +F++ L +V R K +A+ + + + S LK Sbjct: 108 PRNIGSLIRSASSFHIDGL-IVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNL 166 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++Y AR +F I ++FG E +G+ + Sbjct: 167 REKNFWVYGFDARGEKDF--------------TEIKWEGKNVLLFGSEGFGMREHTGKYT 212 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + +N SLNIS + ++ Sbjct: 213 DFFVKIDINKDVESLNISNSAAIVFHHL 240 >gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232] gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 233 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++IL Q N+G + R F + + L R +E S+ Sbjct: 73 TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +++ AI L +F + + I II G Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ + S+ P+ SLN++ A ++++ +N Sbjct: 183 NEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227 >gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 355 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 26/167 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------- 68 V++L Q N+G + R+ F+ L+ ++KA +S A + Sbjct: 199 VLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPIVSGNW 258 Query: 69 DSVRVFSNLKEAIADLHFIY-----ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + ++V + AT+ + + E A + E+ + + Sbjct: 259 NHLKVLE------HEFQMKLLAGHPATSTQKPKLVSKLSV--EFAQSVAEK-----PLCL 305 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 I G E GL+ + + ++S P+ F SLN+S A + ++ Sbjct: 306 ILGSEGNGLSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQS 351 >gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis BS107] Length = 290 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82 N+G + R+ + ++ R + + + + A ++ NL + I Sbjct: 152 PHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALERQPYLRMRNLADTIV 208 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L R + E I G V ++ G E GL + + Sbjct: 209 ELQ-------RMGFLVLGLDGEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDH 261 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 ++ F SLN+S A + ++ Sbjct: 262 LVKIDAAGGFGSLNVSNAAAIALY 285 >gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC 4571] Length = 250 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 18/150 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R+ + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++I+ T + A + ++ G E G+ Sbjct: 169 LKKRGYWIFGT---------------DMAGTDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ P+ SLN S A +++++ Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAY 243 >gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 358 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 22/162 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N+G V R+ + + + + R+ P + +SA A V+D VF+ Sbjct: 185 VLEGLQDPRNLGAVMRSAHFLGVDR-VITSQRNSCPLTPVVSKASAGAMEVMD---VFAT 240 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L+ + T + + I + ++ G E Sbjct: 241 PDLPGFLQAKAQQGWLVVGTVG---CPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGS 297 Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVW 166 GL+ E A +++ P P SLN+S A +++ Sbjct: 298 GLSQEVFASCQLLLTILPRRHLP--PGLESLNVSVATGILLH 337 >gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758] Length = 249 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 20/161 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L + + N+G + R + + R + +SA A +V Sbjct: 104 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAAGLTATVAKTSAGALNYTPVAKVTNL 163 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E L F+ A + V+ R+ +G++ G E G+ Sbjct: 164 VKTMEELKEKGLWFVCA------DMDGDVMY----------RVNLKGPIGLVIGNEGEGV 207 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + + P+ SLN S A ++ +E + + Sbjct: 208 GRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQRM 248 >gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3] Length = 295 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 14/162 (8%) Query: 7 QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64 +L K P+I +L N+G + R+ FN + R + S++ A Sbjct: 135 KLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGA-VITTIRHSPTESGVLAKSASGA 193 Query: 65 DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 +I +++ +NL + + +LH + + + + + E+ F+G + ++ Sbjct: 194 LELIPYIQI-TNLADTLGELHKLGFFSVGLDSEGPAPI----------EQTFTGAKIALV 242 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + +A+ + SLN+S A + ++ Sbjct: 243 LGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284 >gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2] Length = 340 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G R L LV+P P +A S + R+ ++ IA L Sbjct: 206 NVGSAFRNAAALGL-DAVLVSPTCADPLYRRAVRVSMGTVFQVPWTRI-PEWEKGIAGLK 263 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 + + E AI L+E + +N+ ++FG E G+T E AL + + Sbjct: 264 AA--------GYVLAGMTLGEGAITLDELVAEDHENLALVFGTEGHGITPETDALLDRRV 315 Query: 145 SFPVNPLFPSLNISQ 159 + P+ SLN++ Sbjct: 316 TIPMMGGVDSLNVTA 330 >gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2] Length = 240 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 21/149 (14%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ F++ + L P+D P+E + + +A + + +NL+ + L Sbjct: 108 NIGAIIRSSAAFDIDAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165 Query: 86 ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +I T + F +++ S + ++FG E G+ + Sbjct: 166 KHGFWIIGLTGSANDYF-------------TDKLISD-KMALVFGSEDKGIRRLVEETCD 211 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170 + ++ SLN+S A ++ + Sbjct: 212 YLAKILISKRVESLNVSNAASIIFHSLHK 240 >gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1] gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1] Length = 242 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 10/160 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q+++ V+IL Q N G + R+ + Q+ +++ + + + +SA Sbjct: 83 QMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVY 142 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ +V +NL AI DL +N F + ++ I+ G Sbjct: 143 DMNISKV-TNLSNAIKDLQ---------KNGFWIYSTHLNSESNDMRKVDFANRTAIVIG 192 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E G+++ + S+ + P S N + A L+++ Sbjct: 193 NEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILY 232 >gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 251 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78 Q N+G + R F + + + K ++ A + V+V L Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 167 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E++AD+ +Y T + ++ S + I+ G E G++ E Sbjct: 168 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 211 Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173 L N + P +P SLN++ A ++ E + Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250 >gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 239 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +++ V+IL + + N G + R F + + ++ +S A Sbjct: 84 IKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIYKKHHQASINDLVIKTSMGAINY 143 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + V +NL I +L ++YAT+ + E++ Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATSLLKSQPY--------------EKVDYANKTVF 188 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I G E G++ + ++ I + SLN+ A +++ Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 + + + P ++L+ +N G + R+ + + + +SA A Sbjct: 86 EARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAI 145 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + RV + ++E +++A A + K V E + Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PTC 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ ++ +I P S N S A ++ +E ++ + E Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGE 246 >gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078 str. F0262] Length = 248 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 11/150 (7%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + + + S K S+ + + R+ +LKE IA Sbjct: 105 QDPGNLGTIFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPF-RIVPDLKETIA 163 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L R +L E A + + G E GL+ E ++ Sbjct: 164 ELKKKG-----VRCFASHLLG--EKAHYDCDFRSP---TAFLIGNEGRGLSPELSEAADI 213 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN + A ++ +E + Sbjct: 214 RLRIPMKGGVESLNAAAAAAILSYETLRQR 243 >gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 252 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 27/169 (15%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + + L D Q N+G + R F + + + K ++ I V Sbjct: 100 RQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARV 156 Query: 72 RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 +V +++L E I L V + E+ S + I+ G E Sbjct: 157 KVHYTSLPEFIHSL------------GDAPVFGTFLDGENMYEQPLSTNGL-IVMGNEGN 203 Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 G+ E AL N + P +P SLN++ A ++ E + Sbjct: 204 GIGKEVEALINRKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 249 >gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 166 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D + D+ ++ Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E ++ P +N++ V ++++ Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLY 140 >gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis] Length = 327 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 10/173 (5%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NI V R + ++ +K+R+ S ++ +D + + N E Sbjct: 143 GNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWLD-IEQWDNTWE----CF 197 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 + R+R +V + +++ I+ G E G++ E + S+ S Sbjct: 198 EVL----RSRGYRIAVTHVGNDTVSVHDM-DWTLPTAIVLGNEHRGISGEALKFSDIKCS 252 Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198 P+ + S N+S A + + + + I + + +L + Sbjct: 253 IPMTGMVDSFNVSVAAGIFMHAAVHDRISRMGSHGDLRPKECQILAAEFYLRH 305 >gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268] Length = 249 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++G++ G E G++ + S P+ SLN S A ++ +E + ++ Sbjct: 191 GSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAYEIVRQRLLQ 247 >gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM 16841] Length = 284 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL++E L++ I P+ SLN + + L+++E Sbjct: 213 GATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLNAAISASLLMYETNRQR 266 >gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length = 275 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150 R++ + P L + + + Q V I+ G E GL + S+ + P++ Sbjct: 193 RDQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSR 252 Query: 151 LFPSLNISQAVLLMVWE 167 SLN++ A L +E Sbjct: 253 GTDSLNVATAAALAFYE 269 >gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora acidiphila DSM 44928] Length = 339 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 10/153 (6%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G V R++ F +V + R++ A + + L A A Sbjct: 197 PRNLGAVMRSVAAFG-GHGVIV--------PERRAAGMTAGAWKAAAGAGARLPVARAG- 246 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + A A + + ++ L+E + + + ++ G E G++ L + + Sbjct: 247 NLTRALEAYKKQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTV 306 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 S P+ SLN A + ++E + Sbjct: 307 SIPIASTTESLNAGVAAGIALYEVNRRRAEARG 339 >gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3] Length = 490 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEA 80 Q EN G R+ F ++ L++ K +SA A V+ +F +LK+ Sbjct: 360 QDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAGA--VL-HAPLFEGPSLKDL 416 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 DL ++ + F G++ G E GL + + + Sbjct: 417 PEDL---------------PIVPLSMEGAPITGFSFPAA-FGLLAGIEGPGLPDAWRSRA 460 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +S PV SLN + A+ + ++ + Sbjct: 461 ---VSIPVTGAVESLNAATAIAVALYAWSQA 488 >gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4] gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4] Length = 276 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 93 RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151 R R + L P+ ++ L R + ++ G E GLT+E I ++ + + Sbjct: 192 RARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAIEAADVAVRVEMVSG 251 Query: 152 FPSLNISQAVLLMVWEC 168 SLN++ A + E Sbjct: 252 VDSLNVATAAAIAFHEV 268 >gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length = 284 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 14/153 (9%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 ENIG + R + L P R S +A V F+ E Sbjct: 144 ENIGSIFRNAAGLGI-DAVLFGAGCADPLYRRCVRVSMGHALLVP-----FARFDEWPRG 197 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 L + R L P AA+ L + VG + G E GL+ +A ++ Sbjct: 198 LDAL-----RAGGFRLISLTPDPAAMPL-AQAVEATKVGFLVGAEGPGLSAHAMAATDVR 251 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 P++ SLN++ A + +E + + + Sbjct: 252 ARIPMSRGTDSLNVATAAAIAFYERARSGTMEA 284 >gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 264 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 13/167 (7%) Query: 8 LQNSAKGPVIILV-DP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 L+ G + I+V + Q N+G + RA +T + + + K S+ + Sbjct: 104 LKAPRNGKLAIMVLETIQDPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSI 163 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 C + V V ++++A +++ + A + ++ NVG + Sbjct: 164 CRMPFVCV-DDIRQACQ----------TMKDSGVRLFAAHLKGMNNYDQEDYTDNVGFLI 212 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GLT+ A+++ + P+ SLN + A ++++E Sbjct: 213 GNEAGGLTDGTAAMADCYVKIPMAGRVESLNAAVAASVLMFEAARQR 259 >gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 317 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 11/167 (6%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 ++ G V+ L + N+G V R++ F + + + RS+S A Sbjct: 157 RAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVI---------PERRSASVTAV 207 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 S + L A A + + A +N ++ V+ + ++ Sbjct: 208 TWRTSAGTAARLPVAKA-TNMVRALKQFQQNGYQ-VVGLDAGGEHTLDTYDGTTPTVVVV 265 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL+ ++ I+S P+ SLN S A +++ E Sbjct: 266 GSEGKGLSRLVGETADTILSIPMADKVESLNASVAAGVVLSEFARQR 312 >gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 155 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 28/163 (17%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 +NS I L +P+ EN+G V RA + + + R Sbjct: 3 KNSQGYSCIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGTRYDH---------------- 46 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-----EAAIVLNERIFSGQNVGI 123 + + ++ K+A D+ I R+ P + A L E + Sbjct: 47 -AAQFCTDTKKAALDIPLIG--VEDLRDIIPVGCVPVAVDLIDDAKPLPEYKHP-KRAFY 102 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 IFG E L + I P +N++ AV ++++ Sbjct: 103 IFGPEDGTLKKDITDFCRETIYVPTKGC---MNLAAAVNVILY 142 >gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469] gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863] gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509] gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli STEC_7v] Length = 345 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US] Length = 255 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 ++L + N+G + R + L +P + K + + + ID ++ Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133 +L I D + V A +A L + + +I G E G++ Sbjct: 171 DLANVITDFQ----------DAAIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +L++ + P+ SLN + A +M++ Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252 >gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 19/160 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL N G + R+ + R + ++A + +V +NL Sbjct: 96 ILDGITDPHNFGALIRSAAAAGCQGVIFAKDRSCPVTGIVEKTAAGTLGYVQLCQV-TNL 154 Query: 78 KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 AI +L ++Y E L E S + ++ G E G+ Sbjct: 155 GRAIEELKKAGVWVYGLAG-------------EEGQSLFEAPLS-APIALVAGSEGRGIR 200 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 L + +I+ P+ SLN+S A + ++E + N + Sbjct: 201 PLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240 >gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio cellulolyticus CD2] Length = 267 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 21/161 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID---SVRV 73 +L Q N+G + R +T +V+ + K S+ + I S + Sbjct: 121 VLDSLQDPGNMGTIIRTADAAGVTG-VIVSKGCVDVYNPKVLRSTMGSLFHIPICYSENI 179 Query: 74 FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 L+E + A + ++N F + N+ II G E G+ Sbjct: 180 LQTLEEMKNKGIRLCAAHLSGSKNYF---------------ELDYKDNIAIIVGNEANGI 224 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ +SN ++ P+ SLN S A L+++E + + Sbjct: 225 SDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLRLRM 265 >gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14] Length = 254 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73 I+L + + N+G + R + + R + +SA A +V Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++E L F+ A + + +G +G++ G E G+ Sbjct: 167 VKTMEELKEKGLWFVCA---------------DMDGEQMYDLNLTG-PIGLVIGNEGEGV 210 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + P+ SLN S A ++ +E + I Sbjct: 211 GRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRISQK 254 >gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1] gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris DX-1] Length = 151 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 I L P + +N G R A N + ++ P G+P+ + +D V + Sbjct: 2 RIALFQPDIPQNTGTTLRFCACLNV---EAHIIEP-AGFPTSDRHFRRSG-MDYLDQVSI 56 Query: 74 FS-----NLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 ++ A I TT R F+ P + ++ G Sbjct: 57 VRHDSWLKFEQWRENAGCRLILLTTKGERPYFEQRYQPTDV---------------LMLG 101 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 RE G+ ++ A ++A + P+ P SLN++ A ++ E + Sbjct: 102 RESAGVPDDVAAAADARVVIPMQPGLRSLNVAMAAAMVTGEALRQ 146 >gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus 4H-3-7-5] Length = 246 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 25/174 (14%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSS 61 P A QL G ++L D + N+G + R F + QL + D + + K ++ Sbjct: 93 PEAAQL--DRSGLTLLLDDVRDPGNLGTIIRLCDWFGIKQLVCSIGTVDCY-NPKVVQAT 149 Query: 62 ANADCVIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + +D +++NL+E + D ++ T + + Sbjct: 150 MGSLTRVD--VIYTNLEEYLENDSREVFGT--------------FMDGTNIYNTSLPAEG 193 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMEN 171 V II G E G++ E A+ + I+ P SLN++ A + + E Sbjct: 194 V-IIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNVATATAICLSEFKRG 246 >gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior] Length = 828 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 13/151 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIADLH 85 N+G +AR F + L V D ++ + S +AD ++ ++V L++ + D Sbjct: 689 NLGGIARTCEIFGVKALV-VANADCVKDKEFQYLSVSADKWLNILQVKPYELQKFLLD-- 745 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAII 144 +N S++ ++ N + + ++ G E+ G+ I L + + Sbjct: 746 --------RKNTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPANFIPLFDKCV 797 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 P + SLN+ + +W+ I+ Sbjct: 798 EIPQVGVTRSLNVHVTAAICIWQYANQHILK 828 >gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 235 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 23/148 (15%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAI- 81 N+G + R + L + + + S A ++ +VF +NL + I Sbjct: 97 PHNLGAILRTVEACALDGVIMSKKNQVPLNSTVAKISCGA---LEYTKVFLVTNLHQTIL 153 Query: 82 ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + I T + + +F +I ++GII G E G+ + Sbjct: 154 KLKKNQVLIVGTDSNSSQSFH--------------QIPKNSSLGIIVGNEGTGIRHLLKK 199 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 + ++ P+ SLN+S A LM++ Sbjct: 200 QCDLLVKIPMYGKINSLNVSVAAALMIY 227 >gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter uraniireducens Rf4] Length = 242 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 21/170 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65 L G +++L Q N+G + R+ + + PRD A +SA A Sbjct: 86 LVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQGVII--PRDRAVGVTATVEKASAGAI 143 Query: 66 CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 I V + L+E F A E+ + + ++ +G V Sbjct: 144 ETIPVAEVTNVAHTLEEL-------------KNAGFWIYGADGESPLSIFDQKLTGA-VV 189 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ G E G+ + ++S P+ SLN S A ++++E + Sbjct: 190 LVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQR 239 >gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17] gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 316 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 17/173 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 E GL+ + ++S P+ SLN S A +++ E E + Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREAS 314 >gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814] Length = 263 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 11/172 (6%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 M +L ++ +++L Q N+G + R +T + + + K S Sbjct: 100 MNHEINELTSAKCPLIMVLDHLQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRS 159 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + + + V +L + I DL TT A + Sbjct: 160 TMGSIYRMPFV-YVEDLGKGIQDLKDKGITT----------YAAHLEGTNSYDEEDLTNP 208 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GL E +++ + P+ SLN + A ++++E Sbjct: 209 CAFLIGNEGNGLRREIADMADCYVKIPMLGQVESLNAAIASSVLMFEAARQR 260 >gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 258 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78 Q N+G + R F + + + K ++ A + V+V L Sbjct: 118 QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 174 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E++AD+ +Y T + ++ S + I+ G E G++ E Sbjct: 175 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 218 Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173 L N + P +P SLN++ A ++ E + Sbjct: 219 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 257 >gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597] Length = 246 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 39/160 (24%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68 Q N+G + R T +V+ + S+ A ++ Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA--LL 167 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + + AI + ATT K + +E + +N ++ G E Sbjct: 168 EEAK-----EAAIP----VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNE 205 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G++ ++ ++ + SLN++ A ++++ Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC 27678] gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1] gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium dentium JCVIHMP022] gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC 27678] gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1] gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium dentium JCVIHMP022] Length = 228 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 25/159 (15%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78 P++ N G R T L LV P + + D V + Sbjct: 80 SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPDFD 136 Query: 79 EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134 + + I A TA A L I ++FG E + + Sbjct: 137 NLVQSMPNSRIIAFTA--------------HATKLYTEIEYKPTDILLFGPEPGDIPDPM 182 Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +A + + P+ P SLN++ + ++E Sbjct: 183 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 221 >gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica SIR-1] Length = 325 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 10/152 (6%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 +++L Q N+G V R F T + R S A SSA A + +V Sbjct: 179 IIVLLDGVQDPHNLGAVIRNAEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQV- 237 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLT 133 +N+ A+ A+ + V + ++E ++ ++ G E G+ Sbjct: 238 TNVARALEQ--------AKASGTWWVVGTVVDEGTPVHEFAQDPPSDMILVLGSEERGMR 289 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + +++ SLN+S A + + Sbjct: 290 RLTRERCDFLVTIARGGSLGSLNVSAAGAVAL 321 >gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25] gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25] Length = 155 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + G E+AR D + D+ +V Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASVF----YTGVRYERAR------DFITDTKKVHH 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E ++ P +N++ V ++++ Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140 >gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975] Length = 316 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + N+G V R++ F + + R + A +SA + RV +N Sbjct: 166 VILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARV-TN 224 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135 + + D V+ + G + V I+ G E G++ Sbjct: 225 VTRTVQDFQ----------KAGYQVVGLDAGGEHTLDTYNGGTDPVVIVIGSEGKGISRL 274 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 +AI+S P+ SLN S A ++ E + Sbjct: 275 VRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQRRAAQ 315 >gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length = 306 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 26 ENIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 ENIG + R L L P ++ S + R D Sbjct: 164 ENIGSIFRNAA--GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRD 221 Query: 84 LHFIYATTARNRNNFKSVLAP--KEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140 L + + R L P E G+ V ++ G E GLT + + Sbjct: 222 LELL-----QRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAA 276 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S P+ SLN++ A + +E + Sbjct: 277 DVRASIPMARGTDSLNVATAAAIAFYEAVR 306 >gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046] Length = 258 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + Q N+G + R+ + Q+ S + + A ++ + Sbjct: 116 TLILENIQDPGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLN---TYE 172 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ AI D+ R + A L ++ + Q I G E G+++ Sbjct: 173 NV--AIEDVL--------ERFEIPVYVTSSHQAESLYQKDLT-QACVWILGNEGQGVSDF 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +A + A+ S P SLN++ A + +E + + Sbjct: 222 ALAHAQAL-SIPQPGGQESLNVAIAGSICFFEMVRQRL 258 >gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce 56'] gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce 56'] Length = 175 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 17/167 (10%) Query: 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65 +L + + + NIG + R +F + ++ L+ +E ++ Sbjct: 15 EELAPLRNDFSVAVCRAKNPFNIGAIIRVAHSFLVREIFLIG------TEPYYERASMG- 67 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ + + E + F+ A AR R + ++ A + + +F Sbjct: 68 -----MQKYETIVECPDEASFLEA--ARGRPL---IGVERDHARRTLWEAPFPRGLVFLF 117 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 G E GL + +I+ P+ + S ++ A + + E Sbjct: 118 GSEDDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164 >gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B] Length = 323 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 23/174 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75 IL N G RA + Q +V PRD + A ++A A + V + Sbjct: 165 ILDGVTDPRNFGACLRAADAAGV-QAVIV-PRDRSARMTPAAAKAAAGAAETVP-VVSVT 221 Query: 76 NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 NL AI +L F+ T V + + G E G Sbjct: 222 NLASAIMELRDNGVFVAGTAGETDTTIYDV--------------AQARAFAWVLGAEGEG 267 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 L + + + P+ SLN+S A + ++E + I + + Sbjct: 268 LRQLTRRRCDVLAAIPMVGSVESLNVSVASGICLFESLRQRIAAGLVQPGSPDE 321 >gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix jacchus] Length = 350 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 20/178 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L Q N G V R + ++ + +SA A V+D VFS Sbjct: 149 VLDGIQDPRNFGAVLRCAHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMD---VFSTD 205 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+ + T V + I + Q ++ G E G Sbjct: 206 DLTGFLQTKAQQGWLVAGTVG---CPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSG 262 Query: 132 LTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 L+ E A +++ P P F SLN+S +++ + + Q Sbjct: 263 LSQEVQASCQLLLTILPRRQLP--PGFESLNVSVVAGILLHSICSQRKGFPAEGERRQ 318 >gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 226 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78 Q N+G + R F + + + K ++ A + V+V L Sbjct: 86 QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 142 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E++AD+ +Y T + ++ S + I+ G E G++ E Sbjct: 143 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 186 Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173 L N + P +P SLN++ A ++ E + Sbjct: 187 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 225 >gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170] Length = 243 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 18/144 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R+ F+ + L+N +EK +S + ++ + V ++LK+ + Sbjct: 108 QDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIEVEINDLKDLL 167 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + + A + + S + + G E G++ LS Sbjct: 168 DKNYKLVLA----------------DMNGKSVDYYKSCDKIILAIGNEANGISKSLKGLS 211 Query: 141 NAIISFPVNPLFPSLNISQAVLLM 164 N +S ++ SLN + A ++ Sbjct: 212 NDFVSIKMDGRIESLNAAIAASIL 235 >gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K] Length = 230 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 10/157 (6%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V+IL Q N G + R+ F + + + R ++ A S+ + +++ Sbjct: 83 VLILDHIQDSFNFGSILRSANAFGWNYIIIPSKRSVEINDVALKVSSGGFYNVKIIKI-D 141 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L AI L + F + + + +G+I G E GL+ Sbjct: 142 SLIVAINFL---------KEHGFWIYGSMLDENSFEIKNAPINFPIGLIIGNEHSGLSKT 192 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 I + + ++ SLN + A +++ + + S Sbjct: 193 MINSLDVKVKIMMSGTVQSLNAAVATGILLHDLSKKS 229 >gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6] gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6] Length = 155 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + G E+AR D V D+ +V Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVASVF----YTGVRYERAR------DFVTDTKKVHH 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E ++ P +N++ V ++++ Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140 >gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium prausnitzii A2-165] Length = 267 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%) Query: 9 QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANAD 65 + + P ++L + N+G V R+ + + P+ G S SSA A Sbjct: 109 REKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAA 166 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 + RV +N+ E T R ++ V + L + +G + ++ Sbjct: 167 ERLPVARV-ANIGE----------TIRRLKDQGVFVYCADMDGVPLRKNNLTG-PIALVL 214 Query: 126 GRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVS 175 G E G++ L + ++ + S N+S A ++++E Sbjct: 215 GSEGSGVSQLVKKLCDGVVRLDMAAQGTGVDSFNVSVAAGIILYEIQSQRAAE 267 >gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio] gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio] gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio] Length = 435 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLM 164 + ++ ++ ++ G E GL+ E + L+ + P+ P SLN + A ++ Sbjct: 352 PQVYHECWAQRSAALVIGGETHGLSVEALRLAEETDGKRLFVPMAPGVESLNSAMAAGIL 411 Query: 165 VWECMENSIVSSEKNVKEQNT 185 ++E ++ S+K + T Sbjct: 412 LFEGRRQLLMLSDKLRRRART 432 >gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP] Length = 155 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 31/157 (19%) Query: 12 AKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A GP+ ++L +P+ N+G VAR L L+ P ++ + + Sbjct: 3 APGPLLHVVLFEPEKAGNVGNVARTCAVLGAA-LHLIRPYGFHLGDREFRRAV--MDYLQ 59 Query: 70 SVRVFSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 V + + + A+ ++A + A + + + ++ Sbjct: 60 GVELHQHDSWTAFQSALPQTARVWAFST--------------HAQQYHTQAGFQRGDYLL 105 Query: 125 FGRERWGLT---NEEIALSNAIISFPVNPLFPSLNIS 158 G E GL E + + P SLN+S Sbjct: 106 LGPESRGLPAWLREPLP----TLKLPQPGTGRSLNLS 138 >gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2] gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2] Length = 171 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 39/185 (21%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKAR 58 M P + L P + N G + R A F + L+ P S++A Sbjct: 1 MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRAL 57 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNE 113 + ++ A R+ ++L+ Sbjct: 58 KRA--GMDYLEQA--------------------ALTRHPDWHCFDAWRKNAGRRLVLLST 95 Query: 114 RIFS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +N ++FGRE G+ ++ + P+ SLN++ +V + Sbjct: 96 KAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTG 155 Query: 167 ECMEN 171 E + Sbjct: 156 EALRQ 160 >gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 391 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 12/138 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL------- 77 N+G + R+ + L ++ L + G + RSS+ + + V L Sbjct: 186 PANVGAIMRSAFFMGLRRIVLSSDSAGCTAAVCRSSAGFMEYMSVYRAVVPTLTFLENTV 245 Query: 78 --KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++A D H IYAT+ R + + +E V + + ++ G E GL Sbjct: 246 AQQKARDDGHLLEIYATSPMPRRGVTT-CSARELPSVSCGPVNKPRRRLLLLGNEGAGLP 304 Query: 134 NEEIALSNAIISFPVNPL 151 +E + L P+ P Sbjct: 305 SEVMGLCTHTAHIPLAPE 322 >gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A] gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A] Length = 268 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%) Query: 3 PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P ++ + V+I +VD NIG + R+ + + L + +A Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNCRAVRV 166 Query: 61 SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S + ++ + + + + F A T + + +L + Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 + I+ G E GL + IA ++ ++ P+ SLN++ A + W+ Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse] Length = 272 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 25/158 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNF--NLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSV 71 VI++ N+G + R+ F L+ P E +++ A +I+ + Sbjct: 125 VIVMDQITDPHNVGAIMRSAIAFKAG----ALITTCRHSPQESGVLAKAASGALEIINYI 180 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 V NL E + +LH + E +G+ + ++ G E G Sbjct: 181 TV-RNLAETLQELHKAGFIS----------FGLDSEGDHSLETALTGRKIALVLGAEGKG 229 Query: 132 L---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L T E + A+ + SLN+S A + ++ Sbjct: 230 LRKKTRETV--C-ALTRLDMPGNIKSLNVSNAATIALY 264 >gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] Length = 275 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 15/155 (9%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71 G V++L N+G + R+ F + +V P + ++ A ++ + Sbjct: 122 GIVLVLDQITDPHNVGAILRSAAAFAVQ--AIVTTARHSPEATGVLAKSASGALELVP-L 178 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 + NL A+ +L+ R L + + Q + ++ G E G Sbjct: 179 VLVQNLSRALTELN--------ERGFLTVGLDSE--GEDDLAAVALRQPLALVLGAEGKG 228 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L + + SLN+S A L ++ Sbjct: 229 LRQLTRQTCTTVARLDMPGEIKSLNVSNAAALALY 263 >gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734] Length = 306 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 26 ENIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83 ENIG + R L L P ++ S + R D Sbjct: 164 ENIGSIFRNAA--GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRD 221 Query: 84 LHFIYATTARNRNNFKSVLAP--KEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140 L + + R L P E G+ V ++ G E GLT + + Sbjct: 222 LELL-----QRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAA 276 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 + S P+ SLN++ A + +E + Sbjct: 277 DVRASIPMARGTDSLNVATAAAIAFYEAVR 306 >gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 15/156 (9%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70 +G V++L N+G + R+ F++ +V P + ++ A ++ Sbjct: 131 EGIVLVLDQITDPHNVGAIMRSAAAFSVK--AIVTTARHSPEATGVLAKSASGALEIVP- 187 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + NL A+A L+ +R L A + + + ++ G E Sbjct: 188 LVLVQNLARALAGLN--------DRGFMTVGLD--SAGSENLAAVPLREPLALVLGAEGK 237 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL +A+ + SLN+S A +L ++ Sbjct: 238 GLRQLTRDTCSAVARLDMPGHIKSLNVSNAAVLALY 273 >gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 250 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 29/160 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L L + + + K +S + + V Sbjct: 96 EGLILALDNIQDPGNLGTLIRLCDWFGIETL-LCSEQTVDCYNPKVVQASMGS---LSRV 151 Query: 72 RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGR 127 V + L + P A + E +++ ++ I+ G Sbjct: 152 EVHYLPLAGFLVTCDL-----------------PVYVATLAGEDLYTTTFPEDCVIVLGN 194 Query: 128 ERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 E G++ E AL+N I+ P SLN++ A ++ Sbjct: 195 EANGVSPEVAALANGAITIPRFGKRQQAESLNVAMAGAII 234 >gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855] Length = 251 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78 Q N+G + R F + + + K ++ A + V+V L Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSAGTVDVYNPKTVQATMGA---LARVKVHYCSLPQLI 167 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 E++AD+ +Y T + ++ S + I+ G E G++ E Sbjct: 168 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 211 Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173 L N + P +P SLN++ A ++ E + Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250 >gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 360 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 16/175 (9%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76 +L Q N+G + R+ + ++ + +SA A V+D VFS Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMD---VFSTD 212 Query: 77 -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L+ + + T + E I + ++ G E G Sbjct: 213 DLAGFLQAKAREGWLVAGTVG---CPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSG 269 Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182 L+ A +++ P P SLN+S A +++ + +E Sbjct: 270 LSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEGKRE 324 >gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 259 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + S K S + + +LK+ Sbjct: 119 QNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 176 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D+ +Y T ++ P+ ++ G E G++ E + Sbjct: 177 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 223 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + A + P+ SLN++ + ++++E + Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 256 >gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola 5H-3-7-4] Length = 244 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 21/152 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + +SA A + +V ++K+A+ Sbjct: 109 NFGAIIRTAECTGVHGIVIQKKGGAPVNGDTIKTSAGAVFKVPICKV-DHIKDAMFHLQA 167 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + I AT N F + Q I+ G E G+ + L++ Sbjct: 168 SGVKVIAATEKTNDTVF---------------DVSFKQPCAIVMGSEGRGINPSVLKLAD 212 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 A P+ SLN+S A ++E + + Sbjct: 213 ARAKLPLLGDIESLNVSVACGAFLYEAIRQRL 244 >gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis M163/99/10] gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] Length = 265 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 29/168 (17%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + ++ G E GL + + P++ F SLN++ A Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATA 264 >gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] Length = 314 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + + + ++ G E GL+ +AI+S P+ SLN S A +++ E Sbjct: 253 DELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVAAGVVLAEIARQR 312 >gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium 2_1_46FAA] Length = 257 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 11/155 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + Q N+G + R ++ + L + K S+ + + + +L Sbjct: 113 ILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFL-YVEDL 171 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + I ++ + V A + + G E GL +E Sbjct: 172 ENTIEEV----------KKQDIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIA 221 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + ++ SLN + A ++++E Sbjct: 222 EKADIWVKIKMHGEVESLNAAIASSILMFEVCRQR 256 >gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3] Length = 262 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 12/165 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + P ++L D Q N+G + R + Q+ S K ++ A Sbjct: 107 EAPQALLQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGA-- 164 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + V+V+ T + + + + R+ S Q ++ G Sbjct: 165 -LARVQVYRYTD-------RTALLTMLKKTEIPVIGTFIDGVPLRTLRLASEQPYILVLG 216 Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169 E G++ E AL + I+ PV+ SLN++ A +++ M Sbjct: 217 NEGNGISPELSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261 >gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium HTCC2083] gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 18/156 (11%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74 ++L N+G + R+ F + + R P A + +++ A +R+ Sbjct: 112 AVLLDRVTDPHNVGAILRSAEVFGASA-VIGTHRGSAPETGALAKTASGALERQPYLRI- 169 Query: 75 SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 NL E+I L + + L + + ++ G E Sbjct: 170 RNLAESIESLQKMGYLVIGLDGEAEQTIDAYL-----------EGKRDRPIALVMGAEGP 218 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL + +A++ F SLN+S A + ++ Sbjct: 219 GLREKTKDTVDALVKVEFAGAFGSLNVSNAAAVALY 254 >gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100] Length = 316 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + G ++ L + N+G V R++ F + + R + A +SA + Sbjct: 163 ATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPV 222 Query: 71 VR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + LK+ + + + V I+ G Sbjct: 223 AKATNMVRTLKQFQQAGYQVVGL--------------DAGGDHTLDTYDGTTPVVIVVGS 268 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ + I+S P+ SLN S A +++ E Sbjct: 269 EGKGLSRLVSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQR 313 >gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440] Length = 299 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 6/173 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 ++ +SA V+ P NIG + R+ F + + K+ ++ Sbjct: 108 DRLQRIPHSANMLVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATT 167 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + + VRV S A+ D +A + R ++ E V Sbjct: 168 GSLFTVPVVRVPS--HRAVLD----WADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTI 221 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 I+ G E GL+ + + P+ SLN + A ++++E S Sbjct: 222 IVVGNETRGLSTAWRQSCDRTVRIPITGAASSLNAAAAATVVLYEAARQRTAS 274 >gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 57-2] Length = 345 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLSAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862] Length = 298 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 18/158 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 +L + N+G + R + + + R + +S A + RV Sbjct: 153 VLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLV 212 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 +++ +++ T ++ + + +I G E G++ Sbjct: 213 QTVEQLKERGLWVFGTDMDGKDYRRW---------------DAAGPTALIIGNEGKGISP 257 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++ P+ SLN S A L++++ + Sbjct: 258 LLKKTVDETLTIPMVGHVQSLNASVAASLLIYQAFSSR 295 >gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora] Length = 268 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 21/178 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P + N ++L Q N+G + R + + L+ D W K +SA Sbjct: 103 PLGPIIPNFL----LVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPW-QPKVLRASA 157 Query: 63 NA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A ++ + NL + + + + AT K + P ++ Sbjct: 158 GATLALPLKRFLEKKLLLQNL-QILKGMQRV-AT-----RVNKHEVTPFIQPYW---QLN 207 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + + G E GL A+ ++ P L SLN+ A ++ E + + Sbjct: 208 WCKPTILFLGNEGSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQKLT 265 >gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum Ice1] Length = 256 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%) Query: 11 SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + P +L+ + NIG + R + + R G + +SA A + Sbjct: 96 AKGEPPFVLLLDGLEDPHNIGALLRTAEGAGAHGVIIPKRRGGAITSTVAKASAGAVEYV 155 Query: 69 DSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 RV + + +I + + AP+ VG+I Sbjct: 156 PIARVTNLVQTVGQLKKAGLWIIGSA---------MDAPRPYFRQDFR-----GPVGLIV 201 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G E G++ + ++S P+ SLN S A L+++E + Sbjct: 202 GSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVRQ 247 >gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera micronuciformis F0359] Length = 247 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 15/147 (10%) Query: 26 ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R + LV R P +E +SA A + VR+ + Sbjct: 108 HNLGAIIRTAECAGVHA-ILVPQRHSAPINETVAKTSAGAVEYMPVVRIGN--------- 157 Query: 85 HFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 TT + + VL + + + ++ G E G++ + + Sbjct: 158 ---VTTTLKQLKKQGFWVLGADMVGEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVL 214 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170 + P+ SLN S A L+++E Sbjct: 215 VRIPMFGRINSLNASVAAALLMYEVAR 241 >gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] Length = 242 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 81 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 139 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 140 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 184 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 185 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 235 >gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5] gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5] Length = 155 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G V RA + + + + K + D V D+ +V Sbjct: 8 CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFVTDTKKVHQ 57 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ I DL I + E A L E + + IFG E L Sbjct: 58 DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E ++ P +N++ V ++++ Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140 >gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245] Length = 263 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P+ P+ + ++ L D Q N G + R F + + KA SSA Sbjct: 105 PFEPE-RTDGSSLIVALDDVQDPGNAGTILRTAAWFGADAMICSAGTADRYNAKAVRSSA 163 Query: 63 NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + V +L+ E + R +V+A A E + Sbjct: 164 GSIYALPHYGV-DSLETELL-----------RLAGRGYAVIASSLAGQDFREFTSWPEKQ 211 Query: 122 GIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 ++ G E G++ AL+ ++ P P SLN S + ++ Sbjct: 212 VLVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLNASVSAAIL 257 >gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299] gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299] Length = 411 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 29/161 (18%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + + I+FG E G T E + ++A + P+ SLN+S A L + ++ Sbjct: 182 EKLAIVFGTESVGCTREALESADARVYLPLRGFADSLNLSVAAALCI-----QTLFHLCP 236 Query: 179 NVKEQNTPATKGEL-LSFLDYLEI-SLEERGYFRPVEKKKKMLDDLYSIFIRPE------ 230 + A + EL + L + RG R + + L + +R E Sbjct: 237 EAVGAMSDAERAELREKWFTQLAANRVTTRGQDRDLRDARTKLTRVRKKLLRAETATASG 296 Query: 231 ---------------LMREEVFLLRGIVSTLDKFSRQSSRR 256 L REE L I +++ R +++R Sbjct: 297 GGDPNPNGVGGRVADLEREETQLCDAI-RAMEETRRSAAKR 336 >gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1] gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335] gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 2503V10-D] Length = 255 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + N+G + R + + L N + K + S + + ++ Sbjct: 114 VILDNLTDPGNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 170 Query: 77 -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +++ + D N + + + + +G+I G E G++ + Sbjct: 171 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I P+ SLN + A +M++ Sbjct: 222 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 252 >gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium HTCC2148] Length = 261 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y +L A V+ L +N+GM+ R+ L + + ++ Sbjct: 102 YVEELPGLAPQRVLALDGITNPQNLGMILRSAAA-GHIDAVLWSSKGNAALGPLVIKASA 160 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + + + A+ R + + + A ++V Sbjct: 161 GTLYRAPLVMCDSQVNALR----------RLAQQEVEICSLEANASQTLFEFTPKKHVAY 210 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E G++ + + L++ +S P+N SLN++ L+ + Sbjct: 211 VLGNETEGVSKDVVQLADKSLSIPMNNGVESLNVAVTASLIAF 253 >gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf. prausnitzii KLE1255] Length = 310 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 20/177 (11%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSAN 63 ++ + P ++L + N+G V R+ + + P+ G S SSA Sbjct: 148 AAKDKGEAPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAG 205 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 A + RV +N+ E T R + V + L +G + + Sbjct: 206 AAERLPVARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRRNNLTG-PIAL 253 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSSE 177 + G E G++ L + ++ + S N+S A ++++E Sbjct: 254 VLGSEGSGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAAQQA 310 >gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum DSM 43827] Length = 321 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 22/174 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 ++ ++ L N+G V R+ F + L R + A +SA Sbjct: 163 ESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGTA--- 219 Query: 69 DSVRVFSNLKEAIADLHFIYAT--TARNRNNFKSVLAP----KEAAIVLNERIFSGQNVG 122 A L AT T + R ++ L + + ++ + + Sbjct: 220 -------------ARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGPLV 266 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++ G E GL+ + +S P+ SLN S A +++ E + + Sbjct: 267 VVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRRRLDA 320 >gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] Length = 228 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 4 YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57 P L++ K V++L +N+G + R F L++ KA Sbjct: 67 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125 Query: 58 RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 S A + ++ A+ A + + T + R+ + Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + ++ G E GL + + P++ F SLN++ A + + Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 221 >gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N] gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N] Length = 257 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 15/168 (8%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++L Q N+G + R + Q L S K S A Sbjct: 104 SLPERVGTNCVLLDRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHF 163 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +D DLH A +AR + + + A L + ++ +FG Sbjct: 164 AMDIHEHV--------DLH---ALSARL--DVPLAVTTLDDATSLYDTALP-ASLAWVFG 209 Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173 E G+ A + + P + SLN+ A + ++E I Sbjct: 210 HEGQGVDPALQAQAALRLRIPHDMQAVESLNVGAAAAICLFEQRRQRI 257 >gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603] gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603] Length = 175 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 23/163 (14%) Query: 16 VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 VII L +P+ N+G V RA A N + R Sbjct: 7 VIIGLHNPKSPTNVGAVMRAA---GCY--------------SATQVRYNGSRYNRAARFQ 49 Query: 75 SNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 ++ + + + TA + + V + +FG E L Sbjct: 50 TDTQNIQERIDLVEMVDLTAGLDQDVEIVCVELVVGATALPHFEHPEKAIYLFGPEDGSL 109 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 + + ++ ++ P + +N++ V +++++ M S+ + Sbjct: 110 PQDVVDKAHHVVYVPTHGC---MNLAATVNVVMYDRMAKSLGA 149 >gi|213029187|ref|ZP_03343634.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 105 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 P+ +PSLN+ QAV++ ++ + E Sbjct: 4 VPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 35 >gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252] Length = 200 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 12/187 (6%) Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P L+ + P V++L + + N+G + R + +L L + ++ Sbjct: 12 PDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQLHKTA 71 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 A+ + E + D + A + R + L + ++ + Sbjct: 72 LGAEETVPW--------EYVRDPVPLVA-SLRKAGYTIAALELTDTPTYTHQLPDDIFPL 122 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKN 179 +I G E +G+ I ++ + P SLN++ A + V++ + + + + Sbjct: 123 ALIVGHELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRRLQGDPRF 182 Query: 180 VKEQNTP 186 P Sbjct: 183 SPAPRQP 189 >gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 250 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ + T + A V + ++ G E G+ Sbjct: 169 LKKRGYWFFGT---------------DMAGVDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246 >gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 21/149 (14%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFS 75 L N+G + R+ F + L+ +EK +S + +++ + + Sbjct: 104 LDGTNDPGNLGTMIRSAEAFGFKDVILMPGTADVYNEKTLRASMGSIFRLNILN--KTYD 161 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 ++K+ + + +L+ + + + I G E GL+ E Sbjct: 162 DIKK-LKSCYR--------------ILSADMDGLDIR-NYKKDSKIIIAIGNEANGLSQE 205 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164 +++ I P+ SLN + A ++ Sbjct: 206 MREITDEFIKIPMEGEIESLNAAIAASII 234 >gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 325 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 18/165 (10%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 + L N+G V R++ F + + R + A +SA + Sbjct: 171 RPALTVALDGVTDPRNLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVA 230 Query: 72 R---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 R + L+E A A L + A + + L+E + + ++ G Sbjct: 231 RATNLTRTLREYASAGL-MVVGLAA-------------DGDVSLDEFDLATGPLALVTGS 276 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ + +S P+ SLN S A +++ E Sbjct: 277 EGKGLSRLVRETCDLTVSIPLAGRVESLNASVATGVVLAEVARRR 321 >gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 277 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 106 EAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 + AI LNE +I +GQ V +I G E G+T + + + + P++ SLN+ A + Sbjct: 209 DDAIPLNEVQITAGQKVAMILGNEGRGVTAQALEAVDQTVIIPMHREVDSLNVGAASAIA 268 Query: 165 VWEC 168 W Sbjct: 269 FWHL 272 >gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13] gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653] Length = 159 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 39/170 (22%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ Sbjct: 4 RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQA-- 56 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFS-------GQNV 121 A R+ ++L+ + +N Sbjct: 57 ------------------ALTRHPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQEND 98 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FGRE G++ ++ + P+ SLN++ +V + E + Sbjct: 99 ILLFGRESAGVSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148 >gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32] gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32] gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200] Length = 257 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 44 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 91 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ A + + A L + + +FG E + E Sbjct: 92 DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHPV-KAFYVFGPEDGTIGQE 150 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++A++ P +N++ +V ++++ Sbjct: 151 IIDKADAVVYVPT---VGCMNLAASVNVLLY 178 >gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149] Length = 124 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R S++ E I+ Q + G E GL++ + ++ P+ Sbjct: 40 RADGIGMSIMGTDERGILDAAEYDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSA 99 Query: 153 PSLNISQAVLLMVWE 167 SLN + A +M++E Sbjct: 100 SSLNAATAATVMLYE 114 >gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 300 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 23/158 (14%) Query: 25 GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLK 78 N G + R+ +F + L L G AR + A+ V D+ + + L+ Sbjct: 160 PHNFGAILRSSAHFGVAGLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLR 219 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A F A T + A L +R+ + G E G+ + + Sbjct: 220 QA----GFAVAATLVDGGQ-------DVFATALPQRL------VYVMGAESEGMDRQFAS 262 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + +S + L SLN++ A + ++ + Sbjct: 263 ACDLQLSIHGSGLVESLNVASATAVFQAAWRARALTGA 300 >gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33] Length = 171 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ + Sbjct: 16 RVALYQPDIPGNTGTILRMVACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + D A +N + ++ A + +N ++FGRE G+ Sbjct: 71 TRHPDWNCFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ +V + E + Sbjct: 123 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 160 >gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580] Length = 295 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 31/158 (19%) Query: 20 VDPQLGE------------NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 V P N+G + R F +L L +A+ S+ Sbjct: 145 VRPFYPGVYVYAEDIRAPFNLGSIFRTAEAFGAEKLLLSEGCVSPEQPRAQRSAMGCTRF 204 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + L A L V A + + F Q + ++ G Sbjct: 205 LPW-EYCP-LGSMPAGL---------------PVFALETGGTPITSFPFPKQGI-VLLGS 246 Query: 128 ERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLM 164 E GL+ E + ++A I+S P+ + SLN++ A ++ Sbjct: 247 EELGLSAEALKRASAGIVSIPMKGIKASLNVAVAFGIL 284 >gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST] gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST] Length = 1402 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 29/168 (17%) Query: 14 GPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-- 69 G +++ LV+ N+G +AR F + QL + N +++ ++ S A+ + Sbjct: 1246 GLIVVASLVN--RAPNLGGLARTGEIFAIKQLVI-NSLQDIGNKEFQALSMTAEKWLKIG 1302 Query: 70 ---SVRVFSNLKEAIA-DLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + RV L+E + A TT ++ + + Sbjct: 1303 ELKTHRVVEYLREMKEKGYSVVGAEQTTG----------------SKAIHQLQFPKKSVL 1346 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + G E+ GL E I + I P + SLN+ + +WE + Sbjct: 1347 VLGHEKNGLPAEIIRHLDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQ 1394 >gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus luteus SK58] Length = 298 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL + E+AL++ ++ P+ SLN+ A + ++ Sbjct: 239 AAPTAWLFGNEAQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|254472132|ref|ZP_05085532.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062] gi|211958415|gb|EEA93615.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062] Length = 186 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 I G ER L+ E + I+ P LN+ A L++++ +E++ Sbjct: 97 QAAYILGPERGSLSKEMQERCDYIVKIPTK---FCLNVGVAAALVLYDRYMAHGKYAERS 153 Query: 180 VKEQNT 185 + Sbjct: 154 ITAGAP 159 >gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32] Length = 144 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 92 ARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149 AR R V+ + E A+ L + + + G E+ G+ E + L ++++ P+ Sbjct: 62 ARERAAGTRVVGVELAEEAVRLADLPAARGRTIAVLGHEQTGIPPEVLDLLDSVVEIPMV 121 Query: 150 PLFPSLNISQAVLLMVWEC 168 SLN++ A L++++ Sbjct: 122 GTGASLNVAVAGSLVLYKL 140 >gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 259 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + S K S + + +LK+ Sbjct: 119 QDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 176 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D+ +Y T ++ P+ ++ G E G++ E + Sbjct: 177 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 223 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + A + P+ SLN++ + ++++E + Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 256 >gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis] gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis] Length = 412 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 36/179 (20%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 ++ + + N+G + R +Q+ + + KA + + Sbjct: 240 PITVVCDNIREPNNLGSIIRTCAAVPCSQVVVTHGCCDPWESKALRGGCGGQFRLP---I 296 Query: 74 FSNL----------KEAIADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFS 117 ++ E H A T R E + Sbjct: 297 HDDVTWEQLPLHIPAEVADTCHVFIAENNPSKTAKRAGRTVDY-----------AELDQT 345 Query: 118 GQNVGIIFGRERWGLTNEEIALS------NAIISFPVNPLFPSLNISQAVLLMVWECME 170 G + +I G E G++++ + + P+ SLN++ A+ L+++E + Sbjct: 346 GAHNVLIIGGESHGVSDDAYSFMKLVGDRGKCVYIPLAAGIDSLNVASALTLILFELRK 404 >gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium ammoniagenes DSM 20306] Length = 317 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 16/176 (9%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 A + G +IL + N+G V R++ F + + R + A +SA Sbjct: 154 AEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213 Query: 65 DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + R + ++E + + + A + L+ V Sbjct: 214 AARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHT-------------LDTYKGGKDPV 260 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 I+ G E G++ + I+S P+ SLN S A ++ E V++E Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQRRVANE 316 >gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155] gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155] Length = 254 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ + + + A L + + +FG E + E Sbjct: 97 DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 I ++A++ P +N++ +V ++++ + + S + + + EL+ Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207 >gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253] Length = 345 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 20/153 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 A-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 +A + T++ K + + + + ++ G+E GL + Sbjct: 265 FRLAGYT-VVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARD 309 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 310 PNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903] Length = 181 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 21/172 (12%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA 62 P L + +G + L D Q N+G + R + L D + + RS Sbjct: 25 EQPVLPDQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQG 84 Query: 63 NADCV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + +D + L+ A + ATT A + ++ Sbjct: 85 SHFHIPIWKLDREEL---LERATQSHLAVLATTLSE-------------ASIDYRQLPQT 128 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 ++ G E G++ E ++ ++ P+ SLN++ A ++++ + Sbjct: 129 DRFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180 >gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073] gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 45-1] gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 153-1] Length = 345 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM 17565] Length = 267 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 17/146 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 NIG + R+ + + L + +A S A I + +L + +++L F Sbjct: 134 NIGAIFRSAAALGMDAVLLRRNSCDPLNRRAVRVSMGAVFCIPWTWMDGSLSD-LSNLGF 192 Query: 87 ---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 A T + + +L + + I+ G E GL +E IA ++ + Sbjct: 193 RTAAMALTDNSVSIDDPILMAE-------------SKLAIVVGSEGDGLAHETIAEADYV 239 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169 + P++ SLN++ A + W+ Sbjct: 240 VRIPMSYGVDSLNVAAAAAVAFWQLR 265 >gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818] gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 230 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 28/172 (16%) Query: 1 MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKAR 58 + P A L+ + + +L + NIG + R + + + + P + E Sbjct: 69 IPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLPSLSQKAIEGIV 128 Query: 59 SSSANADCVIDS-----VRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLN 112 S+ A ++ +VF L E + + +F R Sbjct: 129 RLSSGA--FLNMPYGVFTQVFDVLNE-LKNANFTLVGADMRG-----------------Q 168 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 ERI + Q + G E GL+ + ++S + F SLN++ A ++ Sbjct: 169 ERIENPQKWALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGIL 220 >gi|145628737|ref|ZP_01784537.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] gi|144979207|gb|EDJ88893.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae 22.1-21] Length = 39 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 19/30 (63%) Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ R +L + E+ +L G++S ++K Sbjct: 1 MRKLKRLYYRAKLEKNELNILNGMLSAVEK 30 >gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral taxon 848 str. F0332] Length = 326 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 34/180 (18%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 + G V+ L N+G V R+ F DG + RS+ NA Sbjct: 169 RAGRPGLVVALDSVTDPHNLGAVMRSASAFG---------ADGVVVPERRSAGVNATVWK 219 Query: 69 DSV--------RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 S NL A+ L F R + + F Sbjct: 220 VSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDT-------------AIEDISF 266 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + + ++ G E GL +AI S P+ SLN++ A + +++ S Sbjct: 267 ADAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRARSQ 326 >gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus] gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName: Full=Mitochondrial large ribosomal RNA ribose methylase; Flags: Precursor gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus] gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus] gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus musculus] Length = 320 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 22/162 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N+G V R+ + + + + R+ P + +SA A V+D VF+ Sbjct: 147 VLEGLQDPRNLGAVMRSAHFLGVDR-VITSQRNSCPLTPVVSKASAGAMEVMD---VFAT 202 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L+ + T + + I + ++ G E Sbjct: 203 PDLPGFLQAKAQQGWLVVGTVG---CPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGS 259 Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVW 166 GL+ E A +++ P P SLN+S A +++ Sbjct: 260 GLSQEVFASCQLLLTILPRRHLP--PGLESLNVSVATGILLH 299 >gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54] Length = 262 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 15/179 (8%) Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 +TP L + ++ Q N+G + R + ++ L S K S Sbjct: 98 VTPPPLSLPAAVDENCVLFDRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRS 157 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 A + +A ++A Sbjct: 158 GQGAHFALAIHEHVD--------------LSALLPTLGVPLVATALEGAQDLYAGRLPAR 203 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEK 178 +FG E G+ E +A + + P + SLN+ A + ++E ++ + + Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKLRIPHDMAAVESLNVGAAAAICLFEQRRQALADAAR 262 >gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183] gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175] gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183] gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175] Length = 249 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ + + + A L + + +FG E + E Sbjct: 97 DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 I ++A++ P +N++ +V ++++ Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY 183 >gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665] gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665] Length = 298 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL + E+AL++ ++ P+ SLN+ A + ++ Sbjct: 239 AAPTAWLFGNEAQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287 >gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3] gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29] Length = 265 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 82 ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + +Y T N + V P + +I G E G+ E +A Sbjct: 183 KLKENSVPVYGTALENGAPYGEV-TP-------------AGSFALIVGNEGSGVRQEILA 228 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + P+ SLN++ A ++ + Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256 >gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 212 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 19/177 (10%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNF--NLTQL-RLV-NPRDGWPSEKARSS 60 P ++A ++L + +N+G + R+ F T++ LV PS ++ Sbjct: 40 HPDEDSAAPSMWLVLDEVVDPQNLGALLRS-AYFLGGSTKVGILVCAKNSAPPSPTVSAA 98 Query: 61 SANADCVID---SVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF 116 SA A ++D + + L A +D I +A R+ + L E Sbjct: 99 SAGALELVDLYSTSNLPRTLAAAESDGFRIVGASASVPRDLNVPLY-------ELQEISE 151 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECME 170 ++ G E GL + + P SLN+S +++W ++ Sbjct: 152 MSGPTILVLGSEGHGLRSLVAKSCTEFVKVPGAVDAGGVDSLNVSVTGGILLWHFLK 208 >gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217] gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217] Length = 200 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 45/174 (25%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65 N+ +I LV+P+ N+G + RA + V+ + + ++ + D Sbjct: 21 SNAVSSVIIGLVNPKTPVNVGGIMRAA---GCYR---VDSVC-YTGRRYELAAKSGDAQY 73 Query: 66 --CVIDSVRV-----FSNLKE------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112 D+ + +L + I + + T + P Sbjct: 74 DVDTKDAAKTIPLTGVESLLDQVPVGAKIICVDLVVGAT-----PLPHFVHP-------- 120 Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ IFG E + I ++ ++ P +N++ +V ++++ Sbjct: 121 ------EHAFYIFGPEDGTIPQVLIDAAHEVVYVPT---VGCMNLAASVNVLLY 165 >gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 265 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + L E + A T + + VL + + I+ G Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL++E IA ++ ++ P+ SLN++ A + W+ Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223] gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223] Length = 249 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ + + + A L + + +FG E + E Sbjct: 97 DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 I ++A++ P +N++ +V ++++ + + S + + + EL+ Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207 >gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1] Length = 271 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150 R+ + + P L + + + + + I+ G E GL + ++ + P+ Sbjct: 189 RDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMAR 248 Query: 151 LFPSLNISQAVLLMVWE 167 SLN++ A L +E Sbjct: 249 GTDSLNVATAAALAFYE 265 >gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT 5713] Length = 253 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 26/155 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K + + I + NL Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136 + R+ FK + P LNE GQ+ ++ G E G++ E Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEI 220 Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170 + +++ + P N SLN++ A ++++ + Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253 >gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella multipartita DSM 44233] Length = 326 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 16/158 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G + R+ F + + R + A +SA + R + LK+ Sbjct: 181 PRNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYA 240 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A I A + + + + ++ G E GL + + Sbjct: 241 AQGLMIAGLDA-------------DGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCD 287 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 +S P+ SLN S A +++ E + + Sbjct: 288 VTVSIPMARSVESLNASVAAGVVLAEVARRRRLETPTP 325 >gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271] Length = 265 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G++ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVSQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium MS024-2A] Length = 239 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 N+G + R + L+ L + + K +S + + +L + Sbjct: 102 SDPGNLGTLIRICDWYGLSDLICSSNTVDCYNSKVVQASMGSIVRV-QCHYVDDLHSTLI 160 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 +L+ K + L + F + +FG E GL+ + N Sbjct: 161 NLN-------------KPIYGADLNGQSLYKTDFE-EQASFVFGSESHGLSAAVSKIINH 206 Query: 143 IISFP---VNPLFPSLNISQAVLLMVWECMEN 171 I+ P SLN++ A + + E + Sbjct: 207 KITIPNFRSGRGAESLNVAVAGAIFLSEIFRS 238 >gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 289 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 23/173 (13%) Query: 6 PQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P L +G V++ +N+G + R F + L KA Sbjct: 125 PSLGGFLEGLPDQALVVVACGIANHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRV 184 Query: 61 SANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A + R + + + E ++ + + R R Sbjct: 185 SVGAALRVPFCRGGSILALVGELVSHGFEVVGLSPR--------------GAEELSRFQP 230 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 G+ ++ G E GL EE+ + A + P SLN++ + +W + Sbjct: 231 GRRQVLLLGTEGEGLP-EELLNALATLRIEQAPGLDSLNVATTSGIALWHIAK 282 >gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603] Length = 265 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79 Q N+G + R + + L + K S+ + + V+ NL+E Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + + +Y T E + E +G + +I G E G+ E +A Sbjct: 183 KLKESNVSVYGTA-------------LENGVPFGEVTPAG-SFALIVGNEGSGVRQEILA 228 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + P+ SLN++ A ++ + Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256 >gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4] Length = 268 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 26/173 (15%) Query: 5 APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64 AP L + +IL D Q N+G + R + + + S K + A Sbjct: 110 APSL-SMINEDCLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGA 168 Query: 65 DCVIDSVRVFS--NLKEAIADLHF-IYATTARNRN--NFKSVLAPKEAAIVLNERIFSGQ 119 ++ ++ +++E + + ++AT++ + +P Sbjct: 169 QFALN---IYEGLSVQEVLDHVETPLFATSSHTDTVIYQHDLKSP--------------- 210 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I G E G+ +E+ I+ P SLN++ A L ++E + Sbjct: 211 -IAWIMGHEGQGVC-DELMQCATPIALPQPNGQESLNVAIAGSLCLYETLRQR 261 >gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 268 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + S K S + + +LK+ Sbjct: 128 QDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 185 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 D+ +Y T ++ P+ ++ G E G++ E + Sbjct: 186 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 232 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + A + P+ SLN++ + ++++E + Sbjct: 233 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 265 >gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012] gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella boydii 5216-82] gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 155-74] Length = 345 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ + I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185] Length = 268 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 15/145 (10%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA--IADL 84 NIG + R+ + + L + + S A + + +L + + Sbjct: 133 NIGAIFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAWMNGSLSDLGKLGFR 192 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 A T ++ + P + + + I+ G E GL+++ I ++ ++ Sbjct: 193 TAAMALT----DDSIPIDNP---------ALVNESKLAIVMGNEGEGLSHDTITEADYVV 239 Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + W+ Sbjct: 240 RIPMVHGVDSLNVAAAAAVAFWQLR 264 >gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H591] Length = 349 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346 >gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227] Length = 370 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 289 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + + ++ G+E GL + Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARDP 335 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367 >gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli UMNK88] Length = 345 Score = 46.6 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M605] Length = 349 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346 >gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9] gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H736] gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9] Length = 349 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346 >gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 248 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 20/148 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83 N+G + R+ L L +++P + K SS ++ + ++ +E + D Sbjct: 119 PGNLGGIIRSADALGLDGL-IISPESCDLYNPKTVRSSMSSIFRLP---IYFMAREDLVD 174 Query: 84 LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L F I AT+ N + + ++ G E G+++ + + Sbjct: 175 LDFNILATSLENSTSTRDYDF--------------KDKDIVVIGNEAKGVSDFLMTHAKG 220 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170 ++ P++ SLN + A ++++E M+ Sbjct: 221 FLNIPISDKVDSLNANVAASIIIYEMMK 248 >gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A] gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989] gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A] gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A] gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989] gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 182-1] gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 119-7] gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 78-1] gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W] gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 145-7] gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W] gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11] gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167] gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA271] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492] Length = 265 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + L E + A T + + VL + + I+ G Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL++E IA ++ ++ P+ SLN++ A + W+ Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|145640332|ref|ZP_01795916.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae R3021] gi|145274918|gb|EDK14780.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae 22.4-21] Length = 39 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 19/30 (63%) Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248 + L ++ R +L + E+ +L G++S ++K Sbjct: 1 MRKLKRLYYRAKLEKNELNILNGMLSAVEK 30 >gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536] gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972] gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101] gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli 536] gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11] gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972] gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15] gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 185-1] gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 200-1] gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 21-1] gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101] gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU 83972] gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327] gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 60-1] gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli AA86] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046] gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197] gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739] gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5] gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94] gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11] gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1] gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952] gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606] gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9] gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B] gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354] gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088] gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50] gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736] gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739] gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5] gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94] gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4196] gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4113] gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638] gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4076] gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4401] gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4486] gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4501] gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC869] gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC508] gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22] gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019] gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171] gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1] gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4206] gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4045] gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4042] gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. EC4115] gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli] gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli] gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11] gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str. TW14588] gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1] gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952] gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1] gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615] gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088] gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354] gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 196-1] gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 175-1] gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 84-1] gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 115-1] gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 116-1] gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 187-1] gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 107-1] gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 124-1] gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 146-1] gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella dysenteriae 1617] gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407] gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1827-70] gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1] gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 85-1] gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 3431] gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B] gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli E128010] gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella sonnei 53G] gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli LT-68] gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1180] gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 1357] gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520] gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482] gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120] gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489] gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007] gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 117-3] gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36] Length = 265 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%) Query: 12 AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+ V+I +VD NIG + R+ + + L + +A S ++ Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175 Query: 70 SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + L E + A T + + VL + + I+ G Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 E GL++E IA ++ ++ P+ SLN++ A + W+ Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264 >gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030] Length = 273 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFP 147 R + L P A+ L E + + V ++ G E GLT + ++ P Sbjct: 188 REQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEHAMRATDVRARIP 247 Query: 148 VNPLFPSLNISQAVLLMVWECMEN 171 + SLN++ + + +E + Sbjct: 248 MAAGTDSLNVATSAAIAFYERQRS 271 >gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 26/162 (16%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID 69 AK V++L +N+G + R F L++ KA S A Sbjct: 130 PAKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKAIRVSVGATL--- 185 Query: 70 SVRVFS--NLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 V F N+ E A+ D +F + A + + + + Sbjct: 186 KVPYFHGGNIDEIIAALGDANFNLLALSPSS--------------TLSIYDAAKQDRHAL 231 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + G E GL + P++ F SLN++ A + + Sbjct: 232 LLGTEGEGLPPRLLGKLQTA-RIPMSTAFDSLNVATASGIAL 272 >gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436] Length = 210 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 25/150 (16%) Query: 27 NIGMVARAMWNFNLTQLRLV-----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 NIG + R + + +V N R +++ + D + + A+ Sbjct: 78 NIGSIVRTANAMGVRHVHIVGRRRWNRRGAMVTDRYMQVHHHPD--------VESFQAAM 129 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + E ++ L E + N ++ G E GL+ E A+S Sbjct: 130 QEA-----------GMRIVGVDNIERSVPLEETVLP-LNCVMVMGEESTGLSPEMAAISE 177 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 I+ S+N+ A + +W + Sbjct: 178 EIVHITQYGSTRSMNVGHAAAISMWAWVLQ 207 >gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli LF82] gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp. Group II '5-way CG'] Length = 192 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 28/163 (17%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 P++ + Q N+G + R + + L R S +S+ A I + Sbjct: 43 LPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLI 102 Query: 72 RVFSNLKEAI-----ADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 RV NL +++ + R+ F + L I Sbjct: 103 RV-GNLSQSLIYLRKQGYGVASLALGGSTAYRDPFPAPLV-------------------I 142 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E G++ + S+ +S P+ SLN+S A+ + ++ Sbjct: 143 VVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185 >gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 24/162 (14%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 Q ++IL N G + R + + + R + +S A + Sbjct: 96 QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155 Query: 69 DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 RV +NL +A+ L +++ T T + + + Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 +I G E G++ + +I+ P+ SLN S A ++ Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAIL 239 >gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 239 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +++ V+IL + + N G + R F + + ++ +S A Sbjct: 84 IKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINY 143 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + V +NL I +L ++YAT+ E++ Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATS--------------LLKSQSYEKVDYANKTVF 188 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I G E G++ + ++ I + SLN+ A +++ Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T] gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T] gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017] gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2a str. 2457T] gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 4343-70] gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2747-71] gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-671] gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri 2930-71] gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri VA-6] gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-218] gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-272] gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-227] gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Shigella flexneri K-304] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS] gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS] Length = 263 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%) Query: 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68 SA+ V+ L D Q N+G + R F + + P S+ Sbjct: 110 PASARSFVVALDDVQDPGNVGTIIRTAAWFG-AEAVICGRGTADPYNAKSVRSSAGSIFA 168 Query: 69 DSVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ +L + + L F A +A + +++ ++ Sbjct: 169 LAIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFF-------------AEWPARRVLVI 215 Query: 126 GRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 G E G++ E +AL++ + P P SLN S + ++ Sbjct: 216 GNEANGISAEILALADRRLLIPPAGARPAVESLNASVSAGIL 257 >gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 182 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 30/160 (18%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCVIDS 70 + I LV+P+ N+ + RA + + + + + + NAD Sbjct: 19 QKISIGLVNPKNPVNVASILRAAGCYGVA--------SVFYTGQRYRFAKDFNADTKAFH 70 Query: 71 VRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + NL++ I + A + E A L +N + G Sbjct: 71 KTIPTIGVDNLRDVIPQHASVVA------------VELVEGATPLP-SFEHPENAFYLLG 117 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E + + ++ + ++ P + +N++ ++++ Sbjct: 118 PEDGSIGEDILSWCDHVVYVPT---YSCMNLAATANVLLY 154 >gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] Length = 253 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 26/182 (14%) Query: 1 MTPYAPQLQNS---AKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS- 54 + P L + + P +L+ N+GM+ R L +V PR G + Sbjct: 87 LAPRMRALSAALADRRPPSRVLLLDGITTPANVGMILRTATAAGLDG-VIV-PRRGVAAL 144 Query: 55 EKARSSSANADCVIDSVRVFSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIV 110 + ++ V + +EA +A+ F +YA A R V P Sbjct: 145 DPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGFGLYALGASARTTVFDVDLP------ 198 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 Q + G E G+ E L +S P+ SLN+S A ++ +E + Sbjct: 199 --------QRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELVR 250 Query: 171 NS 172 + Sbjct: 251 RA 252 >gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length = 268 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150 R+ + + P L + + + + + I+ G E GL + ++ + P+ Sbjct: 186 RDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMAR 245 Query: 151 LFPSLNISQAVLLMVWE 167 SLN++ A L +E Sbjct: 246 GTDSLNVATAAALAFYE 262 >gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ + I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 251 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R + + + R + +S A + RV +NL Sbjct: 105 ILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARV-TNL 163 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +L +++ T G V ++ G E G++ Sbjct: 164 VQVAKELQKRGVWLFGT--------------DMQGTDCRRWDAKGA-VALVIGNEGKGIS 208 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 209 PLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQ 242 >gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506] Length = 282 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 12/152 (7%) Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 GPV+I + +NIG + R F + + L + KA S D R Sbjct: 131 GPVLIAIGIANHDNIGALFRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRS 190 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 N + IA A L PK + + + + ++ G E GL Sbjct: 191 -GNADDLIA--------AAEAAGYRPIALTPK--GEHSLDDLEPTERLALVVGAEGPGLP 239 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + + SLN++ +++ Sbjct: 240 ENILDRLHGL-RIAMESDVDSLNVATTAAIVL 270 >gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli TA280] Length = 349 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346 >gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 69-1] Length = 345 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404] Length = 434 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 24/162 (14%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL---KEAI 81 +N+G V R+ + F + + L + A +SA A +ID + S+L Sbjct: 270 PQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLIDLYQTESSLKFIDSVR 329 Query: 82 ADLHFIYATTARNRNNF------KSVLAPKEAAIVLNER-----IFSGQNVGIIFGRERW 130 + + +T+ + K + A + I V ++ G E Sbjct: 330 KNGWHVISTSGKPDEVSNDELADKHPKTISQLASKFIDLEDLQIILRKSPVMLVIGSEGE 389 Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMV 165 G+ S+ ++ P + SLN+ A +++ Sbjct: 390 GVRTNVKLRSDYLVGIP---KYRSDDVIVDSLNVGVATGVIL 428 >gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649] gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649] Length = 269 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 22/140 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS-----NLKEA 80 N+G V R+ + LV PR P +A S + R+ NL Sbjct: 133 NVGAVFRSAAALGM-DAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINL--- 188 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIAL 139 + D F A A + + A+ L+E + + ++ G E GL+ + Sbjct: 189 LRDSGFTVAALALSDD-----------AVGLDELAANPPERLALVLGTEGDGLSRRTVEG 237 Query: 140 SNAIISFPVNPLFPSLNISQ 159 ++ ++ P+ SLN++ Sbjct: 238 ADVVVKIPMAGGVDSLNVAA 257 >gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102] Length = 556 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 17/199 (8%) Query: 2 TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P+ NSA P+++L + N+G + R + + + + + S Sbjct: 348 NTFVPKANNSATKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKS 407 Query: 61 SANADCVIDSVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNER 114 +A A + V +F + E + YA A + + K + E+ Sbjct: 408 AAGAA---EEVTIFTVDSPVEFLKGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQ 464 Query: 115 IF--SGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169 ++ G E GL + ++ +S P SLN+S A L+ + Sbjct: 465 TSPLDQHPCVLVLGNEGHGLPRQVKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFV 524 Query: 170 ENSIVSSEK--NVKEQNTP 186 + S + + + E + P Sbjct: 525 KGSARNKNRVNQIPEADPP 543 >gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a] gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39] gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026] gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412] gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302] gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39] gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a] gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026] gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042] gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412] gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302] gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia coli MS 198-1] gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli 2362-75] gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli RN587/1] gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli H299] Length = 345 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20] gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20] Length = 253 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 18/153 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74 IL + N+G + R + + + R + S A + RV Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLV 167 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + E +++ T + + + ++ G E G++ Sbjct: 168 NVVGELKDRGVWVFGTDMSGDDYRRW---------------DAKGPTALVIGNEGKGISP 212 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 +++++ P+ SLN S A L++++ Sbjct: 213 LLKKKVDSMLTIPMVGHVQSLNASVAASLLIYQ 245 >gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 261 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT++ I P+ SLN + A L+V+E Sbjct: 204 KGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQR 257 >gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1] gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2] Length = 257 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + G E GLT++ I P+ SLN + A L+V+E Sbjct: 200 KGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQR 253 >gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 27/177 (15%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVI 68 + + V+ L Q N+G + R F + + +P S K ++ A + Sbjct: 98 DPSTSLVLALDGIQDPGNLGTIIRLADWFGIEHIV-CSPDTADVFSPKTVQATMGA---L 153 Query: 69 DSVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V+V L++ + A AR + + + S + I+ G Sbjct: 154 AHVKVHYTELEDYLK------AQAARQ----IPLFGTFLDGENMYTKELSANGI-IVMGN 202 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVSSE 177 E G+ + L N + P FP SLN++ A ++ E +++ Sbjct: 203 EGNGIRPQIEKLINQKLYIPS---FPPERETSESLNVAIATAVICAEFRRCQGNAAQ 256 >gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii CaD3] Length = 265 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 21/170 (12%) Query: 4 YAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58 P Q + P V+ L D Q N+G + R F + L + K Sbjct: 101 RQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVV 160 Query: 59 SSSANADCVIDSVRVFSNLKEAIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFS 117 S A + + R + + + + + V + E + F Sbjct: 161 RSCAGSLFALPHYR-----------CNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAF- 208 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 G I+ G E G++ A ++ ++ P P SLN S A ++ Sbjct: 209 GDKTVIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNASIAAAIL 258 >gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli M718] Length = 349 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346 >gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM 18603] Length = 224 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 22/161 (13%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L Q N+G + R F + + + A + +V Sbjct: 83 IVLDGIQDPGNLGTIIRTADWFGIQNII-----CSEDTVDAY-----------NAKVVQA 126 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133 ++A +H Y A+ N K P A++ E I+ G I+ G E G+ Sbjct: 127 TMGSLARIHVHYVNLAQLITNTK---LPVFGALLDGENIYQTNFGSQGLIVLGNEGNGIR 183 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 E AL ++ P+ SLN++ A + E V Sbjct: 184 PEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISRGKFV 224 >gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant [Strongylocentrotus purpuratus] Length = 449 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 119 QNVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 + ++ G E GL+ E L I P++ SLN + A ++++E + Sbjct: 385 GDYALVIGGETEGLSREAKELCTETGGRRIFIPMSMGIDSLNAAMATSVILFEAKRQLLT 444 Query: 175 SSEKN 179 +++ + Sbjct: 445 ANKSH 449 >gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P NIG + R+ L + K+ SS + + +VRV + E Sbjct: 133 RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRV-PSPGEV 191 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 ++ A R ++ E Q ++ G E GL+N L Sbjct: 192 ---XDWVEA--RRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246 Query: 141 NAIISFP 147 + +S P Sbjct: 247 DYTVSIP 253 >gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM 17374] Length = 265 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 +IL + NIG + R +F + ++ L+ +A+ ++ +D + Sbjct: 120 TVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARGCTETVDWSMMD- 178 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +E++ DL + K + E V ++ G E +G++ Sbjct: 179 --EESVIDLI----------HRRKVPVFALETGGVNIAGFPFPPEGIMVVGNEEFGVSPA 226 Query: 136 EIALSN---AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +S SLN+S A +++ Sbjct: 227 LLRACQESAGRLSLLQAGTKASLNVSVAFGIVMHAWFTA 265 >gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321] Length = 246 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 23/152 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID------SVRVFSN 76 Q N+G + R T + + + S K S + + + Sbjct: 111 QDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQALLKET 170 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + AI + ATT K + +E + +N ++ G E G++ Sbjct: 171 KEAAIP----VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNEGQGISPLM 213 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ ++ + SLN++ A ++++ Sbjct: 214 VESADQLVHISMKGQAESLNVAVAAGILIFHL 245 >gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040] gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040] Length = 262 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 25/164 (15%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P +IL+ N+G + R+ + ++ R + + + + A ++ Sbjct: 110 AEVPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 166 Query: 71 -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122 +R S+ A+ + ++ L A E +G + + Sbjct: 167 QPYLRMRNLSDTIVALQQMGYLV-------------LGLDGEAEETIEEAVAGRTKEPIA 213 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E GL + + ++ F SLN+S A L ++ Sbjct: 214 LVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257 >gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 286 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 22/142 (15%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83 N+G R+ + LV PR P ++ S + + + + E A Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRIERWPAMDELHAQ 204 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEEI 137 + A LA E ++ L+E S G V ++ G+E GL++ I Sbjct: 205 GFTVAA------------LALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTI 252 Query: 138 ALSNAIISFPVNPLFPSLNISQ 159 A ++ ++ P+ SLN++ Sbjct: 253 AEADEVVRIPMAGAVDSLNVAA 274 >gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii] Length = 169 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 15/147 (10%) Query: 27 NIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---FSNLKEAI 81 N+G + R L L+ PR P +A +S + R+ L + Sbjct: 29 NVGAIIRCAA--GLGWDGVLLAPRAADPLYRRAIKTSMGTVFALPWARLSDWCQGLGH-L 85 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + F A A + ++ ++ E A L R + V ++ G E GL++ + ++ Sbjct: 86 KEHGFTIAAMALSDDS----VSLDEFAAQLRSRP---RKVALLMGTEGAGLSSHWVNQAD 138 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ P++ SLN++ A + + Sbjct: 139 VVVRIPMHHGVDSLNVAAAAAVACYAL 165 >gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334] Length = 252 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 39/160 (24%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68 Q N+G + R T +V+ + S+ A ++ Sbjct: 117 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA--LL 173 Query: 69 DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 + + A + + ATT K + +E + +N ++ G E Sbjct: 174 EKAKK--------AGIS-VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNE 211 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 G+++ ++ ++ + SLN++ A ++++ Sbjct: 212 GQGISSLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251 >gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter oceani DSM 16646] Length = 265 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ L + NIG + R + + + K S+ + + Sbjct: 114 IVALDGIKDPGNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLP------ 167 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 I + ++ K V+ A V ++FG E G++ E Sbjct: 168 ----VIEGVDLPVVLHELSQKRAKIVVT-HLGAEKSYFDADLTGPVVLVFGSEAEGVSPE 222 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + +S ++ P+ SLN++ A ++++E + Sbjct: 223 ILKISTEVVKIPMPGKAESLNVAVAGGIVLFEAVRQR 259 >gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ] Length = 249 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 12/157 (7%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L G +IL N+ ++R NF + +L ++ + P + +S A Sbjct: 54 LDQRISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKG--PMKWTNRTSQGAHKW 111 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + + + D + ++R A + AI E F+ + ++ G Sbjct: 112 VTMQKWYET-----KDCLQYF----KDRGVQIVSTAFSDKAIPYTEVDFT-KPTALLMGN 161 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 E +G++ +S+ P SLN+S A ++ Sbjct: 162 ESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIV 198 >gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter racemifer DSM 44963] Length = 249 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 21/136 (15%) Query: 57 ARSSSANADCVID------SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110 A ++ + + + + V A + AR N +++ K+ I Sbjct: 118 AEAAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMI-----ARETNLTRTIDYLKQQNIW 172 Query: 111 LNERIFSG----------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 + G + ++ G E G+ + +I P++ SLN + A Sbjct: 173 IVGLAGEGDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVA 232 Query: 161 VLLMVWECMENSIVSS 176 + ++E + ++S Sbjct: 233 GSITLYEALRQRSLAS 248 >gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88] gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88] gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034] gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146] gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein [Escherichia coli MS 110-3] gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252] gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263] Length = 345 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79 N+G + R+ +F + +V S A ++ + + + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2] gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 254 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 19/154 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + + K ++ I V+V ++ Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T + + E+ S + I+ G E G+ E L N Sbjct: 167 DFIRSLGDT--------PIFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217 Query: 143 IISFPVNPLFP----SLNISQAVLLMVWECMENS 172 + P P SLN++ A ++ E + Sbjct: 218 KLYIPNYPEGQETSESLNVAIATAVICAEFRRQA 251 >gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 2045 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 13/178 (7%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 + L+ + +++ + NI + R F + L V + + +++ + Sbjct: 1877 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLV-VPEKKVFEHPHFVAAARS 1935 Query: 64 ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNV 121 A+ I V +L + L R R V+ ++ A + E+ + Sbjct: 1936 AELWIPWEEVVPKDLPGYLEGL--------RRRGYV--VVGIEQTAASVPLEQFSFPERC 1985 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E G+ I L + + P L SLN+ A + ++E +++ Sbjct: 1986 AVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2043 >gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3] Length = 251 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 12/147 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K ++ + + V +L + I Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR + V V + + I+ G E G+ + + L+ Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTTE 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 + P+ SLN++ A ++++ Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM 44928] Length = 174 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 14/148 (9%) Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 P N+G + R L PR W E A + + + Sbjct: 36 PMHEANLGTLLRTCDAVGA---CLAVPRLPWVPEAL----ARGNTLRHPACIHWT----- 83 Query: 82 ADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 + T R + V + A+ L + + ++ G ER G+ + +AL Sbjct: 84 -GDQLSWLTHQHTRTDTTIVGAELADEALRLADLPPARNRTVLVLGHERDGIPPDAVALL 142 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168 + + P+ SLN++ A L+++ Sbjct: 143 DLAVEIPMVGTGASLNVAVAGSLVLYRL 170 >gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium smegmatis str. MC2 155] gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium smegmatis str. MC2 155] Length = 154 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 19/148 (12%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 ++ P++ N G R + +L LV+P SE + + SV V Sbjct: 3 RVMFFSPRIAPNTGNAIRMVAATGC-ELHLVHPLGFDLSEPKLRRAGLDYHDLASVTVHD 61 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L A + AR P + + +V ++FG E GL + Sbjct: 62 DLPSA-----WQALMPARVYVFTAHASTP------FTDIAYRPGDV-LMFGPEPTGL--D 107 Query: 136 EIALSNAIIS----FPVNPLFPSLNISQ 159 E L++ I+ P+ SLN+S Sbjct: 108 EQTLADPHITEQIRIPMLAGRRSLNLSN 135 >gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia dioxanivorans CB1190] Length = 329 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 16/151 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81 N+G V R++ F + + R + A +SA + R + L+E Sbjct: 189 PRNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQE-Y 247 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 A+ + A A + + +++ + + ++ G E GL+ + Sbjct: 248 ANTGLMVAGLAADGDVS------------IDDFDLATDPLVLVIGSEGKGLSRLVRETCD 295 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +S P+ SLN S A +++ E Sbjct: 296 VTVSIPLAREVESLNASVAAGVVLAEVARRR 326 >gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2] Length = 201 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 25/159 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLR-----LVNPRDGWPSEKARSSSANADCVIDS 70 V+ L + Q N+G + R +F++ L + +P+ ++ A + + Sbjct: 61 VVFLDNLQDPGNVGTIIRLSKSFDIDTLIVKNFDIYSPKCLRSTQGAIFN--------QN 112 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + + +N + + +L + F+ V + + +IFG E Sbjct: 113 IILVNN-NDLLKELQH---------SGFEIVTTVLNQESIELNNFNFNKKTVVIFGNEGS 162 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 G+ E I SN I P++ F SLN++ +++ + Sbjct: 163 GIEKEIINNSNKKIYIPIS--FESLNVATCAAIVLNKWR 199 >gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f. nagariensis] Length = 162 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+ +AR +L L + S S A+ + V +A L Sbjct: 13 NLAGLARTCEVMGAGRLVLAD-LAATRDPVFTSVSVTAEQWLPMEEVKP--AALLAWLER 69 Query: 87 IYA---TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 A T +SV P V ++ GRE+ G+ E ++L +A Sbjct: 70 RAAEGYTLVGLEQTAQSVRLPDY---------RWPAKVVLVLGREKEGIPPEVLSLLDAT 120 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + P + SLN+ + + ++E + + Sbjct: 121 LEIPQRGIIRSLNVHVSGAIALYEYVRQMQFPQQ 154 >gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195] gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195] gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678] Length = 254 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + + + + + +A + V + + K Sbjct: 49 LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96 Query: 79 EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A + T+ + + + A L + + +FG E + E Sbjct: 97 DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 I ++A++ P +N++ +V ++++ + + S + + + EL+ Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207 >gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii L2-6] Length = 268 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 20/170 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69 + P ++L + N+G V R+ + + P+ G S SSA A + Sbjct: 113 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 170 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV +N+ E T R + V + L + +G + ++ G E Sbjct: 171 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 218 Query: 130 WGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVSS 176 G++ L + ++S + S N+S A ++++E S Sbjct: 219 SGVSQLVKKLCDGVVSLDMTAQGTGVDSFNVSVAAGIILYEIQSQRAAQS 268 >gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM] Length = 250 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 18/153 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79 + N+G + R + + + + +S A + RV KE Sbjct: 109 EDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 ++ + T + A V + +I G E G+ Sbjct: 169 LKKRGYWFFGT---------------DMAGVDYREWNAKGKTVLIIGNEGKGIAPLLKKQ 213 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + I+ P+ SLN S A +++++ + Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246 >gi|332671651|ref|YP_004454659.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332340689|gb|AEE47272.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 173 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 36/76 (47%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R+R + + E ++ L + + + ++ G E+ G+ E + L + + P+ Sbjct: 94 RDRGSTVVGVELAEESVRLGDLPAARRRTVVVLGHEQTGIPPEALDLLDVTVEIPMVGTG 153 Query: 153 PSLNISQAVLLMVWEC 168 SLN++ A L+++ Sbjct: 154 ASLNVAVAGSLVLYRL 169 >gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836] gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836] Length = 175 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E A+ L + + + G ER G+ E + + ++ P+ SLN++ A L++ Sbjct: 109 EEAVRLADLPPARHRTVAVLGHERTGIPPEALDELDLVVEIPMIGTGASLNVAVAGSLVL 168 Query: 166 WEC 168 + Sbjct: 169 YRL 171 >gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 238 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 V ++ G E G+ L + + P F SLN+ A+ + ++E S Sbjct: 178 GKVALVVGSEDKGIRTTVRTLCDHFGNIPT--DFESLNVHVALSIALYEAKRQREFKSGS 235 Query: 179 NVK 181 ++ Sbjct: 236 SMD 238 >gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23] Length = 548 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%) Query: 2 TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 + P+ NSA P+++L + N+G + R + + + + + S Sbjct: 340 NTFVPKANNSAMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKS 399 Query: 61 SANADCVIDSVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNER 114 +A A + V +F + E + YA A + + K + E+ Sbjct: 400 AAGAA---EEVTIFTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQ 456 Query: 115 IF--SGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169 ++ G E GL + ++ +S P SLN+S A L+ + Sbjct: 457 TSPLDQHPCVLVLGNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFV 516 Query: 170 ENSIVSSEKNVKEQNTPATK 189 + S + + + ++K Sbjct: 517 KGSARNKNRVNQTPEADSSK 536 >gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 290 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 102 LAPKEAAIVLNERI--FSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 L P A+ L + + +GQ V ++ G E GLT + ++ P+ P SLN Sbjct: 214 LTPHPEAVHLADALVDATGQPYDKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLN 273 Query: 157 ISQAVLLMVWE 167 ++ + + +E Sbjct: 274 LATSAAIAFYE 284 >gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712] Length = 272 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R+ + Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPRGLE--- 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144 R L P E A+ ++E + V ++ G E GLT + + ++ + Sbjct: 187 -----AVREAGFKLLALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN+ Sbjct: 242 RIPMAHGVDSLNVGA 256 >gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170 str. F0386] Length = 304 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 13/157 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N G + RA + LV + K S+A + + + + L Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVA-L 216 Query: 78 KEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +A+A LH T A R +F + + G E GL +E Sbjct: 217 DDAVAALHEAGLTVLAADGRGDF----------DLFEAESLLEAPSAWLLGNEAHGLPSE 266 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ ++A++S P+ SLN++ A + ++ Sbjct: 267 ALSRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303 >gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus obscurus DSM 43160] Length = 319 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 9 QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 ++S + P+++ + N+G V R+ F+ + + R + A +SA A Sbjct: 164 RDSGRPPLVVAMDGVTDPRNLGAVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAAR 223 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 + R NL A+A T + L + + ++ G Sbjct: 224 LPVARAV-NLARALASYQDAGLMTVGLAGDGDVDLHDFDGFPD---------PLALVVGA 273 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 E GL+ + ++ P+ SLN+S Sbjct: 274 EGAGLSRLVRERCDVVVRIPIARDTESLNVSV 305 >gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis EAS054] Length = 197 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 31 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 90 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 91 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 136 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E GL+ + ++S P+ SLN S A +++ E E + QN Sbjct: 137 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 194 >gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22] gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23] Length = 254 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + + K ++ I V+V ++ Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T V + E+ S + I+ G E G+ E L N Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217 Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251 >gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium DG1235] Length = 154 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 27/164 (16%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P++ +N G + R ++L L++P +K S S+ V + Sbjct: 4 VVLFQPEIPQNTGNIGRTCAITE-SRLHLIHPLGFVIKDKHLKRS--GMDYWKSLDVHHH 60 Query: 77 LK-EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 EA ++ T ++ + V + G++FG E G Sbjct: 61 ESWEAFKASDVGPKRLFLFTTKSSQPYWDVQY--------------EEGDGLLFGNEGHG 106 Query: 132 LTN---EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171 + +E+ + ++ P N SLN++ A + +E M Sbjct: 107 APDWLHDEVGE-DRRLNIPQYNSSLRSLNLATAAGVATFEVMRQ 149 >gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 27/177 (15%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVI 68 + + V+ L Q N+G + R F + + +P S K ++ A + Sbjct: 98 DPSSSLVLALDGIQDPGNLGTIIRLADWFGIEHIV-CSPDTADVFSPKTVQATMGA---L 153 Query: 69 DSVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 V+V L++ + A AR + + + S + I+ G Sbjct: 154 AHVKVHYTELEDYLK------AQVARQ----IPLFGTFLDGENMYTKELSANGI-IVMGN 202 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVSSE 177 E G+ + L + + P FP SLN++ A ++ E +++ Sbjct: 203 EGNGIRPQIEELIDQKLYIPS---FPPERETSESLNVAIATAVICAEFRRRQGNAAQ 256 >gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J] Length = 233 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L ++IL Q N+G + R F + + L R +E S+ Sbjct: 73 TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKRRAAKLNETTMKVSSGGFV 132 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + + + +++ AI L +F + + I II G Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 E G+ + S+ P+ SLN++ A ++++ +N Sbjct: 183 NEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227 >gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli CFT073] Length = 370 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 289 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 335 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367 >gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 +A+G +++L N+G + R+ F++ + E + +A ++ Sbjct: 125 AAEGMILVLDQITDPHNVGAILRSAAAFDVKAIV---TTARHSPEATGVLAKSASGALEL 181 Query: 71 VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 V + NL A+ L R L A + + + ++ G E Sbjct: 182 VPIITVQNLARALTRLD--------ERGFQTVGLD--SAGPTDIAAVALREPLALVLGAE 231 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + + SLN+S A +L ++ Sbjct: 232 GKGLRQLTRETCSVVARLDMPGAIKSLNVSNAAVLALY 269 >gi|332637245|ref|ZP_08416108.1| tRNA/rRNA methyltransferase (SpoU) [Weissella cibaria KACC 11862] Length = 204 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + +FG E+ GL +E I ++A+I P SLN+S A ++ ++ +++ Sbjct: 143 EKSVFLFGEEQIGLADELIQAADAMIYIPQTGSVRSLNVSVAHGIIA------ALYTAQH 196 Query: 179 NVKEQNT 185 V E Sbjct: 197 PVPEAPA 203 >gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A] Length = 254 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + + K ++ I V+V ++ Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T V + E+ S + I+ G E G+ E L N Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217 Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251 >gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483] gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f] Length = 254 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + + K ++ I V+V ++ Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T V + E+ S + I+ G E G+ E L N Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217 Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251 >gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 317 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 24/167 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN---- 76 Q N+G + R+ + + R+V + + +S+ A V D V+S Sbjct: 163 QDPMNLGALLRSAYFLGVD--RVVTSQRNSCPLTPTVSKASSGAMEVFD---VYSTDDLR 217 Query: 77 --LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 LK A+ + T +++ + ++ + + ++ G E GL+ Sbjct: 218 SFLKAKAAEGWEVVGTVSQSE-------TVENVPVISCLEFRWNKPIILVIGSEGDGLSL 270 Query: 135 EEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSE 177 E L + ++ P +P SLN+S A +++ + +S+ Sbjct: 271 ETQLLCHQMLVIPSGRALHPGIESLNVSVATGILLHSICSQKLRNSD 317 >gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan troglodytes] Length = 353 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 27/199 (13%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N G V R+ + + + + R+ P + SSA A V+D VFS Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204 Query: 77 ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L+ + T E I+ + ++ G E Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ---SSEIPIMSCLEFLWERPTLLVLGNEGS 261 Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSEKN 179 GL+ E A +++ P P SLN+S A +++ + Sbjct: 262 GLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTEGERRQL 319 Query: 180 VKEQNTPATKGELLSFLDY 198 +++ + + E LS + Sbjct: 320 LQDPQELSARSEGLSMAQH 338 >gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 242 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 20/151 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE-AIAD 83 N+G + R F + QL + K ++ + ++ +F++L+ ++ Sbjct: 108 PGNLGTIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLTRVN--VIFTDLESYLLST 165 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 +F Y + E +N I+ G E G+++E + +A Sbjct: 166 SNFKYG--------------AFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAK 211 Query: 144 ISFPVNP---LFPSLNISQAVLLMVWECMEN 171 IS P + SLN++ A +M+ E Sbjct: 212 ISIPRHGVIKSAESLNVAMAGAIMLSEFKRR 242 >gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3] Length = 160 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 24/154 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRV- 73 I LV+P+ EN+G V RA + + R AR + ++ + Sbjct: 15 CIGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDH----ARKFHTDTKEKHLELPLIG 70 Query: 74 FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 LK+ I + + E A L + IFG E L Sbjct: 71 VEELKDIIPVGCVPVA-------------VDLIEGAKPLPDYKHP-PRAFYIFGPEDGTL 116 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E I P N +N++ +V ++++ Sbjct: 117 KKEITDFCRDTIYVPTNGC---MNLAASVNVVLY 147 >gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT] gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT] Length = 262 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + V I G E G+++E L + + P+ SLN+ A +M++E + Sbjct: 205 KKVIICVGNEGNGVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQ 257 >gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB 400] gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB 400] Length = 180 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 47/176 (26%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-- 65 + + + I LV+P+ N+G + RA V+ + K +A + Sbjct: 2 VNSPFQQVTIGLVNPKTPVNVGGIMRAA---GCYN---VDNVCY--TGKRYELAAKSGDA 53 Query: 66 ----CVIDSVRV-----FSNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIV 110 D+ + +L +++ D + + T + P Sbjct: 54 QYDVDTKDAAKRIPLVGVESLLDSVPDGATIICVDLVVGAT-----PLPLFIHPD----- 103 Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 N IFG E + + I ++ ++ P +N++ +V ++++ Sbjct: 104 ---------NAFYIFGPEDGTIPQQLIDAADDVVYVPT---VGCMNLAASVNVLLY 147 >gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii SL3/3] Length = 297 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69 + P ++L + N+G V R+ + + P+ G S SSA A + Sbjct: 142 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 199 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV +N+ E T R + V + L + +G + ++ G E Sbjct: 200 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 247 Query: 130 WGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176 G++ L + ++ + S N+S A ++++E V Sbjct: 248 SGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAVEE 297 >gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3] Length = 257 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 213 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255 >gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length = 269 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R + L P A L +G V + G E GLT+E + ++ + P+ Sbjct: 190 REAGFTVAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGV 249 Query: 153 PSLNISQ 159 SLN++ Sbjct: 250 DSLNVAT 256 >gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1] gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1] Length = 189 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 39/170 (22%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ Sbjct: 34 RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQA-- 86 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFS-------GQNV 121 A R+ ++L+ + +N Sbjct: 87 ------------------ALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQEND 128 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++FGRE G+ ++ + P+ SLN++ +V + E + Sbjct: 129 ILLFGRESAGVPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 178 >gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 274 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 17/171 (9%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 L + + +++ D + N G V R + + K+ ++ + Sbjct: 116 ALLDRSPTFLVVCADIRDPGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLF 175 Query: 67 VIDSV--RVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + V R A+ A L + A A + + F L Sbjct: 176 HLPLVIDRDVEGTLAALQSAGLQVLAADGAGDVDLFDPSLD-------------LAAPTA 222 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 + G E WGL ++ +++ P+ SLN++ A + ++ + + Sbjct: 223 WLMGNEAWGLPEATRGRADHVVAVPIFGRAESLNLATAAAVCLYTTARSRL 273 >gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri CARI] Length = 260 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 14/158 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R + + L N + + SS +F+N Sbjct: 114 ILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLG--------TIFTN- 164 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNE 135 K IA+ I + N+N K + ++I +++ II G E GL++ Sbjct: 165 KIVIANYKIII--SWLNKNKIKIISTSVNKIYNNFFMKKIKK-KSLAIIIGSESKGLSDI 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +I+ P+ SLN+S + ++++E + + Sbjct: 222 WFKNKKNMINIPIKGKIDSLNVSTSTAIILYEILRQKL 259 >gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 171 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 26/152 (17%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L++P+ N+G V RA G + + N +++ + ++ K Sbjct: 10 LINPKSPTNVGGVLRA---------------AGCYDAQQVFFTGN--RYLNAQKFHTDTK 52 Query: 79 EAIADLHFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 + + AT +++ + V+ E A L E +N +FG E + Sbjct: 53 NVVQRIPLT-ATDNLASSKPQGAKVVVIELIEGATPLPEFTHP-ENAFYVFGPEDGSVPK 110 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + ++ P +N++ ++++ Sbjct: 111 DVLKWCDEVVYIPT---IGCMNLAATCNVVLY 139 >gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271] Length = 255 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 10/164 (6%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P +P + +IL Q N+G + R + L ++K +S Sbjct: 98 PSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRASQ 157 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + ++ V L+EA A ++ + + + Q + Sbjct: 158 GSLWHLE-VVSLDLLQEARP---------AFEAAGIPWLVTALHQEAKAYQEVPANQKLA 207 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ G E G++ I +++ I P+ SLN++ A ++++ Sbjct: 208 LVLGNEGQGVSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMF 251 >gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 228 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 22/153 (14%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L NIG + R + + + + + E +S+ A + V++ Sbjct: 85 VLVLCGISDVGNIGALFRTAFVLGVDGIVICG-LKDFKQEGVLRASSGAMLDMPFCLVYN 143 Query: 76 NLKEA----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 L A A Y + + + + + G E G Sbjct: 144 ALDVANELKFAGFRL-YGASLKG----------------VESNGVTQGKKALFLGAEGNG 186 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 L+ + + + ++ F SLN+S A ++ Sbjct: 187 LSAKILKKMDINLTIAQKREFDSLNVSTAGAIL 219 >gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 253 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 26/179 (14%) Query: 7 QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSS 61 + N + P ++L+ + N G + R+ +T+ R N P+ + +S Sbjct: 86 EAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAHGIITEAR--NSCPITPTVE--KAS 141 Query: 62 ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A A I RV + + ++YA A Sbjct: 142 AGAIEHIKVARVVNLRRTIDSLKEKGVWVYA--------------ADNNAEKFVYDCDFK 187 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 + II G E G++ ++ ++ P S N S A ++ +E ++ + E Sbjct: 188 IPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQRMQEGE 246 >gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279] Length = 303 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + S + + + G E GL + IA + I P+ SLN++ A + W+ Sbjct: 233 ALQSIERLAVFMGTEGAGLQPKTIAGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287 >gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1] Length = 253 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 12/154 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L + Q N+G + R + + L + K S+ + + + NL Sbjct: 112 LDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGSHFHLP--IIKGNLS 169 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 I R R V + S + +I G E G++ + Sbjct: 170 SWID----------RLRTEEIPVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILD 219 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLN++ A ++++ + Sbjct: 220 STDQNLYVPIYGKSESLNVAIAAGILMYHLKKAQ 253 >gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395] gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385] gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757] gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80] gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52] gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457] gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33] gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2] gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395] gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10] gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385] gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757] Length = 257 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 213 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255 >gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC 39073] Length = 246 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E GL+ + + + P+ SLN++ A ++++E + + Sbjct: 192 LVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQRGQARP 246 >gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87] Length = 244 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 21/152 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81 N G + R + + + + +SA A I +V +++K+A+ Sbjct: 109 NFGAIIRTAECCGVDAIIIPEKGAAPINADTVKTSAGAVFNIPICKV-NHIKDAVFYLQS 167 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + + AT E L I + II G E G++ + + Sbjct: 168 SGIQTVAAT---------------EKTDNLIYNIDFKKPTAIIMGNEAKGISPSILKTID 212 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 P++ SLN+S A ++E + I Sbjct: 213 HKAKLPMHGEIASLNVSVACGAFLYEVVRQRI 244 >gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510] Length = 194 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 21/166 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 N+G + R F + ++P K +S + + + + Sbjct: 13 SKPGNVGNLMRTAHAFGASFFFAIDPEPDLRETKLVDTSGATLHLPLY--IHDRVADFTL 70 Query: 82 -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 D + + + A+ L + G ER L+ + Sbjct: 71 PKDCALVG-------------VELTDDAVELP-SFRHPSRAAYVLGPERDSLSPALLERC 116 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186 + ++ P++ +N+ A L++++ M + +E+ V+ Sbjct: 117 DHVVKIPMS---FCINVGVAGALVMYDRMISLGRFAERPVRPGGPL 159 >gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547] gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547] Length = 269 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R++ LV PR P ++ S + R+ +A+L Sbjct: 133 NVGAIFRSVAALG-ADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI-DPWPAGMAELQ 190 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 T A LA ++ A+ + + + + ++ G E GL + + ++ + Sbjct: 191 GAGFTVA--------ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAV 242 Query: 145 SFPVNPLFPSLNI 157 P++ SLN+ Sbjct: 243 RIPMSGGVDSLNV 255 >gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum DSM 5159] Length = 271 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 19/184 (10%) Query: 3 PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60 P P +A+ +I+ Q N+G + R+ + L+ P P + K + Sbjct: 104 PSIPFRLPTAEPLFALIVDRLQDPGNLGTLLRSALGAGVHA-VLLTPGTVDPFNPKVVRA 162 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQ 119 +A A + L A R ++ + A+ + + Sbjct: 163 AAGAHFHLPIA----TLDPV-----------AIQREFPGLEIVVARPQALRAYDERDWTR 207 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E G++ E L+ + P+ SLN A ++++E + K Sbjct: 208 ASAVVIGSEAHGISAELARLAADEVRIPLRGGVESLNAGVAGSIILFEAARQRRHAERKA 267 Query: 180 VKEQ 183 + Sbjct: 268 TTGE 271 >gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33] Length = 159 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ + Sbjct: 4 RVALYQPDIPGNTGTILRMVACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + D A +N + ++ A + +N ++FGRE G+ Sbjct: 59 TRHPDWNCFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ +V + E + Sbjct: 111 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148 >gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4] gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17] Length = 257 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79 Q N+G + R + + L + K S+ + + V+ NL+E Sbjct: 117 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 174 Query: 80 AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + + + +Y T+ N + V P + +I G E G+ E + Sbjct: 175 KLKEKNVPVYGTSLENGIPYGEV-TP-------------TGSFALIVGNEGNGVRLEILT 220 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 N + P+ SLN++ A ++ + Sbjct: 221 KCNQNLYIPIYGGAESLNVAVAAGILTY 248 >gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii M21/2] Length = 297 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69 + P ++L + N+G V R+ + + P+ G S SSA A + Sbjct: 142 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 199 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 RV +N+ E T R + V + L + +G + ++ G E Sbjct: 200 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 247 Query: 130 WGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176 G++ L + ++ + S N+S A ++++E V Sbjct: 248 SGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAVEE 297 >gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5] gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5] Length = 158 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L P + +N G + R + + ++ P S++ + +D V + Sbjct: 2 RIALYQPDIPQNTGTILRLCACLEV-EAHIIEPAGFPVSDRHFRRA--GMDYLDRVSIS- 57 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + R + + VL +AA + ++ ++FGRE G+ +E Sbjct: 58 ------RHVSWNAFRVWREADGGRLVLFTTKAATSYLAHRYEDTDI-LLFGRESAGVPDE 110 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ + P+ SLNI+ + + + E + + Sbjct: 111 VAESADQRLLIPIAEGMRSLNIAVSAAMALGEALRQT 147 >gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis VL426] Length = 244 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium johnsoniae UW101] Length = 244 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 21/171 (12%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + +K +IL N G + R + + + + +SA A Sbjct: 89 TIASGSKPLFLILDQISDARNFGAIIRTAECTGVNGIIVQKAGSAPVNGDTVKTSAGAVF 148 Query: 67 VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + +V ++K+AI + + + AT ++N + + + + Sbjct: 149 NVPICKV-EHIKDAIFYLQGSGIKTVAATEKTDQNIY---------------DLSLNEPL 192 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 II G E G+ + + + P+ SLN+S A ++E + Sbjct: 193 AIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQR 243 >gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus metalliredigens QYMF] Length = 272 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 31/171 (18%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSAN 63 L+ +++L + Q N+G + R + L + K+ ++ Sbjct: 114 DLEKKENPFIVVLDEIQDPGNLGTIIRTAEGAKT---DAIILTKGCVDPYNSKSIRATMG 170 Query: 64 ADCVI------DSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116 A + ++ LK A+ + +T ++N+F ++ Sbjct: 171 AIFHLPIIQSNNNEEWIYYLKANAVK---LVASTLETDKNHF---------------QLD 212 Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +I G E G+ + +A + + P+ SLN S A +++++ Sbjct: 213 YNNPIAMIIGNEARGIHPDILAQVDERVKIPILGKIESLNASVAAGILIYQ 263 >gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 28/163 (17%) Query: 13 KGPVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCV 67 + P+++LV N G + R +++ R R S A +SA A Sbjct: 90 EPPLLVLVDGVTDPRNFGAILRTAEALGAHGVVSEER----RSAPLSPVAVKASAGAAHR 145 Query: 68 IDSVRVFSNLK---EAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I VRV NL E + L ++Y T A + + + + Sbjct: 146 IPVVRV-KNLPRYIEWLKGLGVWVYGTAG--------------QAEKTLAELDYARPLAL 190 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G E G+ + ++ + SLN++ A+ + + Sbjct: 191 VVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALH 233 >gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15] gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15] Length = 254 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +++ N II G E G++ ++L++ + P+ SLN+ A ++++ Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250 >gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 268 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 16/173 (9%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62 L + ++L Q N+G + R+ + +P S K + Sbjct: 111 RPRPLPERVEATCVVLDGVQDAGNVGSILRSAAAAGIGD-VFCSPGTAHAWSPKVLRAGM 169 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A ++ RV ++ A + R + A L + SG + Sbjct: 170 GAQFLL---RVHEQVEAA----DLLA------RLAVPVFVTDSHDAQALYDVDLSG-PLA 215 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 +FG E G++ E A + ++ P SLN++ A + +E V+ Sbjct: 216 WVFGNEGAGVSAEWRAAVSRRVTIPQPGGMESLNVAAAAAVCFFEQCRQRRVA 268 >gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134] Length = 261 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +LQ +++ P+ NIG + R + + + NP+ + SS Sbjct: 108 ELQLPVNPLILVTEAPEKPGNIGALLRTADAAAVDAVIIANPKTDLYNPNIIRSSVGCVF 167 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +E I+ L + A + A+ + ++G + I+ G Sbjct: 168 TTQIAT--GSTEEVISFLQ---------EKDVAIYSAILQKAVDYATQAYTGGS-AIVVG 215 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 E GL+ E I P+ S+N+S A ++++E Sbjct: 216 TEATGLSP-EWRTVGTNIKIPMRGKIDSMNVSVAAGILIFEARRQR 260 >gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM 12042] Length = 239 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 24/176 (13%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62 + ++ + + +L + N+G R ++ T L+ RD SSA Sbjct: 80 SVQECLDAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTG-VLMGSRDWQTAQPTIVKSSA 138 Query: 63 NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 A + + +L A+ A A R++ Sbjct: 139 GASEQLAWC-LCEDLGAAVRQCRQAGCVLYCA----QRSDAIDYFDADFN---------- 183 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172 Q + + G E GL+ + + S+ I P P+ +LN + AV + +E + Sbjct: 184 -QPIVLAIGGELRGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAAISFEVVRQR 238 >gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia] Length = 1396 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 35/170 (20%) Query: 17 IILVDP---QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 II+V ++ N G + R F +L L N + E+ ++ S +A+ + + + Sbjct: 1247 IIVVATLLEKIP-NFGHLTRTCEIFGCRELVLPN-KKILQDEQYQAVSVSAEQHLPILEI 1304 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----------NVG 122 + + + + L + Q Sbjct: 1305 KED-------------------HLMNYLQLKRLQGYQLVALEQTSQSKSIVNFKFDKKTV 1345 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++ GRE+ GL E I L + + P + SLN+ + ++ VW+ ++ Sbjct: 1346 LVLGREKTGLPIEYIELMDNCVEIPQYGVIRSLNVHISAVICVWQYVQQW 1395 >gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 276 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 24/163 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F +T + + A + + +IA Sbjct: 129 QDPGNLGTIIRIADWFGITDIV-----CSEDTADAY-----------NPKTVQATMGSIA 172 Query: 83 DLHFIYA-TTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 +Y +A + V + E+ + V II G E G++ E Sbjct: 173 RTKIVYTDLSAYLESLPNETPVYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRH 231 Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSEK 178 N + P P SLN++ A + E S++ + Sbjct: 232 INHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTR 274 >gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 14/140 (10%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R+ F + L +EK+ +S + + V++ + E + Sbjct: 110 PGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVKLSN--DEIVN-- 165 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++R F LA + + S +N+ + G E GL++ +L+++ + Sbjct: 166 -------LKSRYKF---LASHMEGCDVRKYDASLENIILAIGNEANGLSDFLRSLTDSFV 215 Query: 145 SFPVNPLFPSLNISQAVLLM 164 + SLN + A +M Sbjct: 216 KIAMQGKIESLNAAIAASIM 235 >gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 244 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R FN+ L + K ++ + ++ ++++L + + L Sbjct: 107 PGNLGTIIRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVE--VIYTDLHKHLNTL 164 Query: 85 HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 I+ T + + L ++ I+ G E G+T E L N Sbjct: 165 DLPIFGTFMNGESVYSKPLP---------------EDFVIVMGNEANGVTKEIEELCNHR 209 Query: 144 ISFP---VNPLFPSLNISQAVLLMVWECMENSIV 174 I+ P SLN++ A + + E I Sbjct: 210 IAIPQFGSGAPTESLNVATATAITLSEFSRRLIE 243 >gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)] gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24] gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24] gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)] gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24] Length = 272 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R+ +A Sbjct: 132 NIGAIFRSAAALGM-DAILLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPAGLA--- 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 L P E A L+ V ++ G E GLT +A S+ + Sbjct: 187 -----AVGEAGFTLLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P++ SLN+ Sbjct: 242 RIPMSHGVDSLNVGA 256 >gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170] Length = 240 Score = 45.8 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 20/149 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+G + R F + L + K +S + ++ V+++L + Sbjct: 108 PGNLGTIIRLCDWFGIKNLLCSENTVDCFNPKVLQASMGSITRVN--VVYTDLVTFLEQT 165 Query: 85 HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 +Y T A + + + + ++ G E G++++ L N+ Sbjct: 166 KLPVYGT--------------FMNAASVYNKALPKKGI-LVMGNEGNGISSDIENLVNSK 210 Query: 144 ISFP--VNPLFPSLNISQAVLLMVWECME 170 IS P + SLN++ A + + E Sbjct: 211 ISIPQFGDKATESLNVASATSIFLSEIRR 239 >gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus] Length = 363 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 69/185 (37%), Gaps = 23/185 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS----SSAN 63 L + ++ +P N+ R + +F + +V+ + S++AR ++ Sbjct: 147 LDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTY-SKQARLKTMCTAMG 205 Query: 64 ADCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119 + + ++ ++A+A D + + A+ L+P I I Sbjct: 206 SQKWL-TLHGHDRPEDAVAKLKTDGYQVVAS----------DLSPSAVPI---SEIDWSV 251 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 ++ G E G+++ +++A P+ S N+S A +++ + Sbjct: 252 PTAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDL 311 Query: 180 VKEQN 184 +++ Sbjct: 312 PEDER 316 >gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89] gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli UTI89] gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 370 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79 N+G + R+ +F + +V S A ++ + + + + L + Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDD 289 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 335 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367 >gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length = 266 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +FG E GL ++ + P+ SLN++ A + ++ Sbjct: 208 ARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256 >gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 269 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 7/144 (4%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G + R L+ PR P +A +S + + R+ + ++ +A L Sbjct: 131 NVGAIIRCAAGLGWDG-VLLAPRAADPLYRRAIKTSMGSVFSMPWARM-DDWRDGLATLQ 188 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145 T + E A + R + I+ G E GL+ I+ ++A + Sbjct: 189 RA-GFTVAALALRDDAVGLDEFAARMRARP---GKLAILMGTEGAGLSGHWISQADAAVR 244 Query: 146 FPVNPLFPSLNISQAVLLMVWECM 169 P+ SLN++ A + + Sbjct: 245 IPMAHGIDSLNVAAAAAVACYALR 268 >gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707] Length = 266 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +FG E GL ++ + P+ SLN++ A + ++ Sbjct: 208 ARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256 >gi|320170244|gb|EFW47143.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 220 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +N ++ G E+ GLT + + L++ I+ P+ + S N+S A + ++E + Sbjct: 163 DRNTVLVIGNEKSGLTQDILNLADDILEIPIYGMPYSHNVSAATAIAIYEYCKQ 216 >gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis RM3268] Length = 233 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL NIG + R+ + + +V + +S+ A ++ V+ L Sbjct: 87 ILYGLTDVGNIGAIMRSAYALGADSVIVVA--NNLNMAGVVRASSGAAYELNVVKAADGL 144 Query: 78 KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +L IYA +A + + G ++ G E G+ Sbjct: 145 -SVLNELKQSGFEIYAASA---------------GGTSFKELELGAKNALVMGNEEEGIP 188 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + +S + + SLN+S A ++ Sbjct: 189 ARALKKCDCAVSIKMREGWDSLNVSAAFAILC 220 >gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80] gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9] gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33] gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286] gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236] gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101] gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1] Length = 244 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein [Escherichia coli EPECa14] Length = 247 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 108 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 166 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 167 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 212 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 213 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 244 >gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989] Length = 266 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 13/151 (8%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75 I L +N+GM+ R++ + L L P G + + A+A + + + Sbjct: 123 IALDRITNPQNLGMIIRSVCAGKIDGLLL--PSKGCATIDSLVVKASAGTLFKAPLLHCE 180 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 +L A+ + AT V A + Q V + G E G++ E Sbjct: 181 SLTGALHESKKQGAT----------VYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQE 230 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 L + IS P+N SLN++ L+ + Sbjct: 231 ISTLCDKRISIPMNNGVESLNVAITASLLAF 261 >gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 270 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 17/147 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R L L ++ P + ++ + V +L + Sbjct: 138 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPYQDKVMRASQGS-IFHIPVVTEDLATYMN 195 Query: 83 DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + +Y T E A+ E I + ++ G E G+ E + + Sbjct: 196 NFDGPVYGTA-------------LENAVSFKE-IEAQSTFALLLGNEGEGVNQELLQQTT 241 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 + P+ SLN++ A +++++ Sbjct: 242 KNLIIPIYGKAESLNVAIAGSILLYQL 268 >gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21] Length = 244 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39] Length = 249 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 18/155 (11%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L D Q N+G + R F Q + +P + K ++ + + +++ Sbjct: 109 VLDDVQDPGNLGTIIRTAEWFGFRQ-IICSPHTVEVYNPKTVQATMGSLSRLK--VYYTD 165 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 L ++ N V + E G +I G E G++ E Sbjct: 166 LAPLLS-------------NTPVPVFGAVLDGKSIYE-GGWGTEGLVILGNEGQGISPEI 211 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + L ++ P SLN++ ++ + N Sbjct: 212 MKLITHPVTIPRVGAAESLNVAICAAILCADISRN 246 >gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus Zinderia insecticola CARI] Length = 239 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +I G E+ G++ + + IIS P+ +LN+S A + ++E ++N Sbjct: 188 IVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSVATGIFLYEIIKN 238 >gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28] Length = 265 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 82 ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 + +Y T N + V P + +I G E G+ E +A Sbjct: 183 KLKENSVPVYGTALENGVPYGEV-TP-------------AGSFALIVGNEGSGVRQEILA 228 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + P+ SLN++ A ++ + Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256 >gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 253 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 17/160 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--- 66 + G +IL + Q N+G + R + + L S K S ++ Sbjct: 104 QTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLP 163 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +++ + LK+ + IY T K + E Q I G Sbjct: 164 ILEGA-IPPFLKQLRSAGVTIYGT-----ELNKEAVPYTELPKE--------QTAAFILG 209 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E G+ E +AL++ + P+ SLN++ A ++++ Sbjct: 210 NEGQGVHPELLALTDKNVYIPIYGQAESLNVAIAAGILMY 249 >gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 242 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 E ++FG E GL+ E +A + +++ S+N+ A +++W Sbjct: 176 ALEETILPAKACLVFGSEALGLSEEMLAACDVVVAVTQRGSTRSMNVGHAAAIVMW 231 >gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C] gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C] Length = 271 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 18/138 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82 NIG + R+ + L++P P ++ S A + R+ + +L Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKSLD---- 186 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R L P E A + + V ++ G E GL+ + + ++ Sbjct: 187 --------TVREAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAAD 238 Query: 142 AIISFPVNPLFPSLNISQ 159 + P+ SLN+ Sbjct: 239 EWVRIPMAHGVDSLNVGA 256 >gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933] gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 345 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFR 266 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + + T++ K + + + ++ G+E GL + ++ Sbjct: 267 QAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDPND 312 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + LNIS A +++ E Sbjct: 313 LRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon 107 str. F0167] Length = 261 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL Q N+G + RA +T + + + K S+ + + + +L Sbjct: 116 ILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFI-YVKDL 174 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 K+ I +L+ AR + + S L E A + + G ++ I G E G++ + + Sbjct: 175 KDIIEELY------ARKIDIYASSL---EGATEYDAPDYRG-SIAFIIGNEAAGISKDVL 224 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + P+ SLN + A ++++E Sbjct: 225 DAVKNKVKIPMLGEVESLNAAVAGSILMYEAARQR 259 >gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 22/171 (12%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P L N G ++L D Q N+G + R L + + + ++K S Sbjct: 92 PILP-LANLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSMQ 150 Query: 63 NADCVIDSVRVFSN-LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117 + + V+ + EA L I ATT + + + Sbjct: 151 GSHFHLP---VWRTNVYEACETLQNLGVPIIATTLSKDSVD-------------YKTVKH 194 Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 N ++ G E G++N+ ++ + + SLN++ A ++++ Sbjct: 195 DGNFALVMGNEGNGISNKMTNQADVLAHIIMPGQAESLNVAVATGIVLFSL 245 >gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 391 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL------- 77 N+G + R+ + L ++ L + G + RSS+ + + V L Sbjct: 186 PANVGAIMRSAFFMGLRRIVLSSDSAGCTAAVCRSSAGFMEYMSVYRAVVPTLTFLENTV 245 Query: 78 --KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 ++A H IYAT+ R + + +E V + + ++ G E GL Sbjct: 246 AQQKARDGGHLLEIYATSPMPRRGVTT-CSARELPSVSCGPVNKPRRRLLLLGNEGAGLP 304 Query: 134 NEEIALSNAIISFPVNPL 151 +E + L P+ P Sbjct: 305 SEVMGLCTHTAHIPLAPE 322 >gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484] gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484] Length = 280 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G R+ + LV PR P ++ S + R+ + I +L Sbjct: 145 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI-DPWPDGIEEL- 201 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 R+ + LA + A+ L+E + + + ++ G E GL +A S+ ++ Sbjct: 202 -------RSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVV 254 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN++ Sbjct: 255 RIPMAGGVDSLNVAA 269 >gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12] gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 253 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 27/171 (15%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDS 70 + L D Q N+G + R F + +P + KA ++ I Sbjct: 102 RNSLCLALDDIQDPGNLGTIIRLADWFGIEH-IFCSPNTVDVFNPKAIQATMGG---IAR 157 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+V A+ +L + V + E+ S + I+ G E Sbjct: 158 VKVHYI---ALPELIHVLG--------NVPVYGTFLDGKNMYEQPLSKNGI-IVMGNEGN 205 Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174 G+ E L N + P +P SLN++ A ++ E + + Sbjct: 206 GIGAEVEKLVNRKLYIP---NYPQERETSESLNVAIATAIVCAEFRRQAAL 253 >gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11] Length = 294 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 13/158 (8%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 A+ P ++L+ N+G + R+ + ++ R + + + + A ++ Sbjct: 142 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALER 198 Query: 71 VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128 NL + I +L R + E I G V ++ G E Sbjct: 199 QPYLRMRNLADTIVELQ-------RMGFLVLGLDGEAEQTIETVLEGRKGDPVALVLGAE 251 Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 GL + + ++ F SLN+S A + ++ Sbjct: 252 GPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAAIALY 289 >gi|327405077|ref|YP_004345915.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823] gi|327320585|gb|AEA45077.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823] Length = 158 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 17/101 (16%) Query: 70 SVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 R+ + L++ ++ + TA L E + + Sbjct: 56 WARIPYFHYDTLEDLCNNIPYDCCLTAIELTEGAEFLHDFEHP----------KRAIYLL 105 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + + +I P N SLN++ +++ Sbjct: 106 GSEDQGLPDSVLEKCRKVIKLPGN---SSLNVAVTGSIVLH 143 >gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex] Length = 476 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECME 170 + S ++ ++ G E GL++ L++ + P+ SLN AV ++ +E Sbjct: 404 LNSVTSLTLVIGGETHGLSSAAHKLAHEYGGLKVFIPLENKVDSLNAGVAVGILAYEFRR 463 Query: 171 NSIVSSEKNVK 181 + + + Sbjct: 464 LFLQKKVSDTQ 474 >gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA methyltransferase in Bacillus halodurans [Schistosoma japonicum] Length = 179 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 25/154 (16%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85 N G + R+ F ++ + L PS S A ++S+R + L + + D+ Sbjct: 30 NFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGA---MESIRFYR-LTDTVMDMKS 85 Query: 86 ------FIYATTARNRNNFKSVLAP-------KEAAIVLNERIFSGQNVGIIFGRERWGL 132 I T N+ V P + A N S + + + G E GL Sbjct: 86 LSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLALGSESRGL 145 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + + + ++ P + LN+ ++V+ Sbjct: 146 SENILNSCDLLLRIPGLAIQ--LNL-----IIVY 172 >gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD 1] Length = 136 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 27/145 (18%) Query: 35 MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADLHFI----Y 88 N + L ++ P EKA + D + V+ +++E + Sbjct: 2 CVNAGAS-LHIIKPIAFDIDEKAVRRA--GLDYWDKLDLHVWESIEEFFEKNTITDNAHF 58 Query: 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISF 146 ATT ++ G I FG E G+ E I ++ I+ Sbjct: 59 ATTKTDK-------------PYFEAEFKEGD--FIFFGSETAGIP-ENILNAHKEQNITI 102 Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171 P+ SLN++ + +++++ + Sbjct: 103 PMTKEGRSLNLAISTGIVLYDAIRQ 127 >gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 ++ G E G+ + +I P+ + SLN+S A + ++E + + Sbjct: 191 GATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEINRQRVTA 247 >gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 242 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 23/157 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71 +G ++ L + Q N+G + R F + L L + + + K +S + + V Sbjct: 96 EGLILALDNVQDPGNLGTLIRLCDWFGIETL-LCSEQTVDCYNPKVVQASMGS---LSRV 151 Query: 72 RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V + L+ +A V L F ++ I+ G E Sbjct: 152 EVHYLPLEGFLATCAL-------------PVYVANLEGENLYTTTFP-EDCVIVLGNEAN 197 Query: 131 GLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164 G++ E AL+N I+ P SLN++ A ++ Sbjct: 198 GVSPEVAALANGAITIPRFGKLQQAESLNVAMAGGII 234 >gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium] Length = 259 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75 I L + Q N G + R+ F + + +P S K S+A + + + VF Sbjct: 118 IYLSEVQDPGNAGTILRSADAFAM-DAVITSPGSVDMYSPKVVRSTAGS---LWHIPVFE 173 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + + + A + E + L++ SG + +FG E GL+ Sbjct: 174 SWRLEELLNLGLNAFSLGA-----------EGSKSLSQYQMSGDTLA-VFGNEARGLSTA 221 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + A S ++S P+ SLN+S A ++++ Sbjct: 222 QNADSIDVVSIPMPGNAESLNLSAAASIVMYHL 254 >gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 279 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 N+G R+ + LV PR P +A S + R+ + IA Sbjct: 144 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRI-DPWPDGIA--- 198 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144 T R + LA E ++ L+E + + + ++ G E GL E +A + + Sbjct: 199 -----TLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTV 253 Query: 145 SFPVNPLFPSLNISQ 159 P+ SLN++ Sbjct: 254 RIPMAGGVDSLNVAA 268 >gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2] Length = 200 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 54/161 (33%), Gaps = 13/161 (8%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84 N+ + R N+ +L + + + + + +++ ++ Sbjct: 33 PHNLSAIVRTCDAVNVGKLYYRHQKKVKLNNEITMGAHK----WLFTEYVEDIENFYKNI 88 Query: 85 HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 ++ V+ + + + + I+ G E G + I ++ + Sbjct: 89 ---------KEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYADKKV 139 Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185 P+ + SLN+S A ++++E + + + + Sbjct: 140 IIPMYGMSQSLNVSVANAVILYEAQRQRSIKGMYDKPQLSQ 180 >gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] Length = 253 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 87 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 146 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 147 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 192 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E GL+ + ++S P+ SLN S A +++ E E + QN Sbjct: 193 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 250 >gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 382 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 20/164 (12%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEA 80 Q N+G V R+ + + + + +S+ A V+D VF +L Sbjct: 229 QDPMNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLD---VFSADDLPGF 285 Query: 81 IA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 + + + T A A +V + ++ G E GL+ E Sbjct: 286 LKVKSKEGWEVLGTVA-------HAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSPET 338 Query: 137 IALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSS 176 +L +++ P P SLN+S A +++ + + Sbjct: 339 KSLCRRMLTIAPGRELEPGIESLNVSVAAGILLHSICAQKVKAP 382 >gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 239 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 +++ V+IL + + N G + R F + + ++ +S A Sbjct: 84 IKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINY 143 Query: 68 IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 I + V +NL I +L ++YAT+ + E++ Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATSLLKSQPY--------------EKVDYANKTVF 188 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 I G E G++ + ++ I + SLN+ A +++ Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230 >gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342] Length = 265 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1] gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187] gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1] Length = 254 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 210] Length = 324 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183 E GL+ + ++S P+ SLN S A +++ E E E+ Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPPGSER 318 >gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 320 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 +S+ G ++ L + N+G V R++ F + + R + A +SA + Sbjct: 161 SSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLP 220 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + +N+ A+ V+ + V ++ G E Sbjct: 221 VAK-ATNMTRALKQFQ----------KEGYQVVGLDAGGDHTLDTYDGTTPVVVVVGSEG 269 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 GL+ + I+S P+ SLN S A +++ E Sbjct: 270 KGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQR 312 >gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7] Length = 160 Score = 45.4 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + +N + G E GLTNE I S+ +I F P SLN++ A ++++ Sbjct: 94 QEFRHPRNCVYLLGAEDHGLTNEAIEKSHHLIKFDT-PK--SLNVAVAGSIIMY 144 >gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM 44233] Length = 172 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + L + + Q ++ G E+ G+ E + ++ + P+ SLN++ A L+++ Sbjct: 109 VRLADLPVARQRTVMLLGHEQSGVPPEGLDRADLAVEIPMVGTGHSLNVAVAGSLVLYRL 168 >gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264] Length = 265 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 22/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77 Q N+G + R + + L + K S+ + + V+ L Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGNLEEWVDKL 184 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 KE D+ +Y T N + V P + +I G E G+ E + Sbjct: 185 KE--NDVP-VYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 227 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A ++ + P+ SLN++ A ++ + Sbjct: 228 AKTDQNLYIPIYGGAESLNVAVAAGILTY 256 >gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 253 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 26/155 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K + I + NL Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIK--VINDNL----- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136 + R+ FK + P LNE GQ+ ++ G E G++ E Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEI 220 Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170 + +++ + P N SLN++ A ++++ + Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253 >gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 11/161 (6%) Query: 4 YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63 Y + G ++L + Q NIG + R + + + K S Sbjct: 100 YHESIPEKLGGSWLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQG 159 Query: 64 ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 + VR++S A N++N + + + + + Sbjct: 160 SQF---HVRLYS--------GDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFAL 208 Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 + G E G++ + + ++ + P+N SLN++ A ++ Sbjct: 209 VMGNEGNGVSADLLDKTDQNLYIPMNGEAESLNVAVATGIL 249 >gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20] gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30] gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10] gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20] Length = 259 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + GQ I G E G+ E +AL++ + P+ SLN++ A ++++ Sbjct: 203 ELPKGQAAAFILGNEGQGVNQELLALTDKNLYIPIYGQAESLNVAIAAGILMY 255 >gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 517 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 2 TPYAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57 P A L + + +LV ++ N+G + RA + LVN P+++ Sbjct: 266 PPAARPLHDPFGHHAVRAMLVLVGLRIPSNVGALLRAAADMGYDAAVLVN--CADPTQEK 323 Query: 58 RSSSANADCVIDSVRVFSN 76 +++ + ++R++ Sbjct: 324 VLRASDGTALSPTLRIYET 342 >gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14] Length = 272 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 NIG + R+ + L++P P ++ S A + R L DL Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDRWPGDLE 186 Query: 86 FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144 + R L P E A L+E V ++ G E GL+ ++ ++ + Sbjct: 187 PV-----RAAGFTLLALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWV 241 Query: 145 SFPVNPLFPSLNISQ 159 P++ SLN+ Sbjct: 242 RIPMSHGIDSLNVGA 256 >gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39] gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2] Length = 257 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 213 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255 >gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E GL+ E + L+ + PV P SLN + A ++++E Sbjct: 348 AQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDIDSLNSAMAASILLFEGKRQ 406 >gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A] gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo] gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A] gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94] gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94] gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10] gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99] gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686] gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1] gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1] Length = 171 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ + Sbjct: 16 RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 70 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + D A +N + ++ A + +N ++FGRE G+ Sbjct: 71 TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 122 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ +V + E + Sbjct: 123 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 160 >gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2] Length = 250 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 16/150 (10%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 Q N+G + R + +V D + + K S+ + + +R NL + Sbjct: 115 QDPGNLGTMIRTADAAGI-DAVIVGEGSVDAY-NPKVLRSAQGSHFHLPVLR--GNLSDW 170 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I R + + V + S + ++ G E G+ E +A + Sbjct: 171 I----------GRLKESKVPVYGTALENAREYTKYESSDSFALLVGNEGNGVNKELLANT 220 Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170 A + P+ SLN++ A ++++ + Sbjct: 221 AANLYIPIFGKSESLNVAVAAGILLYHLRK 250 >gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 260 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 +++ + G E G++ + + + I P+ SLN + A ++++E Sbjct: 205 KDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVESLNAAVAGSILMYEAARQR 258 >gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109] Length = 286 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + G + I+ G E GLT + ++ P+ P SLN++ A + + Sbjct: 227 VRREQGEGARIAIMVGAEGPGLTEHAMRAADMRAKIPMMPGTDSLNVATAAAIGFY 282 >gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca] Length = 366 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 28/185 (15%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLR----------LVNPRDGWPSEKARSSSANADCV 67 +L Q N+G + R+ + ++ LV P + +SA A V Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLV-PTC-PLTPVVSKASAGAMEV 213 Query: 68 IDSVRVFSN------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 +D VFS L+ + + T + E I + Sbjct: 214 MD---VFSTDDLAGFLQAKAREGWLVAGTVG---CPGPEISPSSEIPITSCLEFLWDRPT 267 Query: 122 GIIFGRERWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSE 177 ++ G E GL+ A +++ P P SLN+S A +++ Sbjct: 268 LLVLGNEGSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPV 327 Query: 178 KNVKE 182 + +E Sbjct: 328 EGKRE 332 >gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9312] Length = 237 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 25/164 (15%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----------- 64 V++L Q N+G + R + + L S+K +S+ A Sbjct: 74 VLVLERIQDPGNMGSLFRTALAAGVDAILLAG-GAHPLSQKVLRASSGAVFHLPFLRFDG 132 Query: 65 --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 + +++S + +L E ++++ F TT+ + + K P I ++ Sbjct: 133 TEEEILNS--LCKSLYE-LSNVGFKIFTTSSHNKSSKKSSKPYW-------EIDWTKSTA 182 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS-QAVLLMV 165 +I G E G+ + N I+ P + L SLN++ AV L++ Sbjct: 183 LILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL 226 >gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021] gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83] gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C] Length = 153 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 33/156 (21%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 I L P + N G + R L+ + ++ P S++ + Sbjct: 1 MNDLRIALYQPDIPGNTGTILRLAACLGLS-VDIIEPAGFDLSDRNLKRA---------- 49 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK----EAAIVLNERIFSG-------QN 120 + +I A T ++++ + ++ + + + + Sbjct: 50 -----------GMDYIAAVTMTRHDSWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPD 98 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 ++FGRE G+ + ++A I P+ P SLN Sbjct: 99 DVLLFGRESAGVPDHVHERADARILIPMAPGQRSLN 134 >gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM 44963] Length = 278 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 16/170 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI- 68 +++ ++IL D N+G + R ++ ++ L + K S+A A + Sbjct: 121 PASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAAGAHLFLP 180 Query: 69 -DSVRVFSNLKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +S + ++E R R + + VL + + + + +I G Sbjct: 181 VESNINWDEIQE-------------RVRAHCQERVLMAEAHSPNVYFDLDLVAPFALIIG 227 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 E G + AL+ ++ P SLN + A ++++E + V+ Sbjct: 228 NEAHGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQRSVAR 277 >gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 265 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAGG-FALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381] gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis ATCC BAA-381] Length = 226 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 22/153 (14%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 +IL + NIG + R+ + + +V+ E +S+ A I R+ + Sbjct: 86 VILWNLSDIGNIGAIVRSAYALGADAICVVS--KNLQIEGVIRASSGAAYEIKIARI-DD 142 Query: 77 LKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 I +L I +A T + + G +I G E G+ Sbjct: 143 GAGLINELKQIGFQIFAATMDGEDI---------------KTAKIGAKTALILGSEGEGI 187 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + + + +S + + SLN+S A ++ Sbjct: 188 PQKIVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220 >gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1] Length = 263 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 25/165 (15%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD- 65 LQ + ++L Q N+G + R+ F TQ+ + S+K + A Sbjct: 108 ALQAQSGIATVVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF 167 Query: 66 --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123 ++++ V +A+ + + T++ P A Sbjct: 168 GLHLVEAASVED--VKALQ-VPLVV-TSSHQGTLIHEADLPWPCA--------------W 209 Query: 124 IFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166 G E G+ + ++ IS P SLN++ A + + Sbjct: 210 AMGHEGQGVGEALMEMAQRRISIAQPGGEE--SLNVAAAAAICLH 252 >gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18] gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18] Length = 344 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 14/168 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73 +L Q N G + R L + D + + RS++ + +I V++ Sbjct: 173 VLSRVQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQL 231 Query: 74 FSNLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIF------SGQNVGII 124 ++ + + A A N A + A + + + + Sbjct: 232 EDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWL 291 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FG E GL EE A + ++ PV SLN+ A + ++ Sbjct: 292 FGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 339 >gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074] Length = 277 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 6/131 (4%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P NIG + R+ F + + K+ ++ + + +VRV + E Sbjct: 125 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRV-PSPAEV 183 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +A + R ++A E Q V ++ G E GL + Sbjct: 184 MAWVER-----RRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVC 238 Query: 141 NAIISFPVNPL 151 + +S P+ Sbjct: 239 DVTVSIPMAGA 249 >gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis] Length = 415 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171 + I+ G E GL+ E + L+ + PV P SLN + A ++++E Sbjct: 348 AQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDIDSLNSAMAASILLFEGKRQ 406 >gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1] Length = 274 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVIDSVR 72 VI++ N+G + R+ F L +P++ KA ++ A +I + Sbjct: 127 VIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKA---ASGALEMIHYIT 183 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 V NL E + +LH + + L E +G+ + ++ G E GL Sbjct: 184 V-QNLAETLQELHKAGFISFGLDSEGNHPL----------ETTLTGEKIALVLGAEGKGL 232 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + A+ + SLN+S A + ++ + Sbjct: 233 RKKTRENVCALTRLDMPGNIKSLNVSNAATIALYAAHK 270 >gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5] Length = 251 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 31/183 (16%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 +++ A + L D Q N+G + R F + + + K ++ A Sbjct: 89 DMRSLAGRLTLALDDVQNPGNLGTIVRLADWFGIADIVCSEASADCFNPKVVQATMGA-- 146 Query: 67 VIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 ++ +++L + D +Y T N + + L + Sbjct: 147 ILRVRVHYTDLGAFLHDAGAAGLPVYGTFLEGENIYGTTLT---------------EEGV 191 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVS 175 ++ G E G++ + P +P SLN++ A ++ E + + Sbjct: 192 VVMGNEGRGISQAAARAVTHKLFIP---PYPTDRRGSESLNVAMATGIVCSEFRRRAGMG 248 Query: 176 SEK 178 S K Sbjct: 249 SGK 251 >gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4] Length = 281 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 20/148 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R +T + L + K +S + + + +L E + Sbjct: 146 QDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQGS--IFHMPVIRGSLIEWVE 203 Query: 83 DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L ++ T+ +++ I +I G E G+ +E + Sbjct: 204 KLKEKNIPVFGTSLTEASSY--------------TAIEPQPEFALIVGNEGEGVQSELLE 249 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166 S+ I P+ SLN++ A ++++ Sbjct: 250 GSDQNIYIPIYGQAESLNVAVATGILLY 277 >gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a] gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC 1b] Length = 254 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F + + + K ++ I V+V ++ Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 D T V + E+ + + I+ G E G+ E L N Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLTANGL-IVMGNEGNGIGKEVATLINR 217 Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251 >gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 508 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 13/151 (8%) Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74 + + P N V R+ F L +L ++ + + S ++ +D VR Sbjct: 57 VTVAMDAPHDPHNGAAVLRSCDAFGLQRLHIIERAEQFLVSNTVSR--GSERWVD-VRTH 113 Query: 75 SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 ++ + A+A+L R + ++A + + S + ++ G ER G+ Sbjct: 114 ASTEAAVAEL----------RASGHELVATHPEGELTPRDLSSIPRLALVLGNERDGIRP 163 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + A + P+ SLN+S +++ Sbjct: 164 DLAAACARAVRVPMRGFAESLNVSVTAAILL 194 >gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN R506] gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475] gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C] gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435] gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46] gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605] gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987] gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503] gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005] gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006] gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007] gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008] gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009] gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A] gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148] gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E GL+ + ++S P+ SLN S A +++ E E + QN Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 319 >gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056] Length = 253 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 29/161 (18%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80 Q N+G + R F + +P + K ++ I V++ +++L E Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDVYNPKTVQATMGG---IARVKLHYTSLPEL 167 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 I L V + + S + I+ G E G+ NE L Sbjct: 168 IGSL------------KDIPVYGTFLDGANMYTQPLSAHGL-IVMGNEGNGIGNEVEQLI 214 Query: 141 NAIISFPVNPLFPS-------LNISQAVLLMVWECMENSIV 174 N + P +PS LN++ A ++ E + + Sbjct: 215 NRKLYIP---NYPSERETSESLNVAIATAVVCAEFRRQAAL 252 >gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130] gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130] Length = 210 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179 + G E L+ + + II P LN++ A +++++ M++ +E+ Sbjct: 97 RAAYLLGPENGSLSPDAMEKCEFIIKIPTA---FCLNVATAGAVIMYDRMQSLGRFAERP 153 Query: 180 VKEQNTPATKGELLSFLDYL 199 V+ +T +L Sbjct: 154 VRAGGPVSTHTA--PMATHL 171 >gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074] gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074] Length = 286 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 6/131 (4%) Query: 21 DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80 P NIG + R+ F + + K+ ++ + + +VRV + E Sbjct: 134 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRV-PSPAEV 192 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 +A + R ++A E Q V ++ G E GL + Sbjct: 193 MAWVER-----RRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVC 247 Query: 141 NAIISFPVNPL 151 + +S P+ Sbjct: 248 DVTVSIPMAGA 258 >gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales bacterium GD 1] Length = 226 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 13/149 (8%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++L NIG + R + + + + R+S+ + +++ Sbjct: 85 VLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIKKLNFEPVMRTSTGALFDMPFALQ--H 142 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 N+ + + DL T+ + + + + Q ++ G E GLT+ Sbjct: 143 NIHDVMNDLK----TSG------FCIYGADMGGTDIRD-VKIKQKRALVLGNEGEGLTSR 191 Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164 ++ + ++S ++ F SLN+S A ++ Sbjct: 192 IVSKLDEVVSIQMSHDFDSLNVSVAGAIL 220 >gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97] gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293] gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26] Length = 265 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401] gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 345 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79 N+G + R+ +F + +V S A ++ A+ V I + + L + Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264 Query: 80 AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 + + T++ K + + + ++ G+E GL + Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310 Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + LNIS A +++ E Sbjct: 311 NDLRMKIDGTGNVAGLNISVATGVLLGEWWRQ 342 >gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 253 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 26/155 (16%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q NIG + R + + L + K + + I + NL Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136 + R+ FK + P LNE GQ+ ++ G E G++ E Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEI 220 Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170 + +++ + P N SLN++ A ++++ + Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253 >gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973] Length = 278 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 24/156 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F +T L + A + +V +IA Sbjct: 138 QDPGNLGTIIRIADWFGITTLF-----CSPDTADAY-----------NPKVVQATMGSIA 181 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLTNEEIAL 139 + +Y T ++ + P ++ E I+ +N I+ G E GL+ + Sbjct: 182 RVRLVY-TDLKDLLDALHPDTPVYGTLLNGEDIYQQSLSRNGLIVMGNEGKGLSKAIASR 240 Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMEN 171 + P P SLN++ A ++ E Sbjct: 241 VTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRRR 276 >gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17] Length = 270 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 24/163 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R F +T + + A + + +IA Sbjct: 123 QDPGNLGTIIRIADWFGITDIV-----CSEDTADAY-----------NPKTVQATMGSIA 166 Query: 83 DLHFIYA-TTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139 +Y +A + V + E+ + V II G E G++ E Sbjct: 167 RTKIVYTDLSAYLESLPNETPVYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRY 225 Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSEK 178 N + P P SLN++ A + E S++ + Sbjct: 226 INHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTR 268 >gi|317507017|ref|ZP_07964783.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] gi|316254684|gb|EFV13988.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974] Length = 105 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 17/98 (17%) Query: 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIAL 139 AR R+ V A + A + L G+ +FG E GL Sbjct: 7 ARERDVAAGVAALRTAGLRLFATTADGELPLGRAGSELSGPCAWLFGNEAHGLPEPVARA 66 Query: 140 SNAIISFPVNPLFP-----SLNISQAVLLMVWECMENS 172 ++ ++ P+ P SLN++ A + ++E Sbjct: 67 ADHRVAVPMRPAAGFAPPESLNLAVAAGICLYETARLR 104 >gi|254994521|ref|ZP_05276711.1| hypothetical protein LmonocytoFSL_17202 [Listeria monocytogenes FSL J2-064] Length = 113 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 22/124 (17%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 I+L P++ N G ++R L L+ P +K + D+V++ Sbjct: 5 IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60 Query: 74 FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + +L E F Y T + V + + ++ +FG+E Sbjct: 61 YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108 Query: 131 GLTN 134 GL + Sbjct: 109 GLPD 112 >gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae] Length = 298 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFP 147 R+ L P A L + + V ++ G E GLT + ++ P Sbjct: 213 RDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEHAMRATDQRARIP 272 Query: 148 VNPLFPSLNISQAVLLMVWE 167 + SLN++ + + +E Sbjct: 273 MASGTDSLNLATSAAIAFYE 292 >gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1] gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila SL1] Length = 271 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%) Query: 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154 R+ V+ A + + ++ G E GL + ++ P+ S Sbjct: 186 RDAGVHVVGAAGEAEKSCYEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMES 245 Query: 155 LNISQAVLLMVWECMENSIVSSE 177 LN+S A ++++E + Sbjct: 246 LNVSVAAGVLLFEAVRQRFPQGG 268 >gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS 2060] Length = 154 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 11/154 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L P + +N G + R + ++ P S++ S +D V + Sbjct: 6 LFQPDIPQNTGTMLRLAACLGAA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVTIT---- 58 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 F A A R ++ A + + G + ++ GRE G+ A Sbjct: 59 ---RHCSFS-AFEAWRREAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHA 114 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 ++A + P+ SLN++ A +++ E M + Sbjct: 115 AADARVVIPLRAGLRSLNVAVAAAMILGEAMRQT 148 >gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans] Length = 584 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP----VNP-LFPSLNISQAVLLMVWECMENSI 173 ++ G E GL + L++ + P VN SLN+S A L+ +E ++ Sbjct: 513 HPTILMMGAESSGLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYEMLQRPR 572 Query: 174 VSSE 177 + Sbjct: 573 TQPD 576 >gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 595 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 49/210 (23%) Query: 1 MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59 + P L KGP+ + L + +N+G + R+ + F ++ + L S Sbjct: 387 IKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSK 446 Query: 60 SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERI 115 +SA + +++ +R N+ + + T+ + N VL +P+ AI LNE I Sbjct: 447 ASAGSLELME-LRFCKNMMQFL--------TS--SAENGWQVLGGSVSPR--AIPLNE-I 492 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN------------------------PL 151 G ++ G E GL +I P N Sbjct: 493 SPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVEDVDTSEMDRRCLTED 552 Query: 152 FP------SLNISQAVLLMVWECMENSIVS 175 F SLN+S A +++ + NS + Sbjct: 553 FQSFLAVESLNVSVAAGVLLHHLVGNSYEN 582 >gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758] Length = 159 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71 K +++L + Q N+G + RA +T + + + + K S+ + + V Sbjct: 9 RKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSVYRMPFV 68 Query: 72 RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +L E + + A A ++ + + G E G Sbjct: 69 -YVEHLPETLE----VLA------EAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNG 117 Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 L +E ++ I P+ SLN + A ++++E Sbjct: 118 LRDEVADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158 >gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 333 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 14/168 (8%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73 +L Q N G + R L + D + + RS++ + +I V++ Sbjct: 162 VLSRVQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQL 220 Query: 74 FSNLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIF------SGQNVGII 124 ++ + + A A N A + A + + + + Sbjct: 221 EDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWL 280 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 FG E GL EE A + ++ PV SLN+ A + ++ Sbjct: 281 FGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 328 >gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168] Length = 270 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 20/166 (12%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 N +G ++IL Q N+G + R + + + + K +S A Sbjct: 111 FHNRNRGIILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGA--- 167 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----ERIFSGQNVG 122 +F ++ + + F R + K LN I + + Sbjct: 168 -----IF-SIP-ILTGVSF-----KRLQKIRDEYPDYKLICTDLNTSKFYHEIDYQEPLM 215 Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 ++ G E G+ E ++L++ I P+ SLN + + +++++ Sbjct: 216 LVIGNEARGIREELLSLADIKIKIPLMGNIDSLNAAVSTAIVLYDI 261 >gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus DSM 13965] Length = 286 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 32/87 (36%) Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 V + A + + ++ G E G++ + ++ P+ SLN++ A Sbjct: 198 VWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQATGRVAIPLAGGIGSLNVAMA 257 Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPA 187 ++++E + S Q A Sbjct: 258 GTILLYEAARQAANSGSGPGTGQGAGA 284 >gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426] gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426] Length = 251 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 12/147 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + + L + K ++ + + V +L + I Sbjct: 114 QDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 AR + V V + + ++ G E G+ + + L+ Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTTE 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169 + P+ SLN++ A ++++ Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248 >gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1] Length = 295 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E V +I + + G E G++ + + I++ P+ SLN S AV + + Sbjct: 217 EHGAVPLPKITFDRPTVFVVGSEGEGISLQTQKHCDEIVAIPLAGRTNSLNASVAVGIAL 276 Query: 166 WECMENSIVSSEKNVKEQN 184 +E + + + + Sbjct: 277 YEINCQRSPAWDLTQEPRG 295 >gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium baculatum DSM 4028] Length = 251 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 ++ G E G+ ++S P+ F SLN++QA +++ E + + Sbjct: 198 PAVLVLGNEDKGMRPNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQRL 251 >gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog [Oryctolagus cuniculus] Length = 346 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 22/173 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76 +L Q N+G V R+ + + + + R P + +SA A V+D VFS Sbjct: 152 VLDGLQDPRNLGAVLRSAHFLGVDK-VITSRRSSCPLTPVVSKASAGAMEVMD---VFST 207 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPK--------EAAIVLNERIFSGQNVGIIFGRE 128 DL AR + P E + + ++ G E Sbjct: 208 -----DDLAGFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNE 262 Query: 129 RWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSE 177 GL+ E A +++ P P SLN+S A +++ Sbjct: 263 GSGLSQEVQASCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQRKALPA 315 >gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp. type_1 str. 28L] Length = 250 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E G++ + ++ P+ SLN S A L+++E + + +EK Sbjct: 195 LVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYETVRQRGIGTEK 250 >gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226] Length = 257 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHKTAFKAEGI-LLMGSES 213 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255 >gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1] Length = 297 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 15/176 (8%) Query: 3 PYAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60 P A +A G P+II V +N+G + R F L + P KA Sbjct: 135 PSAADTIAAAGGRPIIIAVGLSNHDNLGAIFRNAAAFGAGA-VLCDTTSCHPLYRKALRV 193 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 S + R + +A R L+P + + + Sbjct: 194 SVGTALTVPWCR-EGTGESLVAAC--------RAAGYRVLALSPAGETPLAG--LVTAGR 242 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 + G E GL+ + + + + + P SLN++ + +++ ++ Sbjct: 243 TALCLGAEGQGLSPD-LMRAVETVRIEMAPGLDSLNVATSAAIVLHRLFAGEGTAA 297 >gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 27/168 (16%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 Q + G ++L + Q NIG + R T + + + + K + + Sbjct: 103 QFPDDLSGKWLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAMQGSQY 162 Query: 67 VIDSVRVFSNLKEAIADL----HFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSG 118 + R+ NL++ I + I+ + AR+ ++ + P + Sbjct: 163 HLQLKRL--NLEKWIRNCKDQGSVIFGSILDENARD---YRKIDVPDQF----------- 206 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +I G E G++ I +++ + P+ SLN++ A ++++ Sbjct: 207 ---SLIMGNEGNGMSERLIEMTDMNLYIPIKGSAESLNVAVAAGVLMF 251 >gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB] Length = 164 Score = 45.1 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 I L +P+ EN+G + RA + + + + K + + D+ +V Sbjct: 20 CIGLYNPKGPENVGSIMRAAGCYGVN--------TVFYTGKRYERAV--EFRTDTKQVHL 69 Query: 76 NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134 L + DL + + A L E + IFG E L Sbjct: 70 QLPLIGVEDLQQVI-----PFGCVPVAIEVHPDAKPLTEYQHP-ERAFYIFGPEDGSLKK 123 Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I+ P + +N++ V ++++ Sbjct: 124 NVTSWCKDIVYIPTHGC---MNLAATVNVVLY 152 >gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3] gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3] Length = 177 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 64/153 (41%), Gaps = 23/153 (15%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 LV+P+ N+G + RA + V+ + + + K +A+ + + ++ K Sbjct: 10 LVNPKSPTNVGGIMRAA---GCYR---VD--EVFYTGKRYPLAASNG----TAQYNTDTK 57 Query: 79 EA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 A ++ + + A + E AI L E + + +FG E ++ Sbjct: 58 GAGQQIPLSGVESLI--DAGPDGVKIICVDLVEGAIPLPEFEHPAKAI-YVFGPEDGTIS 114 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + I ++A++ P +N++ +V ++++ Sbjct: 115 QQVINRADAVVYVPT---VGCMNLAASVNVLLY 144 >gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879] Length = 235 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 29/157 (18%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRV 73 ++L NIG + R + + + + + RD + E SS+ A +++ Sbjct: 86 VVLCGMSDIGNIGAIVRTAYALGIGGIVISD-RDTLNTQALEGIFRSSSGA--LLNMPFS 142 Query: 74 F--SNL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127 F S+L + + I A N K++L + I GR Sbjct: 143 FHKSSLSVANEAKMKQFTLIGA-----GKNNKNILE------------STPNKWAIFIGR 185 Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164 E GL + + + + + F SLN S A ++ Sbjct: 186 EDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGIL 222 >gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM 15894] gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 6/160 (3%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 ++L P N+G + R+ F +V P + + V + Sbjct: 119 VVLDRPTQPGNVGSIIRSADAFGAHG-VIVTGHGADPYDPRAVRATTGSLFAVPVVRAPS 177 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 +E + + A R +V+A E V + V ++ G E GLT Sbjct: 178 HREVL---DQVAA--WRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAW 232 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176 ++A+ S P+ SLN + A ++++E V Sbjct: 233 RESADAVASIPMVGAASSLNAANAASVVLYEARRQRAVPR 272 >gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp. indica ATCC 9039] Length = 179 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 11/165 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + ++ L P + +N G + R + + ++ P S++ + Sbjct: 11 ERPEAKPSLMLALYQPDIPQNCGTMLRLCACLGV-EAAIIEPAGFPVSDRHFRRA--GMD 67 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +D V A++ A A + ++ A + ++ G Sbjct: 68 YLDQV--------ALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMG 119 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 RE G+ A ++A + P+ P SLN++ A +++ E + Sbjct: 120 RESAGVPEAVHASADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 164 >gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895] gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895] Length = 348 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81 N+G + R+ +F + +V S A ++ A+ V I + L + Sbjct: 211 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 269 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 + I T++ + K + + A + ++ GRE L + Sbjct: 270 QAGYTIVTTSS---DQGKPLFSTALPA-----------KMVLVLGRELESLPEAAREPGD 315 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + +LN+S A +++ E Sbjct: 316 LCVKIDGTGNVENLNVSVATGVLLGEWWRQ 345 >gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM 18011] Length = 252 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 27/158 (17%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81 Q N+G + R F + + + K ++ + V++ +++L E I Sbjct: 112 QDPGNLGTIIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGG---LARVKIHYTSLTEII 168 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 +N + + ++ + + II G E G+++E L + Sbjct: 169 K------------QNPNIPIYGTFLDGENIYDKQLEQKGL-IIMGNEGKGISDELQELVS 215 Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172 + P +P SLN++ A ++ E + Sbjct: 216 HKLYIP---NYPMNKESAESLNVAIATAIVCSEFRRQA 250 >gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199] Length = 153 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 21/167 (12%) Query: 18 ILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73 +L P + +N G + R A + ++ P SE + ++ V Sbjct: 4 VLFQPDIPQNAGTILRLAACVGVGVD---IIEPCGFVWSEPRLRRA--GMDYLEFATVAR 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 S+ + +A R+ + L A L + F + ++ GRE G+ Sbjct: 59 HSSWEAFLA-----------ARSPGRLALLTTRGATPLPDARFENDDH-LVLGRESAGVP 106 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180 + ++ + P+ P SLN++ +++ E + + Sbjct: 107 DALHTAADLAVRVPMVPGARSLNVAVTAGMVLAEALRQTAGWPAAPA 153 >gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8] gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855] gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8] Length = 187 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 62/186 (33%), Gaps = 16/186 (8%) Query: 3 PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61 P ++ K PV +++ + + N+G + R + + L + ++ Sbjct: 12 PAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHKDLHKTA 71 Query: 62 ANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 A ++ + L++ + D + A + + + AP Sbjct: 72 LGAQDAVEWSQHDEPRPLLRD-LKDAGYTIAALEQTDHTQRPDAAP-----------ADA 119 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 + ++ G E G+ + + + + P SLN+ A + V++ + S Sbjct: 120 FPIALVVGNEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRRSRTLLGP 179 Query: 179 NVKEQN 184 E Sbjct: 180 PGDEDR 185 >gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)] gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4] Length = 244 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 257 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 19/143 (13%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86 N+G + R+ FN+ ++ +V R E + I ++ F N+ E + + Sbjct: 65 NVGCIVRSCVAFNVHKIFIVGKRKK---EINFFGNMGTYDYI-TIEYFDNIYE-LKEY-- 117 Query: 87 IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146 + A+ + + ++ +FG E G+ + + + + II Sbjct: 118 -----LTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLKICDKIIYI 172 Query: 147 PVNPLFP----SLNISQAVLLMV 165 P + SLN+S + +++ Sbjct: 173 P---QYGKGTASLNVSVSCAIIL 192 >gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516] gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516] Length = 243 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 20/143 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI----DSVRVFSNLKEA 80 N+G + R+ F + L + + K S+ + I +S+ V N K Sbjct: 107 PGNLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESIHVLENYKS- 165 Query: 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140 N FK E I + +I G E G+++E + Sbjct: 166 ---------------NGFKIYETSLEKNSKSILEIKDKEKHVLIIGNEANGISDEIKKYA 210 Query: 141 NAIISFPVNPLFPSLNISQAVLL 163 + + P++ + SLN S A L Sbjct: 211 DEFLIIPMDNVTESLNASIAASL 233 >gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 257 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 13/169 (7%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSS 61 P A ++ + +G ++L Q N+G + R +V R K S Sbjct: 98 PDAHRVPANIQGAWLLLDRVQDPGNVGTMVRTADAAGFAG-VVVGNRSADLFGPKVVRSM 156 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + + + +L + + D I A A ++ G Sbjct: 157 QGSQFHL--TLLEGDLHKWVQDFKRIGA---------PVYGTQLNPAAQNFRKVHPGPTF 205 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 +I G E G+ + +A + + P+ SLN++ + +++++ + Sbjct: 206 ALIMGNEGQGMAADLLAETTTNLYIPMRGDAESLNVAVSAGILMFQLNQ 254 >gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550] Length = 265 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 22/149 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77 Q N+G + R + + L + K S+ + + V+ L Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGNLEEWVDKL 184 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 KE D+ +Y T N + V P + +I G E G+ E + Sbjct: 185 KE--NDVP-VYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 227 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166 A +N + P+ SLN++ A ++ + Sbjct: 228 AKTNQNLYIPIYGGAESLNVAVAAGILTY 256 >gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis] Length = 1848 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 11/158 (6%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIAD 83 N+G + R F Q+ +V+ + +S S A + V L+E + Sbjct: 1700 PSNLGGLTRTCEVFGAEQM-IVHSLSCTSDKLFQSLSVTAHKWLKMSEVKRWELEEYLES 1758 Query: 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + R + V + V I+ G E+ G+ + + +A Sbjct: 1759 M---------KRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSAC 1809 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181 I P + SLN+ + + VWE ++ ++ K Sbjct: 1810 IEIPQVGVVRSLNVHVSGGITVWEFTRQKLLRLSQSTK 1847 >gi|33322913|gb|AAQ07193.1|AF496501_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis] Length = 115 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%) Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 + ++L +AIA L A + + S+L P A V +I G E G+ Sbjct: 28 IKADLPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGV 78 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + E AL++ + P+ SLN + A +M++ Sbjct: 79 SPEIAALADEKLYIPIKGRAESLNAAVAAGIMIY 112 >gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93] Length = 244 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis] gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis] Length = 301 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 40/192 (20%) Query: 11 SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68 S V+ L + Q N G + R W + + +V P+ S +SA A V Sbjct: 125 SLHPLVLALDEIQDPMNFGAIIRTSWLLGVDK--IVVPKQNSAPLSPVVSKASAGAMEVF 182 Query: 69 DSVRVFSN------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121 + V+ L+E A + A + + V + Sbjct: 183 N---VYQTPDLPKFLQERAAIGWDVLGA--------VQPITDDSHHRPVNCAEYSLSKPT 231 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFP-------------SLNISQAVLLMVWEC 168 ++ G E GL N ++S +P S N+S A ++V+ Sbjct: 232 VLVLGNEGRGLRNTVQQQCTQLLSI-----YPHQAQNSFQSIDLDSFNVSVAAGILVFSL 286 Query: 169 MENSIVSSEKNV 180 ++NS + EKN+ Sbjct: 287 LKNSYSTQEKNL 298 >gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC 27029] Length = 275 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ P+ NIG + R+ F + + + KA ++ + + VRV Sbjct: 120 VVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRV-P 178 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + ++ + ++ A A + ++ E V ++ G E GL+ Sbjct: 179 SHRDVL---DWVAAVRA-DGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKG 234 Query: 136 EIALSNAIISFP 147 S+ ++ P Sbjct: 235 WQEASDRMVRIP 246 >gi|270668311|ref|ZP_06222520.1| RNA methyltransferase, TrmH family [Haemophilus influenzae HK1212] gi|270316702|gb|EFA28486.1| RNA methyltransferase, TrmH family [Haemophilus influenzae HK1212] Length = 110 Score = 44.7 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74 I+L +P++ +N G + R N +L L+ P +K S + + Sbjct: 4 IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60 Query: 75 SNLKEAIA 82 + + Sbjct: 61 KTFEAFLE 68 >gi|294101557|ref|YP_003553415.1| tRNA (guanine-N1)-methyltransferase [Aminobacterium colombiense DSM 12261] gi|293616537|gb|ADE56691.1| tRNA (guanine-N1)-methyltransferase [Aminobacterium colombiense DSM 12261] Length = 419 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 31/157 (19%) Query: 31 VARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN------ADCVIDSV------RVFSNLK 78 ++R+ + L + +V P E A++ +A+ A + L Sbjct: 265 ISRSCRTYGLRKFLVVTPLKSQR-ELAKTMAAHWVKGYGASFNPSRAEAFKTMKTVPTLD 323 Query: 79 EAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131 +AI + + TTAR + L K + S + V +FG G Sbjct: 324 KAIEWIKSKEHEEPLVVGTTARACSGAIHWLEMK------RTLLESQKPVLFVFGT-ASG 376 Query: 132 LTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMV 165 L E + ++ P++ + L++ AV +++ Sbjct: 377 LHKEVTERCSVLLQ-PLSGGKEDYNHLSVRTAVGVIL 412 >gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 280 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 114 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 173 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 174 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 219 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E GL+ + ++S P+ SLN S A +++ E E + QN Sbjct: 220 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 277 >gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M] Length = 262 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 16/151 (10%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65 L ++ I+L Q N+G + R+ + Q P + S K S A Sbjct: 106 PLPDTVAQTCIVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 164 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125 ++ ++ +++ A T R V+ + +F Sbjct: 165 FLL---QIHEDVE----------AQTLIERLAVPVVIT-DSHGAEAIYDCDLSAELAWVF 210 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLN 156 G E G++ ++ P SLN Sbjct: 211 GNEGAGVSQAWRDAVTLRVTIPQPGGMESLN 241 >gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma] Length = 119 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +I ++ II G E G+ + + ++ P+ SLN+S A LM++ Sbjct: 59 QIPKNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIY 111 >gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341] Length = 244 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242 >gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827] Length = 282 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +FG E GL +E + + + P+ SLN++ A + ++ Sbjct: 226 AHPTAWVFGSEAHGLPDEVVTSLDGALKVPLYGGAESLNLATAAAVCLY 274 >gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans SRS30216] Length = 264 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 3/162 (1%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + V +L + N G V RA + L + K S+A + Sbjct: 94 DVLAARPRLVAVLDRVRDPGNAGTVLRAADAAGADAVVLTEGSVDPFNPKCVRSTAGSLF 153 Query: 67 VIDSVRVFSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124 + V L +A+ L +T A + AA + + + + + Sbjct: 154 HLPVVVGVP-LADAVTALRRAGSTVLAADGEGDLDLDDLADAAARGVVDGVDLRRPTAWV 212 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 FG E GL L++A++ P++ SLN++ A ++ ++ Sbjct: 213 FGNEAAGLDAAGRGLADAVVRVPLHGRAESLNLATAAVVCLY 254 >gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330] Length = 246 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 13/147 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + + + K S + + V A Sbjct: 111 QDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLP-VYRMDT-----A 164 Query: 83 DLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 D + R++ +L + A + + S ++ ++ G E G++ E A ++ Sbjct: 165 DFIRLA------RSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGISPEMTAAAD 218 Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168 +I + SLN++ A ++++ Sbjct: 219 ILIHISMRGQAESLNVAVAAGILIFHL 245 >gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii A14S] Length = 246 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 13/154 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 L + + +N+G + R F++ L + R + +S+ A + + V + Sbjct: 101 LDEIEDPQNLGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKITVAN-- 157 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 I + ++ F + A +N+ + + + +I G E G+ Sbjct: 158 ---INNTIIFL-----KKHGFW-IYASDIKGQDINKIKINDKKIALILGNEGKGVHKLIK 208 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ +I P + SLN+S + ++++E Sbjct: 209 QNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242 >gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 316 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 17/162 (10%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 E GL+ + ++S P+ SLN S A +++ E Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 303 >gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 170 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 28/156 (17%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVR 72 VI L++P+ N+G V RA + + + A+ + V++ + Sbjct: 7 VIGLINPKSPTNVGGVLRAA---GCYD----AKQVFFTGNRYLNAKKFHTDTKNVVERIP 59 Query: 73 VFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 + L EAI + V+ E A L E +N +FG E Sbjct: 60 LTETDNL-EAIK-----------PQGATVVVIELIEGATPLPE-FKHPENAFYVFGPEDG 106 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 ++ + + + ++ P +N++ ++++ Sbjct: 107 SVSKDVLKWCDEVVYIPT---IGCMNLAATCNVVLY 139 >gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus kowalevskii] Length = 445 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 120 NVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I+ G E GL+ + + L++ + P+ SLN + A ++ +E + Sbjct: 379 KSAIVIGGETHGLSKQAVDLADETYGYKVHIPMAFGMDSLNAAMATSVVTFEAKRQYL 436 >gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 296 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 + ++ L + N+G + R++ F + + R + A +SA A I Sbjct: 130 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 189 Query: 70 SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 R + LK + A + + ++ ++ G Sbjct: 190 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 235 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184 E GL+ + ++S P+ SLN S A +++ E E + QN Sbjct: 236 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 293 >gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote HF70_59C08] Length = 234 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 14/150 (9%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G R + L + W S+ ++ + + + Sbjct: 97 QYQTNVGFCIRVAEVSGASGLIVTG---EWTSDDRHR-------IVRAAMRTNRFMPVVF 146 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 + A ++ VLA ++ +V +I G E G++ E + +++ Sbjct: 147 GCDELEAL----KSWKGRVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLEVADQ 202 Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172 I P+ PS N+ + ++ E + Sbjct: 203 TIRIPMAGFTPSYNLQAPMAVVAVEALRQR 232 >gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium haemolyticum DSM 20595] Length = 327 Score = 44.7 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 G ++ L N+G R+ F + + R + SA A + R Sbjct: 170 PGLIVALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATVWKVSAGAAARVPVAR 229 Query: 73 ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + L++ A +F+ + +V A + L I+ G E Sbjct: 230 ETNLVRALEDLKAQGYFVVGL---DGGGDATVDTLDMADVPLV----------IVTGSEG 276 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 GL+ + I S P+ SLN + A + +++ Sbjct: 277 KGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALYQI 315 >gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366] gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366] Length = 249 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 22/173 (12%) Query: 3 PYAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60 P P + + + +L Q N+G + R F + N + K + Sbjct: 92 PEPPLFKPATPKNLFSLVLDGVQDPGNMGTIIRTADWFGFKNIICSNNCVEVYNPKTVQA 151 Query: 61 SANADCVIDSVRVF-SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118 + + + V +F +L + ++ ++ ++ +K G Sbjct: 152 TMGS---LSRVNIFYEDLPGILTNVKLPVFGAVLDGKSIYK---------------TDWG 193 Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 +I G E G+T + L ++ P SLN++ + ++ + N Sbjct: 194 NEGLVILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAISAAILCADISRN 246 >gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales bacterium Y4I] Length = 258 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 12 AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70 + P ++L+ N+G + R+ + ++ R + + + + A ++ Sbjct: 106 REAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 162 Query: 71 VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIF 125 NL + I +L N VL A E G+ V ++ Sbjct: 163 QPYLRMRNLADTITELQ----------NMGFIVLGLDGEAEQTIETALEGKQHLPVALVL 212 Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 G E GL + +A++ F SLN+S A + ++ Sbjct: 213 GAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAAIALY 253 >gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Gluconacetobacter diazotrophicus PAl 5] Length = 233 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 43/179 (24%) Query: 12 AKGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRLVNPRDGWPSEKARS- 59 GP+++L N+G + R+ M R+ A + Sbjct: 82 RPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME------------RNAPDETGALAK 129 Query: 60 SSANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERI 115 +++ A ++ V + L +A+ L F + +L+ Sbjct: 130 AASGALEIVPLGAVVNLARTL-DALKSLDFWVVGL--------------DAGGGILDGTS 174 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174 F + V ++ G E GL + I + SLN+S A + ++E + Sbjct: 175 FGQRRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIRRGKA 233 >gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5] gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5] Length = 275 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75 V++ P+ NIG + R+ F + + + KA ++ + + VRV Sbjct: 120 VVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRV-P 178 Query: 76 NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135 + ++ + ++ A A + ++ E V ++ G E GL+ Sbjct: 179 SHRDVL---DWVAAVRA-DGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKG 234 Query: 136 EIALSNAIISFP 147 S+ ++ P Sbjct: 235 WQEASDRMVRIP 246 >gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134] gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134] Length = 255 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 29/170 (17%) Query: 2 TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSS 60 TP AP QN ++L Q N+G + R + + L +P + K +S Sbjct: 101 TPIAPLAQNEY---ALVLDGIQDPGNLGTIVRIADWYGIRS-ILCSPDTVDVYNPKVIAS 156 Query: 61 SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-----LNERI 115 + + +++L+ F S+ APK L+E Sbjct: 157 CMGS--FLRVNIHYTDLEA-----------------YFPSLAAPKVYGAFLDGANLHEWS 197 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 F + I+ G E G+ + I+ P SLN++ A ++ Sbjct: 198 FPKEAGYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNVAMATAIIC 247 >gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM 20109] Length = 168 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152 R R + + E ++ L + + ++ G E+ G+ E + L + ++ P+ Sbjct: 89 RERGSAVVGVELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALDLLDVVVEIPMVGTG 148 Query: 153 PSLNISQAVLLMVWEC 168 SLN++ A L+++ Sbjct: 149 ASLNVAVAGSLVLYRL 164 >gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586] Length = 244 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69 A+G +I L N+G + R + ++ + + K S++ + + Sbjct: 97 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156 Query: 70 SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 +V +L + +A + V + +++ F + + ++ G E Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ + I+ P SLN++ A +++ Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242 >gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str. MIT 9303] Length = 275 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 7/180 (3%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 PQ N AK V+ L Q N+G + R + + L S K +SA Sbjct: 99 DSLPQAVNQAKF-VLALDRLQDPGNLGTLLRTALAAEVEAVWL-ASGADPLSPKVLRASA 156 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQ 119 A + R S+ +EA+ L A + + P +A ++ + Sbjct: 157 GAILQLPHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRK 216 Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVWECMENSIVSSEK 178 ++ G E GL ++ P + SLN++ AV + ++ E ++ S + Sbjct: 217 PTVLVLGNEGSGLHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLLERRRATMTFSTQ 275 >gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 17/125 (13%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81 N+G + R F +T +V P+ A+S+S + V + + NL EA+ Sbjct: 16 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 71 Query: 82 ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 T R + L + A + I + + G E GL + Sbjct: 72 --------ITLGERGFTRIGLDSE--AGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCD 121 Query: 142 AIISF 146 ++ Sbjct: 122 VLVRI 126 >gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 60 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177 G E G+ + ++ P+ SLN+S A + ++E + V + Sbjct: 5 GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 56 >gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+] gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+] Length = 680 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 15/191 (7%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72 K V++L N+G + R++ F + + N + A +SA A + V Sbjct: 491 KPLVVVLDRILDPVNLGAILRSVGFFGAAAVAITNYGGTKITPVALKASAGAA---EEVT 547 Query: 73 VF--SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 +F ++L E + +YA A+ + I + + V ++ G Sbjct: 548 IFGINSLPEFLNASRANGWEVYAAVAQEPGATRQRRQVDLFDIEKTDPLKRTPCV-LLLG 606 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM--ENSIVSSEKNVK 181 E GL + ++ ++ P SLN++ A L+ + V ++ + Sbjct: 607 SEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGALLCASFLKGMQKAVLKKEAAE 666 Query: 182 EQNTPATKGEL 192 E TK L Sbjct: 667 EDGEEVTKETL 677 >gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia] Length = 261 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 24/154 (15%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81 Q +N G + R + + +V + P S +SA A ++ + +F + + Sbjct: 114 QDPQNFGAILRVCFFLGINT-VIVEKKGQCPLSPTVSKTSAGA---LELMNIFET--DNL 167 Query: 82 ADLHFIYATTARNRNNFKSVL----APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 A+ + R + V+ I ++ + IIFG E G+ E Sbjct: 168 ANFV-------KQRKHEFQVIGSGFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELF 220 Query: 138 ALSNAIISFPVNPL-FP-----SLNISQAVLLMV 165 + I++ + FP SLN+S + +++ Sbjct: 221 KQCDTIVNIMTSRHTFPETLVDSLNVSVSAGIIL 254 >gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H] gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H] Length = 180 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANAD 65 L +++L + NIG R F + + +V G S+K ++ Sbjct: 23 LTKPKIPLIVVLDNVTNSYNIGAFIRLADAFAIEK-VIV---CGALTISDKKMKKASR-- 76 Query: 66 CVIDSVRVFSNLKEAIADLHFIYATTARNRNN--FKSVLAPKEAAIVLNE--RIFSGQNV 121 + + + + +TTA + + E + ++ Sbjct: 77 ---NEAKWVC--------VEYSDSTTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKC 125 Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ G ER G++ + LS I P+ + SLN+S A +++ EC Sbjct: 126 VLVLGNERKGVSEAALKLSLQQIHIPMFGMGNSLNVSTAGAIVLAECANQ 175 >gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L] gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L] Length = 254 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVRQEVLAKTDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus] Length = 354 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 20/181 (11%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P LQ I Q N+G + R + L + + K +S Sbjct: 170 PLPPTLQTVLICDGI-----QDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASM 224 Query: 63 NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122 A + S+R+ + +E + + R R + A A + + Sbjct: 225 GASFRLPSLRL-ESWQEVVELM--------RARGIR--MYAADGGARLSHFDADWTSPSA 273 Query: 123 IIFGRERWGLTNE---EIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178 ++ G E GL++ E+ +S P+ SLN + A +++ E +V+ Sbjct: 274 LVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQRLVAERH 333 Query: 179 N 179 + Sbjct: 334 D 334 >gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551] Length = 252 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 22/152 (14%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81 Q N+G + R + + +V + K S+ A + V+ +L E I Sbjct: 116 QDPGNLGTIIRTADAAGV-EAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK--GDLLEMI 172 Query: 82 ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 + L +Y T+ +N + V ++ G E G++ + + Sbjct: 173 SLLKEREIAVYGTSLQNGKVYTCV--------------KPSNEFALVVGNEGNGVSEKVL 218 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ + P+ SLN++ A ++++ Sbjct: 219 EQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL Length = 160 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78 L P + +N G + R + + ++ P S++ + +D V Sbjct: 4 LYQPDIPQNCGTMLRLCACLGV-EAAIIEPAGFPVSDRHFRRA--GMDYLDQV------- 53 Query: 79 EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 A++ A A + ++ A + ++ GRE G+ A Sbjct: 54 -ALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHA 112 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++A + P+ P SLN++ A +++ E + Sbjct: 113 SADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 145 >gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 265 Score = 44.7 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + ++ + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVP-YGKVTPAGSFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus] gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172 +G ++ G E G++ E + L+ + + PV P SLN + A ++++E Sbjct: 238 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297 Query: 173 IVSSEKNVKEQNT 185 + E ++++ Sbjct: 298 RIKVEDLSRDRSY 310 >gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus] gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus] Length = 311 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172 +G ++ G E G++ E + L+ + + PV P SLN + A ++++E Sbjct: 238 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297 Query: 173 IVSSEKNVKEQNT 185 + E ++++ Sbjct: 298 RIKVEDLSRDRSY 310 >gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis familiaris] Length = 423 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 44/202 (21%) Query: 25 GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKEAI 81 N+G + R+ +++ L K ++ A +I+++ + L + Sbjct: 220 PGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAAMGAHFQVPIINNLD-WETLPNYL 278 Query: 82 -ADLHFIYA----------TTARNRNNFKSV------------------LAPKEAAIVLN 112 D A + + ++ L P + L Sbjct: 279 PTDTRVYVADNCGLYAQAQMSDKASDHGWVCDRRLSKLHKYEEEEEEEDLEPGASKAWLP 338 Query: 113 ERIFSG-------QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAV 161 E ++ G E G++ E + L+ + + PV P SLN + A Sbjct: 339 ELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAA 398 Query: 162 LLMVWECMENSIVSSEKNVKEQ 183 ++++E V +E +++ Sbjct: 399 SILLFEGRRQLRVRAEHLSRDR 420 >gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 291 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I G E GL + IA S+ I P+ SLN++ A L WE + Sbjct: 232 ALKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289 >gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 161 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 25/162 (15%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74 I L P + +N G + R L ++ P S++ + +D + R Sbjct: 3 IALYQPDIPQNTGTILRLCACLGLAA-HIIEPAGFAVSDRQFRRA--GMDYLDHLDWRRH 59 Query: 75 SN---LKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129 + + A + TT + P + ++ GRE Sbjct: 60 DSWSAFEAWRATQGYRLLLLTTKGATSYLDISYRPDDI---------------LLLGRES 104 Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 G+ ++A + P+ P SLN++ A + E + Sbjct: 105 VGVPATVADAADARLRIPLKPGMRSLNVAIASAMAAGEALRQ 146 >gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 252 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 22/158 (13%) Query: 19 LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75 LVD Q N+G + R + L + K S+ + I +F Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPVIQADLFD 170 Query: 76 ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 NL+E + I A VL E A LN+ + + ++ G E G+ Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--EQAKSLNDMPKR-ETLALMVGNEGNGI 214 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + E + + P+ SLN++ A ++++ + Sbjct: 215 SPELQERLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo] gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo] Length = 246 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 13/154 (8%) Query: 19 LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 L + + +N G + R F++ L + + +S+ A + + V +N+ Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKHSAKDNSTVLRTSSGASQYVKKITV-TNI 158 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 I L ++ F + +N+ + + + +I G E G+ Sbjct: 159 NNTINFL---------KKHGFW-IYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLTK 208 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 S+ +I P + SLN+S + ++++E Sbjct: 209 QNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQ 242 >gi|241895530|ref|ZP_04782826.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|55274184|gb|AAV48972.1| hypothetical RNA methyltransferase [Weissella paramesenteroides] gi|241871232|gb|EER74983.1| hypothetical RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 202 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 + +FG E+ GL +E I ++ +I P SLN+S A ++ Sbjct: 143 KKSVFLFGEEQIGLADELIQAADQMIYIPQTGSVRSLNVSVAHGIIA 189 >gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 291 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I G E GL + IA S+ I P+ SLN++ A L WE + Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289 >gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia pediculicola USDA] Length = 259 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 17/152 (11%) Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIADL 84 N+G R F + + + R +E S A + +R + + + E + Sbjct: 109 NLGSCLRTAHFFGVDAVIVSKNRSARINEIVEKVSCGASRYVPMIRTNLVNCI-EKLKKY 167 Query: 85 HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 + T + +S+ + +NE+ + II G E G+ + + Sbjct: 168 DVQVLGT---DEKANRSIYD-----LEINEK-----KIAIIVGNEEKGIRQIIKKNCSRL 214 Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175 P SLN+S + ++E S Sbjct: 215 FRIPTKKQTSSLNVSVTAGIFLFEVCRQRKDS 246 >gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei] Length = 494 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +N +I G E+ GL + + L + + P + + SLN+ + + ++E + + Sbjct: 440 ENCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQHL 494 >gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii yoelii] Length = 777 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 +N +I G E+ GL + + L + + P + + SLN+ + + ++E + + Sbjct: 723 ENCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQHL 777 >gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238] gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238] Length = 171 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV- 71 I L +P+ N+G V RA + + +R G ++A + ++ + Sbjct: 4 THVTIGLSNPKSPTNVGAVMRAAGCYQVDDVR----YTGERYDRATKFQTDTKKAVNKIP 59 Query: 72 -RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 L + +AD + + E A+ L E + + +FG E Sbjct: 60 LTSVECLLDNLAD------------DMKIVCVELAEGAVSLPEFKHPDKAI-YVFGPEDG 106 Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 +T + ++ ++ P +N++ V ++++ Sbjct: 107 SITQQVADRADHVVYIPT---VGCMNLAATVNVLLY 139 >gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25] gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25] Length = 268 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%) Query: 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67 AKG +I L N+G + R + + + + K S++ Sbjct: 121 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 180 Query: 68 IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---II 124 + V + S L+EA P A + E + + ++ Sbjct: 181 VSLVDLPSYLEEA---------------------NLPVYGAFLEGESVHKTEFAAEGILL 219 Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 G E G+ E L I+ P SLN++ A +++ Sbjct: 220 MGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATGIIL 260 >gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 251 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 IL + N+G + R + + + R + +S A + RV +NL Sbjct: 105 ILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARV-TNL 163 Query: 78 KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + +L +++ T + R + V ++ G E G++ Sbjct: 164 VQVAKELQKSGVWLFGT---------------DMQGTDYRRWDAKGAVALVIGNEGKGIS 208 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167 + +++ P+ SLN S A L++++ Sbjct: 209 PLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQ 242 >gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 291 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I G E GL + IA S+ I P+ SLN++ A L WE + Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289 >gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus C505] Length = 332 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 34/168 (20%) Query: 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----- 67 ++ L N+G V R+ F DG + RS NA Sbjct: 175 TPLLVALDQVTDPHNLGAVLRSAGAFG---------ADGVIIPERRSVGVNATVWKVSAG 225 Query: 68 -------IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120 + L++ + F+ + + + Sbjct: 226 AAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGST-------------AVEDLTLADSP 272 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 + ++ G E GL+ + + S P++ SLN + A + ++E Sbjct: 273 LVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEV 320 >gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319] Length = 252 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 20/151 (13%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + + + K S+ A + V+ +L E I+ Sbjct: 116 QDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK--GDLLEMIS 173 Query: 83 DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138 L +Y T+ +N + V +I G E G++ + + Sbjct: 174 LLKERGIAVYGTSLQNGKVYTCV--------------KPSNEFALIVGNEGNGVSEKVLE 219 Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 ++ + P+ SLN++ A ++++ Sbjct: 220 QTDQNLYIPIYGKSESLNVAIASGILLYYLR 250 >gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans DSM 771] Length = 266 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 26/163 (15%) Query: 18 ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DS 70 +LV Q N+G + R + + L + K ++ + + + Sbjct: 120 VLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEP 179 Query: 71 VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130 V+ L +A + + P++ V + V ++ G E Sbjct: 180 VQAAELLLQA--GIRLVVG-------------MPQDCQPV--YSVDLTGPVALVVGSEAN 222 Query: 131 GLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172 G++ E + AI ++ P+ SLN + A +M++E + Sbjct: 223 GVS-EGLKRLPAIPVNIPMPGHAESLNAAIAAAIMLYEAVRQR 264 >gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 291 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 + + +I G E GL + IA S+ I P+ SLN++ A L WE + Sbjct: 232 ALKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289 >gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262] gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262] gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378] Length = 252 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 22/158 (13%) Query: 19 LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DSVR 72 LVD Q N+G + R + L + K S+ + I D Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQADLFE 170 Query: 73 VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132 +NL+E + I A VL + A LN+ + + ++ G E G+ Sbjct: 171 WVANLEE--EGVPVIGA-----------VLD--DQAKSLNDMPKR-ETLALMVGNEGNGI 214 Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + E + + P+ SLN++ A ++++ + Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252 >gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.] Length = 247 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173 I + ++ G E G+ + ++ P+ SLN+S A + ++E + + Sbjct: 186 IQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAVRQRL 244 >gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088] Length = 256 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 11/150 (7%) Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76 I+L +N+GM+ R+ +T +V R P + ++ V ++ Sbjct: 114 ILLDRVTNPQNLGMILRSTTAAGITG-VIVPERGCAPLGPLVAKASAGTLFHAPVLRCTS 172 Query: 77 LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136 EA+ D T ++ +E + G E G+ + Sbjct: 173 SSEAL-DALLGLGFTCYTLSSHTESNFFEEHIP---------AKAVFVLGNESEGVAPDI 222 Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166 + A + P++ SLN++ L+ + Sbjct: 223 ASRCQAKVRIPMHNGVESLNVAITAALIAY 252 >gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379] Length = 272 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P A +L +A+ V+++ NIG + R+ + L++P P ++ S Sbjct: 109 PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVS 166 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120 A + R L+ L + R L P A ++E + Sbjct: 167 MGAVFSVPYAR----LEAWPKGLEAV-----REAGFRLLALTPDAKATSIDEAAPHRLER 217 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 V ++ G E GL+ + ++ + P+ SLN+ Sbjct: 218 VALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLNVGA 256 >gi|8895693|gb|AAF81066.1|AF223364_1 tRNA/rRNA methyltransferase-like protein [Myxococcus xanthus] Length = 88 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 8 LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67 L+ A+ ++LV PQ+ N G VAR +L LV P ++ + Sbjct: 2 LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRA--GLDY 58 Query: 68 IDSV 71 D V Sbjct: 59 WDKV 62 >gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio fructosovorans JJ] Length = 264 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 10/159 (6%) Query: 7 QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66 + + + L Q N+G +AR ++ + L A +SA Sbjct: 108 ATRAAPLPVAVALDRVQDPGNVGTLARTLFALGGGGILLPRHEGARLGPGAAKASAGTLA 167 Query: 67 VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126 + +V +NL +A+ A F V A E + + ++ G Sbjct: 168 RLPVAKV-TNLAQALD---------AAIEAGFSIVGAAGEPEADNALEATADFPLILVLG 217 Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 E G+ + P SLN++QA +++ Sbjct: 218 NEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256 >gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 254 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 26/173 (15%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62 P P L+N G ++L D Q N+G + R L L++ + + S Sbjct: 93 PSLP-LENLKVGRYLVLEDVQDPGNVGTMIRTADAAGLDG-VLISEKSADIYNQKTLRSM 150 Query: 63 NADCV---IDSVRVFSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERI 115 I V+ EA + +L + ATT + V + + Sbjct: 151 QGSHFHLPIWRTNVY----EACQKLQNLDVPLIATTLSKES-------------VSYKTV 193 Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 N ++ G E G+++ ++ + + SLN++ A +++++ Sbjct: 194 EHNGNFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246 >gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 265 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18] Length = 265 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24] gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4] gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15] gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676] gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar pakistani str. T13001] Length = 265 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 254 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134] gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876] gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W] gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2] gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185] gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407] gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200] Length = 265 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam] Length = 265 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256 >gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987] Length = 254 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579] gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171] Length = 254 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 23 QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82 Q N+G + R + + L + K S+ + + V+ NL+E + Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171 Query: 83 DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142 L NN E + E +G + +I G E G+ E +A ++ Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221 Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166 + P+ SLN++ A ++ + Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245 >gi|54023445|ref|YP_117687.1| hypothetical protein nfa14780 [Nocardia farcinica IFM 10152] gi|54014953|dbj|BAD56323.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 165 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161 L P+ + + G E GL + L + +I P +P SLN+S A Sbjct: 80 LDPR---AESLTTFAHPRRALYLLGAEDHGLPEAVLTLCHQVIQIP-SPAPWSLNVSVAG 135 Query: 162 LLMVW-----ECMENSIVSSEKNVKEQNTP 186 L++ E ++ + + + T Sbjct: 136 SLVLHDRFVKESQRKALANPAARLAQAVTA 165 >gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330] gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar Abortus 2308] gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870] gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str. Tulya] gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str. 86/8/59] gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686] gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M163/99/10] gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94] gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292] gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1] gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str. Rev.1] gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str. Ether] gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1] gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94] gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68] gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99] gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str. B3196] gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330] gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str. 9-941] gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar Abortus 2308] gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840] gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365] gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445] gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19] gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457] gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915] gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038] gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40] gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292] gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870] gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str. B3196] gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28] gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90] Length = 159 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%) Query: 16 VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73 + L P + N G + R A F + L+ P S++A + ++ + Sbjct: 4 RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 58 Query: 74 FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133 + D A +N + ++ A + +N ++FGRE G+ Sbjct: 59 TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 110 Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 ++ + P+ SLN++ +V + E + Sbjct: 111 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148 >gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces sp. oral taxon 171 str. F0337] Length = 304 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 9/155 (5%) Query: 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77 +L Q N G + RA + LV + K S+A + + V + L Sbjct: 158 VLAQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVA-L 216 Query: 78 KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137 +A+ LH T + + + G E GL +E + Sbjct: 217 DDAVTALHSAGLTVLAADG--------RGDLDLFEAESLLEAPSAWLLGNEAHGLPSEAL 268 Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 + ++A++S P+ SLN++ A + ++ Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303 >gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 415 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170 + + + G E G I L++ + P++ SLN++ A ++ +E + Sbjct: 358 RKMAFLVGNEGAGTNPYFIELADETVKIPMSSELESLNVAVAHGILSYEAAQ 409 >gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998] Length = 256 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%) Query: 3 PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61 P A +L +A+ V+++ NIG + R+ + L++P P ++ S Sbjct: 93 PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVS 150 Query: 62 ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120 A + R L+ L + R L P A ++E + Sbjct: 151 MGAVFSVPYAR----LEAWPKGLEAV-----REAGFRLLALTPDAKATSIDEAAPHRLER 201 Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159 V ++ G E GL+ + ++ + P+ SLN+ Sbjct: 202 VALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLNVGA 240 >gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans